From cb72d33ca4d32f9466a0c1c3ee4600ec54da1109 Mon Sep 17 00:00:00 2001 From: "Franklin Tamborello, PhD, CSP, CHFP" Date: Thu, 5 Oct 2023 18:08:31 -0500 Subject: [PATCH 1/2] BioWordVec.py: Removed two apparently deprectated arguments to gensim.models.FastText. node2vec.py: revised an apparently obsolete alias for the numpy int data type. requirements.txt: init --- BioWordVec.py | 4 ++-- node2vec.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/BioWordVec.py b/BioWordVec.py index 806ed6b..749f301 100644 --- a/BioWordVec.py +++ b/BioWordVec.py @@ -115,8 +115,8 @@ def main(args): temp_list.append(mesh_dict[node]) new_walks.append(temp_list) - model = FastText(MySentences(new_walks,args.input_corpus), size=args.dimensions, window=args.windows, min_count=args.min_count, workers=args.workers, - sg=args.sg, iter=args.iter) + model = FastText(MySentences(new_walks,args.input_corpus), window=args.windows, min_count=args.min_count, workers=args.workers, + sg=args.sg) # size=args.dimensions, , iter=args.iter model.save(args.output_model) diff --git a/node2vec.py b/node2vec.py index affeee4..a10b374 100644 --- a/node2vec.py +++ b/node2vec.py @@ -119,7 +119,7 @@ def alias_setup(probs): ''' K = len(probs) q = np.zeros(K) - J = np.zeros(K, dtype=np.int) + J = np.zeros(K, dtype=int) smaller = [] larger = [] From 6b589d73b9597eba9911aa6f8d253a5e097c89df Mon Sep 17 00:00:00 2001 From: "Franklin Tamborello, PhD, CSP, CHFP" Date: Thu, 5 Oct 2023 18:09:01 -0500 Subject: [PATCH 2/2] Init requirements.txt --- requirements.txt | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 requirements.txt diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..4790de5 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,4 @@ +networkx +node2vec +gensim +numpy