diff --git a/.github/workflows/pypi-release.yml b/.github/workflows/pypi-release.yml index f978a958..e0fd1da1 100644 --- a/.github/workflows/pypi-release.yml +++ b/.github/workflows/pypi-release.yml @@ -9,8 +9,8 @@ on: - main jobs: - deploy: + if: github.event.pull_request.merged == true name: Publish to PyPI runs-on: ubuntu-latest diff --git a/Dockerfile b/Dockerfile index e6123099..7b31212c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -12,7 +12,7 @@ RUN groupadd -g 1729 no && useradd -m -u 1729 -g no no USER no WORKDIR /home/no -COPY ./examples /home/no/examples +COPY --exclude=**/__pycache__ ../examples /home/no/examples ENV VENV=/home/no/venv RUN python -m venv $VENV diff --git a/docs/custom_timeline.py b/docs/custom_timeline.py deleted file mode 100644 index ef29d2ed..00000000 --- a/docs/custom_timeline.py +++ /dev/null @@ -1,47 +0,0 @@ -import neworder - - -class AsymptoticTimeline(neworder.Timeline): - def __init__(self) -> None: - super().__init__() - self.t = 1.0 - - @property - def start(self) -> float: - return 0.0 - - @property - def end(self) -> float: - return 1.0 - - @property - def nsteps(self) -> int: - return -1 - - @property - def time(self) -> float: - return 1.0 - self.t - - @property - def dt(self) -> float: - return self.t / 2 - - def _next(self) -> None: - self.t /= 2 - - @property - def at_end(self) -> bool: - return False - - -class Model(neworder.Model): - def __init__(self) -> None: - super().__init__(AsymptoticTimeline()) - - def step(self) -> None: - neworder.log(f"{self.timeline.index}: {self.timeline.time}") - if self.timeline.time > 0.99: - self.halt() - - -neworder.run(Model()) diff --git a/docs/overview.md b/docs/overview.md index 9f63ef26..986f62e3 100644 --- a/docs/overview.md +++ b/docs/overview.md @@ -30,12 +30,12 @@ This is provided by: *neworder*'s timeline is conceptually a sequence of steps that are iterated over (calling the Model's `step` and (optionally) `check` methods at each iteration, plus the `finalise` method at the last time point, which is commonly used to post-process the raw model data at the end of the model run. Timelines should not be incremented in client code, this happens automatically within the model. -The framework is extensible but provides four types of timeline (implemented in C++): +The framework is extensible but provides four types of timeline (3 implemented in C++, one in python): - `NoTimeline`: an arbitrary one-step timeline which is designed for continuous-time models in which the model evolution is computed in a single step - `LinearTimeline`: a set of equally-spaced intervals in non-calendar time - `NumericTimeline`: a fully-customisable non-calendar timeline allowing for unequally-spaced intervals -- `CalendarTimeline`: a timeline based on calendar dates with with (multiples of) daily, monthly or annual intervals +- `CalendarTimeline`: a timeline based on calendar dates with steps defined daily, monthly or annually ``` mermaid classDiagram @@ -43,14 +43,11 @@ classDiagram Timeline <|-- LinearTimeline Timeline <|-- NumericTimeline Timeline <|-- CalendarTimeline - Timeline <|-- CustomTimeline class Timeline { +int index - +bool at_end* +float dt* +Any end* - +float nsteps* +Any start* +Any time* +_next() None* @@ -58,10 +55,8 @@ classDiagram } class NoTimeline { - +bool at_end +float dt +Any end - +float nsteps +Any start +Any time +_next() @@ -69,10 +64,8 @@ classDiagram } class LinearTimeline { - +bool at_end +float dt +Any end - +float nsteps +Any start +Any time +_next() @@ -80,10 +73,8 @@ classDiagram } class NumericTimeline { - +bool at_end +float dt +Any end - +float nsteps +Any start +Any time +_next() @@ -91,52 +82,41 @@ classDiagram } class CalendarTimeline { - +bool at_end +float dt - +Any end - +float nsteps - +Any start - +Any time - +_next() - +__repr__() str - } - - class CustomTimeline { - +bool at_end - +float dt - +Any end - +float nsteps - +Any start - +Any time + +date end + +date start + +date time +_next() +__repr__() str } ``` -!!! note "Calendar Timelines" - - Calendar timelines do not provide intraday resolution - - Monthly increments preserve the day of the month (where possible) - - Daylight savings time adjustments are made which affect time intervals where the interval crosses a DST change - - Time intervals are computed in years, on the basis of a year being 365.2475 days +!!! warning Timeline Limitations + + The current implementation of the `neworder.Timeline` interface does not support iteration outside a model. For now, testing a custom implementation requires creating a dummy model to iterate the timeline. A future `neworder` release may refactor timelines in terms of iterables to