diff --git a/modules/nf-neuro/preproc/normalize/meta.yml b/modules/nf-neuro/preproc/normalize/meta.yml index 8ac67ef5..cff489c9 100644 --- a/modules/nf-neuro/preproc/normalize/meta.yml +++ b/modules/nf-neuro/preproc/normalize/meta.yml @@ -35,12 +35,12 @@ input: - bval: type: file description: Text file containing b-values - pattern: "*.{.bval}" + pattern: "*.bval" - bvec: type: file description: Text file containing b-vectors - pattern: "*.{.bvec}" + pattern: "*.bvec" output: - meta: diff --git a/modules/nf-neuro/registration/synthregistration/meta.yml b/modules/nf-neuro/registration/synthregistration/meta.yml index 23f1da09..6b5f46cb 100644 --- a/modules/nf-neuro/registration/synthregistration/meta.yml +++ b/modules/nf-neuro/registration/synthregistration/meta.yml @@ -40,7 +40,7 @@ output: - warped_image: type: file description: Warped image - pattern: "*.{nii,.nii.gz}" + pattern: "*.{nii,nii.gz}" - transfo_image: type: list diff --git a/subworkflows/nf-neuro/registration/meta.yml b/subworkflows/nf-neuro/registration/meta.yml index fdf0836e..55e059e0 100644 --- a/subworkflows/nf-neuro/registration/meta.yml +++ b/subworkflows/nf-neuro/registration/meta.yml @@ -80,7 +80,7 @@ output: Channel containing the image transformation files. This channel contains the necessary transformation files (warp and affine) to perform the anatomical -> dwi space registration. Those files could be used in the future to bring anatomical labels into DWI space for connectomics. - Structure: [ val(meta), [ path(warp), ] ] + Structure: [ val(meta), [ path(warp), path(affine) ] ] pattern: "*.{nii,nii.gz,mat}" - transfo_trk: type: file @@ -88,7 +88,7 @@ output: Channel containing the tractogram transformation files. This channel contains the necessary transformation files (inverseAffine, inverseWarp) to perform the dwi -> anatomical space registration. Those files could be used to register tractograms or bundle in the subject's anatomical space. - Structure: [ val(meta), [ , path(inverseWarp) ] + Structure: [ val(meta), [ path(inverseAffine), path(inverseWarp) ] pattern: "*.{nii,nii.gz,mat}" - ref_warped: type: file diff --git a/subworkflows/nf-neuro/tractoflow/meta.yml b/subworkflows/nf-neuro/tractoflow/meta.yml index 06162196..a98d6602 100644 --- a/subworkflows/nf-neuro/tractoflow/meta.yml +++ b/subworkflows/nf-neuro/tractoflow/meta.yml @@ -168,12 +168,12 @@ output: type: file description: | Transformation matrix from the anatomical space to the diffusion space. - Structure: [ val(meta), [, path(affine)] ] + Structure: [ val(meta), [path(warp), path(affine)] ] - diffusion_to_anatomical: type: file description: | Transformation matrix from the diffusion space to the anatomical space. - Structure: [ val(meta), [path(affine), ] ] + Structure: [ val(meta), [path(affine), path(warp)] ] - t1_native: type: file description: |