style: Deprecate "OwningX" type aliases for tables. (#473)

Author: molpopgen

src/edge_table.rs

@@ -441,4 +441,5 @@ impl Default for EdgeTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use EdgeTable instead")]
 pub type OwningEdgeTable = EdgeTable;

src/individual_table.rs

@@ -568,4 +568,5 @@ impl Default for IndividualTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use IndividualTable instead")]
 pub type OwningIndividualTable = IndividualTable;

src/lib.rs

@@ -119,18 +119,30 @@ use bindings::tsk_size_t;
 pub(crate) const TSK_NULL: tsk_id_t = -1;
 
 pub use edge_differences::*;
-pub use edge_table::{EdgeTable, EdgeTableRow, OwningEdgeTable};
+#[allow(deprecated)]
+pub use edge_table::OwningEdgeTable;
+pub use edge_table::{EdgeTable, EdgeTableRow};
 pub use error::TskitError;
 pub use flags::*;
-pub use individual_table::{IndividualTable, IndividualTableRow, OwningIndividualTable};
-pub use migration_table::{MigrationTable, MigrationTableRow, OwningMigrationTable};
-pub use mutation_table::{MutationTable, MutationTableRow, OwningMutationTable};
+#[allow(deprecated)]
+pub use individual_table::OwningIndividualTable;
+pub use individual_table::{IndividualTable, IndividualTableRow};
+#[allow(deprecated)]
+pub use migration_table::OwningMigrationTable;
+pub use migration_table::{MigrationTable, MigrationTableRow};
+#[allow(deprecated)]
+pub use mutation_table::OwningMutationTable;
+pub use mutation_table::{MutationTable, MutationTableRow};
 pub use newtypes::*;
-pub use node_table::{
-    NodeDefaults, NodeDefaultsWithMetadata, NodeTable, NodeTableRow, OwningNodeTable,
-};
-pub use population_table::{OwningPopulationTable, PopulationTable, PopulationTableRow};
-pub use site_table::{OwningSiteTable, SiteTable, SiteTableRow};
+#[allow(deprecated)]
+pub use node_table::OwningNodeTable;
+pub use node_table::{NodeDefaults, NodeDefaultsWithMetadata, NodeTable, NodeTableRow};
+#[allow(deprecated)]
+pub use population_table::OwningPopulationTable;
+pub use population_table::{PopulationTable, PopulationTableRow};
+#[allow(deprecated)]
+pub use site_table::OwningSiteTable;
+pub use site_table::{SiteTable, SiteTableRow};
 pub use table_collection::TableCollection;
 pub use traits::IndividualLocation;
 pub use traits::IndividualParents;

src/migration_table.rs

@@ -509,4 +509,5 @@ impl Default for MigrationTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use MigrationTable instead")]
 pub type OwningMigrationTable = MigrationTable;

src/mutation_table.rs

@@ -489,4 +489,5 @@ impl Default for MutationTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use MutationTable instead")]
 pub type OwningMutationTable = MutationTable;

src/node_table.rs

@@ -971,6 +971,7 @@ impl NodeTable {
         => population, population_slice_raw, crate::tsk_id_t);
 }
 
+#[deprecated(since = "0.13.2", note = "use NodeTable instead")]
 pub type OwningNodeTable = NodeTable;
 
 impl Default for NodeTable {

src/population_table.rs

@@ -300,4 +300,5 @@ impl Default for PopulationTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use PopulationTable instead")]
 pub type OwningPopulationTable = PopulationTable;

src/provenance.rs

@@ -324,6 +324,7 @@ impl Default for ProvenanceTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use ProvenanceTable instead")]
 pub type OwningProvenanceTable = ProvenanceTable;
 
 #[cfg(test)]

src/site_table.rs

@@ -376,4 +376,5 @@ impl Default for SiteTable {
     }
 }
 
+#[deprecated(since = "0.13.2", note = "use SiteTable instead")]
 pub type OwningSiteTable = SiteTable;