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Update metro map to show new modes, reporting features and foldseek

enhancementImprovement for existing functionalityImprovement for existing functionality

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#186 In nf-core/proteinfold;

· JoseEspinosa opened on Oct 8, 2024

Refactor local modules

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#183 In nf-core/proteinfold;

· JoseEspinosa opened on Oct 2, 2024

Update modules before release 2.0.0

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#232 In nf-core/proteinfold;

· JoseEspinosa opened on Dec 6, 2024

Update nf-core config for CRG

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#202 In nf-core/proteinfold;

· JoseEspinosa opened on Oct 25, 2024

Add contributors to manifest

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#285 In nf-core/proteinfold;

· JoseEspinosa opened on Apr 4, 2025

Verify container execution on contemporary GPU compute capabilities

documentationImprovements or additions to documentationImprovements or additions to documentation

WIPWork in progressWork in progress

Status: Open.

Task

#347 In nf-core/proteinfold;

· keiran-rowell-unsw opened on Jul 30, 2025

AlphaFold2 MSA coverage plot includes "padding" rows as if they were sequences of poly-Alanine

bugSomething isn't workingSomething isn't working

Status: Open.

#300 In nf-core/proteinfold;

· tlitfin-unsw opened on May 7, 2025

Update documentation

Status: Draft (not ready).

nf-core/proteinfoldnumber 354

#354 In nf-core/proteinfold;

· tlitfin-unsw opened on Aug 3, 2025

Review output files for each mode before v2.0.0

Status: Open.

Task

#394 In nf-core/proteinfold;

· jscgh opened on Sep 24, 2025

Get rid of interactions samplesheet for rosettafold2na

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#410 In nf-core/proteinfold;

· JoseEspinosa opened on Nov 18, 2025

Boltz 2.2.1 image throwing error

bugSomething isn't workingSomething isn't working

Status: Open.

#417 In nf-core/proteinfold;

· JoseEspinosa opened on Nov 27, 2025

Get rid of meta2 in run_alphafold2_pred

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#425 In nf-core/proteinfold;

· JoseEspinosa opened on Dec 16, 2025

RF2NA: use multi-chain FASTA input and drop interactions sheet

Status: Open (in progress).

nf-core/proteinfoldnumber 420

#420 In nf-core/proteinfold;

· abotlp opened on Dec 2, 2025