make development easier. #### Custom timelines -If none of the supplied timelines are suitable, users can implement their own, deriving from the abstract `neworder.Timeline` base class, which provides an `index` property that should not be overidden. The following properties and methods must be overridden in the subclass: +If none of the supplied timelines are suitable, users can implement their own, deriving from the abstract `neworder.Timeline` base class, which provides an `index` property that should not be overidden. + +!!! example "CalendarTimeline" + `neworder.CalendarTimeline` is now implemented in python and can be used as an example of how to implement a custom timeline: + + - Steps are defined in terms of `date` (not `datetime`) + - Monthly increments preserve the day of the month (where possible) + - Time intervals are computed in years, using an ACT/365 basis. + +The following properties and methods must be overridden in the subclass: symbol | type | description -----------|-------------------|--- -`at_end` | `bool` property | whether the timeline has reached it's end point `dt` | `float` property | the size of the current timestep `end` | `Any` property | the end time of the timeline `_next` | `None` method | move to the next timestep (for internal use by model, should not normally be called in client code) -`nsteps` | `int` property | the total number of timesteps `start` | `Any` property | the start time of the timeline `time` | `Any` property | the current time of the timeline `__repr__` | `str` method | (optional) a string representation of the object, defaults to the name of the class -As an example, this open-ended numeric timeline starts at zero and asymptotically converges to 1.0: - -{{ include_snippet("./docs/custom_timeline.py", show_filename=False) }} ### Spatial Domain diff --git a/docs/requirements.txt b/docs/requirements.txt index 891e8f73..b4f06ad4 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -6,4 +6,4 @@ mkdocs-macros-plugin==1.3.7 mkdocs-material==9.6.14 mkdocs-material-extensions==1.3.1 mkdocs-video==1.5.0 -requests==2.32.4 +requests==2.33.0 diff --git a/examples/markov_chain/markov_chain.py b/examples/markov_chain/markov_chain.py index 83ba18f9..23ecfbe5 100644 --- a/examples/markov_chain/markov_chain.py +++ b/examples/markov_chain/markov_chain.py @@ -62,6 +62,6 @@ def step(self) -> None: self.summary.loc[len(self.summary)] = self.pop.state.value_counts().transpose() def finalise(self) -> None: - self.summary["t"] = np.linspace(self.timeline.start, self.timeline.end, self.timeline.nsteps + 1) + self.summary["t"] = np.arange(self.timeline.start, self.timeline.end + 1e-8, self.timeline.dt) self.summary.reset_index(drop=True, inplace=True) self.summary.fillna(0, inplace=True) diff --git a/examples/people/model.py b/examples/people/model.py index d857a28f..60ff1c68 100644 --- a/examples/people/model.py +++ b/examples/people/model.py @@ -5,6 +5,7 @@ import time from datetime import date +from dateutil.relativedelta import relativedelta from population import Population import neworder @@ -20,7 +21,7 @@ out_migration_rate_data = "examples/people/migration-out.csv" # define the evolution timeline -timeline = neworder.CalendarTimeline(date(2011, 1, 1), date(2051, 1, 1), 1, "y") +timeline = neworder.CalendarTimeline(date(2011, 1, 1), relativedelta(years=1), end=date(2051, 1, 1)) # create the model population = Population( diff --git a/examples/people/population.py b/examples/people/population.py index ac3672bc..a70acd56 100644 --- a/examples/people/population.py +++ b/examples/people/population.py @@ -155,7 +155,7 @@ def check(self) -> bool: neworder.log( "check OK: time={} size={} mean_age={:.2f}, pct_female={:.2f} net_migration={} ({}-{})".format( - self.timeline.time.date(), + self.timeline.time, self.size(), self.mean_age(), 100.0 * self.gender_split(), diff --git a/neworder/__init__.py b/neworder/__init__.py index 89fd431a..eaf4c237 100644 --- a/neworder/__init__.py +++ b/neworder/__init__.py @@ -3,7 +3,6 @@ __version__ = importlib.metadata.version("neworder") from _neworder_core import ( - CalendarTimeline, LinearTimeline, Model, MonteCarlo, @@ -22,8 +21,6 @@ verbose, ) -# type: ignore from .domain import Domain, Edge, Space, StateGrid from .mc import as_np - -__all__ = ["as_np", "Domain", "Space", "freethreaded", "thread_id"] +from .timeline import CalendarTimeline diff --git a/neworder/__init__.pyi b/neworder/__init__.pyi index 0ba3f814..67bdb48b 100644 --- a/neworder/__init__.pyi +++ b/neworder/__init__.pyi @@ -6,7 +6,6 @@ A dynamic microsimulation framework"; from __future__ import annotations import collections.abc -import datetime import enum import types