diff --git a/CHANGELOG.md b/CHANGELOG.md index 39e92dcc4..49046f9ce 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Added` - [#905](https://github.com/nf-core/mag/pull/905) - Add nf-test snapshot for `test_assembly_input` profile (by @dialvarezs) +- [#908](https://github.com/nf-core/mag/pull/908) - Add nf-test snapshot for `test_single_end` profile (by @dialvarezs) - [#930](https://github.com/nf-core/mag/pull/930) - Add binner SemiBin2 (by @d4straub) ### `Changed` @@ -37,6 +38,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Deprecated` +- [#908](https://github.com/nf-core/mag/pull/908) - Removed local `quast_bins_summary` in favor of `csvtk/concat` (by @dialvarezs) + ## v5.2.0 - Puce Pangolin [2025-11-07] ### `Added` diff --git a/bin/summary_gtdbtk.py b/bin/summary_gtdbtk.py index 370ea4faf..90d7e35dc 100755 --- a/bin/summary_gtdbtk.py +++ b/bin/summary_gtdbtk.py @@ -63,12 +63,7 @@ def parse_args(args=None): def main(args=None): args = parse_args(args) - if ( - not args.summaries - and not args.filtered_bins - and not args.failed_bins - and not args.qc_discarded_bins - ): + if not args.summaries and not args.filtered_bins and not args.failed_bins and not args.qc_discarded_bins: sys.exit( "Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified!" ) @@ -133,9 +128,7 @@ def main(args=None): for file in args.summaries: df_summary = pd.read_csv(file, sep="\t")[columns] # add by GTDB-Tk substracted file extension again to bin names (at least until changed consistently in rest of pipeline) - df_summary["user_genome"] = ( - df_summary["user_genome"].astype(str) + "." + args.extension - ) + df_summary["user_genome"] = df_summary["user_genome"].astype(str) + "." + args.extension df_summary.set_index("user_genome", inplace=True) df_final = df_final.append(df_summary, verify_integrity=True) @@ -171,9 +164,7 @@ def main(args=None): filtered.append(bin_results) df_filtered = pd.DataFrame(filtered, columns=columns) - df_filtered["user_genome"] = ( - df_filtered["user_genome"].astype(str) + "." + args.extension - ) + df_filtered["user_genome"] = df_filtered["user_genome"].astype(str) + "." + args.extension df_filtered.set_index("user_genome", inplace=True) df_final = df_final.append(df_filtered, verify_integrity=True) @@ -209,14 +200,12 @@ def main(args=None): failed.append(bin_results) df_failed = pd.DataFrame(failed, columns=columns) - df_failed["user_genome"] = ( - df_failed["user_genome"].astype(str) + "." + args.extension - ) + df_failed["user_genome"] = df_failed["user_genome"].astype(str) + "." + args.extension df_failed.set_index("user_genome", inplace=True) df_final = df_final.append(df_failed, verify_integrity=True) # write output - df_final.reset_index().rename(columns={"index": "user_genome"}).to_csv( + df_final.reset_index().rename(columns={"index": "user_genome"}).sort_values("user_genome").to_csv( args.out, sep="\t", index=False ) diff --git a/conf/modules.config b/conf/modules.config index 2bc8070ba..7c9cc2b66 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -407,7 +407,7 @@ process { publishDir = [path: { "${params.outdir}/Assembly/${meta.assembler}/QC/${meta.id}" }, mode: params.publish_dir_mode, saveAs: { filename -> filename.equals('versions.yml') ? null : filename }] } - withName: 'QUAST_BINS|QUAST_BINS_SUMMARY' { + withName: 'QUAST_BINS|CONCAT_QUAST_SUMMARY' { publishDir = [ path: { "${params.outdir}/GenomeBinning/QC" }, mode: params.publish_dir_mode, @@ -715,6 +715,7 @@ process { publishDir = [ path: { "${params.outdir}/Ancient_DNA/pydamage/analyze/${meta.assembler}-${meta.id}/" }, mode: params.publish_dir_mode, + saveAs: { filename -> filename.equals('versions.yml') ? null : filename }, ] } @@ -724,6 +725,7 @@ process { publishDir = [ path: { "${params.outdir}/Ancient_DNA/pydamage/filter/${meta.assembler}-${meta.id}/" }, mode: params.publish_dir_mode, + saveAs: { filename -> filename.equals('versions.yml') ? null : filename }, ] } diff --git a/docs/output.md b/docs/output.md index 5d53acb02..059a2cfc6 100644 --- a/docs/output.md +++ b/docs/output.md @@ -577,7 +577,7 @@ For each bin or refined bin the median sequencing depth is computed based on the - `predicted_genes/barrnap.log`: Barrnap log file (ribosomal RNA predictor) - `GenomeBinning/QC/` - `[assembler]-[binner]-[domain]-[refinement]-[sample/group]-quast_summary.tsv`: QUAST output summarized per sample/condition. - - `quast_summary.tsv`: QUAST output for all bins summarized + - `quast_bin_summary.tsv`: QUAST output for all bins summarized diff --git a/modules/local/quast_bins_summary/environment.yml b/modules/local/quast_bins_summary/environment.yml deleted file mode 100644 index 9b926b1ff..000000000 --- a/modules/local/quast_bins_summary/environment.yml +++ /dev/null @@ -1,12 +0,0 @@ ---- -# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json -channels: - - conda-forge - - bioconda -dependencies: - - conda-forge::coreutils=9.5 - - conda-forge::grep=3.11 - - conda-forge::gzip=1.13 - - conda-forge::lbzip2=2.5 - - conda-forge::sed=4.8 - - conda-forge::tar=1.34 diff --git a/modules/local/quast_bins_summary/main.nf b/modules/local/quast_bins_summary/main.nf deleted file mode 100644 index d0f901b73..000000000 --- a/modules/local/quast_bins_summary/main.nf +++ /dev/null @@ -1,32 +0,0 @@ -process QUAST_BINS_SUMMARY { - - conda "${moduleDir}/environment.yml" - container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container - ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/52/52ccce28d2ab928ab862e25aae26314d69c8e38bd41ca9431c67ef05221348aa/data' - : 'community.wave.seqera.io/library/coreutils_grep_gzip_lbzip2_pruned:838ba80435a629f8'}" - - input: - path summaries - - output: - path ("quast_summary.tsv"), emit: summary - path "versions.yml", emit: versions - - script: - """ - QUAST_BIN=\$(echo \"${summaries}\" | sed 's/[][]//g') - IFS=', ' read -r -a quast_bin <<< \"\$QUAST_BIN\" - for quast_file in \"\${quast_bin[@]}\"; do - if ! [ -f "quast_summary.tsv" ]; then - cp "\${quast_file}" "quast_summary.tsv" - else - tail -n +2 "\${quast_file}" >> "quast_summary.tsv" - fi - done - - cat <<-END_VERSIONS > versions.yml - "${task.process}": - cp: \$(cp --version 2>&1 | sed -n 1p | sed 's/cp (GNU coreutils) //') - END_VERSIONS - """ -} diff --git a/subworkflows/local/bin_qc/main.nf b/subworkflows/local/bin_qc/main.nf index 74438ea40..2f8437c2f 100644 --- a/subworkflows/local/bin_qc/main.nf +++ b/subworkflows/local/bin_qc/main.nf @@ -132,6 +132,9 @@ workflow BIN_QC { .filter { meta, _bins -> meta.domain != "eukarya" } + .map { meta, bins -> + [meta, bins.sort { a, b -> a.getBaseName() <=> b.getBaseName() }] + } .multiMap { meta, fa -> reads: [meta, fa] ext: fa.extension.unique().join("") @@ -152,6 +155,9 @@ workflow BIN_QC { ch_checkm_summaries = CHECKM_QA.out.output .map { _meta, summary -> [[id: 'checkm'], summary] } .groupTuple() + .map { meta, summaries -> + [meta, summaries.sort { a, b -> a.getBaseName() <=> b.getBaseName() }] + } ch_multiqc_files = ch_multiqc_files.mix( CHECKM_QA.out.output.map { _meta, summary -> summary }.flatten() ) diff --git a/subworkflows/local/binning/main.nf b/subworkflows/local/binning/main.nf index 1a532e738..6cdaebf3e 100644 --- a/subworkflows/local/binning/main.nf +++ b/subworkflows/local/binning/main.nf @@ -162,7 +162,7 @@ workflow BINNING { // SemiBin2 if (!params.skip_semibin) { ch_semibin_input = ch_assemblies - .map { meta, assembly, bams, bais -> + .map { meta, assembly, bams, _bais -> def meta_new = meta + [binner: 'SemiBin2'] + [sample_count: bams.size()] [meta_new, assembly, bams] } diff --git a/subworkflows/local/catpack/main.nf b/subworkflows/local/catpack/main.nf index 5bb680498..3b90da31e 100644 --- a/subworkflows/local/catpack/main.nf +++ b/subworkflows/local/catpack/main.nf @@ -86,6 +86,7 @@ workflow CATPACK { name: 'bat_summary.tsv', storeDir: "${params.outdir}/Taxonomy/CAT/", keepHeader: true, + sort: 'deep', ) if (!params.cat_allow_unofficial_lineages) { diff --git a/tests/.nftignore b/tests/.nftignore index 7e1cc6cc7..c0673feb5 100644 --- a/tests/.nftignore +++ b/tests/.nftignore @@ -1,6 +1,12 @@ .DS_Store +Ancient_DNA/pydamage/analyze/*/*.csv +Ancient_DNA/variant_calling/*/*.vcf.gz +Annotation/Prokka/**/*.{log,err,gbk,sqn} +Annotation/Prokka/**/*.tmp.* Assembly/MEGAHIT/*.log Assembly/MEGAHIT/QC/*/*.bowtie2.log +Assembly/MEGAHIT/QC/*/QUAST/*.{pdf,html,log} +Assembly/MEGAHIT/QC/*/QUAST/**/*.{pdf,html} GenomeBinning/CONCOCT/stats/*_{original,PCA_components,PCA_transformed}_data_gt1000.csv GenomeBinning/CONCOCT/stats/*_log.txt GenomeBinning/CONCOCT/stats/*.tsv @@ -17,8 +23,13 @@ GenomeBinning/QC/BUSCO/**/*.log GenomeBinning/QC/BUSCO/**/*.txt GenomeBinning/QC/BUSCO/**/short_summary*.{txt,json} GenomeBinning/QC/BUSCO/*/*{-busco.log,-busco.batch_summary.txt} +GenomeBinning/QC/CheckM/*/{checkm.log,lineage.ms} +GenomeBinning/QC/CheckM/*/bins/*/hmmer.{analyze,tree}.txt +GenomeBinning/QC/CheckM/*/storage/* GenomeBinning/QC/CheckM2/**/DIAMOND_RESULTS.tsv GenomeBinning/QC/CheckM2/*/checkm2.log +GenomeBinning/QC/QUAST/*/*.{pdf,html,log} +GenomeBinning/QC/QUAST/*/**/*.{pdf,html} multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt multiqc/multiqc_data/llms-full.txt multiqc/multiqc_data/multiqc_data.json @@ -33,3 +44,5 @@ multiqc/multiqc_report.html pipeline_info/*.{html,json,txt,yml} QC_shortreads/fastqc/*_fastqc.{html,zip} QC_shortreads/remove_phix/*.log +Taxonomy/CAT/**/*.log +VirusIdentification/geNomad/**/*_aggregated_classification.tsv diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 93c7db065..acf5810d8 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -47,6 +47,9 @@ "CONCAT_BUSCO_TSV": { "csvtk": "0.31.0" }, + "CONCAT_QUAST_SUMMARY": { + "csvtk": "0.31.0" + }, "CONVERT_DEPTHS": { "bioawk": 20110810 }, @@ -122,9 +125,6 @@ "metaquast": "5.0.2", "python": "3.7.6" }, - "QUAST_BINS_SUMMARY": { - "cp": 9.5 - }, "SEMIBIN_SINGLEEASYBIN": { "SemiBin": "2.2.0" }, diff --git a/tests/test_assembly_input.nf.test b/tests/test_assembly_input.nf.test index 7cda5b3d2..81eb0d01e 100644 --- a/tests/test_assembly_input.nf.test +++ b/tests/test_assembly_input.nf.test @@ -89,10 +89,10 @@ nextflow_pipeline { workflow.trace.succeeded().size(), removeNextflowVersion("${outputDir}/pipeline_info/nf_core_mag_software_mqc_versions.yml"), ).match() }, - { assert snapshot(stable_name_assembly).match('assembly') }, + { assert snapshot(stable_name_assembly ).match('assembly') }, { assert snapshot(stable_name_annotation, stable_path_annotation).match('annotation') }, - { assert snapshot(stable_name_binning, stable_path_binning ).match('binning') }, - { assert snapshot(stable_name_multiqc, stable_path_multiqc).match('multiqc') }, + { assert snapshot(stable_name_binning, stable_path_binning ).match('binning') }, + { assert snapshot(stable_name_multiqc, stable_path_multiqc ).match('multiqc') }, // FASTA checks { assert concoct_bins.collect { file -> path("${file}").fasta.size() > 0 }.every() }, diff --git a/tests/test_hybrid.nf.test.snap b/tests/test_hybrid.nf.test.snap index a4636c27b..cebbea7f7 100644 --- a/tests/test_hybrid.nf.test.snap +++ b/tests/test_hybrid.nf.test.snap @@ -42,6 +42,9 @@ "CONCAT_BUSCO_TSV": { "csvtk": "0.31.0" }, + "CONCAT_QUAST_SUMMARY": { + "csvtk": "0.31.0" + }, "CONVERT_DEPTHS": { "bioawk": 20110810 }, @@ -114,9 +117,6 @@ "metaquast": "5.0.2", "python": "3.7.6" }, - "QUAST_BINS_SUMMARY": { - "cp": 9.5 - }, "SAMTOOLS_HOSTREMOVED_INDEX": { "samtools": "1.22.1" }, diff --git a/tests/test_longreadonly.nf.test.snap b/tests/test_longreadonly.nf.test.snap index dc0bbc890..51befcbe2 100644 --- a/tests/test_longreadonly.nf.test.snap +++ b/tests/test_longreadonly.nf.test.snap @@ -19,6 +19,9 @@ "CONCAT_BUSCO_TSV": { "csvtk": "0.31.0" }, + "CONCAT_QUAST_SUMMARY": { + "csvtk": "0.31.0" + }, "CONVERT_DEPTHS": { "bioawk": 20110810 }, @@ -95,9 +98,6 @@ "metaquast": "5.0.2", "python": "3.7.6" }, - "QUAST_BINS_SUMMARY": { - "cp": 9.5 - }, "SAMTOOLS_HOSTREMOVED_INDEX": { "samtools": "1.22.1" }, diff --git a/tests/test_single_end.nf.test b/tests/test_single_end.nf.test index 3a3a50d7a..3970dab4e 100644 --- a/tests/test_single_end.nf.test +++ b/tests/test_single_end.nf.test @@ -10,11 +10,115 @@ nextflow_pipeline { when { params { - outdir = "$outputDir" + outdir = "${outputDir}" } } then { + // Output dir: QC_shortreads + def stable_name_qc = getAllFilesFromDir( + params.outdir, include: ['QC_shortreads/**'], relative: true, includeDir: false + ) + def stable_path_qc = getAllFilesFromDir( + params.outdir, include: ['QC_shortreads/**'], ignoreFile: 'tests/.nftignore' + ) + + // Output dir: Assembly + def stable_name_assembly = getAllFilesFromDir( + params.outdir, include: ['Assembly/**'], relative: true, includeDir: false + ) + def stable_path_assembly = getAllFilesFromDir( + params.outdir, include: ['Assembly/**'], ignoreFile: 'tests/.nftignore' + ) + def assembly_quast_logs = getAllFilesFromDir( + params.outdir, include: ['Assembly/MEGAHIT/QC/*/QUAST/quast.log'] + ) + + // Output dir: Ancient_DNA + def stable_name_ancient = getAllFilesFromDir( + params.outdir, include: ['Ancient_DNA/**'], relative: true, includeDir: false + ) + def stable_path_ancient = getAllFilesFromDir( + params.outdir, include: ['Ancient_DNA/**'], ignoreFile: 'tests/.nftignore' + ) + def pydamage_results = getAllFilesFromDir( + params.outdir, include: ['Ancient_DNA/pydamage/analyze/*/*.csv'] + ) + + // Output directory: GenomeBinning + def stable_name_binning = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/**'], relative: true, includeDir: false + ) + def stable_path_binning = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/**'], ignoreFile: 'tests/.nftignore' + ) + def checkm_logs = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/QC/CheckM/*/checkm.log'] + ) + def binning_quast_logs = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/QC/QUAST/*/quast.log'] + ) + def concoct_bins = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/CONCOCT/bins/*.fa.gz'] + ) + def maxbin2_bins = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/MaxBin2/bins/*.fa.gz'] + ) + def maxbin2_unbins = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/MaxBin2/{discarded,unbinned/*}/*.fa.gz'] + ) + def metabat2_bins = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/MetaBAT2/bins/*.fa.gz'] + ) + def metabat2_unbins = getAllFilesFromDir( + params.outdir, include: ['GenomeBinning/MetaBAT2/{discarded,unbinned/*}/*.fa.gz'] + ) + def bin_summary = path("${params.outdir}/GenomeBinning/bin_summary.tsv") + def checkm_summary = path("${params.outdir}/GenomeBinning/QC/checkm_summary.tsv") + def quast_bin_summary = path("${params.outdir}/GenomeBinning/QC/quast_bin_summary.tsv") + + // Output dir: Annotation + def stable_name_annotation = getAllFilesFromDir( + params.outdir, + include: ['Annotation/**'], + ignore: ['Annotation/Prokka/**/*.tmp.