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Fix deprecated stage names
This was fixed mechanically using the following command: ``` pre-commit migrate-config ```
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.pre-commit-config.yaml

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@@ -1,5 +1,5 @@
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---
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default_stages: [commit, push]
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default_stages: [pre-commit, pre-push]
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default_language_version:
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# force all unspecified python hooks to run python3
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python: python3

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