From 7ac435b3650bb3ac13901b334cee4fdaf88cb9b3 Mon Sep 17 00:00:00 2001
From: Engy Nasr <engynasr94@gmail.com>
Date: Tue, 12 Mar 2024 09:40:45 +0100
Subject: [PATCH 1/3] Update .shed.yml to include correct repository url

---
 tool_collections/taxonomy/t2t_report/.shed.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tool_collections/taxonomy/t2t_report/.shed.yml b/tool_collections/taxonomy/t2t_report/.shed.yml
index fcac2ae3..321054c9 100644
--- a/tool_collections/taxonomy/t2t_report/.shed.yml
+++ b/tool_collections/taxonomy/t2t_report/.shed.yml
@@ -7,5 +7,5 @@ long_description: |
 name: t2t_report
 owner: devteam
 homepage_url: https://bitbucket.org/natefoo/taxonomy
-remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/t2t_report
+remote_repository_url: https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/t2t_report
 type: unrestricted

From aa1f2b8e36f940dff5954b43efa509f2eb79ac44 Mon Sep 17 00:00:00 2001
From: Engy Nasr <engynasr94@gmail.com>
Date: Tue, 12 Mar 2024 09:42:14 +0100
Subject: [PATCH 2/3] Update t2t_report.xml to include the biotools tool id

---
 tool_collections/taxonomy/t2t_report/t2t_report.xml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tool_collections/taxonomy/t2t_report/t2t_report.xml b/tool_collections/taxonomy/t2t_report/t2t_report.xml
index ca6cc99d..6a58ce8f 100644
--- a/tool_collections/taxonomy/t2t_report/t2t_report.xml
+++ b/tool_collections/taxonomy/t2t_report/t2t_report.xml
@@ -1,5 +1,8 @@
 <tool id="t2t_report" name="Summarize taxonomy" version="1.0.0">
     <description></description>
+    <xrefs>
+        <xref type="bio.tools">t2t_report</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1.0.0">taxonomy</requirement>
     </requirements>

From a074320a36e564d78fd3bee6504bdbf9914b490b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Fri, 17 May 2024 14:35:10 +0200
Subject: [PATCH 3/3] Update .tt_skip

---
 .tt_skip | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.tt_skip b/.tt_skip
index d56b6532..8ab7e77a 100644
--- a/.tt_skip
+++ b/.tt_skip
@@ -7,7 +7,6 @@ tool_collections/taxonomy/gi2taxonomy
 tool_collections/taxonomy/lca_wrapper
 tool_collections/taxonomy/poisson2test
 tool_collections/taxonomy/t2ps
-tool_collections/taxonomy/t2t_report
 tool_collections/vcftools/vcftools_annotate
 tool_collections/vcftools/vcftools_compare
 tool_collections/vcftools/vcftools_isec