import typing @@ -17,6 +16,7 @@ import numpy.typing from . import df, mpi, stats, time from .domain import Domain, Edge, Space, StateGrid from .mc import as_np +from .timeline import CalendarTimeline __all__: list[str] = [ "CalendarTimeline", @@ -43,24 +43,6 @@ __all__: list[str] = [ "StateGrid", ] -class CalendarTimeline(Timeline): - """ - - A calendar-based timeline - """ - @typing.overload - def __init__(self, start: datetime.datetime, end: datetime.datetime, step: typing.SupportsInt, unit: str) -> None: - """ - Constructs a calendar-based timeline, given start and end dates, an increment specified as a multiple of days, months or years - """ - @typing.overload - def __init__(self, start: datetime.datetime, step: typing.SupportsInt, unit: str) -> None: - """ - Constructs an open-ended calendar-based timeline, given a start date and an increment specified as a multiple of days, months or years. - NB the model will run until the Model.halt() method is explicitly called (from inside the step() method). Note also that nsteps() will - return -1 for timelines constructed this way - """ - class LinearTimeline(Timeline): """ diff --git a/neworder/timeline.py b/neworder/timeline.py new file mode 100644 index 00000000..26c1ba94 --- /dev/null +++ b/neworder/timeline.py @@ -0,0 +1,57 @@ +from datetime import date + +from dateutil.relativedelta import relativedelta + +import neworder as no + + +class CalendarTimeline(no.Timeline): + """ + A timeline representing calendar days. At any given step, `time` returns the date at the *start* of the step + For monthly timesteps, preserves day of month. + Numeric step size is computed using an ACT/365 basis and may vary depending on choice of step. + To preserve day of month for month-based timesteps when day >= 28, explicitly pass day=... to `relativedelta` + """ + + def __init__(self, start: date, step: relativedelta, *, end: date | None = None) -> None: + super().__init__() + + if end and end <= start: + raise ValueError("end date must be after start date") + if start + step <= start: + raise ValueError("step must be forward in time") + + self._start = start + self._end = end + self._current = start + self._step = step + + def _next(self) -> date: + if self._end and self._current >= self._end: + raise StopIteration() + self._current += self._step + return self._current + + @property + def start(self) -> date: + return self._start + + @property + def end(self) -> date | float: + return self._end or no.time.FAR_FUTURE + + @property + def time(self) -> date: + return self._current + + @property + def dt(self) -> float: + """Returns year fraction on ACT/365 basis, or 0 if the timeline has ended""" + if self.at_end: + return 0.0 + next: date = self._start + (self.index + 1) * self._step + return (next - self._current).days / 365 + + @property + def at_end(self) -> bool: + return self._end is not None and self._current >= self._end diff --git a/pyproject.toml b/pyproject.toml index 0b8e4e46..75d560f9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,7 @@ dev = [ "requests>=2.32.4", "types-requests", "pybind11-stubgen>=2.5.5", + "types-python-dateutil>=2.9.0.20260124", ] [project.optional-dependencies] diff --git a/src/Module.cpp b/src/Module.cpp index 9750772a..ea6039a7 100644 --- a/src/Module.cpp +++ b/src/Module.cpp @@ -99,7 +99,7 @@ PYBIND11_MODULE(_neworder_core, m) .def_property_readonly("start", &no::Timeline::start, timeline_start_docstr) .def_property_readonly("end", &no::Timeline::end, timeline_end_docstr) .def_property_readonly("index", &no::Timeline::index, timeline_index_docstr) - .def_property_readonly("nsteps", &no::Timeline::nsteps, timeline_nsteps_docstr) + //.def_property_readonly("nsteps", &no::Timeline::nsteps, timeline_nsteps_docstr) .def_property_readonly("dt", &no::Timeline::dt, timeline_dt_docstr) .def_property_readonly("at_end", &no::Timeline::at_end, timeline_at_end_docstr) .def("__repr__", &no::Timeline::repr, timeline_repr_docstr); @@ -114,12 +114,6 @@ PYBIND11_MODULE(_neworder_core, m) py::class_(m, "NumericTimeline", numerictimeline_docstr) .def(py::init&>(), numerictimeline_init_docstr, "times"_a); - py::class_(m, "CalendarTimeline", calendartimeline_docstr) - .def(py::init(), - calendartimeline_init_docstr, "start"_a, "end"_a, "step"_a, "unit"_a) - .def(py::init(), calendartimeline_init_open_docstr, - "start"_a, "step"_a, "unit"_a); - // MC py::class_(m, "MonteCarlo", mc_docstr) // constructor is NOT exposed to python, can only be created within a model diff --git a/src/Module_docstr.cpp b/src/Module_docstr.cpp index e99b59a5..56baf68c 100644 --- a/src/Module_docstr.cpp +++ b/src/Module_docstr.cpp @@ -68,20 +68,6 @@ const