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Added interferogram masking based on geometry watermask #95

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Merged
katia-tymofyeyeva merged 6 commits into from
Aug 21, 2025
Merged

Added interferogram masking based on geometry watermask #95

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3d353fa
Added interferogram masking based on geometry watermask
Aug 20, 2025
a3451f9
Reference points now applied to ifgrams and correction layers.
Aug 20, 2025
3d4ae64
Fixed: msk_file definition, ref point issues, subplot issues, tropo c…
katia-tymofyeyeva Aug 20, 2025
144ba3a
Site file definitions should not be indented
Aug 20, 2025
b13c19b
Method 2 results for transient were not saved. Added functionality to…
katia-tymofyeyeva Aug 20, 2025
1e8c255
Merge branch 'wmsk_methods' of https://github.com/nisar-solid/ATBD in…
katia-tymofyeyeva Aug 20, 2025
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27 changes: 20 additions & 7 deletions methods/coseismic/Coseismic_Requirement_Validation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -146,7 +146,7 @@
"dataset = \"ARIA_S1_new\" # Dataset type: 'ARIA_S1', 'ARIA_S1_new'\n",
"aria_gunw_version = \"3_0_1\"\n",
"\n",
"rundate = \"20250512\" # Date of this Cal/Val run\n",
"rundate = \"20250820\" # Date of this Cal/Val run\n",
"version = \"1\" # Version of this Cal/Val run\n",
"custom_sites = \"/home/jovyan/my_sites.txt\" # Path to custom site metadata\n",
"\n",
Expand Down Expand Up @@ -198,6 +198,11 @@
"mintpy_dir = os.path.join(work_dir, \"MintPy\")\n",
"weather_dir = os.path.join(site_dir)\n",
"\n",
"# === Home directory for saving reports ===\n",
"home_dir = os.path.join(\"/home/jovyan/validation/\", site, requirement, rundate, f\"v{version}\")\n",
"if not os.path.exists(home_dir):\n",
" os.makedirs(home_dir)\n",
"\n",
"# === Log Directory Paths ===\n",
"print(f\" Work directory: {work_dir}\")\n",
"print(f\" GUNW directory: {gunw_dir}\")\n",
Expand All @@ -211,12 +216,12 @@
"else:\n",
" os.chdir(mintpy_dir)\n",
"\n",
" # === Set Expected MintPy Filenames ===\n",
" geom_file = os.path.join(mintpy_dir, \"inputs\", \"geometryGeo.h5\")\n",
" msk_file = os.path.join(mintpy_dir, \"maskTempCoh.h5\") # alt: maskConnComp.h5\n",
" ts_file = os.path.join(mintpy_dir, \"timeseries.h5\")\n",
" vel_file = os.path.join(mintpy_dir, \"velocity.h5\")\n",
" config_file = os.path.join(mintpy_dir, site_info.get('calval_location') + '.cfg')"
"# === Set Expected MintPy Filenames ===\n",
"geom_file = os.path.join(mintpy_dir, \"inputs\", \"geometryGeo.h5\")\n",
"msk_file = os.path.join(mintpy_dir, \"maskTempCoh.h5\") # alt: maskConnComp.h5\n",
"ts_file = os.path.join(mintpy_dir, \"timeseries.h5\")\n",
"vel_file = os.path.join(mintpy_dir, \"velocity.h5\")\n",
"config_file = os.path.join(mintpy_dir, site_info.get('calval_location') + '.cfg')"
]
},
{
Expand Down Expand Up @@ -1487,6 +1492,10 @@
" 'validation_table': validation_table_method1,\n",
" 'ts_functions': ts_functions,\n",
"}\n",
"save_results(**save_params)\n",
"\n",
"# Save the report in the home directory as well\n",
"save_params['save_dir'] = home_dir\n",
"save_results(**save_params)"
]
},
Expand Down Expand Up @@ -1784,6 +1793,10 @@
" 'validation_table': validation_table_method2,\n",
" 'ts_functions': ts_functions,\n",
"}\n",
"save_results(**save_params)\n",
"\n",
"# Save the report in the home directory as well\n",
"save_params['save_dir'] = home_dir\n",
"save_results(**save_params)"
]
},
Expand Down
44 changes: 34 additions & 10 deletions methods/secular/Secular_Requirement_Validation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@
"dataset = \"ARIA_S1_new\" # Dataset type: 'ARIA_S1', 'ARIA_S1_new'\n",
"aria_gunw_version = \"3_0_1\"\n",
"\n",
"rundate = \"20250602\" # Date of this Cal/Val run\n",
"rundate = \"20250820\" # Date of this Cal/Val run\n",
"version = \"1\" # Version of this Cal/Val run\n",
