PDBFixer problems with prepare_receptor4 from ADT

[groponp]

Dear All,

I'm using PDBfixer to repair my receptor , add missing residues and atoms, and add hydrogens to pH 7.4.
When I use the ouput from PDBFixer I get the following problem.

command: 
prepare_receptor4.py -r 5cfj_pdbfixer_wH.pdb -o 5cfj_pdbfixer_wH.pdbqt -A hydrogens  
´´´ 

érror: 
```bash 
swig/python detected a memory leak of type 'BHtree *', no destructor found.
adding gasteiger charges to peptide
Sorry, there are no Gasteiger parameters available for atom 5cfj_pdbfixer_wH:A:PRO21:O
Sorry, there are no Gasteiger parameters available for atom 5cfj_pdbfixer_wH:A:VAL22:O
Sorry, there are no Gasteiger parameters available for atom 5cfj_pdbfixer_wH:A:ASP26:O
Sorry, there are no Gasteiger parameters available for atom 5cfj_pdbfixer_wH:A:LYS149:O
Warning: hydrogens,  ['HZ3', 'HH', 'HG1', 'HG1', 'HA', 'HA', 'HG', 'HH', 'HG1', 'HG', 'HG1', 'HG1', 'HG1', 'HH', 'HH', 'HG1', 'HH', 'HG1', 'HG1', 'HH', 'HH', 'HG', 'HG1', 'HH', 'HG', 'HG', 'HG1', 'HH', 'HG', 'H']  , with no bonds!
´´´

[peastman]

That error message isn't coming from PDBFixer. You must be using some other program to compute Gasteiger charges.