*'], + relative: true, + includeDir: false + ) + def stable_path_annotation = getAllFilesFromDir( + params.outdir, include: ['Annotation/**'], ignoreFile: 'tests/.nftignore' + ) + def prokka_sequences = getAllFilesFromDir( + params.outdir, include: ['Annotation/Prokka/**/*.{fna.faa}'] + ) + def prokka_logs = getAllFilesFromDir( + params.outdir, include: ['Annotation/Prokka/**/*.log'] + ) + + // Output dir: Taxonomy + def stable_name_taxonomy = getAllFilesFromDir( + params.outdir, include: ['Taxonomy/**'], relative: true, includeDir: false + ) + def stable_path_taxonomy = getAllFilesFromDir( + params.outdir, include: ['Taxonomy/**'], ignoreFile: 'tests/.nftignore' + ) + def bat_logs = getAllFilesFromDir( + params.outdir, include: ['Taxonomy/CAT/**/*.log'] + ) + def bat_summary = path("${params.outdir}/Taxonomy/CAT/bat_summary.tsv") + def gtdbtk_summary = path("${params.outdir}/Taxonomy/GTDB-Tk/gtdbtk_summary.tsv") + + // Output dir: VirusIdentification + def stable_name_viral = getAllFilesFromDir( + params.outdir, include: ['VirusIdentification/**'], relative: true, includeDir: false + ) + def stable_path_viral = getAllFilesFromDir( + params.outdir, include: ['VirusIdentification/**'], ignoreFile: 'tests/.nftignore' + ) + def genomad_results = getAllFilesFromDir( + params.outdir, include: ['VirusIdentification/geNomad/**/*_aggregated_classification.tsv'] + ) + // Output directory: multiqc def stable_name_multiqc = getAllFilesFromDir( params.outdir, include: ['multiqc/**'], relative: true, includeDir: false @@ -22,24 +126,76 @@ nextflow_pipeline { def stable_path_multiqc = getAllFilesFromDir( params.outdir, include: ['multiqc/**'], ignoreFile: 'tests/.nftignore' ) - // // stable_name: All files + folders in ${params.outdir}/ with a stable name - // def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}']) - // // stable_path: All files in ${params.outdir}/ with stable content - // def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore') + + assert workflow.success assertAll( - { assert workflow.success}, { assert snapshot( - // Number of successful tasks workflow.trace.succeeded().size(), - // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions removeNextflowVersion("$outputDir/pipeline_info/nf_core_mag_software_mqc_versions.yml"), - // // All stable path name, with a relative path - // stable_name, - // // All files with stable contents - // stable_path ).match() }, - { assert snapshot(stable_name_multiqc, stable_path_multiqc).match('multiqc') }, + { assert snapshot(stable_name_ancient, stable_path_ancient ).match('ancient') }, + { assert snapshot(stable_name_annotation, stable_path_annotation).match('annotation') }, + { assert snapshot(stable_name_assembly, stable_path_assembly ).match('assembly') }, + { assert snapshot(stable_name_binning, stable_path_binning ).match('binning') }, + { assert snapshot(stable_name_multiqc, stable_path_multiqc ).match('multiqc') }, + { assert snapshot(stable_name_qc, stable_path_qc ).match('qc') }, + { assert snapshot(stable_name_viral, stable_path_viral ).match('viral') }, + { assert snapshot(stable_name_taxonomy, stable_path_taxonomy ).match('taxonomy') }, + + // FASTA checks + { assert concoct_bins.collect { file -> path("${file}").fasta.size() > 0 }.every() }, + { assert maxbin2_bins.collect { file -> path("${file}").fasta.size() > 0 }.every() }, + { assert maxbin2_unbins.collect { file -> path("${file}").fasta.size() >= 0 }.every() }, + { assert metabat2_bins.collect { file -> path("${file}").fasta.size() > 0 }.every() }, + { assert metabat2_unbins.collect { file -> path("${file}").fasta.size() >= 0 }.every() }, + { assert prokka_sequences.collect { file -> path("${file}").fasta.size() >= 0 }.every() }, + + // Summary checks + { assert bin_summary.csv(sep: '\t').rowCount > 0 }, + { assert bin_summary.csv(sep: '\t').rowCount == concoct_bins.size() + maxbin2_bins.size() + metabat2_bins.size() }, + { assert checkm_summary.csv(sep: '\t').rowCount > 0 }, + { assert quast_bin_summary.csv(sep: '\t').rowCount > 0 }, + { assert bat_summary.text.readLines().size() > 1 }, // CAT output is not a proper TSV + { assert gtdbtk_summary.csv(sep: '\t').rowCount > 0 }, + { assert snapshot( + bin_summary.csv(sep: '\t').rowCount, + checkm_summary.csv(sep: '\t').rowCount, + quast_bin_summary.csv(sep: '\t').rowCount, + bat_summary.text.readLines().size() - 1, + gtdbtk_summary.csv(sep: '\t').rowCount + ).match("summary-rows") }, + + // Log checks + { assert assembly_quast_logs.collect { + log -> log.readLines().any { it.contains('Finished:') } + }.every() + }, + { assert binning_quast_logs.collect { + log -> log.readLines().any { it.contains('Finished:') } + }.every() + }, + { assert checkm_logs.collect { + log -> log.readLines().any { it.contains('QA information written to:') } + }.every() + }, + { assert prokka_logs.collect { + log -> log.readLines().any { it.contains('Annotation finished successfully.') } + }.every() + }, + { assert bat_logs.collect { + log -> log.readLines().any { it.contains('BAT is done!') } + }.every() + }, + // Other checks + { assert pydamage_results.collect { + file -> path("${file}").csv(sep: ',').rowCount > 0 + }.every() + }, + { assert genomad_results.collect { + file -> path("${file}").csv(sep: '\t').rowCount > 0 + }.every() + }, ) } } diff --git a/tests/test_single_end.nf.test.snap b/tests/test_single_end.nf.test.snap index 176b3aa58..2a48b7c5a 100644 --- a/tests/test_single_end.nf.test.snap +++ b/tests/test_single_end.nf.test.snap @@ -1,4 +1,1880 @@ { + "annotation": { + "content": [ + [ + "Annotation/Prodigal/MEGAHIT/test_minigut/MEGAHIT-test_minigut_prodigal.faa.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut/MEGAHIT-test_minigut_prodigal.fna.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut/MEGAHIT-test_minigut_prodigal.gff.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut/MEGAHIT-test_minigut_prodigal_all.txt.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut_sample2/MEGAHIT-test_minigut_sample2_prodigal.faa.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut_sample2/MEGAHIT-test_minigut_sample2_prodigal.fna.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut_sample2/MEGAHIT-test_minigut_sample2_prodigal.gff.gz", + "Annotation/Prodigal/MEGAHIT/test_minigut_sample2/MEGAHIT-test_minigut_sample2_prodigal_all.txt.gz", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_0/MEGAHIT-CONCOCT-test_minigut_0.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_1/MEGAHIT-CONCOCT-test_minigut_1.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_10/MEGAHIT-CONCOCT-test_minigut_10.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_11/MEGAHIT-CONCOCT-test_minigut_11.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_12/MEGAHIT-CONCOCT-test_minigut_12.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_13/MEGAHIT-CONCOCT-test_minigut_13.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_14/MEGAHIT-CONCOCT-test_minigut_14.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_15/MEGAHIT-CONCOCT-test_minigut_15.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_2/MEGAHIT-CONCOCT-test_minigut_2.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_3/MEGAHIT-CONCOCT-test_minigut_3.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_4/MEGAHIT-CONCOCT-test_minigut_4.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_5/MEGAHIT-CONCOCT-test_minigut_5.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_6/MEGAHIT-CONCOCT-test_minigut_6.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_7/MEGAHIT-CONCOCT-test_minigut_7.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_8/MEGAHIT-CONCOCT-test_minigut_8.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_9/MEGAHIT-CONCOCT-test_minigut_9.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_0/MEGAHIT-CONCOCT-test_minigut_sample2_0.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_1/MEGAHIT-CONCOCT-test_minigut_sample2_1.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_2/MEGAHIT-CONCOCT-test_minigut_sample2_2.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_3/MEGAHIT-CONCOCT-test_minigut_sample2_3.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_4/MEGAHIT-CONCOCT-test_minigut_sample2_4.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_5/MEGAHIT-CONCOCT-test_minigut_sample2_5.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_6/MEGAHIT-CONCOCT-test_minigut_sample2_6.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-CONCOCT-test_minigut_sample2_7/MEGAHIT-CONCOCT-test_minigut_sample2_7.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.001/MEGAHIT-MaxBin2-test_minigut.001.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MaxBin2-test_minigut.002/MEGAHIT-MaxBin2-test_minigut.002.txt", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.err", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.faa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.ffn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.fna", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.fsa", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.gbk", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.gff", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.log", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.sqn", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.tbl", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.tsv", + "Annotation/Prokka/MEGAHIT/MEGAHIT-MetaBAT2-test_minigut.1/MEGAHIT-MetaBAT2-test_minigut.1.txt" + ], + [ + "MEGAHIT-test_minigut_prodigal.faa.gz:md5,7f9badfd9b6bb3443ca80edd48892bca", + "MEGAHIT-test_minigut_prodigal.fna.gz:md5,89d9f55e7227ddbe4791fc8741edef2d", + "MEGAHIT-test_minigut_prodigal.gff.gz:md5,fdaededfd00031e98b8e745f62e751ba", + "MEGAHIT-test_minigut_prodigal_all.txt.gz:md5,13d8d2db1d0dbca1ab7521669bbca4ea", + "MEGAHIT-test_minigut_sample2_prodigal.faa.gz:md5,7ff940e0f872eaccf8fa4c9f5bb166ff", + "MEGAHIT-test_minigut_sample2_prodigal.fna.gz:md5,a79ed785adfad744273f52c257ecc1ea", + "MEGAHIT-test_minigut_sample2_prodigal.gff.gz:md5,ff3bd595d260ced7a165fa237cc54fdb", + "MEGAHIT-test_minigut_sample2_prodigal_all.txt.gz:md5,3f98546d9484c0f1ffe1080c5421dde0", + "MEGAHIT-CONCOCT-test_minigut_0.faa:md5,17fd03a6c8eaaff8f8d83e509cadc588", + "MEGAHIT-CONCOCT-test_minigut_0.ffn:md5,32455e340cc18c655cf6b151346ee534", + "MEGAHIT-CONCOCT-test_minigut_0.fna:md5,8e60b88bc409daf9d05421cdbcadd1e6", + "MEGAHIT-CONCOCT-test_minigut_0.fsa:md5,7a8e6a84451b1a21bf1f5f67b2c1bbe1", + "MEGAHIT-CONCOCT-test_minigut_0.gff:md5,d8682dfd1e6b15ceec04fb6b556ee41b", + "MEGAHIT-CONCOCT-test_minigut_0.tbl:md5,70a6ebfe4591eff4aa9f8a5aaf653166", + "MEGAHIT-CONCOCT-test_minigut_0.tsv:md5,e1c2f7be747760e46bcb51432f56b29f", + "MEGAHIT-CONCOCT-test_minigut_0.txt:md5,cdc15cc3b8603532d74625d624fce96b", + "MEGAHIT-CONCOCT-test_minigut_1.faa:md5,26aedaf1654a4f2945d71da7a4b5fc48", + "MEGAHIT-CONCOCT-test_minigut_1.ffn:md5,3b275d21207f6b3f7e74140339bf2dad", + "MEGAHIT-CONCOCT-test_minigut_1.fna:md5,b5745eafd4da3c243f3297f1c50d5890", + "MEGAHIT-CONCOCT-test_minigut_1.fsa:md5,187cd609740a850ad4f144d196ba779d", + "MEGAHIT-CONCOCT-test_minigut_1.gff:md5,fb64a0d525f38a8f35178f3f4cc59373", + "MEGAHIT-CONCOCT-test_minigut_1.tbl:md5,71b5c77bbf03b36a6830ec9d676bd39e", + "MEGAHIT-CONCOCT-test_minigut_1.tsv:md5,84cbe9c062c4e4ccd2c9e81ec99b97c3", + "MEGAHIT-CONCOCT-test_minigut_1.txt:md5,185e7471023b6ad7295fd70aab8cada1", + "MEGAHIT-CONCOCT-test_minigut_10.faa:md5,5410e8fbc412ea02424ad6f15b3c0dc4", + "MEGAHIT-CONCOCT-test_minigut_10.ffn:md5,e317ef163d5704b353995da40aaad300", + "MEGAHIT-CONCOCT-test_minigut_10.fna:md5,35b071479426890870bb052ad47d9911", + "MEGAHIT-CONCOCT-test_minigut_10.fsa:md5,6fc56053a4d88f0bfce3c5e1638bcaab", + "MEGAHIT-CONCOCT-test_minigut_10.gff:md5,80811277d1c8cd6623b1df9bdb89a011", + "MEGAHIT-CONCOCT-test_minigut_10.tbl:md5,6aa3de1c08595d489fc16fb5a03732fa", + "MEGAHIT-CONCOCT-test_minigut_10.tsv:md5,54b01959041b79fc9c22c8ec9e8edb7b", + "MEGAHIT-CONCOCT-test_minigut_10.txt:md5,b0e738fc4f70808fb1ab0294e87c28ac", + "MEGAHIT-CONCOCT-test_minigut_11.