From 8dc4561a3041ab59f79501c5cf1a8aad7d3c56e5 Mon Sep 17 00:00:00 2001 From: Vinay K L Date: Sat, 14 Sep 2024 16:25:12 -0500 Subject: [PATCH] fix typo in phasing workflow Fixes the typo in phasing workflow from 'mapping' to 'phasing' --- docs/daily-use/daily-use-4-workflows.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/daily-use/daily-use-4-workflows.rst b/docs/daily-use/daily-use-4-workflows.rst index 2e4b129..32c1385 100644 --- a/docs/daily-use/daily-use-4-workflows.rst +++ b/docs/daily-use/daily-use-4-workflows.rst @@ -181,7 +181,7 @@ This contains a section pointing to the location of the BAM files created during phyluce_workflow --config \ --output \ - --workflow mapping \ + --workflow phasing \ --cores 1 This produces a folder of output containing BAMs and FASTAs for each haplotye that looks like the following (here, only showing the results for ``gallus-gallus`` versus all 4 taxa in the configuration file: @@ -255,4 +255,4 @@ This produces a folder of output that looks like the following. Within this dir ├── rana-sphenocephafa.norm.flt-indels.Q20.DP10.bcf └── rana-sphenocephafa.norm.flt-indels.Q20.DP10.bcf.csi -Once the "correction" process has been run, you can re-input the corrected contigs to the phyluce_ analysis process from the ``phyluce_assembly_match_contigs_to_probes`` program. \ No newline at end of file +Once the "correction" process has been run, you can re-input the corrected contigs to the phyluce_ analysis process from the ``phyluce_assembly_match_contigs_to_probes`` program.