From 424c8d5ee70261b2f9fea3b7de127574a05dce32 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Wed, 21 Dec 2022 23:02:53 +0100 Subject: [PATCH 001/227] Add gitignore file for C/C++/Python boilerplate --- .gitignore | 943 +++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 943 insertions(+) create mode 100644 .gitignore diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..249c065 --- /dev/null +++ b/.gitignore @@ -0,0 +1,943 @@ +# File created using '.gitignore Generator' for Visual Studio Code: https://bit.ly/vscode-gig + +# Created by https://www.toptal.com/developers/gitignore/api/windows,visualstudiocode,visualstudio,pythonvanilla,python,pydev,pycharm+iml,pycharm+all,pycharm,jupyternotebooks,c++,c +# Edit at https://www.toptal.com/developers/gitignore?templates=windows,visualstudiocode,visualstudio,pythonvanilla,python,pydev,pycharm+iml,pycharm+all,pycharm,jupyternotebooks,c++,c + +### C ### +# Prerequisites +*.d + +# Object files +*.o +*.ko +*.obj +*.elf + +# Linker output +*.ilk +*.map +*.exp + +# Precompiled Headers +*.gch +*.pch + +# Libraries +*.lib +*.a +*.la +*.lo + +# Shared objects (inc. Windows DLLs) +*.dll +*.so +*.so.* +*.dylib + +# Executables +*.exe +*.out +*.app +*.i*86 +*.x86_64 +*.hex + +# Debug files +*.dSYM/ +*.su +*.idb +*.pdb + +# Kernel Module Compile Results +*.mod* +*.cmd +.tmp_versions/ +modules.order +Module.symvers +Mkfile.old +dkms.conf + +### C++ ### +# Prerequisites + +# Compiled Object files +*.slo + +# Precompiled Headers + +# Compiled Dynamic libraries + +# Fortran module files +*.mod +*.smod + +# Compiled Static libraries +*.lai + +# Executables + +### JupyterNotebooks ### +# gitignore template for Jupyter Notebooks +# website: http://jupyter.org/ + +.ipynb_checkpoints +*/.ipynb_checkpoints/* + +# IPython +profile_default/ +ipython_config.py + +# Remove previous ipynb_checkpoints +# git rm -r .ipynb_checkpoints/ + +### PyCharm ### +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff +.idea/**/workspace.xml +.idea/**/tasks.xml +.idea/**/usage.statistics.xml +.idea/**/dictionaries +.idea/**/shelf + +# AWS User-specific +.idea/**/aws.xml + +# Generated files +.idea/**/contentModel.xml + +# Sensitive or high-churn files +.idea/**/dataSources/ +.idea/**/dataSources.ids +.idea/**/dataSources.local.xml +.idea/**/sqlDataSources.xml +.idea/**/dynamic.xml +.idea/**/uiDesigner.xml +.idea/**/dbnavigator.xml + +# Gradle +.idea/**/gradle.xml +.idea/**/libraries + +# Gradle and Maven with auto-import +# When using Gradle or Maven with auto-import, you should exclude module files, +# since they will be recreated, and may cause churn. Uncomment if using +# auto-import. +# .idea/artifacts +# .idea/compiler.xml +# .idea/jarRepositories.xml +# .idea/modules.xml +# .idea/*.iml +# .idea/modules +# *.iml +# *.ipr + +# CMake +cmake-build-*/ + +# Mongo Explorer plugin +.idea/**/mongoSettings.xml + +# File-based project format +*.iws + +# IntelliJ +out/ + +# mpeltonen/sbt-idea plugin +.idea_modules/ + +# JIRA plugin +atlassian-ide-plugin.xml + +# Cursive Clojure plugin +.idea/replstate.xml + +# SonarLint plugin +.idea/sonarlint/ + +# Crashlytics plugin (for Android Studio and IntelliJ) +com_crashlytics_export_strings.xml +crashlytics.properties +crashlytics-build.properties +fabric.properties + +# Editor-based Rest Client +.idea/httpRequests + +# Android studio 3.1+ serialized cache file +.idea/caches/build_file_checksums.ser + +### PyCharm Patch ### +# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721 + +# *.iml +# modules.xml +# .idea/misc.xml +# *.ipr + +# Sonarlint plugin +# https://plugins.jetbrains.com/plugin/7973-sonarlint +.idea/**/sonarlint/ + +# SonarQube Plugin +# https://plugins.jetbrains.com/plugin/7238-sonarqube-community-plugin +.idea/**/sonarIssues.xml + +# Markdown Navigator plugin +# https://plugins.jetbrains.com/plugin/7896-markdown-navigator-enhanced +.idea/**/markdown-navigator.xml +.idea/**/markdown-navigator-enh.xml +.idea/**/markdown-navigator/ + +# Cache file creation bug +# See https://youtrack.jetbrains.com/issue/JBR-2257 +.idea/$CACHE_FILE$ + +# CodeStream plugin +# https://plugins.jetbrains.com/plugin/12206-codestream +.idea/codestream.xml + +### PyCharm+all ### +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff + +# AWS User-specific + +# Generated files + +# Sensitive or high-churn files + +# Gradle + +# Gradle and Maven with auto-import +# When using Gradle or Maven with auto-import, you should exclude module files, +# since they will be recreated, and may cause churn. Uncomment if using +# auto-import. +# .idea/artifacts +# .idea/compiler.xml +# .idea/jarRepositories.xml +# .idea/modules.xml +# .idea/*.iml +# .idea/modules +# *.iml +# *.ipr + +# CMake + +# Mongo Explorer plugin + +# File-based project format + +# IntelliJ + +# mpeltonen/sbt-idea plugin + +# JIRA plugin + +# Cursive Clojure plugin + +# SonarLint plugin + +# Crashlytics plugin (for Android Studio and IntelliJ) + +# Editor-based Rest Client + +# Android studio 3.1+ serialized cache file + +### PyCharm+all Patch ### +# Ignores the whole .idea folder and all .iml files +# See https://github.com/joeblau/gitignore.io/issues/186 and https://github.com/joeblau/gitignore.io/issues/360 + +.idea/* + +# Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-249601023 + +*.iml +modules.xml +.idea/misc.xml +*.ipr + +# Sonarlint plugin +.idea/sonarlint + +### PyCharm+iml ### +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff + +# AWS User-specific + +# Generated files + +# Sensitive or high-churn files + +# Gradle + +# Gradle and Maven with auto-import +# When using Gradle or Maven with auto-import, you should exclude module files, +# since they will be recreated, and may cause churn. Uncomment if using +# auto-import. +# .idea/artifacts +# .idea/compiler.xml +# .idea/jarRepositories.xml +# .idea/modules.xml +# .idea/*.iml +# .idea/modules +# *.iml +# *.ipr + +# CMake + +# Mongo Explorer plugin + +# File-based project format + +# IntelliJ + +# mpeltonen/sbt-idea plugin + +# JIRA plugin + +# Cursive Clojure plugin + +# SonarLint plugin + +# Crashlytics plugin (for Android Studio and IntelliJ) + +# Editor-based Rest Client + +# Android studio 3.1+ serialized cache file + +### PyCharm+iml Patch ### +# Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-249601023 + + +### pydev ### +.pydevproject + +### Python ### +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook + +# IPython + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# poetry +# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. +# This is especially recommended for binary packages to ensure reproducibility, and is more +# commonly ignored for libraries. +# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control +#poetry.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# PyCharm +# JetBrains specific template is maintainted in a separate JetBrains.gitignore that can +# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore +# and can be added to the global gitignore or merged into this file. For a more nuclear +# option (not recommended) you can uncomment the following to ignore the entire idea folder. +.idea/ + +### PythonVanilla ### +# Byte-compiled / optimized / DLL files + +# C extensions + +# Distribution / packaging + +# Installer logs + +# Unit test / coverage reports + +# Translations + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow + + +### VisualStudioCode ### +.vscode/* +!.vscode/settings.json +!.vscode/tasks.json +!.vscode/launch.json +!.vscode/extensions.json +!.vscode/*.code-snippets + +# Local History for Visual Studio Code +.history/ + +# Built Visual Studio Code Extensions +*.vsix + +### VisualStudioCode Patch ### +# Ignore all local history of files +.history +.ionide + +# Support for Project snippet scope + +### Windows ### +# Windows thumbnail cache files +Thumbs.db +Thumbs.db:encryptable +ehthumbs.db +ehthumbs_vista.db + +# Dump file +*.stackdump + +# Folder config file +[Dd]esktop.ini + +# Recycle Bin used on file shares +$RECYCLE.BIN/ + +# Windows Installer files +*.cab +*.msi +*.msix +*.msm +*.msp + +# Windows shortcuts +*.lnk + +### VisualStudio ### +## Ignore Visual Studio temporary files, build results, and +## files generated by popular Visual Studio add-ons. +## +## Get latest from https://github.com/github/gitignore/blob/main/VisualStudio.gitignore + +# User-specific files +*.rsuser +*.suo +*.user +*.userosscache +*.sln.docstates + +# User-specific files (MonoDevelop/Xamarin Studio) +*.userprefs + +# Mono auto generated files +mono_crash.* + +# Build results +[Dd]ebug/ +[Dd]ebugPublic/ +[Rr]elease/ +[Rr]eleases/ +x64/ +x86/ +[Ww][Ii][Nn]32/ +[Aa][Rr][Mm]/ +[Aa][Rr][Mm]64/ +bld/ +[Bb]in/ +[Oo]bj/ +[Ll]og/ +[Ll]ogs/ + +# Visual Studio 2015/2017 cache/options directory +.vs/ +# Uncomment if you have tasks that create the project's static files in wwwroot +#wwwroot/ + +# Visual Studio 2017 auto generated files +Generated\ Files/ + +# MSTest test Results +[Tt]est[Rr]esult*/ +[Bb]uild[Ll]og.* + +# NUnit +*.VisualState.xml +TestResult.xml +nunit-*.xml + +# Build Results of an ATL Project +[Dd]ebugPS/ +[Rr]eleasePS/ +dlldata.c + +# Benchmark Results +BenchmarkDotNet.Artifacts/ + +# .NET Core +project.lock.json +project.fragment.lock.json +artifacts/ + +# ASP.NET Scaffolding +ScaffoldingReadMe.txt + +# StyleCop +StyleCopReport.xml + +# Files built by Visual Studio +*_i.c +*_p.c +*_h.h +*.meta +*.iobj +*.ipdb +*.pgc +*.pgd +*.rsp +*.sbr +*.tlb +*.tli +*.tlh +*.tmp +*.tmp_proj +*_wpftmp.csproj +*.tlog +*.vspscc +*.vssscc +.builds +*.pidb +*.svclog +*.scc + +# Chutzpah Test files +_Chutzpah* + +# Visual C++ cache files +ipch/ +*.aps +*.ncb +*.opendb +*.opensdf +*.sdf +*.cachefile +*.VC.db +*.VC.VC.opendb + +# Visual Studio profiler +*.psess +*.vsp +*.vspx +*.sap + +# Visual Studio Trace Files +*.e2e + +# TFS 2012 Local Workspace +$tf/ + +# Guidance Automation Toolkit +*.gpState + +# ReSharper is a .NET coding add-in +_ReSharper*/ +*.[Rr]e[Ss]harper +*.DotSettings.user + +# TeamCity is a build add-in +_TeamCity* + +# DotCover is a Code Coverage Tool +*.dotCover + +# AxoCover is a Code Coverage Tool +.axoCover/* +!.axoCover/settings.json + +# Coverlet is a free, cross platform Code Coverage Tool +coverage*.json +coverage*.xml +coverage*.info + +# Visual Studio code coverage results +*.coverage +*.coveragexml + +# NCrunch +_NCrunch_* +.*crunch*.local.xml +nCrunchTemp_* + +# MightyMoose +*.mm.* +AutoTest.Net/ + +# Web workbench (sass) +.sass-cache/ + +# Installshield output folder +[Ee]xpress/ + +# DocProject is a documentation generator add-in +DocProject/buildhelp/ +DocProject/Help/*.HxT +DocProject/Help/*.HxC +DocProject/Help/*.hhc +DocProject/Help/*.hhk +DocProject/Help/*.hhp +DocProject/Help/Html2 +DocProject/Help/html + +# Click-Once directory +publish/ + +# Publish Web Output +*.[Pp]ublish.xml +*.azurePubxml +# Note: Comment the next line if you want to checkin your web deploy settings, +# but database connection strings (with potential passwords) will be unencrypted +*.pubxml +*.publishproj + +# Microsoft Azure Web App publish settings. Comment the next line if you want to +# checkin your Azure Web App publish settings, but sensitive information contained +# in these scripts will be unencrypted +PublishScripts/ + +# NuGet Packages +*.nupkg +# NuGet Symbol Packages +*.snupkg +# The packages folder can be ignored because of Package Restore +**/[Pp]ackages/* +# except build/, which is used as an MSBuild target. +!**/[Pp]ackages/build/ +# Uncomment if necessary however generally it will be regenerated when needed +#!**/[Pp]ackages/repositories.config +# NuGet v3's project.json files produces more ignorable files +*.nuget.props +*.nuget.targets + +# Microsoft Azure Build Output +csx/ +*.build.csdef + +# Microsoft Azure Emulator +ecf/ +rcf/ + +# Windows Store app package directories and files +AppPackages/ +BundleArtifacts/ +Package.StoreAssociation.xml +_pkginfo.txt +*.appx +*.appxbundle +*.appxupload + +# Visual Studio cache files +# files ending in .cache can be ignored +*.[Cc]ache +# but keep track of directories ending in .cache +!?*.[Cc]ache/ + +# Others +ClientBin/ +~$* +*~ +*.dbmdl +*.dbproj.schemaview +*.jfm +*.pfx +*.publishsettings +orleans.codegen.cs + +# Including strong name files can present a security risk +# (https://github.com/github/gitignore/pull/2483#issue-259490424) +#*.snk + +# Since there are multiple workflows, uncomment next line to ignore bower_components +# (https://github.com/github/gitignore/pull/1529#issuecomment-104372622) +#bower_components/ + +# RIA/Silverlight projects +Generated_Code/ + +# Backup & report files from converting an old project file +# to a newer Visual Studio version. Backup files are not needed, +# because we have git ;-) +_UpgradeReport_Files/ +Backup*/ +UpgradeLog*.XML +UpgradeLog*.htm +ServiceFabricBackup/ +*.rptproj.bak + +# SQL Server files +*.mdf +*.ldf +*.ndf + +# Business Intelligence projects +*.rdl.data +*.bim.layout +*.bim_*.settings +*.rptproj.rsuser +*- [Bb]ackup.rdl +*- [Bb]ackup ([0-9]).rdl +*- [Bb]ackup ([0-9][0-9]).rdl + +# Microsoft Fakes +FakesAssemblies/ + +# GhostDoc plugin setting file +*.GhostDoc.xml + +# Node.js Tools for Visual Studio +.ntvs_analysis.dat +node_modules/ + +# Visual Studio 6 build log +*.plg + +# Visual Studio 6 workspace options file +*.opt + +# Visual Studio 6 auto-generated workspace file (contains which files were open etc.) +*.vbw + +# Visual Studio 6 auto-generated project file (contains which files were open etc.) +*.vbp + +# Visual Studio 6 workspace and project file (working project files containing files to include in project) +*.dsw +*.dsp + +# Visual Studio 6 technical files + +# Visual Studio LightSwitch build output +**/*.HTMLClient/GeneratedArtifacts +**/*.DesktopClient/GeneratedArtifacts +**/*.DesktopClient/ModelManifest.xml +**/*.Server/GeneratedArtifacts +**/*.Server/ModelManifest.xml +_Pvt_Extensions + +# Paket dependency manager +.paket/paket.exe +paket-files/ + +# FAKE - F# Make +.fake/ + +# CodeRush personal settings +.cr/personal + +# Python Tools for Visual Studio (PTVS) +*.pyc + +# Cake - Uncomment if you are using it +# tools/** +# !tools/packages.config + +# Tabs Studio +*.tss + +# Telerik's JustMock configuration file +*.jmconfig + +# BizTalk build output +*.btp.cs +*.btm.cs +*.odx.cs +*.xsd.cs + +# OpenCover UI analysis results +OpenCover/ + +# Azure Stream Analytics local run output +ASALocalRun/ + +# MSBuild Binary and Structured Log +*.binlog + +# NVidia Nsight GPU debugger configuration file +*.nvuser + +# MFractors (Xamarin productivity tool) working folder +.mfractor/ + +# Local History for Visual Studio +.localhistory/ + +# Visual Studio History (VSHistory) files +.vshistory/ + +# BeatPulse healthcheck temp database +healthchecksdb + +# Backup folder for Package Reference Convert tool in Visual Studio 2017 +MigrationBackup/ + +# Ionide (cross platform F# VS Code tools) working folder +.ionide/ + +# Fody - auto-generated XML schema +FodyWeavers.xsd + +# VS Code files for those working on multiple tools +*.code-workspace + +# Local History for Visual Studio Code + +# Windows Installer files from build outputs + +# JetBrains Rider +*.sln.iml + +### VisualStudio Patch ### +# Additional files built by Visual Studio + +# End of https://www.toptal.com/developers/gitignore/api/windows,visualstudiocode,visualstudio,pythonvanilla,python,pydev,pycharm+iml,pycharm+all,pycharm,jupyternotebooks,c++,c + +# Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option) + +.vscode/ +.vs/ +.jupyter/ +coverage/ +build/ +typechecking/ +\#* +\#*/ +*.env \ No newline at end of file From 8579c704f3f77f6f303bc23abc5491579134218e Mon Sep 17 00:00:00 2001 From: Argmaster Date: Wed, 21 Dec 2022 23:25:19 +0100 Subject: [PATCH 002/227] Dump requirements into files --- requirements-dev.txt | 4 ++++ requirements.txt | 1 + 2 files changed, 5 insertions(+) create mode 100644 requirements-dev.txt create mode 100644 requirements.txt diff --git a/requirements-dev.txt b/requirements-dev.txt new file mode 100644 index 0000000..e727269 --- /dev/null +++ b/requirements-dev.txt @@ -0,0 +1,4 @@ +black>=22.0,<23.0 +isort>=5.0,<6.0 +docformatter>=1.4,<2.0 +pylint>=2.15.0,<2.16.0 \ No newline at end of file diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..1287839 --- /dev/null +++ b/requirements.txt @@ -0,0 +1 @@ +numpy>=1.24.0,<1.25.0 \ No newline at end of file From 87631d50d3fa45d3baeb661ef2156561f21d5155 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Wed, 21 Dec 2022 23:25:55 +0100 Subject: [PATCH 003/227] Reformat code with black --- CSSFinder.py | 2062 +++++++++++++++++++++++++++++--------------------- 1 file changed, 1199 insertions(+), 863 deletions(-) diff --git a/CSSFinder.py b/CSSFinder.py index 918e5b1..ce1eb05 100644 --- a/CSSFinder.py +++ b/CSSFinder.py @@ -7,193 +7,258 @@ import sys import numpy as np import math -#import scipy.io + +# import scipy.io from datetime import datetime from os.path import exists + +# fmt: off +PRIMES = ( + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, + 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, 83, 89, + 97, 101, 103, 107, 109, 113, 127, 131, 137, 139, 149, 151, + 157, 163, 167, 173, 179, 181, 191, 193, 197, 199, 211, 223, + 227, 229, 233, 239, 241, 251, 257, 263, 269, 271, 277, 281, + 283, 293, 307, 311, 313, 317, 331, 337, 347, 349, 353, 359, + 367, 373, 379, 383, 389, 397, 401, 409, 419, 421, 431, 433, + 439, 443, 449, 457, 461, 463, 467, 479, 487, 491, 499, 503, + 509, 521, 523, 541, 547, 557, 563, 569, 571, 577, 587, 593, + 599, 601, 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, + 661, 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, 827, + 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, 907, 911, + 919, 929, 937, 941, 947, 953, 967, 971, 977, 983, 991, 997, + 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069, + 1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151, 1153, 1163, + 1171, 1181, 1187, 1193, 1201, 1213, 1217, 1223, 1229, 1231, 1237, 1249, + 1259, 1277, 1279, 1283, 1289, 1291, 1297, 1301, 1303, 1307, 1319, 1321, + 1327, 1361, 1367, 1373, 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, + 1447, 1451, 1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, + 1523, 1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, + 1607, 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, 1783, + 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, 1873, 1877, + 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, + 1993, 1997, 1999, +) +# fmt: on + + ##### -#Matrix Functions: -#Outer product of two vectors -def Outer(p1,p2): - return(np.outer(np.array(p1),np.array(p2)).flatten()) -#Normalization of a vector +# Matrix Functions: +# Outer product of two vectors +def Outer(p1, p2): + return np.outer(np.array(p1), np.array(p2)).flatten() + + +# Normalization of a vector def Normalize(p): - p2=np.dot(p,np.conj(p)) - p2=math.sqrt(np.real(p2)) - return(p/p2) -#Build a projection from a vector + p2 = np.dot(p, np.conj(p)) + p2 = math.sqrt(np.real(p2)) + return p / p2 + + +# Build a projection from a vector def Project(p1): - return(np.outer(np.array(p1),np.conj(np.array(p1)))) -#Scalar product of two matrices -def Product(t1,t2): - k=np.trace(np.matmul(t1,t2)) - return(np.real(k)) -#Generate a random vector with Haar measure + return np.outer(np.array(p1), np.conj(np.array(p1))) + + +# Scalar product of two matrices +def Product(t1, t2): + k = np.trace(np.matmul(t1, t2)) + return np.real(k) + + +# Generate a random vector with Haar measure def Generate(d): - k1=np.random.normal(0,1,d) - k2=np.random.normal(0,1,d) - k3=k1+complex(0,1)*k2 - return(k3) -#Identity Matrix + k1 = np.random.normal(0, 1, d) + k2 = np.random.normal(0, 1, d) + k3 = k1 + complex(0, 1) * k2 + return k3 + + +# Identity Matrix def IdMatrix(d): - p1=np.zeros((int(d),int(d)),dtype=complex) + p1 = np.zeros((int(d), int(d)), dtype=complex) for i1 in range(d): - p1[i1,i1]=1 - return(p1) + p1[i1, i1] = 1 + return p1 + + # Kronecker Product -def Kronecker(p1,p2): - ddd1=len(p1) - ddd2=len(p2) - p3=np.reshape(np.swapaxes(np.tensordot(p1,p2,0),1,2),(ddd1*ddd2,ddd1*ddd2)) +def Kronecker(p1, p2): + ddd1 = len(p1) + ddd2 = len(p2) + p3 = np.reshape( + np.swapaxes(np.tensordot(p1, p2, 0), 1, 2), (ddd1 * ddd2, ddd1 * ddd2) + ) # p3=np.zeros((ddd1*ddd2,ddd1*ddd2),dtype=complex) # for i1 in range(ddd1): # for i2 in range(ddd2): # for i3 in range(ddd1): # for i4 in range(ddd2): # p3[ddd2*i1+i2,ddd2*i3+i4]=p1[i1,i3]*p2[i2,i4] - return(p3) -#Expand an operator to n qubits -def Expand2FS(p1,n,j1): - return(Kronecker(Kronecker(IdMatrix(2**j1),p1),IdMatrix(2**(n-j1-1)))) -#Expand an operator to n quDits -def ExpanddFS(p1,d,n,j1): - return(Kronecker(Kronecker(IdMatrix(int(d**j1)),p1),IdMatrix(int(d**(n-j1-1))))) + return p3 + + +# Expand an operator to n qubits +def Expand2FS(p1, n, j1): + return Kronecker(Kronecker(IdMatrix(2**j1), p1), IdMatrix(2 ** (n - j1 - 1))) + + +# Expand an operator to n quDits +def ExpanddFS(p1, d, n, j1): + return Kronecker( + Kronecker(IdMatrix(int(d**j1)), p1), IdMatrix(int(d ** (n - j1 - 1))) + ) + + # sandwich an operator with a unitarry -def Rotate(rho2,U): +def Rotate(rho2, U): - rho2a=np.matmul(rho2,np.conj(U).T) - rho2a=np.matmul(U,rho2a) + rho2a = np.matmul(rho2, np.conj(U).T) + rho2a = np.matmul(U, rho2a) return rho2a -#MTX file read and write -#[1]: 'matrix' 'vector' -#[2]: 'array' 'coordinate' -#[3]: 'integer' 'real' 'complex' 'pattern' -#[4]: 'general' 'symmetric' 'skew-symmetric' 'hermitian - -def getnum(file,vartype): - readnum=file.readline() - if vartype==0: - return(int(readnum)) - elif vartype==1: - return(float(readnum)) - elif vartype==2: - readnum=readnum.split() - kreadnum=list(map(float,readnum)) - return(kreadnum[0]+complex(0,1)*kreadnum[1]) - -def get3num(file,vartype): - readnum=file.readline() - readnum=readnum.split - if vartype==0: - return([int(readnum[0]),int(readnum[1]),int(readnum[2])]) - elif vartype==1: - return([int(readnum[0]),int(readnum[1]),float(readnum[2])]) - elif vartype==2: - return([int(readnum[0]),int(readnum[1]),float(readnum[2])+complex(float(readnum[3]))]) + +# MTX file read and write +# [1]: 'matrix' 'vector' +# [2]: 'array' 'coordinate' +# [3]: 'integer' 'real' 'complex' 'pattern' +# [4]: 'general' 'symmetric' 'skew-symmetric' 'hermitian + + +def getnum(file, vartype): + readnum = file.readline() + if vartype == 0: + return int(readnum) + elif vartype == 1: + return float(readnum) + elif vartype == 2: + readnum = readnum.split() + kreadnum = list(map(float, readnum)) + return kreadnum[0] + complex(0, 1) * kreadnum[1] + + +def get3num(file, vartype): + readnum = file.readline() + readnum = readnum.split + if vartype == 0: + return [int(readnum[0]), int(readnum[1]), int(readnum[2])] + elif vartype == 1: + return [int(readnum[0]), int(readnum[1]), float(readnum[2])] + elif vartype == 2: + return [ + int(readnum[0]), + int(readnum[1]), + float(readnum[2]) + complex(float(readnum[3])), + ] + def readmtx(filename): - with open(filename,"r") as file: - line=str(file.readline()) - firstline=line.split() - if firstline[1]=='matrix': - shape=0 - elif firstline[1]=='vector': - shape=1 - if firstline[2]=='array': - descr=0 - elif firstline[2]=='coordinate': - descr=1 - if firstline[3]=='integer': - vartype=0 - elif firstline[3]=='real': - vartype=1 - elif firstline[3]=='complex': - vartype=2 - if firstline[4]=='general': - symtype=0 - elif firstline[4]=='symmetric': - symtype=1 - elif firstline[4]=='skew-symmetric': - symtype=2 - elif firstline[4]=='hermitian': - symtype=3 - while line[0]=="%" or len(line)==1: - line=file.readline() - line=list(map(int,line.split())) - if shape==0 and descr==0: - rows=line[0] - cols=line[1] - if vartype==0: - wynik=np.zeros((rows,cols),dtype=int) - elif vartype==1: - wynik=np.zeros((rows,cols),dtype=float) - elif vartype==2: - wynik=np.zeros((rows,cols),dtype=complex) - if symtype==0: + with open(filename, "r") as file: + line = str(file.readline()) + firstline = line.split() + if firstline[1] == "matrix": + shape = 0 + elif firstline[1] == "vector": + shape = 1 + if firstline[2] == "array": + descr = 0 + elif firstline[2] == "coordinate": + descr = 1 + if firstline[3] == "integer": + vartype = 0 + elif firstline[3] == "real": + vartype = 1 + elif firstline[3] == "complex": + vartype = 2 + if firstline[4] == "general": + symtype = 0 + elif firstline[4] == "symmetric": + symtype = 1 + elif firstline[4] == "skew-symmetric": + symtype = 2 + elif firstline[4] == "hermitian": + symtype = 3 + while line[0] == "%" or len(line) == 1: + line = file.readline() + line = list(map(int, line.split())) + if shape == 0 and descr == 0: + rows = line[0] + cols = line[1] + if vartype == 0: + wynik = np.zeros((rows, cols), dtype=int) + elif vartype == 1: + wynik = np.zeros((rows, cols), dtype=float) + elif vartype == 2: + wynik = np.zeros((rows, cols), dtype=complex) + if symtype == 0: for i1 in range(cols): for i2 in range(rows): - wynik[i2][i1]=getnum(file,vartype) - elif symtype==1 and rows==cols: + wynik[i2][i1] = getnum(file, vartype) + elif symtype == 1 and rows == cols: for i1 in range(cols): - for i2 in range(i1,rows): - wynik[i2][i1]=getnum(file,vartype) - wynik[i1][i2]=wynik[i2][i1] - elif symtype==2 and rows==cols: - for i1 in range(0,cols): - for i2 in range(i1+1,rows): - wynik[i2][i1]=getnum(file,vartype) - wynik[i1][i2]=-wynik[i2][i1] - elif symtype==3 and rows==cols: - for i1 in range(0,cols): - for i2 in range(i1,rows): - wynik[i2][i1]=getnum(file,vartype) - wynik[i1][i2]=np.conj(wynik[i2][i1]) - if shape==0 and descr==1: - rows=line[0] - cols=line[1] - nonzeros=line[3] - if vartype==0: - wynik=np.zeros((cols,rows),dtype=int) - elif vartype==1: - wynik=np.zeros((cols,rows),dtype=float) - elif vartype==2: - wynik=np.zeros((cols,rows),dtype=complex) + for i2 in range(i1, rows): + wynik[i2][i1] = getnum(file, vartype) + wynik[i1][i2] = wynik[i2][i1] + elif symtype == 2 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1 + 1, rows): + wynik[i2][i1] = getnum(file, vartype) + wynik[i1][i2] = -wynik[i2][i1] + elif symtype == 3 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1, rows): + wynik[i2][i1] = getnum(file, vartype) + wynik[i1][i2] = np.conj(wynik[i2][i1]) + if shape == 0 and descr == 1: + rows = line[0] + cols = line[1] + nonzeros = line[3] + if vartype == 0: + wynik = np.zeros((cols, rows), dtype=int) + elif vartype == 1: + wynik = np.zeros((cols, rows), dtype=float) + elif vartype == 2: + wynik = np.zeros((cols, rows), dtype=complex) for i1 in range(nonzeros): - entry=get3num(file,vartype) - wynik[entry[1]][entry[0]]=entry[2] - if symtype==1 and rows==cols: + entry = get3num(file, vartype) + wynik[entry[1]][entry[0]] = entry[2] + if symtype == 1 and rows == cols: for i1 in range(rows): - for i2 in range(i1,cols): - if np.abs(wynik[i1][i2])!=0: - wynik[i2][i1]=wynik[i1][i2] + for i2 in range(i1, cols): + if np.abs(wynik[i1][i2]) != 0: + wynik[i2][i1] = wynik[i1][i2] else: - wynik[i1][i2]=wynik[i2][i1] - elif symtype==2 and rows==cols: - for i1 in range(0,cols): - for i2 in range(i1+1,rows): - if np.abs(wynik[i1][i2])!=0: - wynik[i2][i1]=-wynik[i1][i2] + wynik[i1][i2] = wynik[i2][i1] + elif symtype == 2 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1 + 1, rows): + if np.abs(wynik[i1][i2]) != 0: + wynik[i2][i1] = -wynik[i1][i2] else: - wynik[i1][i2]=-wynik[i2][i1] - elif symtype==3 and rows==cols: - for i1 in range(0,cols): - for i2 in range(i1,rows): - if np.abs(wynik[i1][i2])!