diff --git a/cellbase-app/app/cloud/docker/cellbase-builder/Dockerfile b/cellbase-app/app/cloud/docker/cellbase-builder/Dockerfile
index 17d5accff4..11e3621333 100644
--- a/cellbase-app/app/cloud/docker/cellbase-builder/Dockerfile
+++ b/cellbase-app/app/cloud/docker/cellbase-builder/Dockerfile
@@ -24,8 +24,6 @@ RUN cd /opt/ensembl && \
     git clone https://github.com/Ensembl/ensembl-git-tools.git && \
     git clone https://github.com/Ensembl/ensembl.git && \
     git clone https://github.com/Ensembl/ensembl-variation.git && \
-    git clone https://github.com/Ensembl/ensembl-funcgen.git && \
-    git clone https://github.com/Ensembl/ensembl-compara.git && \
     git clone https://github.com/Ensembl/ensembl-io.git
 
 ENV PERL5LIB=$PERL5LIB:/opt/ensembl/bioperl-live:/opt/ensembl/ensembl/modules:/opt/ensembl/ensembl-variation/modules:/opt/ensembl/ensembl-funcgen/modules:/opt/ensembl/ensembl-compara/modules:/opt/ensembl/lib/perl/5.18.2:/opt/cellbase