char* notimeline_init_docstr = R"""( Constructs an arbitrary one step timeline, where the start and end times are undefined and there is a single step of size zero. Useful for continuous-time models )"""; -const char* calendartimeline_docstr = R"""( - A calendar-based timeline -)"""; - -const char* calendartimeline_init_docstr = R"""( - Constructs a calendar-based timeline, given start and end dates, an increment specified as a multiple of days, months or years -)"""; - -const char* calendartimeline_init_open_docstr = R"""( - Constructs an open-ended calendar-based timeline, given a start date and an increment specified as a multiple of days, months or years. - NB the model will run until the Model.halt() method is explicitly called (from inside the step() method). Note also that nsteps() will - return -1 for timelines constructed this way -)"""; - const char* timeline_start_docstr = R"""( Returns the time of the start of the timeline )"""; diff --git a/src/Timeline.cpp b/src/Timeline.cpp index 824a2e04..250f6eff 100644 --- a/src/Timeline.cpp +++ b/src/Timeline.cpp @@ -1,15 +1,12 @@ #include "Timeline.h" #include "Log.h" -#include - #include py::object no::NoTimeline::time() const { return py::float_(time::never()); } py::object no::NoTimeline::start() const { return py::float_(time::never()); } py::object no::NoTimeline::end() const { return py::float_(time::never()); } -int64_t no::NoTimeline::nsteps() const { return 1; } double no::NoTimeline::dt() const { return 0.0; } void no::NoTimeline::_next() { /* nothing to do, base class increments index */ } @@ -17,21 +14,19 @@ void no::NoTimeline::_next() { /* nothing to do, base class increments index */ bool no::NoTimeline::at_end() const { return m_index > 0; } // used by python __repr__ -std::string no::NoTimeline::repr() const { return ""s % (m_index > 0 ? "True": "False"); } - +std::string no::NoTimeline::repr() const { + return ""s % (m_index > 0 ? "True" : "False"); +} no::LinearTimeline::LinearTimeline(double start, double end, size_t steps) - : m_start(start), m_end(end), m_steps(steps) -{ + : m_start(start), m_end(end), m_steps(steps) { // validate // negative timesteps are disallowed as MC functions will misbehave with dt<0 - if (m_end <= m_start) - { + if (m_end <= m_start) { throw py::value_error("end time (%%) must be after the start time (%%)"s % m_end % m_start); } - if (m_steps < 1) - { + if (m_steps < 1) { throw py::value_error("timeline must have at least one step"); } @@ -41,353 +36,74 @@ no::LinearTimeline::LinearTimeline(double start, double end, size_t steps) } no::LinearTimeline::LinearTimeline(double start, double step) - : m_start(start), m_end(no::time::far_future()), m_dt(step), m_steps(-1) -{ + : m_start(start), m_end(no::time::far_future()), m_dt(step), m_steps(-1) { // validate - if (m_dt <= 0.0) - { + if (m_dt <= 0.0) { throw py::value_error("timeline must have a positive step size, got %%"s % m_dt); } } -double no::LinearTimeline::dt() const -{ - return m_dt; -} - -int64_t no::LinearTimeline::nsteps() const -{ - return m_steps; -} +double no::LinearTimeline::dt() const { return m_dt; } -void no::LinearTimeline::_next() -{ -} +void no::LinearTimeline::_next() {} -bool no::LinearTimeline::at_end() const -{ - return m_steps > 0 && m_index >= m_steps; -} +bool no::LinearTimeline::at_end() const { return m_steps > 0 && m_index >= m_steps; } py::object no::LinearTimeline::time() const { return py::float_(m_start + m_dt * m_index); } py::object no::LinearTimeline::start() const { return py::float_(m_start); } py::object no::LinearTimeline::end() const { return py::float_(m_end); } - -std::string no::LinearTimeline::repr() const -{ +std::string no::LinearTimeline::repr() const { return m_end == no::time::far_future() - ? ""s % m_start % m_dt % time() % m_index - : ""s % m_start % m_end % m_dt % m_steps % time() % m_index; + ? ""s % m_start % m_dt % + time() % m_index + : ""s % m_start % m_end % m_dt % + m_steps % time() % m_index; } - -no::NumericTimeline::NumericTimeline(const std::vector& times) - : m_times(times) -{ - if (m_times.size() < 2) - { +no::NumericTimeline::NumericTimeline(const std::vector& times) : m_times(times) { + if (m_times.size() < 2) { throw py::value_error("timeline must have at least 2 points"); } // check ascending - for (size_t i = 1; i < m_times.size(); ++i) - { - if (m_times[i] <= m_times[i-1]) - { - throw py::value_error("invalid timeline: time at index %% (%%) is not strictly greater than previous (%%)"s - % i % m_times[i] % m_times[i-1]); + for (size_t i = 1; i < m_times.size(); ++i) { + if (m_times[i] <= m_times[i - 1]) { + throw py::value_error("invalid timeline: time at index %% (%%) is not strictly greater