Skip to content

Good things to do if time #3

@rmcolq

Description

@rmcolq
  1. Allow bam file (or sorted, or sorted indexed bam file) to be input and skip the relevant steps in cortex_polish.pl, where the bam is a map of the reads to the draft assembly
  2. Allow a bam file to be input where the reads are mapped to a mysterious reference (as in our JR samples)
  3. Sort out changes in default parameters if "ont" input
  4. Make the cleanfile given threshold parameter for manual cleaning.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions