diff --git a/.env/.RAISE_environment b/.env/.RAISE_environment new file mode 100644 index 0000000..833c254 --- /dev/null +++ b/.env/.RAISE_environment @@ -0,0 +1,53 @@ +#!/bin/bash + +#RAISE_env 1/15/2015 +#check if this all is correct for RAISE + + +# SET HELPFUL ENVIRONMENT FEATURES / VARIABLES +umask 0002 +alias ls="ls --color=auto" +export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1 + + +# SET UP MATLAB +##### might not need +module add mit/matlab/2013a +alias matlab="matlab -singleCompThread" + + +# SET UP FREESURFER 5.3.0, FSL + +module add openmind/freesurfer/5.3.0 +module add openmind/fsl/5.0.7 + +##### do we need? +export SUBJECTS_DIR=/mindhive/xnat/surfaces/RAISE/ +echo "Setting SUBJECTS_DIR to $SUBJECTS_DIR" + + +# SET UP ANTS + +module add openmind/ants/2.1.0-1.c0c854 + + +# SET UP PYTHON + +module add openmind/miniconda/3.7.0 +export CONDA_ENVS_PATH=/om/project/RAISE/env/ +source activate RAISE_env + + +# SET UP MRICRON + +module add openmind/mricron/13.06.06 + + +# PROJECT NAME +export project_name="RAISE" + + +# ADDITIONAL MODULES + +module add openmind/c3d/1.0.0 +module add openmind/git/1.9.3 diff --git a/.projects b/.projects index 8244e6f..390055d 100644 --- a/.projects +++ b/.projects @@ -134,4 +134,11 @@ function read_env() source ~/.env/.read_environment } +function raise_env() +{ + +source ~/.env/.RAISE_environment +} + +