From b6ad92329b2384940de3f0ee31740e4d6e2a001a Mon Sep 17 00:00:00 2001
From: "Richard C. Burhans" <rico@bx.psu.edu>
Date: Wed, 9 Apr 2025 14:43:42 -0400
Subject: [PATCH] replicate legacy setuptools behavior:
 https://setuptools.pypa.io/en/latest/userguide/development_mode.html#legacy-behavior
 add missing config mounts

---
 pulsar/init.sh        | 2 +-
 remote-galaxy/init.sh | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/pulsar/init.sh b/pulsar/init.sh
index 26b1373..3763e2d 100644
--- a/pulsar/init.sh
+++ b/pulsar/init.sh
@@ -22,7 +22,7 @@ docker_run \
     -v "${PULSAR_ROOT}:/pulsar" \
     -v "${root}/pulsar/venv:/pulsar/.venv" \
     "$PULSAR_IMAGE" \
-    ./.venv/bin/pip install -e .
+    ./.venv/bin/pip install -e . --config-settings editable_mode=compat
 
 log "Installing Pulsar additional dependencies"
 docker_run \
diff --git a/remote-galaxy/init.sh b/remote-galaxy/init.sh
index b748b2e..a786cda 100644
--- a/remote-galaxy/init.sh
+++ b/remote-galaxy/init.sh
@@ -18,5 +18,7 @@ log "Updating remote Galaxy venv for remote metadata"
 docker_run \
     -v "${GALAXY_ROOT}:/remote-galaxy:ro" \
     -v "${root}/remote-galaxy/venv:/remote-galaxy/.venv" \
+    -v "${root}/galaxy/config/galaxy.yml:/remote-galaxy/config/galaxy.yml:ro" \
+    -v "${root}/galaxy/config/job_conf.yml:/remote-galaxy/config/job_conf.yml:ro" \
     "$PULSAR_IMAGE" \
     bash ./scripts/common_startup.sh --skip-client-build