than previous (%%)"s % i % + m_times[i] % m_times[i - 1]); } } } -py::object no::NumericTimeline::time() const -{ - return at_end() ? end() : py::float_(m_times[m_index]); -} - -py::object no::NumericTimeline::start() const -{ - return py::float_(m_times.front()); -} +py::object no::NumericTimeline::time() const { return at_end() ? end() : py::float_(m_times[m_index]); } -py::object no::NumericTimeline::end() const -{ - return py::float_(m_times.back()); -} +py::object no::NumericTimeline::start() const { return py::float_(m_times.front()); } -int64_t no::NumericTimeline::nsteps() const -{ - return m_times.size() - 1; -} +py::object no::NumericTimeline::end() const { return py::float_(m_times.back()); } -double no::NumericTimeline::dt() const -{ +double no::NumericTimeline::dt() const { if (m_index >= m_times.size() - 1) return 0.0; - return m_times[m_index+1] - m_times[m_index]; -} - -void no::NumericTimeline::_next() -{ -} - -bool no::NumericTimeline::at_end() const -{ - return m_index >= m_times.size() - 1; -} - - -std::string no::NumericTimeline::repr() const -{ - return ""s - % m_times % (m_times.size() - 1) % time() % m_index; -} - - - -namespace { - -// for incrementing time in months preserving day of month -// e.g. passing 2020,1 will return 29 (leap) -int daysInFollowingMonth(int year, int month) -{ - month +=1; - if (month == 12) - { - year += 1; - month -= 12; - } - static const int days[]{31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31}; - int d = days[month]; - if (month == 1 && ((year % 100 != 0) ^ (year % 400 == 0)) && (year % 4 == 0)) // February of a leap year - ++d; - return d; -} - -no::CalendarTimeline::time_point addDays(no::CalendarTimeline::time_point time, size_t n) -{ - std::time_t t = std::chrono::system_clock::to_time_t(time); - tm* local_tm = std::localtime(&t); - // track whether we cross a DST change - int dst_prev = local_tm->tm_isdst; - local_tm->tm_mday += n; - std::mktime(local_tm); - //no::log("h: %% dst: %% prev: %%"s % local_tm->tm_hour % local_tm->tm_isdst % dst_prev); - - // adjust so that hour of day is preserved across DST changes - if (local_tm->tm_isdst == 0 && dst_prev == 1) - { - local_tm->tm_hour += 1; - } - else if (local_tm->tm_isdst == 1 && dst_prev == 0) - { - local_tm->tm_hour -= 1; - } - - t = std::mktime(local_tm); - - return std::chrono::system_clock::from_time_t(t); + return m_times[m_index + 1] - m_times[m_index]; } +void no::NumericTimeline::_next() {} -no::CalendarTimeline::time_point addMonths(no::CalendarTimeline::time_point time, size_t n, int refDay) -{ - for (size_t i = 0; i < n; ++i) - { - std::time_t t = std::chrono::system_clock::to_time_t(time); - tm* local_tm = std::localtime(&t); - // track whether we cross a DST change - int dst_prev = local_tm->tm_isdst; - // ensure we dont go over end of next month - int difm = daysInFollowingMonth(local_tm->tm_year, local_tm->tm_mon); - if (local_tm->tm_mday > difm) - local_tm->tm_mday = difm; - else - local_tm->tm_mday = refDay; - local_tm->tm_mon += 1; - std::mktime(local_tm); - //no::log("h: %% dst: %% prev: %%"s % local_tm->tm_hour % local_tm->tm_isdst % dst_prev); - - // adjust so that hour of day is preserved across DST changes - if (local_tm->tm_isdst == 0 && dst_prev == 1) - { - local_tm->tm_hour += 1; - } - else if (local_tm->tm_isdst == 1 && dst_prev == 0) - { - local_tm->tm_hour -= 1; - } - - t = std::mktime(local_tm); - - time = std::chrono::system_clock::from_time_t(t); - } - return time; -} +bool no::NumericTimeline::at_end() const { return m_index >= m_times.size() - 1; } +std::string no::NumericTimeline::repr() const { + return ""s % m_times % (m_times.size() - 1) % time() % + m_index; } -no::CalendarTimeline::time_point no::CalendarTimeline::advance(const no::CalendarTimeline::time_point& time) const -{ - switch (m_unit) - { - case 'd': return addDays(time, m_step); - case 'm': return addMonths(time, m_step, m_refDay); - default: // m_unit has already been validated - case 'y': return addMonths(time, m_step * 12, m_refDay); // ensures we deal with leap years correctly - } -} - - -no::CalendarTimeline::CalendarTimeline(time_point start, time_point end, size_t step, char unit) - : m_step(step), m_unit(tolower(unit)), m_times(1, start) -{ - if (m_times[0] >= end) - { - throw py::value_error("start time (%%) must be after end time (%%)"s % py::cast(start) % py::cast(end)); - } - - if (m_step < 1) - { - throw py::value_error("time unit step (%%) must be at least 1"s % step); - } - - if (m_unit != 'd' && m_unit != 'm' && m_unit != 'y') - { - throw py::value_error("invalid time unit '%%', must be one of D,d,M,m,Y,y"s % unit); - } - - std::time_t t = std::chrono::system_clock::to_time_t(start); - tm* local_tm = std::localtime(&t); - m_refDay = local_tm->tm_mday; - - time_point time = m_times[0]; - for(;;) - { - time = advance(time); - if (time >= end) - break; - m_times.push_back(time); - } - m_times.push_back(end); -} - -// open-ended timeline -no::CalendarTimeline::CalendarTimeline(time_point start, size_t step, char unit) - : m_step(step), m_unit(tolower(unit)), m_times(1, start) -{ - if (m_step < 1) - { - throw py::value_error("time unit step (%%) must be at least 1"s % step); - } - - if (m_unit != 'd' && m_unit != 'm' && m_unit != 'y') - { - throw py::value_error("invalid time unit '%%', must be one of D,d,M,m,Y,y"s % unit); - } - - std::time_t t = std::chrono::system_clock::to_time_t(m_times[0]); - tm* local_tm = std::localtime(&t); - m_refDay = local_tm->tm_mday; - - m_currentStep = {start, advance(start) }; - -} - -bool no::CalendarTimeline::at_end() const -{ - return m_times.size() > 1 && m_index >= m_times.size() - 1; -} - -void no::CalendarTimeline::_next() -{ - if (m_times.size() < 2) - { - m_currentStep = { std::get<1>(m_currentStep), advance(std::get<1>(m_currentStep)) }; - } -} - - -double no::CalendarTimeline::dt() const -{ - static const double years_per_sec = 1.0 / (365.2475 * 86400); - if (m_times.size() < 2) - { - return std::chrono::duration_cast(std::get<1>(m_currentStep) - std::get<0>(m_currentStep)).count() * years_per_sec; - } - else - { - if (m_index < m_times.size() - 1) - return std::chrono::duration_cast(m_times[m_index+1] - m_times[m_index]).count() * years_per_sec; - return 0.0; - } -} - -int64_t no::CalendarTimeline::nsteps() const -{ - return m_times.size() > 1 ? m_times.size() - 1: -1; -} - -py::object no::CalendarTimeline::time() const -{ - if (m_times.size() < 2) - { - return py::cast(std::get<0>(m_currentStep)); - } - return at_end() ? end() : py::cast(m_times[m_index]); -} - -py::object no::CalendarTimeline::start() const -{ - return py::cast(m_times[0]); -} - -py::object no::CalendarTimeline::end() const -{ - if (m_times.size() < 2) - { - return py::float_(no::time::far_future()); - } - return py::cast(m_times.back()); -} - - -std::string no::CalendarTimeline::repr() const -{ - if (m_times.size() < 2) - { - return ""s - % start() % m_step % m_unit % time() % m_index; - } - else - { - return ""s - % start() % end() % m_step % m_unit % (m_times.size() - 1) % time() % m_index; - } -} - - // returns a floating point number that compares less than any other number -double no::time::distant_past() -{ - return -std::numeric_limits::infinity(); -} +double no::time::distant_past() { return -std::numeric_limits::infinity(); } // returns a floating point number that compares greater than any other number -double no::time::far_future() -{ - return std::numeric_limits::infinity(); -} +double no::time::far_future() { return std::numeric_limits::infinity(); } // returns a floating point number that compares unequal to (and unordered w.r.t) any other number // thus the following all evaluate to true: never() != never(), !(x < never()), !(x >= never()) (so be careful!) -double no::time::never() -{ - return std::numeric_limits::quiet_NaN(); -} +double no::time::never() { return std::numeric_limits::quiet_NaN(); } // use this rather than direct comparison to never, as NaN != NaN (as above) -bool no::time::isnever(double t) -{ - return std::isnan(t); -} +bool no::time::isnever(double t) { return std::isnan(t); } diff --git a/src/Timeline.h b/src/Timeline.h index 767e28be..df1ccd5c 100644 --- a/src/Timeline.h +++ b/src/Timeline.h @@ -4,21 +4,15 @@ #include "Log.h" -#include - -#include -#include #include - +#include namespace no { // Abstract base class for timelines - implements the basic stepping functionality -class Timeline -{ +class Timeline { public: - - Timeline() : m_index(0) { } + Timeline() : m_index(0) {} virtual ~Timeline() = default; @@ -28,7 +22,6 @@ class Timeline virtual py::object end() const = 0; int64_t index() { return m_index; }; - virtual int64_t nsteps() const = 0; virtual double dt() const = 0; virtual void _next() = 0; @@ -46,15 +39,13 @@ class Timeline private: friend class Model; // this is called internally to ensure index is incremented - void next() - { + void next() { ++m_index; _next(); } }; -class PyTimeline: public Timeline -{ +class PyTimeline : public Timeline { using Timeline::Timeline; using Timeline::operator=; @@ -63,7 +54,6 @@ class PyTimeline: public Timeline py::object start() const override { PYBIND11_OVERRIDE_PURE(py::object, Timeline, start); } py::object end() const override { PYBIND11_OVERRIDE_PURE(py::object, Timeline, end); } - int64_t nsteps() const override { PYBIND11_OVERRIDE_PURE(int64_t, Timeline, nsteps); } double