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Local and AWS dbGaP key not found using docker image #168

@BrenKenna

Description

@BrenKenna

Hi,

I'm trying use your docker within a aws-batch job, but I keep getting key not found error (the key does exist). Below is what I'm running and snippet from the error.

Pull image

sudo docker pull fusera/fusera:alpine

Setup mounting directory and list samples to mount

mkdir -p ~/TOPMed_test/
echo -e "SRR6769030\nSRR6769027\nSRR6769028\nSRR6769029" > ~/testing.txt

Mount data

key=$(ls ~/*ngc)
sudo docker run b22c00f65c8b fusera mount -d -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 &

Print log file

cat ~/TOPMed-Test-Mounting.log
DEBUG 2020/04/23 10:58:19 errors.go:48: couldn't open ngc file at: /home/ec2-user/prj_XXXXX.ngc: open /home/ec2-user/prj_XXXX.ngc: no such file or directory

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