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_11.ffn:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_11.fna:md5,b295a22ea424c5a0d48a8ed1108b20fa", + "MEGAHIT-CONCOCT-test_minigut_11.fsa:md5,8e1a414097dff59cec85b309891ad46a", + "MEGAHIT-CONCOCT-test_minigut_11.gff:md5,9749b162351f6c1f59640ed2f3c53619", + "MEGAHIT-CONCOCT-test_minigut_11.tbl:md5,c26288902d0a47a70e1c19e8af60cdbe", + "MEGAHIT-CONCOCT-test_minigut_11.tsv:md5,ebca233eadd7ec0220045d90b250cc24", + "MEGAHIT-CONCOCT-test_minigut_11.txt:md5,b3c7c901e79fd5446221c024d19296c5", + "MEGAHIT-CONCOCT-test_minigut_12.faa:md5,3ab379cc4619d8e3ba338f69197ff911", + "MEGAHIT-CONCOCT-test_minigut_12.ffn:md5,2b0c97f53c5b23cf0cf4828c261cf4d2", + "MEGAHIT-CONCOCT-test_minigut_12.fna:md5,e4a27c33bd63d07a505a53da2cf77202", + "MEGAHIT-CONCOCT-test_minigut_12.fsa:md5,7b7c9ea002561a37dfb491628d268de6", + "MEGAHIT-CONCOCT-test_minigut_12.gff:md5,a48d3ff1d4985f9035e09de304553120", + "MEGAHIT-CONCOCT-test_minigut_12.tbl:md5,ff1bec7912775fd90d76cefaa7d613b8", + "MEGAHIT-CONCOCT-test_minigut_12.tsv:md5,fa269e0a34f8b8d33b05dbd4d87f7185", + "MEGAHIT-CONCOCT-test_minigut_12.txt:md5,aaad26a9c88d4f25538478a920086bb4", + "MEGAHIT-CONCOCT-test_minigut_13.faa:md5,5062939ec9a6d3cc76433ac30162aa1d", + "MEGAHIT-CONCOCT-test_minigut_13.ffn:md5,5f051b8a5543a697e0c205d705f2b15c", + "MEGAHIT-CONCOCT-test_minigut_13.fna:md5,36ef959344c8f00c47bd7090951fb2da", + "MEGAHIT-CONCOCT-test_minigut_13.fsa:md5,f594347ef76c6155f83e2f655f1c9a75", + "MEGAHIT-CONCOCT-test_minigut_13.gff:md5,7b4cc9c734cd4dae07f08ae6506db817", + "MEGAHIT-CONCOCT-test_minigut_13.tbl:md5,b8e289b66b6fc4f657fc2a78ed759cbd", + "MEGAHIT-CONCOCT-test_minigut_13.tsv:md5,26d92776bce6f1f37c670ad23be3d965", + "MEGAHIT-CONCOCT-test_minigut_13.txt:md5,0f4d5921b9fbb9f88cda486dcd188306", + "MEGAHIT-CONCOCT-test_minigut_14.faa:md5,aee5fe27a83ae8dc319a9b2488ed2172", + "MEGAHIT-CONCOCT-test_minigut_14.ffn:md5,78e79391ae4aac48140aa66b2f01895d", + "MEGAHIT-CONCOCT-test_minigut_14.fna:md5,41e3c773e4d8cae236530c128e3bf981", + "MEGAHIT-CONCOCT-test_minigut_14.fsa:md5,6dc89daa5f3ef3bee9169fd6ce07994c", + "MEGAHIT-CONCOCT-test_minigut_14.gff:md5,68cf3ec14f57a55bd8e3a503dddd5441", + "MEGAHIT-CONCOCT-test_minigut_14.tbl:md5,ef9a71e5314959b5070f9f27c819648e", + "MEGAHIT-CONCOCT-test_minigut_14.tsv:md5,157eff7aa25854dc5ac4dec7e4f3f6d6", + "MEGAHIT-CONCOCT-test_minigut_14.txt:md5,91d056dc9579d6f661a283afa21a7e51", + "MEGAHIT-CONCOCT-test_minigut_15.faa:md5,61903a6bde264c151da98a71fe55caa6", + "MEGAHIT-CONCOCT-test_minigut_15.ffn:md5,3c57da67d8f0e4cac43ac7880e1ca8ea", + "MEGAHIT-CONCOCT-test_minigut_15.fna:md5,da46bdea9ae9fd5edc76497fafaeb467", + "MEGAHIT-CONCOCT-test_minigut_15.fsa:md5,0f7d504351508b221b20ba49ad7d8d81", + "MEGAHIT-CONCOCT-test_minigut_15.gff:md5,5f5363450e4044e103dd163cdd9a9c03", + "MEGAHIT-CONCOCT-test_minigut_15.tbl:md5,0f2beb963949646a5ed8c60b543158d9", + "MEGAHIT-CONCOCT-test_minigut_15.tsv:md5,fb9a253fc86e2a4df3e3616b29ae605a", + "MEGAHIT-CONCOCT-test_minigut_15.txt:md5,cc8c7cb61ac67a121cd696b07b101242", + "MEGAHIT-CONCOCT-test_minigut_2.faa:md5,602ab40cd6639dc303979c54956178ce", + "MEGAHIT-CONCOCT-test_minigut_2.ffn:md5,5ae566c7596fd238f5e9666843ca274d", + "MEGAHIT-CONCOCT-test_minigut_2.fna:md5,fcfc94aef2c693ec084d7f9c42041afb", + "MEGAHIT-CONCOCT-test_minigut_2.fsa:md5,270bfbe42eb81f91581868860f6f71ff", + "MEGAHIT-CONCOCT-test_minigut_2.gff:md5,ccf0cd4beab812242389c8aac1fdb42a", + "MEGAHIT-CONCOCT-test_minigut_2.tbl:md5,b13b3ceb3e8a2c2252a5c46c1b7dc58c", + "MEGAHIT-CONCOCT-test_minigut_2.tsv:md5,e94713fe31aacf6e1235e4f7e9a160f8", + "MEGAHIT-CONCOCT-test_minigut_2.txt:md5,770a9cdd58160628ffc8ae5bc8977bbb", + "MEGAHIT-CONCOCT-test_minigut_3.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_3.ffn:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_3.fna:md5,6c40378224379cf5cd1746adc6832a00", + "MEGAHIT-CONCOCT-test_minigut_3.fsa:md5,17b729c88e0e05c02d792c26147c1600", + "MEGAHIT-CONCOCT-test_minigut_3.gff:md5,f2a8b60f8ce075f20a7fc4e87a1a6347", + "MEGAHIT-CONCOCT-test_minigut_3.tbl:md5,52c07813168a83eb3e53f8cee9606056", + "MEGAHIT-CONCOCT-test_minigut_3.tsv:md5,ebca233eadd7ec0220045d90b250cc24", + "MEGAHIT-CONCOCT-test_minigut_3.txt:md5,5be1366ce28609ecad18b310c792ba72", + "MEGAHIT-CONCOCT-test_minigut_4.faa:md5,2e62250d37b2a77d6f85ac80ec83dec1", + "MEGAHIT-CONCOCT-test_minigut_4.ffn:md5,2b9a82bf3b12b962ff70f3861aea26e8", + "MEGAHIT-CONCOCT-test_minigut_4.fna:md5,893c71e1340a36f012365cd5528932c8", + "MEGAHIT-CONCOCT-test_minigut_4.fsa:md5,8d313f0ba4e8597f774f38350be2b216", + "MEGAHIT-CONCOCT-test_minigut_4.gff:md5,4a2d164bfd8b776c786ee04493a22296", + "MEGAHIT-CONCOCT-test_minigut_4.tbl:md5,d6462c9192e23c23081d98014dca2929", + "MEGAHIT-CONCOCT-test_minigut_4.tsv:md5,4b753f33318cf1e130f372f3e530e0e3", + "MEGAHIT-CONCOCT-test_minigut_4.txt:md5,84d99c41b9f001f0f67b5df2b19c0bc3", + "MEGAHIT-CONCOCT-test_minigut_5.faa:md5,2847ead3aa2dbf7cc73095e36217aa3e", + "MEGAHIT-CONCOCT-test_minigut_5.ffn:md5,a238bbada40e8794b160b6554b6a3cd0", + "MEGAHIT-CONCOCT-test_minigut_5.fna:md5,d3a618ef345f532ff2366c1cfb052143", + "MEGAHIT-CONCOCT-test_minigut_5.fsa:md5,cc110fc54d6f28f67ab78be155162848", + "MEGAHIT-CONCOCT-test_minigut_5.gff:md5,00ca1f00d15c86268a9805fa7bc109c7", + "MEGAHIT-CONCOCT-test_minigut_5.tbl:md5,bc15e8658fe3bd171272a213a15f4196", + "MEGAHIT-CONCOCT-test_minigut_5.tsv:md5,68cb35d33fece84e662cecae4fa56660", + "MEGAHIT-CONCOCT-test_minigut_5.txt:md5,83e029b2ede157492d53ee143d4a847b", + "MEGAHIT-CONCOCT-test_minigut_6.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_6.ffn:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_6.fna:md5,bc16bb44b8af87f91f94e8b8f228a561", + "MEGAHIT-CONCOCT-test_minigut_6.fsa:md5,0d2887049ff77b83c171e39105ba2cdd", + "MEGAHIT-CONCOCT-test_minigut_6.gff:md5,f566832b347b62254ac5532d5c789b26", + "MEGAHIT-CONCOCT-test_minigut_6.tbl:md5,3c050960d0cfefc34aff6968a240f019", + "MEGAHIT-CONCOCT-test_minigut_6.tsv:md5,ebca233eadd7ec0220045d90b250cc24", + "MEGAHIT-CONCOCT-test_minigut_6.txt:md5,c608581aa7eb97c66ed269d8912bc9ed", + "MEGAHIT-CONCOCT-test_minigut_7.faa:md5,2e0b12e42550ef000be684cd546402f1", + "MEGAHIT-CONCOCT-test_minigut_7.ffn:md5,7f3d0f6fc704d464d1efab8bfbe5b82d", + "MEGAHIT-CONCOCT-test_minigut_7.fna:md5,d14b611eec553e222f2270b44b6b8943", + "MEGAHIT-CONCOCT-test_minigut_7.fsa:md5,ef79f80db13e85c2bef22dc5e5702866", + "MEGAHIT-CONCOCT-test_minigut_7.gff:md5,3b91a138fc56955900af73570aa0741d", + "MEGAHIT-CONCOCT-test_minigut_7.tbl:md5,381091ca4ca9f1899ccb5239ba40fdcb", + "MEGAHIT-CONCOCT-test_minigut_7.tsv:md5,f2c5bc4cc6464827f2c371b89fc15abf", + "MEGAHIT-CONCOCT-test_minigut_7.txt:md5,4224c14ed2a01627e1daaf8026819e40", + "MEGAHIT-CONCOCT-test_minigut_8.faa:md5,c7d398dbfd8226864d014b97695356b1", + "MEGAHIT-CONCOCT-test_minigut_8.ffn:md5,04a28d221d9991eeefbee171d118ad79", + "MEGAHIT-CONCOCT-test_minigut_8.fna:md5,d4896deb795c172b1509fab25dfffe5f", + "MEGAHIT-CONCOCT-test_minigut_8.fsa:md5,9c073f29ddcd367bd91e7ebb3ebd5e87", + "MEGAHIT-CONCOCT-test_minigut_8.gff:md5,6dee32c38fa17065483dae384db283fb", + "MEGAHIT-CONCOCT-test_minigut_8.tbl:md5,23437795a5689d87a7336b0c9ecbfd57", + "MEGAHIT-CONCOCT-test_minigut_8.tsv:md5,293dc721443f4f52564a960789933efd", + "MEGAHIT-CONCOCT-test_minigut_8.txt:md5,bd94c00241baea4c7bf48ff21cb0545a", + "MEGAHIT-CONCOCT-test_minigut_9.faa:md5,32791e3eab0cb51104d035a6c0893c74", + "MEGAHIT-CONCOCT-test_minigut_9.ffn:md5,5b6a6e43f0cc254d021b56aa13b73df2", + "MEGAHIT-CONCOCT-test_minigut_9.fna:md5,6f704c8879bb335cd1ac1dc35abbced2", + "MEGAHIT-CONCOCT-test_minigut_9.fsa:md5,98aa141dbe6b69ae02f0b35e3286bb2a", + "MEGAHIT-CONCOCT-test_minigut_9.gff:md5,73fd024a093a66b31d2024a84603541d", + "MEGAHIT-CONCOCT-test_minigut_9.tbl:md5,7f0688c21c0d51c9c8f7086a5be60903", + "MEGAHIT-CONCOCT-test_minigut_9.tsv:md5,ebf19d649470f40fcb67f1a6a16cc227", + "MEGAHIT-CONCOCT-test_minigut_9.txt:md5,2212cf11816cec6c420ac8e05e94dde4", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.faa:md5,16e3fae58bc070b4d7aedc3258372635", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.ffn:md5,b16ec3401628699b6d9a88a91d72c8ea", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.fna:md5,d028ddb3f54144409e08ab25033c6213", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.fsa:md5,23fa3ebdb1940ed012212d772b3b5612", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.gff:md5,9ec118fa3a12654e837caec729a4ea40", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.tbl:md5,7784b4f4b5e43838196a90c8315c49a2", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.tsv:md5,104fc80855d4a4e6133d75d25882c68b", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.txt:md5,d1c978fb6361419f4fc35855fe594665", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.faa:md5,26d34c78de13284466b1205721d46ce5", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.ffn:md5,c42f1e238e623e0c8de07372c1bcbab6", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.fna:md5,dcebc1b19115c1f8eef2584cb069ba52", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.fsa:md5,ad313eed0eebcba657e83d9e8052cfec", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.gff:md5,a7642b128ffdf84b37d6142b3d920066", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.tbl:md5,a2971fe9cf47b7ae976992cb620aa7a6", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.tsv:md5,953d0a172f092dea6c501ee240cfe9ec", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.txt:md5,fd1eae8290313fff7e45507dfb77e9c2", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.faa:md5,aef16e443bfb37e81d73cb0baf8552d6", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.ffn:md5,e7056a22b9a31642c25038390838543e", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.fna:md5,327fd92572b692bff214c29d1cf09cde", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.fsa:md5,67301a04c49d8d0dd899cafadeaac7a5", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.gff:md5,b6d7a27d62f7ddb1a5d831a07cc418cf", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.tbl:md5,4f22e559275954932a675874c5527aab", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.tsv:md5,329fe571f832d92365e2c6659abe2274", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.txt:md5,7eb7da688b3d162ca9f6abd5732367e0", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.ffn:md5,8c70deb54443841c21a41242adee95a3", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.fna:md5,57fdca9c69a404da4aa3d7863569e9ad", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.fsa:md5,26a37d6633876089ede97977251b2443", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.gff:md5,6114f89e0e79da11d63957cc58480f09", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.tbl:md5,54e0d92f69bb432a073568cd3c15e3e8", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.tsv:md5,e085089fcf7b72d0b134a7a3a894fe15", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.txt:md5,9f85516f687096a99998e4ce892992a5", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.ffn:md5,b6785b587cd5e3fa4c6ede4a14b8f393", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.fna:md5,7454f9a672b817e469c86e107dd33e82", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.fsa:md5,024d4c4a3f151870d5ed841c029b046c", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.gff:md5,ef7cbb737513073d47b12006335f97e3", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.tbl:md5,2b4c5d259b1b007ea7cb181e7b188bdc", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.tsv:md5,bf186cf84ce59e784142f6fa5c9fb823", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.txt:md5,b72ed79b760f3fb5483331072e08dd20", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.faa:md5,2dfc566087134246917416590f6b64ed", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.ffn:md5,8d45e3569de88f1d27d3bdbdc12b06dc", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.fna:md5,2eefb6d25566dae9479d33d7723a45bc", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.fsa:md5,94405fc8adba6cb123d4f28e9c9b69eb", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.gff:md5,32caad1368709d8d974b3ef56a29f681", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.tbl:md5,4d1d201b04f5b71fb2bee7057a3ecc91", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.tsv:md5,abee82415e018cf33391582946a524ef", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.txt:md5,fbb3f9d026c46d07d0a624bfdb84e958", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.ffn:md5,c06e448eb23213e9ad20c7b6f2103aae", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.fna:md5,f6c3b6999a6c7ec07375d8c41c6f359c", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.fsa:md5,cd41792eb6bf32295fcc6468a14dcd2d", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.gff:md5,7b4f7208f0d690d19ad9d65f21df741e", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.tbl:md5,ea2f4784d179cbff138a5496dfdccf54", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.tsv:md5,c7483c8f8c44d4aa17267cfcb9304b35", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.txt:md5,0d8ea8384c89a870ab328af9ceb7b066", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.faa:md5,4aca4d776f936ce3c266c8a2750c7b57", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.ffn:md5,b04e2db8a477bb33c438c7de5f56872a", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.fna:md5,6921b63a523c46ae39dd0ed5986d4788", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.fsa:md5,e399ea2a92ca937a4068c2bf6064a9d2", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.gff:md5,979c70a9cb646424bf00800b464acb67", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.tbl:md5,6c7947b44ab405738a64ee180fe47f35", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.tsv:md5,9c8cd70672e8a0182d56c671c84650f8", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.txt:md5,d3ff3daa0261c56fe07ca12d999b2602", + "MEGAHIT-MaxBin2-test_minigut.001.faa:md5,07e215f96a805ac4f40877c67abf150b", + "MEGAHIT-MaxBin2-test_minigut.001.ffn:md5,05a3ddf22eba8f201967901d4f97db8e", + "MEGAHIT-MaxBin2-test_minigut.001.fna:md5,a60966e06d2296cb30e136ce5ba9ceeb", + "MEGAHIT-MaxBin2-test_minigut.001.fsa:md5,6a42dc1f78092d29b04cccdbe8f9c454", + "MEGAHIT-MaxBin2-test_minigut.001.gff:md5,256386aa7388ef228b9adfb377ccf8ac", + "MEGAHIT-MaxBin2-test_minigut.001.tbl:md5,44d26681473eee7d91460a12038b7529", + "MEGAHIT-MaxBin2-test_minigut.001.tsv:md5,f65517793e0a3ba567b806d3dd8918d3", + "MEGAHIT-MaxBin2-test_minigut.001.txt:md5,977f582bc450776d2562f7e8c22d37e3", + "MEGAHIT-MaxBin2-test_minigut.002.faa:md5,dcd9b1e08dfa975cc477388ce4712b27", + "MEGAHIT-MaxBin2-test_minigut.002.ffn:md5,3108de8974626f83bf0b48cf479d369d", + "MEGAHIT-MaxBin2-test_minigut.002.fna:md5,b04a813b8c792389879dca1db2c0fa79", + "MEGAHIT-MaxBin2-test_minigut.002.fsa:md5,b6428af5ea83e602406aed6663c4b7c1", + "MEGAHIT-MaxBin2-test_minigut.002.gff:md5,7eedcabe90a351bb69a96a04ce6bc295", + "MEGAHIT-MaxBin2-test_minigut.002.tbl:md5,8e5499ce0a785fb7c04aadd188f19726", + "MEGAHIT-MaxBin2-test_minigut.002.tsv:md5,8fdbc06d91376f1a81c14b76c1c01f46", + "MEGAHIT-MaxBin2-test_minigut.002.txt:md5,41a675e30a29a9e79babf5f10124302d", + "MEGAHIT-MetaBAT2-test_minigut.1.faa:md5,68e654a60c8fa90b3a26d284f74061b6", + "MEGAHIT-MetaBAT2-test_minigut.1.ffn:md5,91c6ecadbd56d267c0c73eabaf2095f4", + "MEGAHIT-MetaBAT2-test_minigut.1.fna:md5,3e647b1f5d9d4155ae5e34527bbcf260", + "MEGAHIT-MetaBAT2-test_minigut.1.fsa:md5,1a7a0601365ce837b947a46ff640a506", + "MEGAHIT-MetaBAT2-test_minigut.1.gff:md5,46cb2c1902238a97e01c170667362ae5", + "MEGAHIT-MetaBAT2-test_minigut.1.tbl:md5,073ef917e0b8224ae00460b8841d05da", + "MEGAHIT-MetaBAT2-test_minigut.1.tsv:md5,dbfe8d15c30be92ea87e6f37ad94d0a4", + "MEGAHIT-MetaBAT2-test_minigut.1.txt:md5,19fc9de937e7dae80ea2d061cc9a4644" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T22:14:29.389477815" + }, + "qc": { + "content": [ + [ + "QC_shortreads/adapterremoval/test_minigut/test_minigut_run0_ar2.settings", + "QC_shortreads/adapterremoval/test_minigut_sample2/test_minigut_sample2_run0_ar2.settings", + "QC_shortreads/fastqc/test_minigut_run0_raw_fastqc.html", + "QC_shortreads/fastqc/test_minigut_run0_trimmed_fastqc.html", + "QC_shortreads/fastqc/test_minigut_sample2_run0_raw_fastqc.html", + "QC_shortreads/fastqc/test_minigut_sample2_run0_trimmed_fastqc.html", + "QC_shortreads/remove_host/test_minigut_run0_host_removed.bowtie2.log", + "QC_shortreads/remove_host/test_minigut_sample2_run0_host_removed.bowtie2.log", + "QC_shortreads/remove_phix/test_minigut_run0_phix_removed.bowtie2.log", + "QC_shortreads/remove_phix/test_minigut_sample2_run0_phix_removed.bowtie2.log" + ], + [ + "test_minigut_run0_ar2.settings:md5,f8173799aaa7d6022400e8153a30b800", + "test_minigut_sample2_run0_ar2.settings:md5,14500d89575945c2975ccf0431a9dd83", + "test_minigut_run0_host_removed.bowtie2.log:md5,e92972f277d907289dbdeba402690e6e", + "test_minigut_sample2_run0_host_removed.bowtie2.log:md5,ce114382b98cd86beeea13aeeeee2bbd" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T21:15:52.468158396" + }, + "assembly": { + "content": [ + [ + "Assembly/MEGAHIT/MEGAHIT-test_minigut.contigs.fa.gz", + "Assembly/MEGAHIT/MEGAHIT-test_minigut.log", + "Assembly/MEGAHIT/MEGAHIT-test_minigut_sample2.contigs.fa.gz", + "Assembly/MEGAHIT/MEGAHIT-test_minigut_sample2.log", + "Assembly/MEGAHIT/QC/test_minigut/MEGAHIT-test_minigut.bowtie2.log", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/basic_stats/GC_content_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/basic_stats/MEGAHIT-test_minigut_GC_content_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/basic_stats/Nx_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/basic_stats/cumulative_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/icarus.html", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/icarus_viewers/contig_size_viewer.html", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/metaquast.log", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/predicted_genes/MEGAHIT-test_minigut.rna.gff", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/predicted_genes/barrnap.log", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/quast.log", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report.html", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report.pdf", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report.tex", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report.tsv", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report.txt", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/report_rawassemblies.tsv", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/transposed_report.tex", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/transposed_report.tsv", + "Assembly/MEGAHIT/QC/test_minigut/QUAST/transposed_report.txt", + "Assembly/MEGAHIT/QC/test_minigut_sample2/MEGAHIT-test_minigut_sample2.bowtie2.log", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/basic_stats/GC_content_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/basic_stats/MEGAHIT-test_minigut_sample2_GC_content_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/basic_stats/Nx_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/basic_stats/cumulative_plot.pdf", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/icarus.html", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/icarus_viewers/contig_size_viewer.html", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/metaquast.log", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/predicted_genes/MEGAHIT-test_minigut_sample2.rna.gff", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/predicted_genes/barrnap.log", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/quast.log", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report.html", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report.pdf", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report.tex", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report.tsv", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report.txt", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/report_rawassemblies.tsv", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/transposed_report.tex", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/transposed_report.tsv", + "Assembly/MEGAHIT/QC/test_minigut_sample2/QUAST/transposed_report.txt" + ], + [ + "MEGAHIT-test_minigut.contigs.fa.gz:md5,3a04593d030eea4bda21d1db4d1f7251", + "MEGAHIT-test_minigut_sample2.contigs.fa.gz:md5,e679c5d2f77f4e4b8a3c74a47625a509", + "MEGAHIT-test_minigut.rna.gff:md5,601e12e5b3d3d1efdaa27abdf7724460", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,bf78597cef3a1321bc22f6b0fd1ee3cb", + "report.tsv:md5,176a93fe70c520253e4f537624571e73", + "report.txt:md5,47bcc1f1b82a712114720b31d6dff4f2", + "report_rawassemblies.tsv:md5,176a93fe70c520253e4f537624571e73", + "transposed_report.tex:md5,945e1d3ee9aaf147fd6491819c5b718e", + "transposed_report.tsv:md5,b8fc3a3fa1f35ddc253ca4fee590b711", + "transposed_report.txt:md5,fd173586fa93f25d988b2773bbe4df55", + "MEGAHIT-test_minigut_sample2.rna.gff:md5,5fad704315c29d8c2b85b928e38a6ccc", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,1ff25f834d4a3da73cb6877d7043b113", + "report.tsv:md5,3a6a5dd51110b50e0fe59c5bf6ec3d19", + "report.txt:md5,d086dc1e69a2538fa6df7f6f28f390c5", + "report_rawassemblies.tsv:md5,3a6a5dd51110b50e0fe59c5bf6ec3d19", + "transposed_report.tex:md5,75737026d6315b72d00098506ee068cc", + "transposed_report.tsv:md5,e0a6dd9aa9c76216d1a479cbe66a15d7", + "transposed_report.txt:md5,dbba99eba513c647e640d1794278f657" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T21:15:52.629282786" + }, + "binning": { + "content": [ + [ + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_0.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_1.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_10.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_11.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_12.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_13.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_14.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_15.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_2.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_3.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_4.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_5.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_6.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_7.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_8.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_9.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa.gz", + "GenomeBinning/CONCOCT/bins/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa.gz", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut.tsv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_PCA_components_data_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_PCA_transformed_data_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_args.txt", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_clustering_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_log.txt", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_original_data_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2.tsv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_PCA_components_data_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_PCA_transformed_data_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_args.txt", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_clustering_gt1000.csv", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_log.txt", + "GenomeBinning/CONCOCT/stats/MEGAHIT-CONCOCT-test_minigut_sample2_original_data_gt1000.csv", + "GenomeBinning/MaxBin2/MEGAHIT-MaxBin2-test_minigut.summary", + "GenomeBinning/MaxBin2/bins/MEGAHIT-MaxBin2-test_minigut.001.fa.gz", + "GenomeBinning/MaxBin2/bins/MEGAHIT-MaxBin2-test_minigut.002.fa.gz", + "GenomeBinning/MaxBin2/discarded/MEGAHIT-MaxBin2-test_minigut.tooshort.gz", + "GenomeBinning/MaxBin2/unbinned/discarded/MEGAHIT-MaxBin2-test_minigut.noclass.pooled.fa.gz", + "GenomeBinning/MaxBin2/unbinned/discarded/MEGAHIT-MaxBin2-test_minigut.noclass.remaining.fa.gz", + "GenomeBinning/MetaBAT2/bins/MEGAHIT-MetaBAT2-test_minigut.1.fa.gz", + "GenomeBinning/MetaBAT2/discarded/MEGAHIT-MetaBAT2-test_minigut.lowDepth.fa.gz", + "GenomeBinning/MetaBAT2/discarded/MEGAHIT-MetaBAT2-test_minigut.tooShort.fa.gz", + "GenomeBinning/MetaBAT2/discarded/MEGAHIT-MetaBAT2-test_minigut_sample2.lowDepth.fa.gz", + "GenomeBinning/MetaBAT2/discarded/MEGAHIT-MetaBAT2-test_minigut_sample2.tooShort.fa.gz", + "GenomeBinning/MetaBAT2/unbinned/discarded/MEGAHIT-MetaBAT2-test_minigut.unbinned.pooled.fa.gz", + "GenomeBinning/MetaBAT2/unbinned/discarded/MEGAHIT-MetaBAT2-test_minigut.unbinned.remaining.fa.gz", + "GenomeBinning/MetaBAT2/unbinned/discarded/MEGAHIT-MetaBAT2-test_minigut_sample2.unbinned.pooled.fa.gz", + "GenomeBinning/MetaBAT2/unbinned/discarded/MEGAHIT-MetaBAT2-test_minigut_sample2.unbinned.remaining.fa.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_qa.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_qa.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_0/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_0/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_0/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_0/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_1/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_1/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_1/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_1/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_2/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_2/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_2/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_2/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_3/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_3/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_3/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_3/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_4/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_4/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_5/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_5/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_5/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_5/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_6/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_6/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_6/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_6/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_7/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_7/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_7/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/bins/MEGAHIT-CONCOCT-test_minigut_sample2_7/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/checkm.log", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/lineage.ms", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/bin_stats.analyze.