Skip to content

Extra check for the Busco parameter #189

@muffato

Description

@muffato

Description of feature

In #187, #122, and #126, the user gave a Buso path that contained /lineages at the end. This made Busco crash because it tried to use /path/to/lineages/lineages/arthropoda_odb10.

In #131 and #151 the user reported another error but if we pay attention to their command-line, they had also included /lineages, so it must have failed for that as well.

Given how frequently it seems to happen, I suggest to check whether the input parameter is called lineages, and take the parent directory instead. This way, it'll just work regardless of what the user inputs.

Metadata

Metadata

Assignees

Labels

enhancementImprovement of the existing features

Projects

Status

Todo

Relationships

None yet

Development

No branches or pull requests

Issue actions