diff --git a/_pages/people/Epivitae.md b/_pages/people/Epivitae.md index 665af70e6..0b64387f2 100644 --- a/_pages/people/Epivitae.md +++ b/_pages/people/Epivitae.md @@ -41,8 +41,8 @@ The easiest way to install and stay up-to-date is via the **Fiji Update Site**: | Plugin | Description | Links | | :--- | :--- | :--- | -| **RIA-J**
(Ratio Imaging Analyzer) | **Publication-grade ratiometric analysis.**
Features background subtraction, pixel-by-pixel ratio calculation, and IMD display mode. | [Wiki](https://imagej.net/plugins/ria-j) / [GitHub](https://github.com/Epivitae/RIA-J) | -| **FIA**
(Fluorescence Image Aligner) | **Motion correction & Registration.**
Robustly stabilizes live-animal time-lapse datasets (Global & Dense Flow) before quantification. | [GitHub](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner) | -| **NIA**
(Neural Inference Assistant) | **Zero-setup AI denoising.**
Runs deep learning models (DnCNN) directly in Java via ONNX Runtime. No Python, no CUDA required. Supports 5D hyperstacks. | [GitHub](https://github.com/Epivitae/NIA-Denoise) / [DOI](https://doi.org/10.5281/zenodo.18244343) | -| **MIA**
(Metadata Inspection Analyzer) | **Metadata explorer.**
Instantly extracts hidden tags (Olympus .oir, OME-XML) and exports summaries to Excel/CSV. | [GitHub](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer) | -| **WinMan**
(Window Manager) | **Workspace accelerator.**
Efficiently manages, tiles, and filters multiple image windows to keep your workspace clean. | [GitHub](https://github.com/Epivitae/WinMan) | \ No newline at end of file +| **RIA-J**
(Ratio Imaging Analyzer) | **Publication-grade ratiometric analysis.**
Features background subtraction, pixel-by-pixel ratio calculation, and IMD display mode. | [Wiki](https://imagej.net/plugins/biosensor/ria-j) [GitHub](https://github.com/Epivitae/RIA-J) [DOI](https://doi.org/10.5281/zenodo.18204761)| +| **FIA**
(Fluorescence Image Aligner) | **Motion correction & Registration.**
Robustly stabilizes live-animal time-lapse datasets (Global & Dense Flow) before quantification. | [Wiki](https://imagej.net/plugins/biosensor/fia) [GitHub](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner) [DOI](https://doi.org/10.5281/zenodo.18206931) | +| **NIA**
(Neural Inference Assistant) | **Zero-setup AI denoising.**
Runs deep learning models (DnCNN) directly in Java via ONNX Runtime. No Python, no CUDA required. Supports 5D hyperstacks. | [Wiki](https://imagej.net/plugins/biosensor/nia) [GitHub](https://github.com/Epivitae/NIA-Denoise) [DOI](https://doi.org/10.5281/zenodo.18244343) | +| **MIA**
(Metadata Inspection Analyzer) | **Metadata explorer.**
Instantly extracts hidden tags (Olympus .oir, OME-XML) and exports summaries to Excel/CSV. |[Wiki](https://imagej.net/plugins/biosensor/mia) [GitHub](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer) [DOI](https://doi.org/10.5281/zenodo.18280807) | +| **WinMan**
(Window Manager) | **Workspace accelerator.**
Efficiently manages, tiles, and filters multiple image windows to keep your workspace clean. | [Wiki](https://imagej.net/plugins/biosensor/winman) [GitHub](https://github.com/Epivitae/WinMan) [DOI](https://doi.org/10.5281/zenodo.18224551) | \ No newline at end of file diff --git a/_pages/plugins/biosensor/fia.md b/_pages/plugins/biosensor/fia.md index bf769e0dd..919365d60 100644 --- a/_pages/plugins/biosensor/fia.md +++ b/_pages/plugins/biosensor/fia.md @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18206931.svg)](https://doi.org/10.5281/zenodo.18206931) +[![DOI](https://zenodo.org/badge/1131581394.svg)](https://doi.org/10.5281/zenodo.18206931) + **FIA (Fluorescence Image Aligner)** is a robust motion correction plugin designed to solve the full spectrum of motion artifacts in biological time-lapse microscopy. @@ -84,9 +85,8 @@ FIA is built upon established computer vision algorithms to ensure reliability: ## Citation & DOI -If you use