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/bin_stats.tree.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/bin_stats_ext.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/checkm_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/marker_gene_stats.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/phylo_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/tree/concatenated.fasta", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf/storage/tree/concatenated.tre", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_0/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_0/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_0/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_0/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_1/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_1/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_1/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_1/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_10/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_10/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_10/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_10/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_11/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_11/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_11/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_11/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_12/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_12/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_12/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_12/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_13/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_13/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_13/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_13/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_14/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_14/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_14/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_14/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_15/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_15/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_15/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_15/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_2/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_2/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_2/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_2/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_3/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_3/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_3/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_3/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_4/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_4/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_4/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_4/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_5/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_5/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_5/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_5/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_6/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_6/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_6/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_6/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_7/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_7/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_7/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_7/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_8/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_8/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_8/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_8/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_9/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_9/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_9/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-CONCOCT-test_minigut_9/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/checkm.log", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/lineage.ms", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/bin_stats.analyze.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/bin_stats.tree.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/bin_stats_ext.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/checkm_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/marker_gene_stats.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/phylo_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/tree/PF11987.3.masked.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.fasta", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.pplacer.json", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.tre", + "GenomeBinning/QC/CheckM/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf/storage/tree/pplacer.out", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_qa.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.001/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.001/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.001/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.001/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.002/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.002/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.002/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MaxBin2-test_minigut.002/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/checkm.log", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/lineage.ms", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/bin_stats.analyze.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/bin_stats.tree.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/bin_stats_ext.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/checkm_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/marker_gene_stats.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/phylo_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/tree/PF11987.3.masked.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.fasta", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.pplacer.json", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.tre", + "GenomeBinning/QC/CheckM/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf/storage/tree/pplacer.out", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_qa.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MetaBAT2-test_minigut.1/genes.faa", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MetaBAT2-test_minigut.1/genes.gff", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MetaBAT2-test_minigut.1/hmmer.analyze.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/bins/MEGAHIT-MetaBAT2-test_minigut.1/hmmer.tree.txt", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/checkm.log", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/lineage.ms", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/bin_stats.analyze.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/bin_stats.tree.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/bin_stats_ext.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/checkm_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/marker_gene_stats.tsv", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/phylo_hmm_info.pkl.gz", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.fasta", + "GenomeBinning/QC/CheckM/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf/storage/tree/concatenated.tre", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_0.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_0-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_0.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_1.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_1-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_1.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_10.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_10-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_10.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_11.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_11-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_11.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_12.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_12-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_12.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_13.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_13-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_13.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_14.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_14-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_14.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_15.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_15-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_15.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_2.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_2-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_2.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_3.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_3-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_3.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_4.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_4-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_4.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_5.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_5-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_5.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_6.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_6-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_6.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_7.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_7-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_7.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_8.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_8-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_8.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_9.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_9-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_9.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_0-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_0.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_1-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_1.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_2-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_2.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_3-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_3.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_4-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_4.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_5-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_5.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_6-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_6.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/basic_stats/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/predicted_genes/MEGAHIT-CONCOCT-test_minigut_sample2_7-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-test_minigut_sample2_7.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut-quast_summary.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2-quast_summary.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/basic_stats/MEGAHIT-MaxBin2-test_minigut.001.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/predicted_genes/MEGAHIT-MaxBin2-test_minigut-001-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.001.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/basic_stats/MEGAHIT-MaxBin2-test_minigut.002.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/predicted_genes/MEGAHIT-MaxBin2-test_minigut-002-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-test_minigut.002.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut-quast_summary.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/basic_stats/GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/basic_stats/MEGAHIT-MetaBAT2-test_minigut.1.fa_GC_content_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/basic_stats/Nx_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/basic_stats/cumulative_plot.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/icarus.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/icarus_viewers/contig_size_viewer.