Update to Bioconductor 3.19

Author: jorainer

.github/workflows/build_deploy.yaml

@@ -7,7 +7,7 @@ on:
 jobs:
   build-and-deploy:
     runs-on: ubuntu-latest
-    container: jorainer/spectra_tutorials:latest
+    container: jorainer/spectra_tutorials:RELEASE_3_19
     steps:
       ## Most of these steps are the same as the ones in
       ## https://github.com/r-lib/actions/blob/master/examples/check-standard.yaml

.github/workflows/docker-push.yaml

@@ -32,7 +32,7 @@ jobs:
           push: true
           tag_with_ref: true
           tag_with_sha: true
-          tags: jorainer/spectra_tutorials:latest
+          tags: jorainer/spectra_tutorials:RELEASE_3_19
       -
         name: Image digest
         run: echo ${{ steps.docker_build.outputs.digest }}

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: SpectraTutorials
 Title: Mass Spectrometry Data Analysis with Spectra
-Version: 0.9.0
+Version: 1.0.0
 Authors@R: c(
 	     person(given = "Johannes", family = "Rainer",
 		    email = "Johannes.Rainer@eurac.edu",
@@ -57,4 +57,4 @@ URL: https://jorainer.github.io/SpectraTutorials/
 BugReports: https://github.com/jorainer/SpectraTutorials/issues/new
 VignetteBuilder: knitr
 RoxygenNote: 7.2.1
-DockerImage: jorainer/spectra_tutorials:latest
+DockerImage: jorainer/spectra_tutorials:RELEASE_3_19

Dockerfile

@@ -1,4 +1,4 @@
-FROM bioconductor/bioconductor_docker:RELEASE_3_18
+FROM bioconductor/bioconductor_docker:RELEASE_3_19
 
 LABEL name="jorainer/spectra_tutorials" \
       url="https://github.com/jorainer/SpectraTutorials" \

NEWS.md

@@ -1,3 +1,7 @@
+# Version 1.0
+
+- Use R 4.4 and Bioconductor 3.19.
+
 # Version 0.9
 
 ## Version 0.9.0

README.md

@@ -27,20 +27,22 @@ See [NEWS.md](NEWS.md) for information on the current version and a change log.
 
 For on-line code evaluation the workshops can also be run using a self-contained
 docker image with all R packages and a server version of RStudio (Posit)
-pre-installed. As an alternative, rendered versions of all workshops are
-available at [SpectraTutorials](https://jorainer.github.io/SpectraTutorials)
-(navigate to the *Articles* drop-down menu and select the workshop of interest).
+pre-installed. The current docker container bases (and includes) the official
+docker container for **Bioconductor release 3.19**. As an alternative, rendered
+versions of all workshops are available at
+[SpectraTutorials](https://jorainer.github.io/SpectraTutorials) (navigate to the
+*Articles* drop-down menu and select the workshop of interest).
 
 For installation:
 
 - Get the [docker image](https://hub.docker.com/r/jorainer/spectra_tutorials) of
-  this tutorial with `docker pull jorainer/spectra_tutorials:latest`.
+  this tutorial with `docker pull jorainer/spectra_tutorials:RELEASE_3_19`.
 - Start docker using
   ```
   docker run \
       -e PASSWORD=bioc \
       -p 8787:8787 \
-      jorainer/spectra_tutorials:latest
+      jorainer/spectra_tutorials:RELEASE_3_19
   ```
 - Enter `http://localhost:8787` in a web browser and log in with username
   `rstudio` and password `bioc`.