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modules.json
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207 lines (207 loc) · 9.55 KB
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{
"name": "nf-core/callingcards",
"homePage": "https://github.com/nf-core/callingcards",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bedtools/maskfasta": {
"branch": "master",
"git_sha": "3b248b84694d1939ac4bb33df84bf6233a34d668",
"installed_by": ["modules"]
},
"bowtie/align": {
"branch": "master",
"git_sha": "3c77ca9aac783e76c3614a06db3bfe4fef619bde",
"installed_by": ["modules"]
},
"bowtie/build": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "0fe30831abbc2ed115e46e92330edf38f56edc3d",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"bwa/aln": {
"branch": "master",
"git_sha": "086fa66260595e123b0ea47a6512539b72a9afa3",
"installed_by": ["fastq_align_bwaaln", "modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "086fa66260595e123b0ea47a6512539b72a9afa3",
"installed_by": ["modules"]
},
"bwa/sampe": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["fastq_align_bwaaln", "modules"]
},
"bwa/samse": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["fastq_align_bwaaln", "modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "7081e04c18de9480948d34513a1c1e2d0fa9126d",
"installed_by": ["modules"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "3afb95b2e15fc4a2347470255a7ef654f650c8ec",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "de45447d060b8c8b98575bc637a4a575fd0638e1",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "20b0918591d4ba20047d7e13e5094bcceba81447",
"installed_by": ["modules"]
},
"preseq/ccurve": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"rseqc/bamstat": {
"branch": "master",
"git_sha": "9eb22e4d3f28c274b7c498a1564581377349a242",
"installed_by": ["bam_rseqc", "modules"]
},
"rseqc/inferexperiment": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc", "modules"]
},
"rseqc/innerdistance": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc", "modules"]
},
"rseqc/junctionannotation": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc"]
},
"rseqc/junctionsaturation": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc"]
},
"rseqc/readdistribution": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc", "modules"]
},
"rseqc/readduplication": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc", "modules"]
},
"rseqc/tin": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["bam_rseqc", "modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "f153f1f10e1083c49935565844cccb7453021682",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["fastq_align_bwaaln", "modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"seqkit/split2": {
"branch": "master",
"git_sha": "2be41ca2cc780eca4293d1b0dd3850b0b7ac40a3",
"installed_by": ["modules"],
"patch": "modules/nf-core/seqkit/split2/seqkit-split2.diff"
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "e5265c217dcfbff7731c40623aaf07538fdd3e1c",
"installed_by": ["modules"]
},
"trimmomatic": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "d2c5e76f291379f3dd403e48e46ed7e6ba5da744",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_rseqc": {
"branch": "master",
"git_sha": "9eb22e4d3f28c274b7c498a1564581377349a242",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["subworkflows"]
},
"fastq_align_bwaaln": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
}
}
}
}
}
}