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/metaquast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/predicted_genes/MEGAHIT-MetaBAT2-test_minigut-1-fa.rna.gff", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/predicted_genes/barrnap.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/quast.log", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/report.html", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/report.pdf", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/transposed_report.tex", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/transposed_report.tsv", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-test_minigut.1.fa/transposed_report.txt", + "GenomeBinning/QC/QUAST/MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut-quast_summary.tsv", + "GenomeBinning/QC/checkm_summary.tsv", + "GenomeBinning/QC/quast_bin_summary.tsv", + "GenomeBinning/bin_summary.tsv", + "GenomeBinning/depths/bins/bin_depths_summary.tsv", + "GenomeBinning/depths/contigs/MEGAHIT-test_minigut-depth.txt.gz", + "GenomeBinning/depths/contigs/MEGAHIT-test_minigut_sample2-depth.txt.gz" + ], + [ + "MEGAHIT-CONCOCT-test_minigut_0.fa.gz:md5,5e4c7a787a714fe1b51ea1103af708ba", + "MEGAHIT-CONCOCT-test_minigut_1.fa.gz:md5,0c3c00dd3ac40fef316c0366f2e7460a", + "MEGAHIT-CONCOCT-test_minigut_10.fa.gz:md5,21abe0770df4b0c98b69146f738612ff", + "MEGAHIT-CONCOCT-test_minigut_11.fa.gz:md5,7a8f0f3ea2a11e2f8ac4a57f8638363c", + "MEGAHIT-CONCOCT-test_minigut_12.fa.gz:md5,b62b064023d197c67889ec4d267d6dee", + "MEGAHIT-CONCOCT-test_minigut_13.fa.gz:md5,0a2768f1ca4d206310615f514d1a1444", + "MEGAHIT-CONCOCT-test_minigut_14.fa.gz:md5,04a354971902cdf1aa8fb7ab288dc905", + "MEGAHIT-CONCOCT-test_minigut_15.fa.gz:md5,a6c64a6b42d3f9ba610b92ac268fb762", + "MEGAHIT-CONCOCT-test_minigut_2.fa.gz:md5,984fa111b2ed46483bd4855780657cc1", + "MEGAHIT-CONCOCT-test_minigut_3.fa.gz:md5,041ede51e5351b1b469bf0ea2cee667a", + "MEGAHIT-CONCOCT-test_minigut_4.fa.gz:md5,99b2627f78ca4922f437d359c92df657", + "MEGAHIT-CONCOCT-test_minigut_5.fa.gz:md5,bf0e1698b3457c529a0417a68c752a5f", + "MEGAHIT-CONCOCT-test_minigut_6.fa.gz:md5,9136185ca082798dd29dff6e36e66993", + "MEGAHIT-CONCOCT-test_minigut_7.fa.gz:md5,e4ab4072d345791c76d9436b16d0d6b8", + "MEGAHIT-CONCOCT-test_minigut_8.fa.gz:md5,7becb03536d9d6a46a0fa9490db4c8e0", + "MEGAHIT-CONCOCT-test_minigut_9.fa.gz:md5,59591e3ced49e87976c99a028f2d04cc", + "MEGAHIT-CONCOCT-test_minigut_sample2_0.fa.gz:md5,2f348e1920475e3387d1700141cd5814", + "MEGAHIT-CONCOCT-test_minigut_sample2_1.fa.gz:md5,09381cb4a8e37f3b1dfb4db7249a51df", + "MEGAHIT-CONCOCT-test_minigut_sample2_2.fa.gz:md5,15f16eb7485351c0e3df24ec125c5d5d", + "MEGAHIT-CONCOCT-test_minigut_sample2_3.fa.gz:md5,ee7ef2e6a9da942fb7dbc4203ec94866", + "MEGAHIT-CONCOCT-test_minigut_sample2_4.fa.gz:md5,6e3e00efffadac924b8368831c6292aa", + "MEGAHIT-CONCOCT-test_minigut_sample2_5.fa.gz:md5,0301c4869da61873ccf7567ed16030c6", + "MEGAHIT-CONCOCT-test_minigut_sample2_6.fa.gz:md5,1fdc6c4227ccb6b0d1bc5a03410c41b1", + "MEGAHIT-CONCOCT-test_minigut_sample2_7.fa.gz:md5,eafebaa3a00a7cb17e3b6b205105b326", + "MEGAHIT-CONCOCT-test_minigut.csv:md5,8560d22664726d5b6198c7d65d42d50e", + "MEGAHIT-CONCOCT-test_minigut_args.txt:md5,f447f7834b8e5bab73502e6ecf482a66", + "MEGAHIT-CONCOCT-test_minigut_clustering_gt1000.csv:md5,88148fc7969f1685e56c8d9638b02004", + "MEGAHIT-CONCOCT-test_minigut_sample2.csv:md5,aa10e9b5712188653ac9f65de7290414", + "MEGAHIT-CONCOCT-test_minigut_sample2_args.txt:md5,663042906344d19ad919e8081ada9cfb", + "MEGAHIT-CONCOCT-test_minigut_sample2_clustering_gt1000.csv:md5,5ef34d40f93428cc2198faa96ec0d8ae", + "MEGAHIT-MaxBin2-test_minigut.summary:md5,572e7676beb5ece5e1522d80900d48d7", + "MEGAHIT-MaxBin2-test_minigut.001.fa.gz:md5,34048bc1375d1bf9a158601ad1456e44", + "MEGAHIT-MaxBin2-test_minigut.002.fa.gz:md5,ad4d02893b1e3fd73f3090715662d560", + "MEGAHIT-MaxBin2-test_minigut.tooshort.gz:md5,6bd11c4a116c8e771f0e909431394876", + "MEGAHIT-MaxBin2-test_minigut.noclass.pooled.fa.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-MaxBin2-test_minigut.noclass.remaining.fa.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-MetaBAT2-test_minigut.1.fa.gz:md5,3e647b1f5d9d4155ae5e34527bbcf260", + "MEGAHIT-MetaBAT2-test_minigut.lowDepth.fa.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-MetaBAT2-test_minigut.tooShort.fa.gz:md5,8ce2baf3b4f81a6f3331ce1b0c0d643f", + "MEGAHIT-MetaBAT2-test_minigut_sample2.lowDepth.fa.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-MetaBAT2-test_minigut_sample2.tooShort.fa.gz:md5,38f8f37512946f14eee564fe77754577", + "MEGAHIT-MetaBAT2-test_minigut.unbinned.remaining.fa.gz:md5,cfa7bab2966552185edb5f3174558765", + "MEGAHIT-MetaBAT2-test_minigut_sample2.unbinned.remaining.fa.gz:md5,aa4dac8443c4395c5bc1f4db0263dd07", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_qa.txt:md5,7e659ca54d75c9242e6920727e4aaf26", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_qa.txt:md5,04f52a788be4b721946d8c2a1879cdf6", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2_wf.tsv:md5,fcb0236f7e33c520a130877415124373", + "genes.faa:md5,5807887921d7752f2171648f34f33dbc", + "genes.gff:md5,e6eb56f5a660910e02df0a060287c656", + "genes.faa:md5,34adea48af3209c97c09d02026d7893e", + "genes.gff:md5,bc9017a2b3afecafd5dfd97c736d883c", + "genes.faa:md5,54ff0e9cbc22b9103527aa16de5b262b", + "genes.gff:md5,c7999702b5b4aa7baed917e95f349d0d", + "genes.faa:md5,c9e5ba9a1caa1525dfddef4841ed872a", + "genes.gff:md5,12648e1cbbe2a94aaab85e31d4ed6753", + "genes.faa:md5,d41d8cd98f00b204e9800998ecf8427e", + "genes.gff:md5,4b925aed1107d98cb9e88341b3e229b6", + "genes.faa:md5,3eff42705008807c0b40b27049928fbe", + "genes.gff:md5,47d5c19cd107edf6e9c5bec83b4e45e4", + "genes.faa:md5,e6f276fc551f4b307b9879fd26c533e7", + "genes.gff:md5,92fe4ab78602595c7d62ff4d33d04052", + "genes.faa:md5,d328ee62e4ab0b556e3154dfc82e9ba3", + "genes.gff:md5,c93fd113cf626c13de3c7fba11d52860", + "concatenated.fasta:md5,d41d8cd98f00b204e9800998ecf8427e", + "concatenated.tre:md5,08efbb5a0b56a76d5241936fa588ee44", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_wf.tsv:md5,9d3de2ad41db7b53d70d9a15326c5c6b", + "genes.faa:md5,dd3b8c3fce7df587c1bee330e238a9ae", + "genes.gff:md5,ef3899819743563feb1f01664e5bbd0e", + "genes.faa:md5,2b3813ba9b91264cb077a35a7ec95d03", + "genes.gff:md5,9dd3072376b14954006f59a8e96a3e28", + "genes.faa:md5,4320b54e023ba58ed01169f7a79aef3c", + "genes.gff:md5,4e2ab371857b133ff67286a2973aa829", + "genes.faa:md5,4ed6b817f38edd427d926ab9f1fb85bc", + "genes.gff:md5,c6b30e3953f0f7703a588a7db58b08fa", + "genes.faa:md5,87dd6d817a43132968747f0706769715", + "genes.gff:md5,3e42e742fa74af910a65670990e5e44c", + "genes.faa:md5,e337483e8efb7dcb55a39990da17d8ac", + "genes.gff:md5,e94b7217366c029c43957baee931dfc3", + "genes.faa:md5,c9996bca80e81841373c80cfbf05cebd", + "genes.gff:md5,369bfaaf8ff204305d928a9c35f61bdc", + "genes.faa:md5,cdee971a4ed68c984f2bc217bb7ca934", + "genes.gff:md5,74c9387394d8d2ba1dd47a3101c2b5ae", + "genes.faa:md5,fea9e115dbf13c3c9f97791f517e3abe", + "genes.gff:md5,776ec7c8c3d2ed3214d0fe7cc79b89a1", + "genes.faa:md5,2a90616c55d38dd380ea3d709f69fe80", + "genes.gff:md5,0a5206b1414e07300a890633455618cd", + "genes.faa:md5,29d18faa5e5418aee86eb760aa555e35", + "genes.gff:md5,253e776698f2789b952ee5f08e9af940", + "genes.faa:md5,0f5a4a06f015ab40e2eb80858c7625df", + "genes.gff:md5,d642b59d4894b221c86bea929a509a56", + "genes.faa:md5,f2bf60437060ef02d34b95648c378523", + "genes.gff:md5,658f00f2a912b98a4d2e13af5c934646", + "genes.faa:md5,9559c0f56cab25b2613400796f046d50", + "genes.gff:md5,3f497a975a4d528deb0cec160044c4ef", + "genes.faa:md5,2c732a5ef750e9dda83abe1aee661bb0", + "genes.gff:md5,b3a35d87246a9f745bb776f104f82ba2", + "genes.faa:md5,2f0e06399324509924e8061fb02ec397", + "genes.gff:md5,e32081d326e6a440f6d8eb1e5c4bb2e7", + "PF11987.3.masked.faa:md5,4dddf2d3ac51209f8797f2063b06c388", + "concatenated.fasta:md5,1b77332f066e985aee5c65abf2475841", + "concatenated.pplacer.json:md5,e3d37de1b8e05da5655fd544250b9021", + "concatenated.tre:md5,94ec7e122759243633fa2c60733fea20", + "pplacer.out:md5,5ebb749c88fc59464f84658cdaa09afd", + "MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_qa.txt:md5,ce8d6ec038cf6dda5d40eb4da854cee7", + "MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut_wf.tsv:md5,f90200717fd35d744187bd19c943e3b2", + "genes.faa:md5,b784e2e3dd8998b3ab8d1fc7e33a0a25", + "genes.gff:md5,2f7253c45b8071bf1478fed0250436f3", + "genes.faa:md5,0ad934b1d913c8d50eac9cbd8ce5aab5", + "genes.gff:md5,57ab4b2d99fe09a52908cbb6f5cf3832", + "PF11987.3.masked.faa:md5,6d0358fd0f3b98dcd40587ca0854107c", + "concatenated.fasta:md5,91780ae7701bcdd54adb0289b15ed8d2", + "concatenated.pplacer.json:md5,76c6055c163aa74e92631f171b5fee32", + "concatenated.tre:md5,e96d85201ac943a178f0823b17f2706c", + "pplacer.out:md5,db095f354c2bd4daa997866ae7fdf538", + "MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_qa.txt:md5,f34a4f8dea80a9015f99110d4929e66f", + "MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut_wf.tsv:md5,ebaf170db38fcc90a88e96b2969243b6", + "genes.faa:md5,d23c92c0ec2471874eb2fcf07962f70b", + "genes.gff:md5,6a1f283cb9bc1e761e2bfd6ce4d05441", + "concatenated.fasta:md5,d41d8cd98f00b204e9800998ecf8427e", + "concatenated.tre:md5,08efbb5a0b56a76d5241936fa588ee44", + "MEGAHIT-CONCOCT-test_minigut_0-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,97abb2439404f272282cb46e3d88db55", + "report.tsv:md5,e8c1c1a90f8043528a5869bfb0d6f16f", + "report.txt:md5,2d7d7f9f141768c116d648a1f749dbf6", + "transposed_report.tex:md5,47985b284506b950ccf90dfa62b677ea", + "transposed_report.tsv:md5,d051e09355ae169464fe1a77fc63d971", + "transposed_report.txt:md5,a4ace9e043c8cde376f5e07691a93635", + "MEGAHIT-CONCOCT-test_minigut_1-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,24db6ee9fbb4d57dfe00ff7cfebf9350", + "report.tsv:md5,f20660b2e828058ab5f6cb57b7a6e877", + "report.txt:md5,3959868b958a9b1a43c1efd081260f68", + "transposed_report.tex:md5,f9335287c2a6c80741597446065ebfcf", + "transposed_report.tsv:md5,68fc6b8431aedb0e2dba6a177aa629a2", + "transposed_report.txt:md5,ceb0a5fc756a82b8babf6b6c0ae57b1e", + "MEGAHIT-CONCOCT-test_minigut_10-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,12c8bc9afbdd1e4ac7305fcf67d86325", + "report.tsv:md5,dd30e5b7921e9fe705ef0dd82b15714b", + "report.txt:md5,48ac488278e8e70226495f02d5be797f", + "transposed_report.tex:md5,dabebdf71d8f0b019e1548f599be34be", + "transposed_report.tsv:md5,d5472f86391925cd4f4c3d92f857b741", + "transposed_report.txt:md5,d04fc96974a7521bcb94a0b23d907a93", + "MEGAHIT-CONCOCT-test_minigut_11-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,cdeaea86fd151c4e0e101ef678b0135a", + "report.tsv:md5,5d31fe3feace7605e42578a813b653e4", + "report.txt:md5,d23c00338cd8233d9b8b46ef8163742b", + "transposed_report.tex:md5,a13d6be658818086c8f1c570dc94df3f", + "transposed_report.tsv:md5,6611f680bd40a2417a90403b86395c75", + "transposed_report.txt:md5,e5d8a51abfed26ee3b0f93054e41cb8f", + "MEGAHIT-CONCOCT-test_minigut_12-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,b3bf666b6ed3418617e22876aa4ab8cd", + "report.tsv:md5,f4af5709f84598b917b047c0ee38d1cb", + "report.txt:md5,e04af045f3d90600bc86aff0a123b440", + "transposed_report.tex:md5,9cd57f3fd52f9aea81f433e149930987", + "transposed_report.tsv:md5,c41021d8c2d49314920950cacce5623e", + "transposed_report.txt:md5,dc5913a84af14230f76e2429aa5dad25", + "MEGAHIT-CONCOCT-test_minigut_13-fa.rna.gff:md5,29be3d64f4c052ca018fef0f66de7d75", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,fb335c68e645a613b2fe4f784342bfee", + "report.tsv:md5,ab2c3cdfc2072357ea70628a43c38cf5", + "report.txt:md5,ea006f5a67f5876172943d04d9e75cd1", + "transposed_report.tex:md5,aedb4ca3e98ee60326a982136ddeca3e", + "transposed_report.tsv:md5,985ba57b0e62d7d2247baf72125bd8b9", + "transposed_report.txt:md5,65ef1fe9da336457ac983f41ce3d799e", + "MEGAHIT-CONCOCT-test_minigut_14-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,11e12960e740702add2bdeadff828c3d", + "report.tsv:md5,17b5b7c4cc621038d51be40a4e1a6c6e", + "report.txt:md5,46bae124df49409f8adab2843b2380fd", + "transposed_report.tex:md5,f3d9849d420a38b63afeefdf23719003", + "transposed_report.tsv:md5,58f18ff784073276e7f7bd47d5213288", + "transposed_report.txt:md5,832fb591508c4f8427f98238b174d6c9", + "MEGAHIT-CONCOCT-test_minigut_15-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,0989c7d02f751456fc04809d502d74a1", + "report.tsv:md5,cc1ff5b19b6e45a2b66775560a18b290", + "report.txt:md5,86d1d0ad50151db41ee86418a35913b7", + "transposed_report.tex:md5,c27c3a79b4f2173ad29817dc6fe89b4c", + "transposed_report.tsv:md5,d71c612a966a3041f766ccf6cc9ff8ac", + "transposed_report.txt:md5,a96c5da89cb4f696e0309f0195a0491e", + "MEGAHIT-CONCOCT-test_minigut_2-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,d6ff30ee03f91e9da216b047c4de5c3b", + "report.tsv:md5,62a9a789b9fa7da91a55bf6a8c49a40a", + "report.txt:md5,63373a6541c35e8995aa70cf5d1b0ae4", + "transposed_report.tex:md5,4edd8e98149b59c2c176bd228f09b4f0", + "transposed_report.tsv:md5,9fe7cc100666d550c5dd33c24f9999dd", + "transposed_report.txt:md5,6620c1d9ff7af66fe5fb593bd55a0de3", + "MEGAHIT-CONCOCT-test_minigut_3-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,a3a6b7a06c7741c768040c570bfd31a0", + "report.tsv:md5,18a0af53e83cc97cdcf066b3eea14737", + "report.txt:md5,e0