diff --git a/01-intro.Rmd b/01-intro.Rmd index 886eb52..10fc69a 100644 --- a/01-intro.Rmd +++ b/01-intro.Rmd @@ -8,15 +8,29 @@ ottrpal::set_knitr_image_path() ## Motivation +This course aims to provide motivations for learning computational skills and discuss specific examples or ways computational skills could benefit or supplement wet lab work. ## Target Audience -The course is intended for ... +The course is intended for wet lab researchers who have very little to no computational research experience (for example: users of Excel or GraphPad Prism, but non-"coders") + +```{r, echo=FALSE, fig.align='center', out.width="100%", fig.alt="FILL IN TARGET AUDIENCE"} +ottrpal::include_slide("https://docs.google.com/presentation/d/137sOakbsXwN3ovgtlAzZMbQ5a_6ZIg-weTYeQ_Z7DqU/edit#slide=id.g273f0eecfd5_5_25") +``` ## Curriculum The course covers... +```{r, echo=FALSE, fig.align='center', out.width="100%", fig.alt="FILL IN CONCEPTS DISCUSSED"} +ottrpal::include_slide("https://docs.google.com/presentation/d/137sOakbsXwN3ovgtlAzZMbQ5a_6ZIg-weTYeQ_Z7DqU/edit#slide=id.g273f0eecfd5_5_0") +``` + +## Objectives + +```{r, echo=FALSE, fig.align='center', out.width="100%", fig.alt="FILL IN OBJECTIVES"} +ottrpal::include_slide("https://docs.google.com/presentation/d/137sOakbsXwN3ovgtlAzZMbQ5a_6ZIg-weTYeQ_Z7DqU/edit#slide=id.g273f3ba2b3c_1_292") +``` ```{r} devtools::session_info() diff --git a/01b-overview.Rmd b/01b-overview.Rmd new file mode 100644 index 0000000..d7b8fbe --- /dev/null +++ b/01b-overview.Rmd @@ -0,0 +1,40 @@ +```{r, include = FALSE} +ottrpal::set_knitr_image_path() +``` +# The who, what, when, where, and why of Computational Biology + +## Learning Objectives + +```{r, echo=FALSE, fig.align='center', out.width="100%", fig.alt="FILL IN LOs"} +ottrpal::include_slide("https://docs.google.com/presentation/d/137sOakbsXwN3ovgtlAzZMbQ5a_6ZIg-weTYeQ_Z7DqU/edit#slide=id.g27401a19bd8_1_0") +``` + +## What are computational biology and data science? + +## Motivations for computational work in general and to learn computational skills yourself + +## Examples of the application of computational work to wet lab research + +## The philosophies and best practices of computational work + +### Rigor and ethics in computational work + +## Which computational skills are the most important to prioritize learning as a wet lab scientist + +### Data Wrangling + +### Data Visualization + +### Reproducibility and Transparency + +### Sharing and reusing public data, code, or tools + +## Summary + +In conclusion, the benefits of knowing computational skills as a wet lab scientist ... + +```{r, echo=FALSE, fig.align='center', out.width="100%", fig.alt="There are benefits to learning computational skills as a wet lab scientist!"} +ottrpal::include_slide("https://docs.google.com/presentation/d/137sOakbsXwN3ovgtlAzZMbQ5a_6ZIg-weTYeQ_Z7DqU/edit#slide=id.g273f0ffd840_0_3") +``` + +Rather than a scientist being a wet-lab researcher or a dry-lab researcher, in the future we hope scientists have and utilize lab and computational skills for their research. diff --git a/_bookdown.yml b/_bookdown.yml index be44855..a656cc4 100644 --- a/_bookdown.yml +++ b/_bookdown.yml @@ -1,8 +1,9 @@ book_filename: "Bench to Bytes" chapter_name: "Chapter " -repo: https://github.com/jhudsl/OTTR_Template/ +repo: https://github.com/fhdsl/bench_to_bytes/ rmd_files: ["index.Rmd", "01-intro.Rmd", + "01b-overview.Rmd", "02-DataCleaning.Rmd", "03-DataViz.Rmd", "04-Reproducibility.Rmd", diff --git a/index.Rmd b/index.Rmd index d23fbb2..5d3c6b7 100644 --- a/index.Rmd +++ b/index.Rmd @@ -28,7 +28,7 @@ This course is part of a series of courses for the [Informatics Technology for C This course is available in multiple formats which allows you to take it in the way that best suites your needs. You can take it for certificate which can be for free or fee. -- The material for this course can be viewed without login requirement on this [Bookdown website](LINK HERE). This format might be most appropriate for you if you rely on screen-reader technology. +- The material for this course can be viewed without login requirement on this [course website](https://hutchdatascience.org/bench_to_bytes/). This format might be most appropriate for you if you rely on screen-reader technology. - This course can be taken for [free certification through Leanpub](LINK HERE). - This course can be taken on [Coursera for certification here](LINK HERE) (but it is not available for free on Coursera). -- Our courses are open source, you can find the [source material for this course on GitHub](LINK HERE). +- Our courses are open source, you can find the [source material for this course on GitHub](https://github.com/fhdsl/bench_to_bytes).