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fix typo in phasing workflow #348

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fix typo in phasing workflow #348

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4 changes: 2 additions & 2 deletions docs/daily-use/daily-use-4-workflows.rst
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Expand Up @@ -181,7 +181,7 @@ This contains a section pointing to the location of the BAM files created during

phyluce_workflow --config <path to your config file> \
--output <path to some output folder name> \
--workflow mapping \
--workflow phasing \
--cores 1

This produces a folder of output containing BAMs and FASTAs for each haplotye that looks like the following (here, only showing the results for ``gallus-gallus`` versus all 4 taxa in the configuration file:
Expand Down Expand Up @@ -255,4 +255,4 @@ This produces a folder of output that looks like the following. Within this dir
├── rana-sphenocephafa.norm.flt-indels.Q20.DP10.bcf
└── rana-sphenocephafa.norm.flt-indels.Q20.DP10.bcf.csi

Once the "correction" process has been run, you can re-input the corrected contigs to the phyluce_ analysis process from the ``phyluce_assembly_match_contigs_to_probes`` program.
Once the "correction" process has been run, you can re-input the corrected contigs to the phyluce_ analysis process from the ``phyluce_assembly_match_contigs_to_probes`` program.