c10be61b50a2eff0dbe429437b5202", + "transposed_report.tex:md5,89aa256a80e33606e48364666e0dc851", + "transposed_report.tsv:md5,31d0ca080d4f2bd1f855b357dfa0f1fc", + "transposed_report.txt:md5,6bbea38b33c29a16b967e3e224bb599c", + "MEGAHIT-CONCOCT-test_minigut_4-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,ddbe2f5eb8cbe95a3d7f875d9b8e09fd", + "report.tsv:md5,7e7b9ce50eff66d16870958d430958ec", + "report.txt:md5,0dffb22ec53e6560ab142568f3443a6f", + "transposed_report.tex:md5,3790eba26e87efe145e7649935c2eac5", + "transposed_report.tsv:md5,9d32dc3be02394147bcb0a2b4a4b7afb", + "transposed_report.txt:md5,5dc28ce7611df1735b1d7add4e74db10", + "MEGAHIT-CONCOCT-test_minigut_5-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,b720c70bfeeba95c679232746be258a2", + "report.tsv:md5,9d75ead9697092b96dd54f18b4754f7b", + "report.txt:md5,52e9655b37ea99cf7eae42390ebd06fe", + "transposed_report.tex:md5,2c1763a880064ac2c521ce78cfdeb868", + "transposed_report.tsv:md5,d343a23c73e356c9bd96058ce6822674", + "transposed_report.txt:md5,fc96c408ba2018e28fada6226ae39fac", + "MEGAHIT-CONCOCT-test_minigut_6-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,4dac8ffba02d0c67778a2cab592451a3", + "report.tsv:md5,bfb1343c074c2f7a73b1ecc68cc77ab5", + "report.txt:md5,3dcc61b71776d321806de911a752d235", + "transposed_report.tex:md5,17a954a8c336e7f3f641491de6ee9c1c", + "transposed_report.tsv:md5,3e83a497e81d6b72f211eb43236d266d", + "transposed_report.txt:md5,2834f96cba1c4c36d8e5125c240d4aeb", + "MEGAHIT-CONCOCT-test_minigut_7-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,755cfd83a71068730bff6cc0daae2fba", + "report.tsv:md5,688aa6bcdd76c9c109ee6b6340e8ecc2", + "report.txt:md5,12d571f0c85307a7a98eb5b2649a9552", + "transposed_report.tex:md5,2ff7f24c2189003f0c530cc974ec108c", + "transposed_report.tsv:md5,73734e3bb55aa23a0408ebbf251884bc", + "transposed_report.txt:md5,d3302643ffb538d378b4f6ee6daafa65", + "MEGAHIT-CONCOCT-test_minigut_8-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,e5f03fd06e161bc3db71131a6f35e570", + "report.tsv:md5,94657afdbed2e376c7e3574b8e44a8e4", + "report.txt:md5,f3fa07af6072ff939bb4154a84993d55", + "transposed_report.tex:md5,053cd309f3aaa7f596e71044572d25e4", + "transposed_report.tsv:md5,b7945a322cf8927306d597524146eb8b", + "transposed_report.txt:md5,76353052536dfadf144eb708f1145617", + "MEGAHIT-CONCOCT-test_minigut_9-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,1cc45ea93397a3ccd22535a8d12584d0", + "report.tsv:md5,775f73ab512dbfff3193ae895047f823", + "report.txt:md5,1b3ddda8dee4373021c6c98f238bb54b", + "transposed_report.tex:md5,568ce921e518bd4fd3a399bd826fabe4", + "transposed_report.tsv:md5,cccd2da3e643f91821a69e4b444a30cb", + "transposed_report.txt:md5,454f52a2be12e0b5cc97ed7ff62119eb", + "MEGAHIT-CONCOCT-test_minigut_sample2_0-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,c34bb2db684dc26aa68a9384e6d122d3", + "report.tsv:md5,afbb47268540ec4cc0799ee2a381289a", + "report.txt:md5,944711f148aab8f3f3e936987ff830db", + "transposed_report.tex:md5,89be2247b608ffd047a4496037fb4067", + "transposed_report.tsv:md5,b7a99d5618bcd4855d4f7c584989bb94", + "transposed_report.txt:md5,6a45fdbb20d48104bcc02494c5d62f77", + "MEGAHIT-CONCOCT-test_minigut_sample2_1-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,011dc09201b744dbb8a1aafa9d57a2e1", + "report.tsv:md5,5ab617c30af418ba5fdf1a706a0239d0", + "report.txt:md5,48dae656f3e0957563f9a377f7ab6004", + "transposed_report.tex:md5,0a299e5660c6cdeb81731eafa5721d9f", + "transposed_report.tsv:md5,4dd6da76d13974c180ba0af7c3a6041e", + "transposed_report.txt:md5,6d79d1babd1e78aafbd04ff763085943", + "MEGAHIT-CONCOCT-test_minigut_sample2_2-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,9249fe98ec7fb87d09ba6d23fcf316d8", + "report.tsv:md5,c8b2df57cfcde51edd461a4109cbaa0e", + "report.txt:md5,30194289e6f11ca685844e4d924ab0d7", + "transposed_report.tex:md5,91c1f52958d95518ed1c3f53a361c687", + "transposed_report.tsv:md5,f2303139731f4f6e3587ff9a42a55304", + "transposed_report.txt:md5,66bfda145c5e9ed5a932f019619c83bd", + "MEGAHIT-CONCOCT-test_minigut_sample2_3-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,4aad4bd574856e049135927900251243", + "report.tsv:md5,5259dc38c7fee3d6bdb2b6d4d03a07d6", + "report.txt:md5,4e129c9e86d0d60c51d9d215eb80fb13", + "transposed_report.tex:md5,baba6d2c0b402e5d25c9b682899532a0", + "transposed_report.tsv:md5,b617fa1fbc508945dc3b930b9e8f58db", + "transposed_report.txt:md5,96668daed08e8c726b427c8157d03412", + "MEGAHIT-CONCOCT-test_minigut_sample2_4-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,7441b2979513cfd3ca066618ed31d10e", + "report.tsv:md5,ac8db1a2957f72d4a6144edc7e39a996", + "report.txt:md5,d3a36bc6fd5622e01ab55ba54ae2c843", + "transposed_report.tex:md5,ab9745448365d6a7063e7e767d838bcd", + "transposed_report.tsv:md5,e453b90ce6d872afc578085e6d13203a", + "transposed_report.txt:md5,6ed088f1851cb9d854f6e74dab8c109c", + "MEGAHIT-CONCOCT-test_minigut_sample2_5-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,b35c7bb6ce0c902a6ec2974dcf864ea3", + "report.tsv:md5,ae8e301bdf7b0fdbfd16bdaf723672da", + "report.txt:md5,dc5239603eb8613a7859b0c92b9f3117", + "transposed_report.tex:md5,a580029d91e23ee49b6dce6e24933e4e", + "transposed_report.tsv:md5,3c8b6213e684569c7a0893058df7d288", + "transposed_report.txt:md5,27b3865eb2ce281e0749c28969cd6a8a", + "MEGAHIT-CONCOCT-test_minigut_sample2_6-fa.rna.gff:md5,fab80d500c17e8f22985c32da09a4a3c", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,1d863a58a254a7ed0b08f5ada24695b6", + "report.tsv:md5,0bf40a14a0333b8c208a86c93d365666", + "report.txt:md5,ffaefaa5e28a09a7a3b3f6d658469b13", + "transposed_report.tex:md5,902a00a0cfcc43cdf73da15318849486", + "transposed_report.tsv:md5,7463ac4e17e118f8679a385dd5bc63ff", + "transposed_report.txt:md5,308a631afc4944851bef5cbbb3917107", + "MEGAHIT-CONCOCT-test_minigut_sample2_7-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,caf863c1d02a1f67c21836235fcfe879", + "report.tsv:md5,f1bd3f9cea56103316e0414cf4f453e1", + "report.txt:md5,c212a64971e6bfdfbb0509248f11d681", + "transposed_report.tex:md5,ae7f04f451b396ad1f3e4107166460a8", + "transposed_report.tsv:md5,946a37b48fd624d8885e36a98cd183a3", + "transposed_report.txt:md5,d6c2eadad57ee2c5d1150bf188a1de79", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut-quast_summary.tsv:md5,b14022ffe5702b056f5d19f7623d0d73", + "MEGAHIT-CONCOCT-unclassified-unrefined-test_minigut_sample2-quast_summary.tsv:md5,fcc83c21b5a8f20cb27f7287d300048f", + "MEGAHIT-MaxBin2-test_minigut-001-fa.rna.gff:md5,7fcf7308d4e3ac851296fbb90fdf1a68", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,7ad453d44d2ed9378ed4a8e9f9cd55a4", + "report.tsv:md5,79f30fd0ce3bc4d011991051f82c41ce", + "report.txt:md5,7500cd439424a473adb06969525ab0dc", + "transposed_report.tex:md5,bb68d97aa21f56e52238af2ee3b3251f", + "transposed_report.tsv:md5,f20a8a46f7a4f7f411a09b7c164af346", + "transposed_report.txt:md5,891e4d0a804bf316ea8986855ab3a7b2", + "MEGAHIT-MaxBin2-test_minigut-002-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,42c14a2f81cd7f8cee7d069c2c48f10f", + "report.tsv:md5,c40354c86d152b67b10cfdf822f7c04c", + "report.txt:md5,7d8e9cd4bfa291071843086e484bc114", + "transposed_report.tex:md5,025cd05918bd841f2e44de9a6ff249a6", + "transposed_report.tsv:md5,c8c8d83cad398d2697013bad7828f9e6", + "transposed_report.txt:md5,9ef418d7c56d43337638c70ba7dab186", + "MEGAHIT-MaxBin2-unclassified-unrefined-test_minigut-quast_summary.tsv:md5,afb2ed70af3b1e7ea33ecae3861dfbe8", + "MEGAHIT-MetaBAT2-test_minigut-1-fa.rna.gff:md5,df19e1b84ba6f691d20c72b397c88abf", + "barrnap.log:md5,d41d8cd98f00b204e9800998ecf8427e", + "report.tex:md5,b865741ae1a6886fe2f9c5e170d5b3db", + "report.tsv:md5,8d10463d5ed5f71f8e8958a993461ff7", + "report.txt:md5,b24d61b58d0099aced21dc1ab743243a", + "transposed_report.tex:md5,17352d0e3a1c0d0551ff1b638da2ace7", + "transposed_report.tsv:md5,2431a08c5a8f77d147fc99811b7dda94", + "transposed_report.txt:md5,bb0bf1821380ebe75eadb77016a99565", + "MEGAHIT-MetaBAT2-unclassified-unrefined-test_minigut-quast_summary.tsv:md5,2431a08c5a8f77d147fc99811b7dda94", + "checkm_summary.tsv:md5,0ba48ca4d6557e95a8acb5cfc50d8d16", + "quast_bin_summary.tsv:md5,5c9a2beb6c9a1f319c1d93908b37b1da", + "bin_summary.tsv:md5,5e557c3b6b00b006c477d547baba01d3", + "bin_depths_summary.tsv:md5,bd54b32dc4c741cd4edd2bbba51f6552" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T21:15:52.782652223" + }, + "viral": { + "content": [ + [ + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_aggregated_classification/MEGAHIT-test_minigut.contigs_aggregated_classification.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_annotate/MEGAHIT-test_minigut.contigs_taxonomy.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_find_proviruses/MEGAHIT-test_minigut.contigs_provirus.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_marker_classification/MEGAHIT-test_minigut.contigs_marker_classification.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_plasmid.fna.gz", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_plasmid_genes.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_plasmid_proteins.faa.gz", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_plasmid_summary.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_virus.fna.gz", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_virus_genes.tsv", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_virus_proteins.faa.gz", + "VirusIdentification/geNomad/test_minigut/MEGAHIT-test_minigut.contigs_summary/MEGAHIT-test_minigut.contigs_virus_summary.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_aggregated_classification/MEGAHIT-test_minigut_sample2.contigs_aggregated_classification.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_annotate/MEGAHIT-test_minigut_sample2.contigs_taxonomy.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_find_proviruses/MEGAHIT-test_minigut_sample2.contigs_provirus.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_marker_classification/MEGAHIT-test_minigut_sample2.contigs_marker_classification.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_plasmid.fna.gz", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_plasmid_genes.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_plasmid_proteins.faa.gz", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_plasmid_summary.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_virus.fna.gz", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_virus_genes.tsv", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_virus_proteins.faa.gz", + "VirusIdentification/geNomad/test_minigut_sample2/MEGAHIT-test_minigut_sample2.contigs_summary/MEGAHIT-test_minigut_sample2.contigs_virus_summary.tsv" + ], + [ + "MEGAHIT-test_minigut.contigs_taxonomy.tsv:md5,3b1fc1e7fb2457859b1c5ca82ef5ddac", + "MEGAHIT-test_minigut.contigs_provirus.tsv:md5,93a6bca59b0bf7f57c0b9b60d2e57082", + "MEGAHIT-test_minigut.contigs_marker_classification.tsv:md5,49625280a666cd6cb61d6a2166a0627d", + "MEGAHIT-test_minigut.contigs_plasmid.fna.gz:md5,3a80a30dee715b6b6b8db5c54573074c", + "MEGAHIT-test_minigut.contigs_plasmid_genes.tsv:md5,14d5fcbb1745eedb3d416256e747ed0e", + "MEGAHIT-test_minigut.contigs_plasmid_proteins.faa.gz:md5,8c289a7f53e1785e071cef39915582f2", + "MEGAHIT-test_minigut.contigs_plasmid_summary.tsv:md5,dfe1b71b447172f96186113ff3ec71e4", + "MEGAHIT-test_minigut.contigs_virus.fna.gz:md5,c8d42683f5e62c3e44eb5d2d8fb7b84f", + "MEGAHIT-test_minigut.contigs_virus_genes.tsv:md5,51c2dc60b3a1834c0811552af3f205b2", + "MEGAHIT-test_minigut.contigs_virus_proteins.faa.gz:md5,2e14bd6ae9e2043a3b6f407c425e13e1", + "MEGAHIT-test_minigut.contigs_virus_summary.tsv:md5,d22f74f27a69c252c173c987c0339c5d", + "MEGAHIT-test_minigut_sample2.contigs_taxonomy.tsv:md5,5c9174470b250dfbe1e0d7d2da143617", + "MEGAHIT-test_minigut_sample2.contigs_provirus.tsv:md5,93a6bca59b0bf7f57c0b9b60d2e57082", + "MEGAHIT-test_minigut_sample2.contigs_marker_classification.tsv:md5,0fb58b89eea2ac71ca4cc2d960e1f42c", + "MEGAHIT-test_minigut_sample2.contigs_plasmid.fna.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-test_minigut_sample2.contigs_plasmid_genes.tsv:md5,55818cae5a57381b77778076e99605e6", + "MEGAHIT-test_minigut_sample2.contigs_plasmid_proteins.faa.gz:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-test_minigut_sample2.contigs_plasmid_summary.tsv:md5,8c4ddaa8a90da779c11537be0fddb799", + "MEGAHIT-test_minigut_sample2.contigs_virus.fna.gz:md5,fd99ba7b3d7b4e247444abe3173d0a61", + "MEGAHIT-test_minigut_sample2.contigs_virus_genes.tsv:md5,69d9fb20e1b3595da1d136edc42c2776", + "MEGAHIT-test_minigut_sample2.contigs_virus_proteins.faa.gz:md5,79089b17750dec52668b2f0fdf7d638b", + "MEGAHIT-test_minigut_sample2.contigs_virus_summary.tsv:md5,2d9c0006336752f4a41253e6570119a1" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T23:17:18.54920095" + }, + "taxonomy": { + "content": [ + [ + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.ORF2LCA.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.bin2classification.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.concatenated.alignment.diamond", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.concatenated.predicted_proteins.faa", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.concatenated.predicted_proteins.gff", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins.log", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins_bin2classification.names.