vitzwitz.github.io/project.html at master · vitzwitz/vitzwitz.github.io · GitHub

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      Help convert the visualization program, ProMOL, from a plug-in into a stand-alone version
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      Develop a k-nearest neighbor search algorithm \& adapted a k-dimensional tree structure
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      Implement modified principal components analysis (PCA) procedure into motif
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      Test program by extracting data files from the Protein Data Bank and utilize NumPy & SciPy
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      Write parsing methods to update motifs & produce tables using Panda
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      Implement original PCA method to help compare the results between protein structures in the same family
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  I am writing methods that will convert the results from indices that locate where each atom exists in that
  protein's k-D tree into matrices consisting specifics, including the atom such as position, occupancy, chain ID,
   residue name, and atom name, and for visualization purposes, into tables using Panda. I am also again writing an
    algorithm based on principal components analysis in order to find which attributes have the greatest variances
    between the search results of protein structures in a protein family.
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