"custom_sites = \"/home/jovyan/my_sites.txt\" # Path to custom site metadata\n",
"\n",
Expand Down Expand Up @@ -204,6 +204,11 @@
"mintpy_dir = os.path.join(work_dir, \"MintPy\")\n",
"weather_dir = os.path.join(site_dir)\n",
"\n",
"# === Home directory for saving reports ===\n",
"home_dir = os.path.join(\"/home/jovyan/validation/\", site, requirement, rundate, f\"v{version}\")\n",
"if not os.path.exists(home_dir):\n",
" os.makedirs(home_dir)\n",
"\n",
"# === Log Directory Paths ===\n",
"print(f\" Work directory: {work_dir}\")\n",
"print(f\" GUNW directory: {gunw_dir}\")\n",
Expand All @@ -217,12 +222,12 @@
"else:\n",
" os.chdir(mintpy_dir)\n",
"\n",
" # === Set Expected MintPy Filenames ===\n",
" geom_file = os.path.join(mintpy_dir, \"inputs\", \"geometryGeo.h5\")\n",
" msk_file = os.path.join(mintpy_dir, \"maskTempCoh.h5\") # alt: maskConnComp.h5\n",
" ts_file = os.path.join(mintpy_dir, \"timeseries.h5\")\n",
" vel_file = os.path.join(mintpy_dir, \"velocity.h5\")\n",
" config_file = os.path.join(mintpy_dir, site_info.get('calval_location') + '.cfg')"
"# === Set Expected MintPy Filenames ===\n",
"geom_file = os.path.join(mintpy_dir, \"inputs\", \"geometryGeo.h5\")\n",
"msk_file = os.path.join(mintpy_dir, \"maskTempCoh.h5\") # alt: maskConnComp.h5\n",
"ts_file = os.path.join(mintpy_dir, \"timeseries.h5\")\n",
"vel_file = os.path.join(mintpy_dir, \"velocity.h5\")\n",
"config_file = os.path.join(mintpy_dir, site_info.get('calval_location') + '.cfg')"
]
},
{
Expand Down Expand Up @@ -517,7 +522,7 @@
" \"-c\", cmap_str,\n",
" \"-u\", \"mm\",\n",
" \"-v\", str(vmin), str(vmax),\n",
" \"--title\", velocity_filename.split('/')[-1],\n",
" \"--title\", 'Velocity after correction for SET',\n",
" \"--noverbose\"\n",
" ]\n",
" view.main(view_opts)\n",
Expand Down Expand Up @@ -626,6 +631,10 @@
"source": [
"# Visualize velocity\n",
"if site_info.get('do_iono') != \"False\":\n",
" \n",
" if site_info.get('do_SET') != \"False\":\n",
" titlestr = 'Velocity after correcting for SET and iono'\n",
" \n",
" view_opts = [\n",
" velocity_filename, \"velocity\",\n",
" \"-m\", msk_file,\n",
Expand All @@ -637,7 +646,7 @@
" \"-c\", cmap_str,\n",
" \"-u\", \"mm\",\n",
" \"-v\", str(vmin), str(vmax),\n",
" \"--title\", velocity_filename.split('/')[-1],\n",
" \"--title\", titlestr,\n",
" \"--noverbose\"\n",
" ]\n",
" view.main(view_opts)\n",
Expand Down Expand Up @@ -745,6 +754,13 @@
"source": [
"# Visualize velocity\n",
"if site_info.get('do_tropo') != \"False\":\n",
" if site_info.get('do_iono') == \"True\" and site_info.get('do_SET') == \"True\":\n",
" titlestr = 'Velocity after correcting for SET, iono, and tropo'\n",
" elif site_info.get('do_iono') == \"True\":\n",
" titlestr = 'Velocity after correcting for iono and tropo'\n",
" elif site_info.get('do_SET') == \"True\":\n",
" titlestr = 'Velocity after correcting for SET and tropo'\n",
" \n",
" view_opts = [\n",
" velocity_filename, \"velocity\",\n",
" \"-m\", msk_file,\n",
Expand All @@ -756,7 +772,7 @@
" \"-c\", cmap_str,\n",
" \"-u\", \"mm\",\n",
" \"-v\", str(vmin), str(vmax),\n",
" \"--title\", velocity_filename.split('/')[-1],\n",
" \"--title\", titlestr,\n",
" \"--noverbose\"\n",
" ]\n",
" view.main(view_opts)\n",
Expand Down Expand Up @@ -1534,6 +1550,10 @@
" 'validation_table': validation_table_method1,\n",
" 'ts_functions': ts_functions,\n",
"}\n",
"save_results(**save_params)\n",
"\n",
"# Save the report in the home directory as well\n",
"save_params['save_dir'] = home_dir\n",
"save_results(**save_params)"
]
},
Expand Down Expand Up @@ -1714,6 +1734,10 @@
" 'validation_table': validation_table_method2,\n",
" 'ts_functions': ts_functions,\n",
"}\n",
"save_results(**save_params)\n",
"\n",
"# Save the report in the home directory as well\n",
"save_params['save_dir'] = home_dir\n",
"save_results(**save_params)"
]
},
Expand Down
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