FIA in your research, please cite the permanent Zenodo record: -Wang, K. (2026). FIA: Fluorescence Image Aligner - Robust Motion Correction for ImageJ/Fiji (v3.1.0). Zenodo. https://doi.org/10.5281/zenodo.18206931 +Wang, K. (2026). FIA: Fluorescence Image Aligner - Robust Motion Correction for ImageJ/Fiji. Zenodo. https://doi.org/10.5281/zenodo.18206931 * **Repository**: [https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner](https://github.com/Epivitae/FIA-Fluorescence-Image-Aligner) * **CNS Team**: [Chimeric Nano Sensor Team](https://www.cns.ac.cn/) diff --git a/_pages/plugins/biosensor/mia.md b/_pages/plugins/biosensor/mia.md index e06d99579..0ba1db0ee 100644 --- a/_pages/plugins/biosensor/mia.md +++ b/_pages/plugins/biosensor/mia.md @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} -[![Release](https://img.shields.io/github/v/release/Epivitae/MIA-Metadata-Inspection-Analyzer?color=blue)](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer/releases) +[![Release](https://img.shields.io/github/v/release/Epivitae/MIA-Metadata-Inspection-Analyzer?color=blue)](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer/releases) [![DOI](https://zenodo.org/badge/1136201132.svg)](https://doi.org/10.5281/zenodo.18280807) + **MIA (Metadata Inspection Analyzer)** is a streamlined, user-friendly ImageJ/Fiji plugin designed for instant extraction and visualization of microscopy metadata. @@ -55,7 +56,7 @@ MIA is distributed via the **Biosensor Tools** Fiji Update Site. If you use this software in your research, please cite the software and the repository: -Wang, K. (2026). MIA: Metadata Inspection Analyzer - A Lightweight Metadata Extraction Tool for ImageJ/Fiji (v1.0.0). [Software]. Available at https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer +Wang, K. (2026). MIA: Metadata Inspection Analyzer — A Lightweight Tool for Extracting Microscopy Source Parameters (v1.1.0). Zenodo. https://doi.org/10.5281/zenodo.18280807 * **Repository**: [https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer](https://github.com/Epivitae/MIA-Metadata-Inspection-Analyzer) * **CNS Team**: [Chimeric Nano Sensor Team](https://www.cns.ac.cn/) diff --git a/_pages/plugins/biosensor/nia.md b/_pages/plugins/biosensor/nia.md index 61d7c39e6..83fab5da5 100644 --- a/_pages/plugins/biosensor/nia.md +++ b/_pages/plugins/biosensor/nia.md @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18244343.svg)](https://doi.org/10.5281/zenodo.18244343) +[![DOI](https://zenodo.org/badge/1134239045.svg)](https://doi.org/10.5281/zenodo.18244343) + **NIA (Neural Inference Assistant)** is a native, AI-powered denoising plugin that brings deep learning to ImageJ/Fiji without the configuration headache. diff --git a/_pages/plugins/biosensor/ria-j.md b/_pages/plugins/biosensor/ria-j.md index ec4d388ba..0a41c0098 100644 --- a/_pages/plugins/biosensor/ria-j.md +++ b/_pages/plugins/biosensor/ria-j.md @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18204761.svg)](https://doi.org/10.5281/zenodo.18204761) +[![DOI](https://zenodo.org/badge/1131155665.svg)](https://doi.org/10.5281/zenodo.18200077) + **RIA-J (Ratio Imaging Analyzer - Java Edition)** is a lightweight, high-performance ImageJ/Fiji plugin designed for interactive ratiometric fluorescence analysis. diff --git a/_pages/plugins/biosensor/winman.md b/_pages/plugins/biosensor/winman.md index 37631284a..22923e7bd 100644 --- a/_pages/plugins/biosensor/winman.md +++ b/_pages/plugins/biosensor/winman.md @@ -15,7 +15,8 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} -[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18224551.svg)](https://doi.org/10.5281/zenodo.18224551) +[![DOI](https://zenodo.org/badge/1132898127.svg)](https://doi.org/10.5281/zenodo.18224551) + **WinMan (Window Manager & Workflow Accelerator)** is a lightweight utility designed to solve the "Desktop Explosion" problem in high-throughput microscopy workflows.