Undocumented package dependencies

[pbchase]

You have two undocumented package dependencies that are blocking installation. These two lines made the installation happen. I can send you a PR later if you'd like.

install.packages("Hmisc")
install.packages("furrr")

[khasan5]

thanks so much.
Can you please let me know how to set Sys.getenv and Sys.getenv ?
I have used as follows for my test project but cant connect.

collaborator::redcap_sum(redcap_project_uri = Sys.getenv("https://redcap/index.php?pid=500"),
redcap_project_token = Sys.getenv("F46AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"),
centre_sum = F) %>%

[pbchase]

Can you please let me know how to set Sys.getenv and Sys.getenv ?

We use the R package dotenv to load environment variables from a file. We'd make a file named credentials.env and put these lines in it:

REDCAP_URI=https://redcap.tacc.utexas.edu/redcap_v10.6.11/index.php?pid=46
TOKEN=F46FAAAAAAAAAAAAAAAAAAAAAAAAAA

Then in the code you would load it and use it like this:

dotenv::load_dot_env("credentials.env")
collaborator::redcap_sum(redcap_project_uri = Sys.getenv("REDCAP_URI"),
   redcap_project_token = Sys.getenv("TOKEN"),
   centre_sum = F)

Check the dotenv docs for more info.

Also, I do hope that was not a real token you used in your example. If it was, please go change it in REDCap.

[khasan5]

Thanks so much for your response.
I have tried this way and I think I am very close to it but not successful yet.
following messages appearing :
Error in function (type, msg, asError = TRUE) :
error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version