-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathindex.html
More file actions
383 lines (314 loc) · 10.8 KB
/
index.html
File metadata and controls
383 lines (314 loc) · 10.8 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>Approche statistiques pour les variables cachées en
écologie</title>
<script src="site_libs/header-attrs-2.11/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/paper.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<style type="text/css">code{white-space: pre;}</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<link rel="stylesheet" href="styles.css" type="text/css" />
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.tab('show');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "";
border: none;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
</head>
<body>
<div class="container-fluid main-container">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Statistical Approaches for Hidden Variables in Ecology</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="https://oliviergimenez.github.io/">co-edited by Nathalie Peyrard and Olivier Gimenez</a>
</li>
<li>
<a href="https://github.com/oliviergimenez/code_livre_variables_cachees">
<span class="fa fa-github fa-lg"></span>
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
</div>
<p><br></p>
<p>Data and R code for all chapters:</p>
<ol style="list-style-type: decimal">
<li><a href="gloaguen.html">Trajectory Reconstruction and Behavior
Identification Using Geolocation Data</a>, Marie-Pierre Etienne and
Pierre Gloaguen.</li>
<li><a href="buoro.html">Detection of Eco-Evolutionary Processes in the
Wild: Evolutionary Trade-Offs Between Life History Traits</a>, Valentin
Journé, Sarah Cubaynes, Julien Papaïx and Mathieu Buoro.</li>
<li><a href="gimenez.html">Studying Species Demography and Distribution
in Natural Conditions: Hidden Markov Models</a>, Olivier Gimenez, Julie
Louvrier, Valentin Lauret and Nina Santostasi.</li>
<li><a href="bonnefon.html">Inferring Mechanistic Models in Spatial
Ecology Using a Mechanistic-Statistical Approach</a>, Julien Papaïx,
Samuel Soubeyrand, Olivier Bonnefon, Emily Walker, Julie Louvrier,
Etienne Klein and Lionel Roques.</li>
<li><a href="cheptou.html">Using Coupled Hidden Markov Chains to
Estimate Colonization and Seed Bank Survival in a Metapopulation of
Annual Plants</a>, Pierre-Olivier Cheptou, Stéphane Cordeau, Sebastian
Le Coz and Nathalie Peyrard.</li>
<li><a href="aubert.html">Using Latent Block Models to Detect Structure
in Ecological Networks</a>, Julie Aubert, Pierre Barbillon, Sophie
Donnet and Vincent Miele.</li>
<li><a href="bystrova.html">Latent Factor Models: A Tool for Dimension
Reduction in Joint Species Distribution Models</a>, Daria Bystrova,
Giovanni Poggiato, Julyan Arbel and Wilfried Thuiller.</li>
<li><a href="chiquet.html">The Poisson Log-Normal Model: A Generic
Framework for Analyzing Joint Abundance Distributions</a>, Julien
Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard and
Stéphane Robin.</li>
<li><a href="mortier.html">Supervised Component-Based Generalized Linear
Regression: Method and Extensions</a>, Frédéric Mortier, Jocelyn
Chauvet, Catherine Trottier, Guillaume Cornu and Xavier Bry.</li>
<li><a href="sancristobal.html">Structural Equation Models for the Study
of Ecosystems and Socio-Ecosystems</a>, Fabien Laroche, Jérémy
Froidevaux, Laurent Larrieu and Michel Goulard.</li>
</ol>
<ul>
<li><a href="gloaguen.html">Reconstruction de trajectoires et
identification de comportements à partir de données de
géolocalisation</a></li>
<li><a href="buoro.html">Mise évidence des processus éco-évolutifs en
milieu naturel : le cas des compromis entre traits d’histoire de
vie</a></li>
<li><a href="gimenez.html">Étudier la démographie et la distribution des
espèces en conditions naturelles : les modèles de Markov cachés</a></li>
<li><a href="bonnefon.html">Etudier la dynamique d’une population par
des approches mécanistico-statistiques</a></li>
<li><a href="cheptou.html">Des chaines de Markov cachées couplées pour
estimer la colonisation et la survie dans une métapopulation de plantes
annuelles avec dormance</a></li>
<li><a href="aubert.html">Modèles à blocs latents pour la détection de
structure dans les réseaux écologiques</a></li>
<li><a href="bystrova.html">Modèles à facteurs latents, un outil de
réduction de dimension pour les modèles de distribution d’espèce
joints</a></li>
<li><a href="chiquet.html">Le modèle Poisson log-normal: un cadre
générique pour l’analyse des distributions joint d’abondance</a></li>
<li><a href="mortier.html">La régression linéaire généralisée sur
composantes supervisées et ses extensions</a></li>
<li><a href="sancristobal.html">Les modèles à équations structurelles
pour l’étude des écosystèmes et socio-écosystèmes</a></li>
</ul>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open');
});
});
</script>
<!-- code folding -->
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>