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut/bins/MEGAHIT-CONCOCT-test_minigut-bins_summary.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.ORF2LCA.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.bin2classification.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.alignment.diamond", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.predicted_proteins.faa", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.predicted_proteins.gff", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins.log", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins_bin2classification.names.txt", + "Taxonomy/CAT/MEGAHIT/CONCOCT/test_minigut_sample2/bins/MEGAHIT-CONCOCT-test_minigut_sample2-bins_summary.txt", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.ORF2LCA.txt", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.bin2classification.txt", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.concatenated.alignment.diamond", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.concatenated.predicted_proteins.faa", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.concatenated.predicted_proteins.gff", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins.log", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins_bin2classification.names.txt", + "Taxonomy/CAT/MEGAHIT/MaxBin2/test_minigut/bins/MEGAHIT-MaxBin2-test_minigut-bins_summary.txt", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.ORF2LCA.txt", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.bin2classification.txt", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.alignment.diamond", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.predicted_proteins.faa", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.predicted_proteins.gff", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins.log", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins_bin2classification.names.txt", + "Taxonomy/CAT/MEGAHIT/MetaBAT2/test_minigut/bins/MEGAHIT-MetaBAT2-test_minigut-bins_summary.txt", + "Taxonomy/CAT/bat_summary.tsv", + "Taxonomy/GTDB-Tk/gtdbtk_summary.tsv" + ], + [ + "MEGAHIT-CONCOCT-test_minigut-bins.ORF2LCA.txt:md5,f98beecca6672780a8d1e41dd346e739", + "MEGAHIT-CONCOCT-test_minigut-bins.bin2classification.txt:md5,7000412ba55c96e5a271583126ce9d72", + "MEGAHIT-CONCOCT-test_minigut-bins.concatenated.alignment.diamond:md5,a9478f97236792a591f88ca9389f3458", + "MEGAHIT-CONCOCT-test_minigut-bins.concatenated.predicted_proteins.faa:md5,3c7b68f8055512930188caa0785acea7", + "MEGAHIT-CONCOCT-test_minigut-bins.concatenated.predicted_proteins.gff:md5,45cc3c27a496092b7540917cbd6656e3", + "MEGAHIT-CONCOCT-test_minigut-bins_bin2classification.names.txt:md5,c263ccdf44ee8f72894af13adbdf6b12", + "MEGAHIT-CONCOCT-test_minigut-bins_summary.txt:md5,9b888cb8d0838eadb18d9075bd38868e", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins.ORF2LCA.txt:md5,ebbc5cf8fa7ebc225f005211d89f6087", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins.bin2classification.txt:md5,e32156f65d0c22f643ec78ded72fd5ca", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.alignment.diamond:md5,d41d8cd98f00b204e9800998ecf8427e", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.predicted_proteins.faa:md5,5e5bce880525cd5e04fd0efef8f1752a", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins.concatenated.predicted_proteins.gff:md5,33499f2a954e9f28cfb23439530517ae", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins_bin2classification.names.txt:md5,43d5ecd14bfafbcf53fc9bfb57d16133", + "MEGAHIT-CONCOCT-test_minigut_sample2-bins_summary.txt:md5,56f145de741dd3c7fad7db4df9289837", + "MEGAHIT-MaxBin2-test_minigut-bins.ORF2LCA.txt:md5,33457fbe8daf15b1140269377f062d38", + "MEGAHIT-MaxBin2-test_minigut-bins.bin2classification.txt:md5,f59f81433f61bf170c77c6f279cc92c8", + "MEGAHIT-MaxBin2-test_minigut-bins.concatenated.alignment.diamond:md5,436cdc2e50372ad244074fbff66b9810", + "MEGAHIT-MaxBin2-test_minigut-bins.concatenated.predicted_proteins.faa:md5,62861319b9801981138a779c575389b0", + "MEGAHIT-MaxBin2-test_minigut-bins.concatenated.predicted_proteins.gff:md5,bed3d0fe1d0b0c235155cf43355a3bdb", + "MEGAHIT-MaxBin2-test_minigut-bins_bin2classification.names.txt:md5,425250932b387591ba3988ab9dcb14d3", + "MEGAHIT-MaxBin2-test_minigut-bins_summary.txt:md5,1666dbfcbf757029cc0e5b0bba712e00", + "MEGAHIT-MetaBAT2-test_minigut-bins.ORF2LCA.txt:md5,d190aa0bd0eeb736316c2c53a7ad057b", + "MEGAHIT-MetaBAT2-test_minigut-bins.bin2classification.txt:md5,42e06c83fc6f5dc30d7e1873549f619b", + "MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.alignment.diamond:md5,c483f334e43fe6239dbd7b9d17438558", + "MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.predicted_proteins.faa:md5,f561b734898447039c2d4c9051a891bd", + "MEGAHIT-MetaBAT2-test_minigut-bins.concatenated.predicted_proteins.gff:md5,458de47bf5b0e9937dc2cf4283917f3a", + "MEGAHIT-MetaBAT2-test_minigut-bins_bin2classification.names.txt:md5,ce1b6bae00995e88d70722462d9fcedb", + "MEGAHIT-MetaBAT2-test_minigut-bins_summary.txt:md5,c2986e27b93008b06709a59bb298e3ea", + "bat_summary.tsv:md5,ab01c0858ee334804fb97180d1ba321e", + "gtdbtk_summary.tsv:md5,af05337c99159421caf2348dcae802e7" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-14T21:15:53.000167717" + }, "-profile test_single_end": { "content": [ 158, @@ -66,6 +1942,9 @@ "CONCAT_CHECKM_TSV": { "csvtk": "0.31.0" }, + "CONCAT_QUAST_SUMMARY": { + "csvtk": "0.31.0" + }, "CONCOCT_CONCOCT": { "concoct": "1.1.0" }, @@ -160,9 +2039,6 @@ "metaquast": "5.0.2", "python": "3.7.6" }, - "QUAST_BINS_SUMMARY": { - "cp": 9.5 - }, "SEQKIT_STATS": { "seqkit": "2.9.0" }, @@ -374,5 +2250,46 @@ "nextflow": "25.10.0" }, "timestamp": "2025-11-20T08:08:25.158079231" + }, + "ancient": { + "content": [ + [ + "Ancient_DNA/pydamage/analyze/MEGAHIT-test_minigut/MEGAHIT-test_minigut_pydamage_results.csv", + "Ancient_DNA/pydamage/analyze/MEGAHIT-test_minigut_sample2/MEGAHIT-test_minigut_sample2_pydamage_results.csv", + "Ancient_DNA/pydamage/filter/MEGAHIT-test_minigut/MEGAHIT-test_minigut_pydamage_filtered_results.csv", + "Ancient_DNA/pydamage/filter/MEGAHIT-test_minigut_sample2/MEGAHIT-test_minigut_sample2_pydamage_filtered_results.csv", + "Ancient_DNA/variant_calling/consensus/MEGAHIT-test_minigut.fa", + "Ancient_DNA/variant_calling/consensus/MEGAHIT-test_minigut_sample2.fa", + "Ancient_DNA/variant_calling/filtered/MEGAHIT-test_minigut.filtered.vcf.gz", + "Ancient_DNA/variant_calling/filtered/MEGAHIT-test_minigut_sample2.filtered.vcf.gz", + "Ancient_DNA/variant_calling/freebayes/MEGAHIT-test_minigut.vcf.gz", + "Ancient_DNA/variant_calling/freebayes/MEGAHIT-test_minigut_sample2.vcf.gz" + ], + [ + "MEGAHIT-test_minigut_pydamage_filtered_results.csv:md5,6414a400229f9cc5e31368703020b039", + "MEGAHIT-test_minigut_sample2_pydamage_filtered_results.csv:md5,6414a400229f9cc5e31368703020b039", + "MEGAHIT-test_minigut.fa:md5,34fe41ac66dfc601afcfa067f86f2e75", + "MEGAHIT-test_minigut_sample2.fa:md5,f76f599c3048c8794ade2a8f3bfdb205" + ] + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-20T09:32:54.923289645" + }, + "summary-rows": { + "content": [ + 27, + 26, + 27, + 27, + 26 + ], + "meta": { + "nf-test": "0.9.3", + "nextflow": "25.10.0" + }, + "timestamp": "2025-11-20T09:32:55.357874836" } } \ No newline at end of file diff --git a/workflows/mag.nf b/workflows/mag.nf index b7a938564..2b9b4a4bb 100644 --- a/workflows/mag.nf +++ b/workflows/mag.nf @@ -3,49 +3,49 @@ IMPORT MODULES / SUBWORKFLOWS / FUNCTIONS ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ -include { MULTIQC } from '../modules/nf-core/multiqc/main' -include { paramsSummaryMap } from 'plugin/nf-schema' -include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline' -include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline' -include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_mag_pipeline' +include { MULTIQC } from '../modules/nf-core/multiqc/main' +include { paramsSummaryMap } from 'plugin/nf-schema' +include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline' +include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline' +include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_mag_pipeline' // // SUBWORKFLOW: Consisting of a mix of local and nf-core/modules // -include { BINNING_PREPARATION } from '../subworkflows/local/binning_preparation/main' -include { BINNING } from '../subworkflows/local/binning/main' -include { BIN_QC } from '../subworkflows/local/bin_qc/main' -include { BINNING_REFINEMENT } from '../subworkflows/local/binning_refinement/main' -include { VIRUS_IDENTIFICATION } from '../subworkflows/local/virus_identification/main' -include { GTDBTK } from '../subworkflows/local/gtdbtk/main' -include { ANCIENT_DNA_ASSEMBLY_VALIDATION } from '../subworkflows/local/ancient_dna/main' -include { DOMAIN_CLASSIFICATION } from '../subworkflows/local/domain_classification/main' -include { DEPTHS } from '../subworkflows/local/depths/main' -include { LONGREAD_PREPROCESSING } from '../subworkflows/local/preprocessing_longread/main' -include { SHORTREAD_PREPROCESSING } from '../subworkflows/local/preprocessing_shortread/main' -include { ASSEMBLY } from '../subworkflows/local/assembly/main' -include { CATPACK } from '../subworkflows/local/catpack/main' +include { BINNING_PREPARATION } from '../subworkflows/local/binning_preparation/main' +include { BINNING } from '../subworkflows/local/binning/main' +include { BIN_QC } from '../subworkflows/local/bin_qc/main' +include { BINNING_REFINEMENT } from '../subworkflows/local/binning_refinement/main' +include { VIRUS_IDENTIFICATION } from '../subworkflows/local/virus_identification/main' +include { GTDBTK } from '../subworkflows/local/gtdbtk/main' +include { ANCIENT_DNA_ASSEMBLY_VALIDATION } from '../subworkflows/local/ancient_dna/main' +include { DOMAIN_CLASSIFICATION } from '../subworkflows/local/domain_classification/main' +include { DEPTHS } from '../subworkflows/local/depths/main' +include { LONGREAD_PREPROCESSING } from '../subworkflows/local/preprocessing_longread/main' +include { SHORTREAD_PREPROCESSING } from '../subworkflows/local/preprocessing_shortread/main' +include { ASSEMBLY } from '../subworkflows/local/assembly/main' +include { CATPACK } from '../subworkflows/local/catpack/main' // // MODULE: Installed directly from nf-core/modules // -include { GUNZIP as GUNZIP_ASSEMBLYINPUT } from '../modules/nf-core/gunzip' -include { PRODIGAL } from '../modules/nf-core/prodigal/main' -include { PROKKA } from '../modules/nf-core/prokka/main' -include { MMSEQS_DATABASES } from '../modules/nf-core/mmseqs/databases/main' -include { METAEUK_EASYPREDICT } from '../modules/nf-core/metaeuk/easypredict/main' +include { GUNZIP as GUNZIP_ASSEMBLYINPUT } from '../modules/nf-core/gunzip' +include { PRODIGAL } from '../modules/nf-core/prodigal/main' +include { PROKKA } from '../modules/nf-core/prokka/main' +include { MMSEQS_DATABASES } from '../modules/nf-core/mmseqs/databases/main' +include { METAEUK_EASYPREDICT } from '../modules/nf-core/metaeuk/easypredict/main' // // MODULE: Local to the pipeline // -include { QUAST } from '../modules/local/quast_run/main' -include { QUAST_BINS } from '../modules/local/quast_bins/main' -include { QUAST_BINS_SUMMARY } from '../modules/local/quast_bins_summary/main' -include { BIN_SUMMARY } from '../modules/local/bin_summary/main' +include { CSVTK_CONCAT as CONCAT_QUAST_SUMMARY } from '../modules/nf-core/csvtk/concat/main' +include { QUAST } from '../modules/local/quast_run/main' +include { QUAST_BINS } from '../modules/local/quast_bins/main' +include { BIN_SUMMARY } from '../modules/local/bin_summary/main' workflow MAG { take: - ch_raw_short_reads // channel: samplesheet read in from --input + ch_raw_short_reads // channel: samplesheet read in from --input ch_raw_long_reads ch_input_assemblies @@ -409,19 +409,20 @@ workflow MAG { ch_input_for_quast_bins = ch_input_for_postbinning .groupTuple() .map { meta, bins -> - def new_bins = bins.flatten() - [meta, new_bins] + [meta, bins.flatten().sort { a, b -> a.getBaseName() <=> b.getBaseName() }] } QUAST_BINS(ch_input_for_quast_bins) ch_versions = ch_versions.mix(QUAST_BINS.out.versions) - ch_quast_bin_summary = QUAST_BINS.out.quast_bin_summaries.collectFile(keepHeader: true) { meta, summary -> - ["${meta.id}.tsv", summary] - } - QUAST_BINS_SUMMARY(ch_quast_bin_summary.collect()) - ch_versions = ch_versions.mix(QUAST_BINS_SUMMARY.out.versions) - ch_quast_bins_summary = QUAST_BINS_SUMMARY.out.summary + ch_quast_bin_summaries = QUAST_BINS.out.quast_bin_summaries + .collect { _meta, summary -> summary } + .map { summaries -> [[id: 'quast_bin_summary'], summaries.sort { a, b -> a.getBaseName() <=> b.getBaseName() }] } + + CONCAT_QUAST_SUMMARY(ch_quast_bin_summaries, 'tsv', 'tsv') + ch_versions = ch_versions.mix(CONCAT_QUAST_SUMMARY.out.versions) + + ch_quast_bins_summary = CONCAT_QUAST_SUMMARY.out.csv.map { _meta, summary -> summary } } /* @@ -517,7 +518,7 @@ workflow MAG { // // Collate and save software versions // - def topic_versions = Channel.topic("versions") + def topic_versions = channel.topic("versions") .distinct() .branch { entry -> versions_file: entry instanceof Path