dt() const override { PYBIND11_OVERRIDE_PURE(double, Timeline, dt); } void _next() override { PYBIND11_OVERRIDE_PURE(void, Timeline, _next); } @@ -72,12 +62,10 @@ class PyTimeline: public Timeline std::string repr() const override { PYBIND11_OVERRIDE_NAME(std::string, Timeline, "__repr__", repr); } }; - // An empty (one arbitrary step) timeline. The model's step method will each be called once only -class NEWORDER_EXPORT NoTimeline final : public Timeline -{ +class NEWORDER_EXPORT NoTimeline final : public Timeline { public: - NoTimeline() { } + NoTimeline() {} ~NoTimeline() override = default; NoTimeline(const NoTimeline&) = default; @@ -90,7 +78,6 @@ class NEWORDER_EXPORT NoTimeline final : public Timeline py::object start() const override; py::object end() const override; - int64_t nsteps() const override; double dt() const override; void _next() override; @@ -101,10 +88,8 @@ class NEWORDER_EXPORT NoTimeline final : public Timeline }; // An equally-spaced timeline between 2 numeric time points -class NEWORDER_EXPORT LinearTimeline final : public Timeline -{ +class NEWORDER_EXPORT LinearTimeline final : public Timeline { public: - // Fixed length timeline LinearTimeline(double start, double end, size_t steps); @@ -122,7 +107,6 @@ class NEWORDER_EXPORT LinearTimeline final : public Timeline py::object start() const override; py::object end() const override; - int64_t nsteps() const override; double dt() const override; void _next() override; @@ -138,10 +122,8 @@ class NEWORDER_EXPORT LinearTimeline final : public Timeline size_t m_steps; }; - // A generic numeric timeline, the model developer supplies the entire timeline -class NEWORDER_EXPORT NumericTimeline final : public Timeline -{ +class NEWORDER_EXPORT NumericTimeline final : public Timeline { public: NumericTimeline(const std::vector& times); @@ -156,7 +138,6 @@ class NEWORDER_EXPORT NumericTimeline final : public Timeline py::object start() const override; py::object end() const override; - int64_t nsteps() const override; double dt() const override; void _next() override; @@ -169,67 +150,20 @@ class NEWORDER_EXPORT NumericTimeline final : public Timeline std::vector m_times; }; -// A timeline based on calendar dates and intervals (no intraday resolution, ignores DST adjustments) -class NEWORDER_EXPORT CalendarTimeline final : public Timeline -{ -public: - using time_point = std::chrono::system_clock::time_point; - - // Fixed-end - CalendarTimeline(time_point start, time_point end, size_t step, char unit); - - // Open-ended - CalendarTimeline(time_point start, size_t step, char unit); - - ~CalendarTimeline() override = default; - - CalendarTimeline(const CalendarTimeline&) = default; - CalendarTimeline& operator=(const CalendarTimeline&) = default; - CalendarTimeline(CalendarTimeline&&) = default; - CalendarTimeline& operator=(CalendarTimeline&&) = default; - - py::object time() const override; - py::object start() const override; - py::object end() const override; - - int64_t nsteps() const override; - double dt() const override; - - void _next() override; - - bool at_end() const override; - - std::string repr() const override; - -private: - - // advance to next point - time_point advance(const time_point& time) const; - - size_t m_step; - char m_unit; - int m_refDay; - - // this caches timesteps when the end is known (so we know total number of steps) - std::vector m_times; - // otherwise just store the current step start and end, and a reference day (for monthly increments) - std::tuple m_currentStep; -}; - namespace time { - // returns a floating point number that compares unequal to (and unordered w.r.t) any other number - // thus the following all evaluate to true: never() != never(), !(x < never()), !(x >= never()) (so be careful!) - double never(); +// returns a floating point number that compares unequal to (and unordered w.r.t) any other number +// thus the following all evaluate to true: never() != never(), !(x < never()), !