From bea8eedd0275fed5a776af756e552663a21f7dd3 Mon Sep 17 00:00:00 2001
From: leannep <leanne@lsst.org>
Date: Tue, 17 Mar 2026 19:09:06 +0100
Subject: [PATCH 1/3] Add subdirs sections, tables; check they are not empty;
 README.txt  is README.rst

---
 Makefile | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/Makefile b/Makefile
index 1ef9647..ce60212 100644
--- a/Makefile
+++ b/Makefile
@@ -2,10 +2,10 @@ DOCTYPE = RTN
 DOCNUMBER = 115
 DOCNAME = $(DOCTYPE)-$(DOCNUMBER)
 FLATDIR = forAAS
+SUBDIRS = figures tables sections
 
 tex = $(filter-out $(wildcard *aglossary.tex) , $(wildcard *.tex))
 
-
 GITVERSION := $(shell git log -1 --date=short --pretty=%h)
 GITDATE := $(shell git log -1 --date=short --pretty=%ad)
 GITSTATUS := $(shell git status --porcelain)
@@ -28,9 +28,12 @@ flat:
 		mkdir $(FLATDIR) ; \
 	fi
 	latexpand --keep-comments -o $(FLATDIR)/$(DOCNAME).tex $(DOCNAME).tex
-	if [ -d "figures" ]; then \
-		cp figures/* $(FLATDIR) ;\
-	fi
+	@for dir in $(SUBDIRS); do \
+		if [ -d "$$dir" ] && [ -n "$$(ls -A $$dir 2>/dev/null)" ]; then \
+			cp $$dir/* $(FLATDIR); \
+			echo "  ✓ Copied $$dir"; \
+		fi; \
+	done
 	cp aas*.* $(FLATDIR)
 	cp *.bib $(FLATDIR)
 	cd $(FLATDIR) &&\
@@ -39,9 +42,8 @@ flat:
 	latexmk -bibtex -xelatex -f $(DOCNAME) &&\
 	latexmk -c &&\
 	rm -f *.gls *.xdv *.glg *.glo *.ist *.bib &&\
-	rm README.txt
-	echo "Flat files  in $(FLATDIR)."
-
+	if [ -f README.rst ]; then rm README.txt; fi && \
+	echo "Flat files in $(FLATDIR)."
 
 .PHONY: clean
 clean:

From bc3ad040c58fb91a50ea19746096137d5b573ca6 Mon Sep 17 00:00:00 2001
From: leannep <leanne@lsst.org>
Date: Wed, 18 Mar 2026 13:34:42 +0100
Subject: [PATCH 2/3] Only copy figures, check directory is not empty and
 corect name of README file

---
 Makefile | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/Makefile b/Makefile
index ce60212..f889f2e 100644
--- a/Makefile
+++ b/Makefile
@@ -2,7 +2,7 @@ DOCTYPE = RTN
 DOCNUMBER = 115
 DOCNAME = $(DOCTYPE)-$(DOCNUMBER)
 FLATDIR = forAAS
-SUBDIRS = figures tables sections
+SUBDIRS = figures
 
 tex = $(filter-out $(wildcard *aglossary.tex) , $(wildcard *.tex))
 
@@ -56,8 +56,6 @@ clean:
 
 .FORCE:
 
-
-
 SCRIPTS_DIR=scripts
 PYTHON_SCRIPTS=$(wildcard $(SCRIPTS_DIR)/*.py)
 

From 1c79923cf6f30e4468ba6ef89e78ed18ef11b472 Mon Sep 17 00:00:00 2001
From: William O'Mullane <womullan@lsst.org>
Date: Wed, 18 Mar 2026 11:37:44 -0300
Subject: [PATCH 3/3]  fix readme delete

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index f889f2e..a6ee694 100644
--- a/Makefile
+++ b/Makefile
@@ -42,7 +42,7 @@ flat:
 	latexmk -bibtex -xelatex -f $(DOCNAME) &&\
 	latexmk -c &&\
 	rm -f *.gls *.xdv *.glg *.glo *.ist *.bib &&\
-	if [ -f README.rst ]; then rm README.txt; fi && \
+	if [ -f README.txt ]; then rm README.txt; fi && \
 	echo "Flat files in $(FLATDIR)."
 
 .PHONY: clean