PySERA/pyproject.toml at main · radiuma-com/PySERA · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "pysera"
version = "2.1.5"
description = "A Python library for radiomics feature extraction with multiprocessing support"
readme = "README.md"
license = "MIT"
authors = [
    { name = "Dr. Mohammad R. Salmanpour", email = "M.salmanpoor66@gmail.com" },
    { name = "Amir Hossein Pouria", email = "amirporia99.1378@gmail.com" },
    { name = "Mehrdad Oveisi", email = "moveisi@cs.ubc.ca" },
    { name = "Arman Rahmim", email = "arman.rahmim@ubc.ca" },
]
maintainers = [
    { name = "Dr. Mohammad R. Salmanpour", email = "M.salmanpoor66@gmail.com" },
    { name = "A.H. Pouria", email = "amirporia99.1378@gmail.com" }
]
keywords = ["medical-imaging", "Standardized-Radiomics-Feature-Extraction", "Quantitative-Analysis", "IBSI-Standardization", "healthcare"]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Healthcare Industry",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Scientific/Engineering :: Image Processing",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Operating System :: OS Independent",
]
requires-python = ">=3.10"
dependencies = [
    "numpy>=2.0.0",
    "pandas>=2.3.1",
    "scikit-learn>=1.7",
    "SimpleITK>=2.5.2",
    "opencv-python>=4.11.0.86",
    "nibabel>=5.3.2",
    "pydicom>=3.0.1",
    "scikit-image>=0.25.2",
    "openpyxl>=3.1.5",
    "pynrrd>=1.1.3",
    "psutil>=7.0.0",
    "scipy>=1.15.3",
    "Pillow>=11.3.0",
    "rt-utils>=1.2.7",
    "connected-components-3d>=3.25.0",
#    "dcmrtstruct2nii>=5",
#    "vtk>=9.5.0",
#    "itk>=5.4.4.post1",
#    "ReliefF>=0.1.2",
#    "sklearn-relief>=1.0.0b2",
#    "scikit-optimize>=0.10.2",
#    "matplotlib>=3.10.5",
#    "kmodes>=0.12.2"
#    "PyWavelets>=1.8.0",
]

[project.optional-dependencies]

dev = [
    "pytest>=7.0",
    "pytest-cov>=4.0",
    "black>=23.0",
    "flake8>=6.0",
    "mypy>=1.0",
]

[project.urls]
Homepage = "https://github.com/radiuma-com/PySERA"
Documentation = "https://pysera.readthedocs.io/"
Repository = "https://github.com/radiuma-com/PySERA.git"
"Bug Reports" = "https://github.com/radiuma-com/PySERA/issues"

[project.scripts]
pysera = "pysera.cli:main"

[tool.setuptools]
packages = ["pysera"]

[tool.setuptools.package-data]
pysera = ["config/*.yaml", "config/*.json"]

[tool.black]
line-length = 88
target-version = ['py38']
include = '\.pyi?$'
extend-exclude = '''
/(
  # directories
  \.eggs
  | \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | build
  | dist
)/
'''

[tool.isort]
profile = "black"
multi_line_output = 3
line_length = 88
known_first_party = ["pysera"]

[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true