(x >= never()) (so be careful!) +double never(); - // this MUST be used to correctly compare against never since NaN != NaN - bool isnever(double t); +// this MUST be used to correctly compare against never since NaN != NaN +bool isnever(double t); - // returns a floating point number that compares less than any other number - double distant_past(); +// returns a floating point number that compares less than any other number +double distant_past(); - // returns a floating point number that compares greater than any other number - double far_future(); -} +// returns a floating point number that compares greater than any other number +double far_future(); +} // namespace time -} \ No newline at end of file +} // namespace no \ No newline at end of file diff --git a/test/__init__.py b/test/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/test/test_timeline.py b/test/test_timeline.py index 6b3f7da9..f151b8ca 100644 --- a/test/test_timeline.py +++ b/test/test_timeline.py @@ -1,8 +1,8 @@ -from datetime import date, datetime -from typing import cast +from datetime import date import numpy as np import pytest +from dateutil.relativedelta import relativedelta import neworder as no @@ -71,10 +71,6 @@ def start(self) -> float: def end(self) -> float: return 0.0 - @property - def nsteps(self) -> int: - return -1 - @property def time(self) -> float: return 1.0 - self.t @@ -102,11 +98,10 @@ def step(self) -> None: def test_timeline_properties() -> None: n = no.NoTimeline() assert n.index == 0 - assert np.isnan(n.start) # type: ignore[call-overload] - assert np.isnan(n.time) # type: ignore[call-overload] - assert np.isnan(n.end) # type: ignore[call-overload] + assert np.isnan(n.start) + assert np.isnan(n.time) + assert np.isnan(n.end) assert n.dt == 0.0 - assert n.nsteps == 1 with pytest.raises(AttributeError): n.index = 3 # type: ignore[misc] @@ -151,7 +146,6 @@ def test_time() -> None: def test_null_timeline() -> None: t0 = no.NoTimeline() - assert t0.nsteps == 1 assert t0.dt == 0.0 assert not t0.at_end assert t0.index == 0 @@ -181,21 +175,11 @@ def test_timeline_validation() -> None: with pytest.raises(ValueError): no.NumericTimeline([2020]) with pytest.raises(ValueError): - no.CalendarTimeline(date(2021, 1, 1), 0, "y") - with pytest.raises(ValueError): - no.CalendarTimeline(date(2021, 1, 1), 12, "n") - with pytest.raises(ValueError): - no.CalendarTimeline(date(2021, 1, 1), date(2020, 1, 1), 1, "m") + no.CalendarTimeline(date(2021, 1, 1), relativedelta(years=0)) with pytest.raises(ValueError): - no.CalendarTimeline(date(2019, 1, 1), date(2020, 1, 1), 1, "w") + no.CalendarTimeline(date(2021, 1, 1), relativedelta(days=-1)) with pytest.raises(ValueError): - no.CalendarTimeline(date(2019, 1, 1), date(2020, 1, 1), 1, "q") - with pytest.raises(ValueError): - no.CalendarTimeline(date(2019, 1, 1), date(2020, 1, 1), 0, "m") # - - # NOTE: passing a -ve int leads to a *TypeError* (when casting to size_t is attempted) - with pytest.raises(TypeError): - no.CalendarTimeline(date(2019, 1, 1), date(2020, 1, 1), -1, "m") + no.CalendarTimeline(date(2021, 1, 1), end=date(2020, 1, 1), step=relativedelta(months=1)) def test_linear_timeline() -> None: @@ -241,15 +225,16 @@ def __init__(self, calendartimeline: no.Timeline) -> None: super().__init__(calendartimeline, no.MonteCarlo.deterministic_identical_stream) def step(self) -> None: - assert cast(date, self.timeline.time).day == min(dim[self.timeline.index], d) + # check day of month adjusted only in months with fewer days + assert self.timeline.time.day == min(dim[self.timeline.index], d) def finalise(self) -> None: assert self.timeline.dt == 0.0 assert self.timeline.time == self.timeline.end assert self.timeline.index == 6 - for d in range(1, 32): - t = no.CalendarTimeline(date(2020, 1, d), date(2020, 7, d), 1, "m") + for d in range(21, 32): + t = no.CalendarTimeline(date(2020, 1, d), end=date(2020, 7, d), step=relativedelta(months=1, day=d)) m = CalendarModel(t) no.run(m) @@ -269,22 +254,19 @@ def step(self) -> None: m = OpenEndedModel(no.LinearTimeline(0, 1)) assert m.timeline.end == no.time.FAR_FUTURE - assert m.timeline.nsteps == -1 assert m.timeline.dt == 1.0 no.run(m) assert m.i == 11 - m = OpenEndedModel(no.CalendarTimeline(date(2020, 12, 17), 1, "d")) + m = OpenEndedModel(no.CalendarTimeline(date(2020, 12, 17), relativedelta(days=1))) assert m.timeline.end == no.time.FAR_FUTURE - assert m.timeline.nsteps == -1 - assert np.fabs(m.timeline.dt - 1.0 / 365.2475) < 1e-8 + assert np.fabs(m.timeline.dt - 1.0 / 365) < 1e-8 no.run(m) assert m.i == 11 - m = OpenEndedModel(no.CalendarTimeline(date(2020, 12, 17), 1, "m")) + m = OpenEndedModel(no.CalendarTimeline(date(2020, 12, 17), relativedelta(months=1))) assert m.timeline.end == no.time.FAR_FUTURE - assert m.timeline.nsteps == -1 - assert np.fabs(m.timeline.dt - 31.0 / 365.2475) < 1e-8 + assert np.fabs(m.timeline.dt - 31.0 / 365) < 1e-8 no.run(m) assert m.i == 11 @@ -306,19 +288,16 @@ def step(self) -> None: pass m = ConsistencyTest(no.NoTimeline()) - assert m.timeline.nsteps == 1 no.run(m) assert m.timeline.index == 1 m = ConsistencyTest(no.LinearTimeline(2020, 2021, 12)) - assert m.timeline.nsteps == 12 no.run(m) assert m.timeline.index == 12 assert m.timeline.time == 2021 m = ConsistencyTest(no.NumericTimeline([2020 + i / 12 for i in range(13)])) - 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