From b084601b328cbc799320a81dd3c4f3230db616ba Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 21 Nov 2025 06:29:50 +0000 Subject: [PATCH 1/2] build(deps): bump actions/checkout from 5 to 6 Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v5...v6) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/deploy.yml | 2 +- .github/workflows/test-docs.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 1450fd0..33faaea 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -28,7 +28,7 @@ jobs: url: ${{ steps.deployment.outputs.page_url }} runs-on: ubuntu-latest steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - name: Setup Pages uses: actions/configure-pages@v5 - uses: actions/setup-node@v6 diff --git a/.github/workflows/test-docs.yaml b/.github/workflows/test-docs.yaml index cd3c2ed..c290eb6 100644 --- a/.github/workflows/test-docs.yaml +++ b/.github/workflows/test-docs.yaml @@ -13,7 +13,7 @@ jobs: test-docs: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v5 + - uses: actions/checkout@v6 - uses: actions/setup-node@v6 with: node-version: 24.x From e3d3a7663d469d4e639966aaa26039c5cc2d12b3 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri, 21 Nov 2025 06:29:58 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- explanation/architecture.md | 20 ++++++++++---------- explanation/data-flow.md | 4 ++-- tutorial/tutorial-cgm.ipynb | 2 +- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/explanation/architecture.md b/explanation/architecture.md index ca0355e..7cef7b7 100644 --- a/explanation/architecture.md +++ b/explanation/architecture.md @@ -171,7 +171,7 @@ graph TB **Workflow**: -:::{div} +:::\{div} :class: dark:hidden ```{mermaid} @@ -195,7 +195,7 @@ sequenceDiagram ::: -:::{div} +:::\{div} :class: hidden dark:block ```{mermaid} @@ -276,15 +276,15 @@ graph LR **Infrastructure Details**: -| Component | Technology | Configuration | -| --------------- | ---------------- | ---------------------------------------------------- | -| **Platform** | [Fly.io](https://fly.io) | Primary region: Newark (ewr) | -| **Application** | Docker container | Gunicorn with 2 workers, WhiteNoise for static files | +| Component | Technology | Configuration | +| --------------- | --------------------------- | ---------------------------------------------------- | +| **Platform** | [Fly.io](https://fly.io) | Primary region: Newark (ewr) | +| **Application** | Docker container | Gunicorn with 2 workers, WhiteNoise for static files | | **Compute** | [Fly.io](https://fly.io) VM | 1GB RAM, 1 shared vCPU | -| **Database** | Fly Postgres | Managed PostgreSQL with automated backups | -| **HTTPS** | Fly Proxy | Automatic TLS certificates, forced HTTPS | -| **Scaling** | Auto-scaling | Min 1 machine, auto-stop/start on traffic | -| **Deployment** | GitHub Actions | Automated deploy on push to main branch | +| **Database** | Fly Postgres | Managed PostgreSQL with automated backups | +| **HTTPS** | Fly Proxy | Automatic TLS certificates, forced HTTPS | +| **Scaling** | Auto-scaling | Min 1 machine, auto-stop/start on traffic | +| **Deployment** | GitHub Actions | Automated deploy on push to main branch | **Deployment Workflow**: diff --git a/explanation/data-flow.md b/explanation/data-flow.md index bc34905..0918ef4 100644 --- a/explanation/data-flow.md +++ b/explanation/data-flow.md @@ -11,7 +11,7 @@ This document traces that journey step by step, explaining not just *what* happe Health data flows through JupyterHealth Exchange across three major phases: **Acquisition**, **Exchange**, and **Analysis**. This sequence diagram shows **who** does **what** at each stage: -:::{div} +:::\{div} :class: dark:hidden ```{mermaid} @@ -51,7 +51,7 @@ sequenceDiagram ::: -:::{div} +:::\{div} :class: hidden dark:block ```{mermaid} diff --git a/tutorial/tutorial-cgm.ipynb b/tutorial/tutorial-cgm.ipynb index fb9d9dd..6562b42 100644 --- a/tutorial/tutorial-cgm.ipynb +++ b/tutorial/tutorial-cgm.ipynb @@ -2781,4 +2781,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} \ No newline at end of file +}