From 846afcabc950e2e01b86ae4c91b025ef71947f05 Mon Sep 17 00:00:00 2001 From: arnaudbore Date: Fri, 13 Mar 2026 10:22:04 -0400 Subject: [PATCH] use tissue map instead of mask for PFT tracking --- subworkflows/nf-neuro/tractoflow/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/subworkflows/nf-neuro/tractoflow/main.nf b/subworkflows/nf-neuro/tractoflow/main.nf index fecdee1a..945563e7 100644 --- a/subworkflows/nf-neuro/tractoflow/main.nf +++ b/subworkflows/nf-neuro/tractoflow/main.nf @@ -306,9 +306,9 @@ workflow TRACTOFLOW { // ch_pft_tracking = channel.empty() if ( options.run_pft_tracking ) { - ch_input_pft_tracking = ANATOMICAL_SEGMENTATION.out.wm_mask - .join(ANATOMICAL_SEGMENTATION.out.gm_mask) - .join(ANATOMICAL_SEGMENTATION.out.csf_mask) + ch_input_pft_tracking = ANATOMICAL_SEGMENTATION.out.wm_map + .join(ANATOMICAL_SEGMENTATION.out.gm_map) + .join(ANATOMICAL_SEGMENTATION.out.csf_map) .join(ch_diffusion_model) .join(RECONST_DTIMETRICS.out.fa) TRACKING_PFTTRACKING( ch_input_pft_tracking )