my-writing-workflow/example_papaja.Rmd at master · monicaycli/my-writing-workflow · GitHub

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---
title             : "Example for Converting RMarkdown into Word Doc and PDF with Papaja"
shorttitle        : "RMarkdown & Papaja"

author            :
  - name          : "Monica Li"
    affiliation   : "a"
    corresponding : yes    # Define only one corresponding author
    address       : "Psychological Sciences Department, 406 Babbidge Road, Unit 1020, Storrs, CT 06269"
    email         : "monica.yc.li@gmail.com"
  - name          : "Imaginary Author Two"
    affiliation   : "b"
affiliation       :
  - id            : "a"
    institution   : "University of Connecticut"
  - id            : "b"
    institution   : "Institute of Somewhere Over the Rainbow"

author_note: >

abstract: >
  This document has similar content as `example_pandoc.md` but with
  more sophisticated format settings for the APA citation style.
  For more detailed examples including R syntax, check out `papaja`'s
  [GitHub repo](https://github.com/crsh/papaja).

keywords: "APA style, knitr, R, R markdown, papaja, docx, pdf"
wordcount: "[insert word count here]"

bibliography      : ["example.bib"]
csl               : ["APA_ML.csl"]

figsintext        : yes
figurelist        : no
tablelist         : no
footnotelist      : no
lineno            : yes
linkcolor         : "blue"

lang              : "english"
class             : "man"
output            : papaja::apa6_pdf # Use papaja::apa6_word for Word documents
---

# Instructions
1. Install [`R Studio`](https://www.rstudio.com/products/rstudio/download/)

2. Install [`papaja`](https://github.com/crsh/papaja) in `R Studio`

3. To convert this file into a Word document:
    1. make sure in the yaml block, `output` is set to `papaja::apa6_word`
    2. click the `knit` button in `R Studio`

4. To convert this file into a PDF file:
    1. make sure in the yaml block, `output` is set to `papaja::apa6_pdf`
    2. click the `knit` button in `R Studio`

# In-Text Citation Examples
Citations are referred to by their citation keys (which you can specify in your reference manager, like _Mendeley_) in square brackets [@Magnuson2011], and multiple citations are separated by semicolons like so [@Magnuson2011; @Magnuson2015].

You can add a prefix or suffix to a citation, for example, when you cite pages from a book [@Marr1982, pp.24-27].

Although you can technically put the citation outside of square brackets like @Magnuson2018, you might encounter formatting issues like unwanted ampersands.
In cases like this, you might want to suppress the author name(s) in the parenthesis by adding `-` before the citation key, like this: Magnuson, Mirman, Luthra, Strauss, and Harris [-@Magnuson2018].

Also, the **(in press)** part of the previous reference is enabled by my workaround `APA_ML.csl` to work with _Mendeley_.
Check out `example.bib` for `@Magnuson2018` to see how it's set up.

For theses, dissertations, unpublished, and almost published manuscripts, like [@Li2014; @Li2016; @Li2017; @Noordenbos2013a], some care needs to be done when entering the information in your reference manager.
Check out `example.bib` for these references to see the setup.

All cited references will be automatically generated at the end of the converted document or under `# References` / `# Bibliography`.

# References