feat: mapping file update

Author: huwei-mc

misc/check_misc_references.py

@@ -29,6 +29,12 @@
     "history_file_path",
 ]
 
+# File name whitelist - these are output files that should be ignored
+WRITE_FILE_WHITELIST = [
+    "my_medium.json",
+    "inv_des_diamond_light_extractor.gds",
+]
+
 
 def get_project_root() -> Path:
     """Get the project root directory (parent of misc)."""
@@ -107,6 +113,9 @@ def find_misc_references(notebook_path: Path) -> set[str]:
             # Skip files ending with _ (likely part of string concatenation)
             if filename.endswith("_"):
                 continue
+            # Skip files in the whitelist (known output files)
+            if filename in WRITE_FILE_WHITELIST:
+                continue
             # Skip if this is in a write method context (output file, not input)
             if is_write_context(content, match.start()):
                 continue

misc/import_file_mapping.json

@@ -73,8 +73,7 @@
         "wpd-part3-fem.csv"
     ],
     "Fitting.ipynb": [
-        "nk_data.csv",
-        "my_medium.json"
+        "nk_data.csv"
     ],
     "FocusedApodGC.ipynb": [
         "Focusing_GC.gds"
@@ -155,9 +154,6 @@
         "prefab_base_sim.hdf5",
         "prefab_gc.gds"
     ],
-    "Autograd21GaPLightExtractor.ipynb": [
-        "inv_des_diamond_light_extractor.gds"
-    ],
     "CMOSRGBSensor.ipynb": [
         "green_eps.csv",
         "blue_eps.csv",