=0: - wynik[i2][i1]=np.conj(wynik[i1][i2]) + wynik[i1][i2] = -wynik[i2][i1] + elif symtype == 3 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1, rows): + if np.abs(wynik[i1][i2]) != 0: + wynik[i2][i1] = np.conj(wynik[i1][i2]) else: - wynik[i1][i2]=np.conj(wynik[i2][i1]) + wynik[i1][i2] = np.conj(wynik[i2][i1]) file.close() - return(wynik) - -def writemtx(filename,lista,vartype): - if vartype==1: - vartype1="real" - elif vartype==2: - vartype1="complex" - elif vartype==0: - vartype1="integer" - with open(filename,'w') as file: - file.write(" ".join(["%%MatrixMarket matrix array",vartype1,"general\n"])) + return wynik + + +def writemtx(filename, lista, vartype): + if vartype == 1: + vartype1 = "real" + elif vartype == 2: + vartype1 = "complex" + elif vartype == 0: + vartype1 = "integer" + with open(filename, "w") as file: + file.write(" ".join(["%%MatrixMarket matrix array", vartype1, "general\n"])) file.write("%Generated by CSSFinder\n") file.write(str(len(lista))) file.write(" ") @@ -201,7 +266,7 @@ def writemtx(filename,lista,vartype): file.write("\n") for i1 in range(len(lista[0])): for i2 in range(len(lista)): - if vartype==2: + if vartype == 2: file.write(str(np.real(lista[i2][i1]))) file.write(" ") file.write(str(np.imag(lista[i2][i1]))) @@ -211,267 +276,298 @@ def writemtx(filename,lista,vartype): file.write("\n") file.close() -#Random states: -#n qubit state + +# Random states: +# n qubit state def Random2FS(n): - q1=Normalize(Generate(2)) - if n>1: - for l1 in range(n-1): - q1=Outer(q1,Normalize(Generate(2))) - return(Project(q1)) -#n quDit state -def RandomdFS(d,n): - q1=Normalize(Generate(d)) - for l1 in range(n-1): - q1=Outer(q1,Normalize(Generate(d))) - return(Project(q1)) -#biseparable state -def RandomBS(d1,d2): - return Project(Outer(Normalize(Generate(d1)),Normalize(Generate(d2)))) -#biseparable state with three quDits -def Random3P(d1,swaps,i): - if i==0: + q1 = Normalize(Generate(2)) + if n > 1: + for l1 in range(n - 1): + q1 = Outer(q1, Normalize(Generate(2))) + return Project(q1) + + +# n quDit state +def RandomdFS(d, n): + q1 = Normalize(Generate(d)) + for l1 in range(n - 1): + q1 = Outer(q1, Normalize(Generate(d))) + return Project(q1) + + +# biseparable state +def RandomBS(d1, d2): + return Project(Outer(Normalize(Generate(d1)), Normalize(Generate(d2)))) + + +# biseparable state with three quDits +def Random3P(d1, swaps, i): + if i == 0: # aBC - return(RandomBS(d1,d1*d1)) - if i==1: - #AbC - return(Rotate(RandomBS(d1,d1*d1),swaps[0])) - if i==2: - #ABc - return(RandomBS(d1*d1,d1)) -#biseparable for 4 quDits -def Random4P(d1,swaps,i): - if i==0: + return RandomBS(d1, d1 * d1) + if i == 1: + # AbC + return Rotate(RandomBS(d1, d1 * d1), swaps[0]) + if i == 2: + # ABc + return RandomBS(d1 * d1, d1) + + +# biseparable for 4 quDits +def Random4P(d1, swaps, i): + if i == 0: # aBCD - return(RandomBS(d1,d1*d1*d1)) - if i==1: - #AbCD - return(Rotate(RandomBS(d1,d1*d1*d1),swaps[0])) - if i==2: - #ABcD - return(Rotate(RandomBS(d1*d1*d1,d1),swaps[3])) - if i==3: - #ABCd - return(RandomBS(d1*d1*d1,d1)) - if i==4: - #abCD - return(RandomBS(d1*d1,d1*d1)) - if i==5: - #aBcD - return(Rotate(RandomBS(d1*d1,d1*d1),swaps[2])) - if i==6: - #aBCd - return(Rotate(RandomBS(d1*d1,d1*d1),swaps[1])) - -#Rendom Unitaries -#Biseparability -def RandomUBS(a,d1,d2): - if a==0: - rubsp1=(math.cos(0.01*math.pi)+complex(0,1)*math.sin(0.01*math.pi)-1)*Project(Normalize(Generate(d1)))+IdMatrix(d1) - return(Kronecker(rubsp1,IdMatrix(int(d2)))) - if a==1: - rubsp1=(math.cos(0.01*math.pi)+complex(0,1)*math.sin(0.01*math.pi)-1)*Project(Normalize(Generate(d2)))+IdMatrix(d2) - return(Kronecker(IdMatrix(int(d1)),rubsp1)) + return RandomBS(d1, d1 * d1 * d1) + if i == 1: + # AbCD + return Rotate(RandomBS(d1, d1 * d1 * d1), swaps[0]) + if i == 2: + # ABcD + return Rotate(RandomBS(d1 * d1 * d1, d1), swaps[3]) + if i == 3: + # ABCd + return RandomBS(d1 * d1 * d1, d1) + if i == 4: + # abCD + return RandomBS(d1 * d1, d1 * d1) + if i == 5: + # aBcD + return Rotate(RandomBS(d1 * d1, d1 * d1), swaps[2]) + if i == 6: + # aBCd + return Rotate(RandomBS(d1 * d1, d1 * d1), swaps[1]) + + +# Rendom Unitaries +# Biseparability +def RandomUBS(a, d1, d2): + if a == 0: + rubsp1 = ( + math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 + ) * Project(Normalize(Generate(d1))) + IdMatrix(d1) + return Kronecker(rubsp1, IdMatrix(int(d2))) + if a == 1: + rubsp1 = ( + math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 + ) * Project(Normalize(Generate(d2))) + IdMatrix(d2) + return Kronecker(IdMatrix(int(d1)), rubsp1) # return(Kronecker(IdMatrix(d1),unitatry_group.rvs(d2))) -#n qubits -def RandomU2FS(n,j): + +# n qubits +def RandomU2FS(n, j): # p1=unitary_group.rvs(2) - p1=(math.cos(0.01*math.pi)+complex(0,1)*math.sin(0.01*math.pi)-1)*Random2FS(1)+IdMatrix(2) - return(Expand2FS(p1, n, j)) + p1 = ( + math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 + ) * Random2FS(1) + IdMatrix(2) + return Expand2FS(p1, n, j) + -#n quDits -def RandomUdFS(d,n,j): +# n quDits +def RandomUdFS(d, n, j): # p1=unitary_group.rvs(d) - p1=(math.cos(0.01*math.pi)+complex(0,1)*math.sin(0.01*math.pi)-1)*RandomdFS(d,1)+IdMatrix(d) - return(ExpanddFS(p1, d, n, j)) - + p1 = ( + math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 + ) * RandomdFS(d, 1) + IdMatrix(d) + return ExpanddFS(p1, d, n, j) + + # Optimizers -#biseparability -def OptimizeBS(rho2,rho3,d1,d2): - pp1=Product(rho2,rho3) - for obsj1 in range(5*d1*d2): - U=RandomUBS(obsj1%2,d1,d2) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - return(rho2a) -#3-partite entanglement -def Optimized3P(rho2,swaps,rho3,d1,i1): - if i1==0: - pp1=Product(rho2,rho3) - for j1 in range(5*d1**6): - U=RandomUBS(j1%2,d1,d1*d1) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==1: - pp1=Product(rho2,rho3) - for j1 in range(5*d1**6): - U=Rotate(RandomUBS(j1%2,d1,d1*d1),swaps[0]) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==2: - pp1=Product(rho2,rho3) - for j1 in range(5*d1**6): - U=RandomUBS(j1%2,d1*d1,d1) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - return(rho2a) -#four partite entanglement -#swap12,swap13,swap23,swap34 -def Optimized4P(rho2, rho3,swaps, d1,i1): - if i1==0: +# biseparability +def OptimizeBS(rho2, rho3, d1, d2): + pp1 = Product(rho2, rho3) + for obsj1 in range(5 * d1 * d2): + U = RandomUBS(obsj1 % 2, d1, d2) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + return rho2a + + +# 3-partite entanglement +def Optimized3P(rho2, swaps, rho3, d1, i1): + if i1 == 0: + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**6): + U = RandomUBS(j1 % 2, d1, d1 * d1) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 1: + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**6): + U = Rotate(RandomUBS(j1 % 2, d1, d1 * d1), swaps[0]) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 2: + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**6): + U = RandomUBS(j1 % 2, d1 * d1, d1) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + return rho2a + + +# four partite entanglement +# swap12,swap13,swap23,swap34 +def Optimized4P(rho2, rho3, swaps, d1, i1): + if i1 == 0: # aBCD - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=RandomUBS(j1%2,d1,d1**3) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==1: - #AbCD - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=Rotate(RandomUBS(j1%2,d1,d1*d1*d1),swaps[0]) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==2: - #ABcD - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=Rotate(RandomUBS(j1%2,d1**3,d1),swaps[3]) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==3: - #ABCd - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=RandomUBS(j1%2,d1**3,d1) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==4: - #abCD - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=RandomUBS(j1%2,d1*d1,d1*d1) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==5: - #aBcD - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=Rotate(RandomUBS(j1%2,d1*d1,d1*d1),swaps[2]) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - if i1==6: - #aBCd - pp1=Product(rho2,rho3) - for j1 in range(5*d1**8): - U=Rotate(RandomUBS(j1%2,d1*d1,d1*d1),swaps[1]) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - return(rho2a) -#n qubits -def Optimize2FS(rho2,rho3,n): - pp1=Product(rho2,rho3) - for j1 in range(100*n): - U=RandomU2FS(n,j1%n) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - return(rho2a) -#n quDits -def OptimizedFS(rho2,rho3,ddd1,n): - pp1=Product(rho2,rho3) - for j1 in range(20*ddd1*ddd1*n): - U=RandomUdFS(ddd1,n,j1%n) - rho2a=Rotate(rho2,U) - if pp1>Product(rho2a,rho3): - U=U.conj().T - rho2a=Rotate(rho2,U) - while(Product(rho2a, rho3)>pp1): - rho2b=rho2a - pp1=Product(rho2b,rho3) - rho2a=Rotate(rho2a,U) - return(rho2a) - -#SWAP GATES at dimension d + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = RandomUBS(j1 % 2, d1, d1**3) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 1: + # AbCD + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = Rotate(RandomUBS(j1 % 2, d1, d1 * d1 * d1), swaps[0]) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 2: + # ABcD + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = Rotate(RandomUBS(j1 % 2, d1**3, d1), swaps[3]) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 3: + # ABCd + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = RandomUBS(j1 % 2, d1**3, d1) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 4: + # abCD + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = RandomUBS(j1 % 2, d1 * d1, d1 * d1) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 5: + # aBcD + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = Rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[2]) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + if i1 == 6: + # aBCd + pp1 = Product(rho2, rho3) + for j1 in range(5 * d1**8): + U = Rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[1]) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + return rho2a + + +# n qubits +def Optimize2FS(rho2, rho3, n): + pp1 = Product(rho2, rho3) + for j1 in range(100 * n): + U = RandomU2FS(n, j1 % n) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + return rho2a + + +# n quDits +def OptimizedFS(rho2, rho3, ddd1, n): + pp1 = Product(rho2, rho3) + for j1 in range(20 * ddd1 * ddd1 * n): + U = RandomUdFS(ddd1, n, j1 % n) + rho2a = Rotate(rho2, U) + if pp1 > Product(rho2a, rho3): + U = U.conj().T + rho2a = Rotate(rho2, U) + while Product(rho2a, rho3) > pp1: + rho2b = rho2a + pp1 = Product(rho2b, rho3) + rho2a = Rotate(rho2a, U) + return rho2a + + +# SWAP GATES at dimension d def swap123(d): - temp=np.zeros((d**3,d**3),dtype=complex) + temp = np.zeros((d**3, d**3), dtype=complex) for i1 in range(d): - for i2 in range(d): + for i2 in range(d): for i3 in range(d): - temp[i1*d**2+i2*d+i3][i2*d**2+i1*d+i3]=1 - return(temp) + temp[i1 * d**2 + i2 * d + i3][i2 * d**2 + i1 * d + i3] = 1 + return temp + # def swap133(d): # temp=np.zeros((d**3,d**3),dtype=complex) @@ -489,23 +585,30 @@ def swap123(d): # temp[i1*d**2+i2*d+i3][i1*d**2+i3*d+i2]=1 # return(temp) + def swap124(d): - temp=np.zeros((d**4,d**4),dtype=complex) + temp = np.zeros((d**4, d**4), dtype=complex) for i1 in range(d): - for i2 in range(d): + for i2 in range(d): for i3 in range(d): for i4 in range(d): - temp[i1*d**3+i2*d**2+i3*d+i4][i2*d**3+i1*d**2+i3*d+i4]=1 - return(temp) + temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ + i2 * d**3 + i1 * d**2 + i3 * d + i4 + ] = 1 + return temp + def swap134(d): - temp=np.zeros((d**4,d**4),dtype=complex) + temp = np.zeros((d**4, d**4), dtype=complex) for i1 in range(d): - for i2 in range(d): + for i2 in range(d): for i3 in range(d): for i4 in range(d): - temp[i1*d**3+i2*d**2+i3*d+i4][i3*d**3+i2*d**2+i1*d+i4]=1 - return(temp) + temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ + i3 * d**3 + i2 * d**2 + i1 * d + i4 + ] = 1 + return temp + # def swap144(d): # temp=np.zeros((d**4,d**4),dtype=complex) @@ -516,14 +619,18 @@ def swap134(d): # temp[i1*d**3+i2*d**2+i3*d+i4][i4*d**3+i2*d**2+i3*d+i1]=1 # return(temp) + def swap234(d): - temp=np.zeros((d**4,d**4),dtype=complex) + temp = np.zeros((d**4, d**4), dtype=complex) for i1 in range(d): - for i2 in range(d): + for i2 in range(d): for i3 in range(d): for i4 in range(d): - temp[i1*d**3+i2*d**2+i3*d+i4][i1*d**3+i3*d**2+i2*d+i4]=1 - return(temp) + temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ + i1 * d**3 + i3 * d**2 + i2 * d + i4 + ] = 1 + return temp + # def swap244(d): # temp=np.zeros((d**4,d**4),dtype=complex) @@ -534,237 +641,308 @@ def swap234(d): # temp[i1*d**3+i2*d**2+i3*d+i4][i1*d**3+i4*d**2+i3*d+i4]=1 # return(temp) + def swap344(d): - temp=np.zeros((d**4,d**4),dtype=complex) + temp = np.zeros((d**4, d**4), dtype=complex) for i1 in range(d): - for i2 in range(d): + for i2 in range(d): for i3 in range(d): for i4 in range(d): - temp[i1*d**3+i2*d**2+i3*d+i4][i1*d**3+i2*d**2+i4*d+i3]=1 - return(temp) -#Initialize files -#read rho + temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ + i1 * d**3 + i2 * d**2 + i4 * d + i3 + ] = 1 + return temp + + +# Initialize files +# read rho def Initrho0(prefix): -# return(scipy.io.mmread("_".join([prefix,"in.mtx"]))) - return(readmtx("_".join([prefix,"in.mtx"]))) -#read or generate rho1 -def Initrho1(prefix,rho,mode,d1,vis): - if exists("".join([prefix,"_out_",str(vis),".mtx"])): -# return(scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"]))) - return(readmtx("".join([prefix,"_out_",str(vis),".mtx"]))) - elif exists("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"])): - return(readmtx("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"]))) - else: - rhoa=np.zeros((len(rho),len(rho)),dtype=complex) + # return(scipy.io.mmread("_".join([prefix,"in.mtx"]))) + return readmtx("_".join([prefix, "in.mtx"])) + + +# read or generate rho1 +def Initrho1(prefix, rho, mode, d1, vis): + if exists("".join([prefix, "_out_", str(vis), ".mtx"])): + # return(scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"]))) + return readmtx("".join([prefix, "_out_", str(vis), ".mtx"])) + elif exists( + "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ): + return readmtx( + "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ) + else: + rhoa = np.zeros((len(rho), len(rho)), dtype=complex) for j1 in range(len(rho)): - rhoa[j1][j1]=rho[j1][j1] - return(rhoa) -#Too slow convergence error -def tooslow(counter,prefix,vis): - with open("".join([prefix,"_abort_",str(mode),"_",str(d1),"_",str(vis),".mtx"]),'w') as file: + rhoa[j1][j1] = rho[j1][j1] + return rhoa + + +# Too slow convergence error +def tooslow(counter, prefix, vis): + with open( + "".join([prefix, "_abort_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]), + "w", + ) as file: file.write("The program has done 10% of planned trails, but it found only ") file.write(str(counter)) file.write(" corrections and it was terminated.\n") file.write("Increase the number of trails or decrease the visibility.\n") file.close() + + def showtooslow(): if True: - print(" ███▄ █ ▓█████ ██▒ █▓▓█████ ██▀███ ▄████ ██▓ ██▒ █▓▓█████ █ ██ ██▓███ ") + print( + " ███▄ █ ▓█████ ██▒ █▓▓█████ ██▀███ ▄████ ██▓ ██▒ █▓▓█████ █ ██ ██▓███ " + ) if True: - print(" ██ ▀█ █ ▓█ ▀▓██░ █▒▓█ ▀ ▓██ ▒ ██▒ ██▒ ▀█▒▓██▒▓██░ █▒▓█ ▀ ██ ▓██▒▓██░ ██▒") - print("▓██ ▀█ ██▒▒███ ▓██ █▒░▒███ ▓██ ░▄█ ▒ ▒██░▄▄▄░▒██▒ ▓██ █▒░▒███ ▓██ ▒██░▓██░ ██▓▒") - print("▓██▒ ▐▌██▒▒▓█ ▄ ▒██ █░░▒▓█ ▄ ▒██▀▀█▄ ░▓█ ██▓░██░ ▒██ █░░▒▓█ ▄ ▓▓█ ░██░▒██▄█▓▒ ▒") - print("▒██░ ▓██░░▒████▒ ▒▀█░ ░▒████▒░██▓ ▒██▒ ░▒▓███▀▒░██░ ▒▀█░ ░▒████▒ ▒▒█████▓ ▒██▒ ░ ░") + print( + " ██ ▀█ █ ▓█ ▀▓██░ █▒▓█ ▀ ▓██ ▒ ██▒ ██▒ ▀█▒▓██▒▓██░ █▒▓█ ▀ ██ ▓██▒▓██░ ██▒" + ) + print( + "▓██ ▀█ ██▒▒███ ▓██ █▒░▒███ ▓██ ░▄█ ▒ ▒██░▄▄▄░▒██▒ ▓██ █▒░▒███ ▓██ ▒██░▓██░ ██▓▒" + ) + print( + "▓██▒ ▐▌██▒▒▓█ ▄ ▒██ █░░▒▓█ ▄ ▒██▀▀█▄ ░▓█ ██▓░██░ ▒██ █░░▒▓█ ▄ ▓▓█ ░██░▒██▄█▓▒ ▒" + ) + print( + "▒██░ ▓██░░▒████▒ ▒▀█░ ░▒████▒░██▓ ▒██▒ ░▒▓███▀▒░██░ ▒▀█░ ░▒████▒ ▒▒█████▓ ▒██▒ ░ ░" + ) if True: - print("░ ▒░ ▒ ▒ ░░ ▒░ ░ ░ ▐░ ░░ ▒░ ░░ ▒▓ ░▒▓░ ░▒ ▒ ░▓ ░ ▐░ ░░ ▒░ ░ ░▒▓▒ ▒ ▒ ▒▓▒░ ░ ░") - print("░ ░░ ░ ▒░ ░ ░ ░ ░ ░░ ░ ░ ░ ░▒ ░ ▒░ ░ ░ ▒ ░ ░ ░░ ░ ░ ░ ░░▒░ ░ ░ ░▒ ░") - print(" ░ ░ ░ ░ ░░ ░ ░░ ░ ░ ░ ░ ▒ ░ ░░ ░ ░░░ ░ ░ ░░") - print(" ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░") - print(" ░ ░") + print( + "░ ▒░ ▒ ▒ ░░ ▒░ ░ ░ ▐░ ░░ ▒░ ░░ ▒▓ ░▒▓░ ░▒ ▒ ░▓ ░ ▐░ ░░ ▒░ ░ ░▒▓▒ ▒ ▒ ▒▓▒░ ░ ░" + ) + print( + "░ ░░ ░ ▒░ ░ ░ ░ ░ ░░ ░ ░ ░ ░▒ ░ ▒░ ░ ░ ▒ ░ ░ ░░ ░ ░ ░ ░░▒░ ░ ░ ░▒ ░" + ) + print( + " ░ ░ ░ ░ ░░ ░ ░░ ░ ░ ░ ░ ▒ ░ ░░ ░ ░░░ ░ ░ ░░" + ) + print( + " ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░" + ) + print(" ░ ░") -#Wrong dimension -def wrongdim(prefix,mode): - with open("".join([prefix,"_wrong_dim_.txt"]),'w') as file: +# Wrong dimension +def wrongdim(prefix, mode): + with open("".join([prefix, "_wrong_dim_.txt"]), "w") as file: file.write("Dimension of the imput state not compatible with the declared mode") file.close() -#Read symmetry transformations +# Read symmetry transformations def DefineSym(prefix): - symlist1=[] - symlist2=[] - symj1=0 - symj2=0 - if exists("_".join([prefix,"sym_0_0.mtx"])): - symflag=True - while exists("_".join([prefix,"sym",str(symj1),"0.mtx"])): - while exists("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"])): -# symlist2.append(scipy.io.mmread("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"]))) - symlist2.append(readmtx("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"]))) - symj2=symj2+1 - symj2=0 + symlist1 = [] + symlist2 = [] + symj1 = 0 + symj2 = 0 + if exists("_".join([prefix, "sym_0_0.mtx"])): + symflag = True + while exists("_".join([prefix, "sym", str(symj1), "0.mtx"])): + while exists("".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"])): + # symlist2.append(scipy.io.mmread("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"]))) + symlist2.append( + readmtx("".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"])) + ) + symj2 = symj2 + 1 + symj2 = 0 symlist1.append(symlist2) - symj1=symj1+1 - return(symlist1) -#Apply symmetries to a state -def ApplySym(rho,symlist1): - asrho0=rho + symj1 = symj1 + 1 + return symlist1 + + +# Apply symmetries to a state +def ApplySym(rho, symlist1): + asrho0 = rho for asj1 in range(len(symlist1)): for asj2 in range(len(symlist1[asj1])): - asrho0=asrho0+Rotate(asrho0,symlist1[asj1][asj2]) - asrho0=asrho0/np.trace(asrho0) - return(asrho0) -#Define projection -def DefineProj(projflag,prefix): - if exists("_".join([prefix,"proj",".mtx"])): - projflag=True -# return(scipy.io.mmread("_".join([prefix,"proj.mtx"]))) - return(readmtx("_".join([prefix,"proj.mtx"]))) + asrho0 = asrho0 + Rotate(asrho0, symlist1[asj1][asj2]) + asrho0 = asrho0 / np.trace(asrho0) + return asrho0 + + +# Define projection +def DefineProj(projflag, prefix): + if exists("_".join([prefix, "proj", ".mtx"])): + projflag = True + # return(scipy.io.mmread("_".join([prefix,"proj.mtx"]))) + return readmtx("_".join([prefix, "proj.mtx"])) else: - return([[]]) -#Gilbert algorithm -def Gilbert(mode,prefix,vis,rho,steps,corrs,d1,d2,verboseflag): - rho1=Initrho1(prefix, rho,mode,d1,vis) - symflag=False - symlist=DefineSym(prefix) - if len(symlist)>0: - symflag=True + return [[]] + + +# Gilbert algorithm +def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): + rho1 = Initrho1(prefix, rho, mode, d1, vis) + symflag = False + symlist = DefineSym(prefix) + if len(symlist) > 0: + symflag = True print(len(symlist)) - projflag=False - proj1=DefineProj(projflag, prefix) + projflag = False + proj1 = DefineProj(projflag, prefix) # if symflag==True: # rho1=ApplySym(rho1, symlist) - if projflag==True: - rho1=Rotate(rho1, proj1) - lastcorr=0 - currentcorr=0 - ll=[] - counter=0 - flag=0 - trail=0 - if exists("".join([prefix,"_list_",str(vis),".mtx"])) and exists("".join([prefix,"_out_",str(vis),".mtx"])): -# ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2=readmtx("".join([prefix,"_list_",str(vis),".mtx"])) - trail=int(ll2[len(ll2)-1][0]) - counter=int(ll2[len(ll2)-1][1]) + if projflag == True: + rho1 = Rotate(rho1, proj1) + lastcorr = 0 + currentcorr = 0 + ll = [] + counter = 0 + flag = 0 + trail = 0 + if exists("".join([prefix, "_list_", str(vis), ".mtx"])) and exists( + "".join([prefix, "_out_", str(vis), ".mtx"]) + ): + # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) + ll2 = readmtx("".join([prefix, "_list_", str(vis), ".mtx"])) + trail = int(ll2[len(ll2) - 1][0]) + counter = int(ll2[len(ll2) - 1][1]) for i3 in range(len(ll2)): - ll.append([int(ll2[i3][0]),int(ll2[i3][1]),ll2[i3][2]]) - if len(ll)==1: - currentcorr=ll[0][0] - elif len(ll)>1: - currentcorr=ll[len(ll)-1][0] - lastcorr=ll[len(ll)-2][0] - if exists("".join([prefix,"_list_",str(mode),"_",str(d1),"_",str(vis),".mtx"])) and exists("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"])): -# ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2=readmtx("".join([prefix,"_list_",str(mode),"_",str(d1),"_",str(vis),".mtx"])) - trail=int(ll2[len(ll2)-1][0]) - counter=int(ll2[len(ll2)-1][1]) + ll.append([int(ll2[i3][0]), int(ll2[i3][1]), ll2[i3][2]]) + if len(ll) == 1: + currentcorr = ll[0][0] + elif len(ll) > 1: + currentcorr = ll[len(ll) - 1][0] + lastcorr = ll[len(ll) - 2][0] + if exists( + "".join([prefix, "_list_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ) and exists( + "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ): + # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) + ll2 = readmtx( + "".join([prefix, "_list_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ) + trail = int(ll2[len(ll2) - 1][0]) + counter = int(ll2[len(ll2) - 1][1]) for i3 in range(len(ll2)): - ll.append([int(ll2[i3][0]),int(ll2[i3][1]),ll2[i3][2]]) - if len(ll)==1: - currentcorr=ll[0][0] - elif len(ll)>1: - currentcorr=ll[len(ll)-1][0] - lastcorr=ll[len(ll)-2][0] - if steps<0: - steps=trail-steps - steps=steps-steps%10 - if corrs<0: - corrs=counter-corrs - corrs=corrs-corrs%50 - now=datetime.now() - if verboseflag==True: - print(now.strftime("%d/%m/%Y %H:%M:%S")," Report: proceeding with",abs(steps)-trail," iterations and ",abs(corrs)-counter," corrections.") - realflag=True + ll.append([int(ll2[i3][0]), int(ll2[i3][1]), ll2[i3][2]]) + if len(ll) == 1: + currentcorr = ll[0][0] + elif len(ll) > 1: + currentcorr = ll[len(ll) - 1][0] + lastcorr = ll[len(ll) - 2][0] + if steps < 0: + steps = trail - steps + steps = steps - steps % 10 + if corrs < 0: + corrs = counter - corrs + corrs = corrs - corrs % 50 + now = datetime.now() + if verboseflag == True: + print( + now.strftime("%d/%m/%Y %H:%M:%S"), + " Report: proceeding with", + abs(steps) - trail, + " iterations and ", + abs(corrs) - counter, + " corrections.", + ) + realflag = True for realcheck1 in range(len(rho)): for realcheck2 in range(len(rho)): - if np.imag(rho[realcheck1][realcheck2])!=0: - realflag=False + if np.imag(rho[realcheck1][realcheck2]) != 0: + realflag = False break - if realflag==True and verboseflag==True : + if realflag == True and verboseflag == True: print("\n") - print("Input state strictly real. Imaginary parts of the output state will be discarded") - aa1=Product(rho,rho) - aa4=2*Product(rho,rho1) - aa6=Product(rho1,rho1) - rho3=rho-rho1 - dd1=Product(rho1,rho3) - if mode==3: - swaps=[swap123(d1)] - elif mode==4: - swaps=[swap124(d1),swap134(d1),swap234(d1),swap344(d1)] + print( + "Input state strictly real. Imaginary parts of the output state will be discarded" + ) + aa1 = Product(rho, rho) + aa4 = 2 * Product(rho, rho1) + aa6 = Product(rho1, rho1) + rho3 = rho - rho1 + dd1 = Product(rho1, rho3) + if mode == 3: + swaps = [swap123(d1)] + elif mode == 4: + swaps = [swap124(d1), swap134(d1), swap234(d1), swap344(d1)] # else: # swaps=[] - if len(ll)==0 or ll[len(ll)-1][2]>0.000001: - carryonflag=True; + if len(ll) == 0 or ll[len(ll) - 1][2] > 0.000001: + carryonflag = True else: - carryonflag=False - while trail<=abs(steps) and counter<=abs(corrs) and (len(ll)==0 or ll[len(ll)-1][2]>0.0000001): - trail=trail+1 - if currentcorr-lastcorr>(steps-trail): - if verboseflag==True: + carryonflag = False + while ( + trail <= abs(steps) + and counter <= abs(corrs) + and (len(ll) == 0 or ll[len(ll) - 1][2] > 0.0000001) + ): + trail = trail + 1 + if currentcorr - lastcorr > (steps - trail): + if verboseflag == True: print("Too few steps left. Quitting") break - if divmod(10*trail/abs(steps),1)[1]==0: - if counter<50: - tooslow(counter,prefix,vis) - if verboseflag==True: + if divmod(10 * trail / abs(steps), 1)[1] == 0: + if counter < 50: + tooslow(counter, prefix, vis) + if verboseflag == True: showtooslow() break - now=datetime.now() - if verboseflag==True: - print(now.strftime("%d/%m/%Y %H:%M:%S")," Report: done",trail,"/",abs(steps)) + now = datetime.now() + if verboseflag == True: + print( + now.strftime("%d/%m/%Y %H:%M:%S"), + " Report: done", + trail, + "/", + abs(steps), + ) # if mode==0: # rho2=Random2FS(d1) - if mode==2: - rho2=RandomBS(d1,d2) - if mode==1: - rho2=RandomdFS(d1,d2) - if mode==3: - rho2=Random3P(d1,swaps,trail%3) - if mode==4: - rho2=Random4P(d1,swaps,trail%7) - if not(mode in range(1,5)): - if verboseflag==True: - print("Mode ",mode, "does not exist!") + if mode == 2: + rho2 = RandomBS(d1, d2) + if mode == 1: + rho2 = RandomdFS(d1, d2) + if mode == 3: + rho2 = Random3P(d1, swaps, trail % 3) + if mode == 4: + rho2 = Random4P(d1, swaps, trail % 7) + if not (mode in range(1, 5)): + if verboseflag == True: + print("Mode ", mode, "does not exist!") DisplayHelp() break - if Product(rho2,rho3)>dd1: + if Product(rho2, rho3) > dd1: # if mode==0: # rho2=Optimize2FS(rho2, rho3, d1) - if mode==2: - rho2=OptimizeBS(rho2, rho3, d1,d2) - if mode==1: - rho2=OptimizedFS(rho2, rho3, d1,d2) - if mode==3: - rho2=Optimized3P(rho2, swaps, rho3, d1,trail%3) - if mode==4: - rho2=Optimized4P(rho2, rho3,swaps,d1,trail%7) - if realflag==True: - rho2=np.real(rho2) - if symflag==True: - rho1=ApplySym(rho1, symlist) - if projflag==True: - rho1=Rotate(rho1, proj1) - rho1=rho1/np.trace(rho1) - aa3=Product(rho2,rho2) - aa2=2*Product(rho,rho2) - aa5=2*Product(rho1,rho2) -# bb1=aa1-aa2+aa3 - bb2=-aa4+aa2+aa5-2*aa3 - bb3=aa6-aa5+aa3 - cc1=-bb2/(2*bb3) -# cc2=-bb2*bb2/(4*bb3)+bb1 - if 0<=cc1 and cc1<=1: - rho1=cc1*rho1+(1-cc1)*rho2 - if symflag==True and counter%50==0: - rho1=ApplySym(rho1, symlist) - counter=counter+1 - if counter%2==0 and verboseflag==True: - marker=counter%50 - print(marker,end=" ") - if marker==0: + if mode == 2: + rho2 = OptimizeBS(rho2, rho3, d1, d2) + if mode == 1: + rho2 = OptimizedFS(rho2, rho3, d1, d2) + if mode == 3: + rho2 = Optimized3P(rho2, swaps, rho3, d1, trail % 3) + if mode == 4: + rho2 = Optimized4P(rho2, rho3, swaps, d1, trail % 7) + if realflag == True: + rho2 = np.real(rho2) + if symflag == True: + rho1 = ApplySym(rho1, symlist) + if projflag == True: + rho1 = Rotate(rho1, proj1) + rho1 = rho1 / np.trace(rho1) + aa3 = Product(rho2, rho2) + aa2 = 2 * Product(rho, rho2) + aa5 = 2 * Product(rho1, rho2) + # bb1=aa1-aa2+aa3 + bb2 = -aa4 + aa2 + aa5 - 2 * aa3 + bb3 = aa6 - aa5 + aa3 + cc1 = -bb2 / (2 * bb3) + # cc2=-bb2*bb2/(4*bb3)+bb1 + if 0 <= cc1 and cc1 <= 1: + rho1 = cc1 * rho1 + (1 - cc1) * rho2 + if symflag == True and counter % 50 == 0: + rho1 = ApplySym(rho1, symlist) + counter = counter + 1 + if counter % 2 == 0 and verboseflag == True: + marker = counter % 50 + print(marker, end=" ") + if marker == 0: print("") # if marker in [2,4,6,8]: # # print("\b",end="") @@ -779,86 +957,151 @@ def Gilbert(mode,prefix,vis,rho,steps,corrs,d1,d2,verboseflag): # # print("\b",end="") # # print("\b",end="") # print(marker,end=" ") - rho3=rho-rho1 - aa4=2*Product(rho,rho1) - aa6=Product(rho1,rho1) - dd1=aa4/2-aa6 - flag=1 - if 0>cc1 or cc1>1: - flag=0 - if counter % 50==0 and flag==1: - if verboseflag==True: - now=datetime.now() - print(now.strftime("%H:%M:%S: "),"Trails:",trail," Corrections:",counter,"D^2:",Product(rho3,rho3)) - ll.append([trail,counter,Product(rho3, rho3)]) -# scipy.io.mmwrite("".join([prefix,"_out_",str(vis),".mtx"]),rho1) - writemtx("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"]),rho1,2) -# scipy.io.mmwrite("".join([prefix,"_list_",str(vis),".mtx"]),ll) - writemtx("".join([prefix,"_list_",str(mode),"_",str(d1),"_",str(vis),".mtx"]),ll,1) - lastcorr=currentcorr - currentcorr=trail - return(ll) - - -def invert(c,a): - return(1/(c-a)) + rho3 = rho - rho1 + aa4 = 2 * Product(rho, rho1) + aa6 = Product(rho1, rho1) + dd1 = aa4 / 2 - aa6 + flag = 1 + if 0 > cc1 or cc1 > 1: + flag = 0 + if counter % 50 == 0 and flag == 1: + if verboseflag == True: + now = datetime.now() + print( + now.strftime("%H:%M:%S: "), + "Trails:", + trail, + " Corrections:", + counter, + "D^2:", + Product(rho3, rho3), + ) + ll.append([trail, counter, Product(rho3, rho3)]) + # scipy.io.mmwrite("".join([prefix,"_out_",str(vis),".mtx"]),rho1) + writemtx( + "".join( + [ + prefix, + "_out_", + str(mode), + "_", + str(d1), + "_", + str(vis), + ".mtx", + ] + ), + rho1, + 2, + ) + # scipy.io.mmwrite("".join([prefix,"_list_",str(vis),".mtx"]),ll) + writemtx( + "".join( + [ + prefix, + "_list_", + str(mode), + "_", + str(d1), + "_", + str(vis), + ".mtx", + ] + ), + ll, + 1, + ) + lastcorr = currentcorr + currentcorr = trail + return ll + + +def invert(c, a): + return 1 / (c - a) + def mean(l): - return(sum(l)/len(l)) + return sum(l) / len(l) + + +def R(l, a): + ll1 = list(map(lambda x1: invert(x1, a), l)) + return ( + mean(list(map(lambda x1, x2: x1 * x2, ll1, list(range(len(l)))))) + - mean(ll1) * mean(list(range(len(l)))) + ) / math.sqrt( + (mean(list(map(lambda x: x**2, ll1))) - mean(ll1) ** 2) + * ( + mean(list(map(lambda x: x**2, list(range(len(l)))))) + - mean(list(range(len(l)))) ** 2 + ) + ) -def R(l,a): - ll1=list(map(lambda x1: invert(x1,a),l)) - return(mean(list(map(lambda x1,x2:x1*x2, ll1,list(range(len(l))))))-mean(ll1)*mean(list(range(len(l)))))/math.sqrt((mean(list(map(lambda x : x**2,ll1)))-mean(ll1)**2)*(mean(list(map(lambda x:x**2,list(range(len(l))))))-mean(list(range(len(l))))**2)) -def listshift(l1,a1): - return(list(map(lambda x:x-a1,l1))) +def listshift(l1, a1): + return list(map(lambda x: x - a1, l1)) -def cov(l1,l2): - return(mean(list(map(lambda x1,x2:x1*x2,listshift(l1,mean(l1)),listshift(l2,mean(l2)))))) -def trend(l1,l2): - l1a=list(map(lambda x: math.log(x), l1)) - l2a=list(map(lambda x: math.log(x), l2)) - return(cov(l1a,l2a)/cov(l1a,l1a)) +def cov(l1, l2): + return mean( + list( + map( + lambda x1, x2: x1 * x2, listshift(l1, mean(l1)), listshift(l2, mean(l2)) + ) + ) + ) + + +def trend(l1, l2): + l1a = list(map(lambda x: math.log(x), l1)) + l2a = list(map(lambda x: math.log(x), l2)) + return cov(l1a, l2a) / cov(l1a, l1a) + + +def offset(l1, l2): + l1a = list(map(lambda x: math.log(x), l1)) + l2a = list(map(lambda x: math.log(x), l2)) + return mean(l2a) - mean(l1a) * trend(l1, l2) -def offset(l1,l2): - l1a=list(map(lambda x: math.log(x), l1)) - l2a=list(map(lambda x: math.log(x), l2)) - return(mean(l2a)-mean(l1a)*trend(l1,l2)) def findmaximum(ll): - list1=list(map(lambda x: x[2],ll)) - list2=[] - for j1 in range(int(len(list1)/2),len(list1)): + list1 = list(map(lambda x: x[2], ll)) + list2 = [] + for j1 in range(int(len(list1) / 2), len(list1)): list2.append(list1[j1]) - aaa1=list2[len(list2)-1]-.000001 - step1=aaa1/10000 - while R(list2,aaa1-step1)>R(list2,aaa1) and aaa1>0: - aaa1=aaa1-step1 - return(aaa1) - -def makeshortreport(prefix, ll,mode,d1,vis): - ll10=list(map(lambda x: x[0],ll)) - ll11=list(map(lambda x: x[1],ll)) - kk=findmaximum(ll) - ll12=[] - for j1 in range(int(2*len(ll)/3),len(ll)): + aaa1 = list2[len(list2) - 1] - 0.000001 + step1 = aaa1 / 10000 + while R(list2, aaa1 - step1) > R(list2, aaa1) and aaa1 > 0: + aaa1 = aaa1 - step1 + return aaa1 + + +def makeshortreport(prefix, ll, mode, d1, vis): + ll10 = list(map(lambda x: x[0], ll)) + ll11 = list(map(lambda x: x[1], ll)) + kk = findmaximum(ll) + ll12 = [] + for j1 in range(int(2 * len(ll) / 3), len(ll)): ll12.append(ll[j1][2]) - with open("".join([prefix,"_report_",str(mode),"_",str(d1),"_",str(vis),".txt"]),'w') as file: + with open( + "".join([prefix, "_report_", str(mode), "_", str(d1), "_", str(vis), ".txt"]), + "w", + ) as file: file.write("Basing on decay, the squared HS distance is estimsated to be ") file.write(str(kk)) file.write(" (R=") - file.write(str(R(ll12,kk))) + file.write(str(R(ll12, kk))) file.write(")\n") file.write("The dependence between corrs and trail is approximately:\n") file.write("corr=trail^") - file.write(str(trend(ll10,ll11))) + file.write(str(trend(ll10, ll11))) file.write("*") - file.write(str(math.exp(offset(ll10,ll11)))) + file.write(str(math.exp(offset(ll10, ll11)))) file.write("\n-----------------\n") file.close() -def makelongreport(prefix,mode,vis,swaps,d1,d2,ll,verboseflag): + +def makelongreport(prefix, mode, vis, swaps, d1, d2, ll, verboseflag): # optw=OptimizeW(prefix, mode, vis, swaps, d1, d2,verboseflag) # wdist0=WitnessDist(prefix, vis, optw,verboseflag) # with open("".join([prefix,"_report_",str(vis),".txt"]),'a') as file: @@ -868,153 +1111,194 @@ def makelongreport(prefix,mode,vis,swaps,d1,d2,ll,verboseflag): # file.write("The squared distance based on entanglement witness is ") # file.write(str(wdist0)) # file.close() - rhoa=readmtx("".join([prefix,"_in.mtx"])) -# rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob=readmtx("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"])) - rhoa=vis*rhoa+(1-vis)*IdMatrix(len(rhoa))/len(rhoa) - witness=rhoa-rhob - writemtx("".join([prefix,"_witness_",str(mode),"_",str(d1),"_",str(vis),".mtx"]),witness,2) - - -def OptimizeW(prefix, mode,vis, swaps,d1,d2,verboseflag): - l=-1 -# rhoa=scipy.io.mmread("_".join([prefix,"in.mtx"])) - rhoa=readmtx("_".join([prefix,"in.mtx"])) - rhob=Initrho1(prefix, rhoa, vis) - witness=rhoa-rhob + rhoa = readmtx("".join([prefix, "_in.mtx"])) + # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) + rhob = readmtx( + "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ) + rhoa = vis * rhoa + (1 - vis) * IdMatrix(len(rhoa)) / len(rhoa) + witness = rhoa - rhob + writemtx( + "".join([prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]), + witness, + 2, + ) + + +def OptimizeW(prefix, mode, vis, swaps, d1, d2, verboseflag): + l = -1 + # rhoa=scipy.io.mmread("_".join([prefix,"in.mtx"])) + rhoa = readmtx("_".join([prefix, "in.mtx"])) + rhob = Initrho1(prefix, rhoa, vis) + witness = rhoa - rhob # zasieg=1000*d1 - if mode==2: - zasieg=1500 - if mode==1: - zasieg=1500 - if mode==3: - zasieg=1500 - if mode==4: - zasieg=1500 - if verboseflag==True: - print("Optimizing the potential witness operator. Number of trails:",zasieg) + if mode == 2: + zasieg = 1500 + if mode == 1: + zasieg = 1500 + if mode == 3: + zasieg = 1500 + if mode == 4: + zasieg = 1500 + if verboseflag == True: + print("Optimizing the potential witness operator. Number of trails:", zasieg) for owi1 in range(zasieg): # if mode==0: # w1=Random2FS(d1) # l.append(Optimize2FS(w1,witness, d1)) - if owi1%100==0 and verboseflag: - print("trail:",owi1) - if mode==2: - w1=RandomBS(d1,d2) - rho2a=OptimizeBS(w1,witness, d1,d2) - l1=Product(rho2a,witness) - if l1>l: - l=l1 - if mode==1: - w1=RandomdFS(d1,d2) - rho2a=OptimizedFS(w1,witness, d1,d2) - l1=Product(rho2a,witness) - if l1>l : - l=l1 - if mode==3: + if owi1 % 100 == 0 and verboseflag: + print("trail:", owi1) + if mode == 2: + w1 = RandomBS(d1, d2) + rho2a = OptimizeBS(w1, witness, d1, d2) + l1 = Product(rho2a, witness) + if l1 > l: + l = l1 + if mode == 1: + w1 = RandomdFS(d1, d2) + rho2a = OptimizedFS(w1, witness, d1, d2) + l1 = Product(rho2a, witness) + if l1 > l: + l = l1 + if mode == 3: for owi2 in range(3): - w1=Random3P(d1,swaps[0],owi2) - rho2a=Optimize2FS(w1,witness, d1) - l1=Product(rho2a,witness) - if l1>l: - l=l1 - if mode==4: + w1 = Random3P(d1, swaps[0], owi2) + rho2a = Optimize2FS(w1, witness, d1) + l1 = Product(rho2a, witness) + if l1 > l: + l = l1 + if mode == 4: for owi2 in range(7): - w1=Random4P(d1,swaps[0],swaps[1],swaps[2],swaps[3],owi2) - rho2a=Optimize2FS(w1,witness, d1) - l1=Product(rho2a,witness) - if l1>l: - l=l1 - return(l) - -def WitnessDist(prefix,vis,sepmax,verboseflag): -# rhoa=scipy.io.mmread("".join([prefix,"_in.mtx"])) - rhoa=readmtx("".join([prefix,"_in.mtx"])) -# rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob=readmtx("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"])) - rhoa=vis*rhoa+(1-vis)*IdMatrix(len(rhoa))/len(rhoa) - witness=rhoa-rhob - wdist=(Product(witness,rhoa)-sepmax)/math.sqrt(Product(witness,witness)) - if wdist<0: - if verboseflag==True: + w1 = Random4P(d1, swaps[0], swaps[1], swaps[2], swaps[3], owi2) + rho2a = Optimize2FS(w1, witness, d1) + l1 = Product(rho2a, witness) + if l1 > l: + l = l1 + return l + + +def WitnessDist(prefix, vis, sepmax, verboseflag): + # rhoa=scipy.io.mmread("".join([prefix,"_in.mtx"])) + rhoa = readmtx("".join([prefix, "_in.mtx"])) + # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) + rhob = readmtx( + "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) + ) + rhoa = vis * rhoa + (1 - vis) * IdMatrix(len(rhoa)) / len(rhoa) + witness = rhoa - rhob + wdist = (Product(witness, rhoa) - sepmax) / math.sqrt(Product(witness, witness)) + if wdist < 0: + if verboseflag == True: print("No entanglement witness found.") else: - if verboseflag==True: - print("Witness-based estimated squared distance:", wdist**2," (VERIFY!!!)") -# scipy.io.mmwrite("".join([prefix,"_witness_",str(vis),".mtx"]),witness,"".join(["Estimated sqared distance:",str(wdist**2)])) - writemtx("".join([prefix,"_witness_",str(mode),"_",str(d1),"_",str(vis),".mtx"]),witness,2) - return(wdist**2) - + if verboseflag == True: + print( + "Witness-based estimated squared distance:", wdist**2, " (VERIFY!!!)" + ) + # scipy.io.mmwrite("".join([prefix,"_witness_",str(vis),".mtx"]),witness,"".join(["Estimated sqared distance:",str(wdist**2)])) + writemtx( + "".join( + [prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"] + ), + witness, + 2, + ) + return wdist**2 + + def DetectDim0(mode, totaldim, verboseflag): - primes=[2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, 1993, 1997, 1999] - ddflag=False - if mode==1: + primes = PRIMES + ddflag = False + if mode == 1: for pr in primes: - if math.log(totaldim,pr)==int(math.log(totaldim,pr)): - if verboseflag==True: - print("Determined size: ",pr," number of subsystems:", int(math.log(totaldim,pr))) - return([pr,int(math.log(totaldim,pr))]) - ddflag=True + if math.log(totaldim, pr) == int(math.log(totaldim, pr)): + if verboseflag == True: + print( + "Determined size: ", + pr, + " number of subsystems:", + int(math.log(totaldim, pr)), + ) + return [pr, int(math.log(totaldim, pr))] + ddflag = True break - elif mode==2: - if math.sqrt(totaldim)==int(math.sqrt(totaldim)): - pr=int(math.sqrt(totaldim)) - if verboseflag==True: - print("Determined sizes of subsytems: ",pr, int(totaldim/pr)) - return([int(math.sqrt(totaldim)),int(math.sqrt(totaldim))]) - ddflag=True + elif mode == 2: + if math.sqrt(totaldim) == int(math.sqrt(totaldim)): + pr = int(math.sqrt(totaldim)) + if verboseflag == True: + print("Determined sizes of subsytems: ", pr, int(totaldim / pr)) + return [int(math.sqrt(totaldim)), int(math.sqrt(totaldim))] + ddflag = True else: for pr in primes: - if totaldim%pr==0: - if verboseflag==True: - print("Determined sizes of subsytems: ",pr, int(totaldim/pr)) - return([pr,int(totaldim/pr)]) - ddflag=True + if totaldim % pr == 0: + if verboseflag == True: + print("Determined sizes of subsytems: ", pr, int(totaldim / pr)) + return [pr, int(totaldim / pr)] + ddflag = True break - elif mode==3: - if totaldim**(1./3)==int(totaldim**(1./3)): - if verboseflag==True: - print("Determined size: ",int(totaldim**(1./3))," number of subsystems:", 3) - return([int(totaldim**(1./3)),3]) - ddflag=True - elif mode==4: - if totaldim**(1./4)==int(totaldim**(1./4)): - if verboseflag==True: - print("Determined size: ",int(totaldim**(1./4))," number of subsystems:", 4) - return([int(totaldim**(1./4)),4]) - ddflag=True - if ddflag==False: - return([0,0]) - -def DetectDim1(mode,totdim,d1,verboseflag): - ddflag=False - if mode==1: - if math.log(totdim,d1)==int(math.log(totdim,d1)): - ddflag==True - if verboseflag==True: - print("Determined size: ",d1," number of subsystems:", int(math.log(totdim,d1))) - return(int(math.log(totdim,d1))) - elif mode==2: - if totdim/d1==int(totdim/d1): - ddflag==True - if verboseflag==True: - print("Determined sizes", d1,", ",int(totdim/d1)) - return(int(totdim/d1)) - elif mode==3: - if d1**3==totdim: - ddflag==True - return(3) - elif mode==4: - if d1**4==totdim: - ddflag==True - return(4) - if ddflag==False: - return(0) - - + elif mode == 3: + if totaldim ** (1.0 / 3) == int(totaldim ** (1.0 / 3)): + if verboseflag == True: + print( + "Determined size: ", + int(totaldim ** (1.0 / 3)), + " number of subsystems:", + 3, + ) + return [int(totaldim ** (1.0 / 3)), 3] + ddflag = True + elif mode == 4: + if totaldim ** (1.0 / 4) == int(totaldim ** (1.0 / 4)): + if verboseflag == True: + print( + "Determined size: ", + int(totaldim ** (1.0 / 4)), + " number of subsystems:", + 4, + ) + return [int(totaldim ** (1.0 / 4)), 4] + ddflag = True + if ddflag == False: + return [0, 0] + + +def DetectDim1(mode, totdim, d1, verboseflag): + ddflag = False + if mode == 1: + if math.log(totdim, d1) == int(math.log(totdim, d1)): + ddflag == True + if verboseflag == True: + print( + "Determined size: ", + d1, + " number of subsystems:", + int(math.log(totdim, d1)), + ) + return int(math.log(totdim, d1)) + elif mode == 2: + if totdim / d1 == int(totdim / d1): + ddflag == True + if verboseflag == True: + print("Determined sizes", d1, ", ", int(totdim / d1)) + return int(totdim / d1) + elif mode == 3: + if d1**3 == totdim: + ddflag == True + return 3 + elif mode == 4: + if d1**4 == totdim: + ddflag == True + return 4 + if ddflag == False: + return 0 + + def DisplayHelp(): print("CSSFinder mode verbose prefix vis steps corrs d1") - print("mode=0: full separability of an n-qubit state(d1 optional and can be arbitrary)") + print( + "mode=0: full separability of an n-qubit state(d1 optional and can be arbitrary)" + ) print("mode=1: full separability of an n-quDit state") print("mode=2: separability of a bipirtite state") print("mode=3: genuine 3-partite entaglement of a 3-quDit state") @@ -1022,96 +1306,148 @@ def DisplayHelp(): print("verbose=0: supress on-screen ouptut") print("verbose=1: show on-screen messages and reports") print("prefix: prefix of all used prefixs") - print("vis: visibility against white noise. Between 0 and 1. To be used when the algorithm is stuck") - print("steps: number of attemps to correct the closest separable state. A negative number adds its value to pre-existing list of results") + print( + "vis: visibility against white noise. Between 0 and 1. To be used when the algorithm is stuck" + ) + print( + "steps: number of attemps to correct the closest separable state. A negative number adds its value to pre-existing list of results" + ) print("steps are rounded down to a multiple of 10") - print("corrs: the maximal number of corrections to the closest separable state. A negative number adds its value to pre-existing list of results.") + print( + "corrs: the maximal number of corrections to the closest separable state. A negative number adds its value to pre-existing list of results." + ) print("corrs are rounded down to a multiple of 50") - print("d1: the dimenssion of the first subsystem. Dimension of the other subsystem or the number of parties is deduced from the dimension of the input state.") + print( + "d1: the dimenssion of the first subsystem. Dimension of the other subsystem or the number of parties is deduced from the dimension of the input state." + ) print("Input:") print("prefix_in.mtx: the input state in MTX format") - print("prefix_sym_0_0.mtx,prefix_sym_0_1.mtx,...: symmetry unitaries applied to the output state in MTX format. The first number is the symmetry label, the second is the manifold. Optional") - print("prefix_proj.mtx,prefix_sym_0_1.mtx,...: projectionsapplied to the output state in MTX format. Optional") + print( + "prefix_sym_0_0.mtx,prefix_sym_0_1.mtx,...: symmetry unitaries applied to the output state in MTX format. The first number is the symmetry label, the second is the manifold. Optional" + ) + print( + "prefix_proj.mtx,prefix_sym_0_1.mtx,...: projectionsapplied to the output state in MTX format. Optional" + ) print("Output:") - print("prefix_mode_d1_out_vis.mtx: final sepa rable state (can be used as an initial separable state)") - print("prefix_mode_d1_list_vis.mtx: number of steps, corrections, and the squared HS distance every 50 corrections") + print( + "prefix_mode_d1_out_vis.mtx: final sepa rable state (can be used as an initial separable state)" + ) + print( + "prefix_mode_d1_list_vis.mtx: number of steps, corrections, and the squared HS distance every 50 corrections" + ) print("If these files exist, the program will resume from the last record") print("prefix_report_mode_d1_vis.txt: The report file.") -# print("prefix_witness_mode_d1_vis.txt: entanglement witness candidate. Consult [Quantum Reports 2, 49].") - print("prefix_abort.txt: The error message if the algorithm was extremally slow (for some highly entangled states).") -#Display the Logo + # print("prefix_witness_mode_d1_vis.txt: entanglement witness candidate. Consult [Quantum Reports 2, 49].") + print( + "prefix_abort.txt: The error message if the algorithm was extremally slow (for some highly entangled states)." + ) + + +# Display the Logo def DisplayLogo(): print(" ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗") if True: print("██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗") if True: - print("██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝") + print( + "██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝" + ) print("██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗") print("╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║") print(" ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝") + def main(args): -# argnum=len(sys.argv) -# args=argstring - argnum=len(args) - verboseflag=True -# args=sys.argv - argflag=False - symflag=False - if (argnum==7 or argnum==8)and(int(args[1]) in range(1,5)): - argflag=True - if argflag==False: - DisplayHelp() - else: - report=int(args[2]) - if report==0: - verboseflag=False - if verboseflag==True: - DisplayLogo() - correctdimflag=True - mode=int(args[1]) - prefix=args[3] - vis=float(args[4]) - rho=Initrho0(prefix) - totdim=len(rho) - if argnum==7: - [d1,d2]=DetectDim0(mode, totdim,verboseflag) - elif argnum==8: - d1=int(args[7]) - d2=DetectDim1(mode, totdim,d1,verboseflag) - if d2==0: - correctdimflag==False - wrongdim(prefix, mode) - else: - rho=vis*rho+(1-vis)*IdMatrix(totdim)/totdim - rho1=np.zeros((totdim,totdim)) - steps=int(args[5]) - if steps==0: - steps=-30000000 - corrs=int(args[6]) - if corrs==0: - if exists("".join([prefix,"_list_",str(mode),"_",str(d1),"_",str(vis),".mtx"])) and exists("".join([prefix,"_out_",str(mode),"_",str(d1),"_",str(vis),".mtx"])): - corrs=-500 - else: - coors=2500 - if correctdimflag==True: - ll1=Gilbert(mode, prefix, vis, rho, steps , corrs, d1,d2,verboseflag) - if len(ll1)<10: - if verboseflag==True: - print("The report can be generated only if more than 500 corrections were performed.") + # argnum=len(sys.argv) + # args=argstring + argnum = len(args) + verboseflag = True + # args=sys.argv + argflag = False + symflag = False + if (argnum == 7 or argnum == 8) and (int(args[1]) in range(1, 5)): + argflag = True + if argflag == False: + DisplayHelp() + else: + report = int(args[2]) + if report == 0: + verboseflag = False + if verboseflag == True: + DisplayLogo() + correctdimflag = True + mode = int(args[1]) + prefix = args[3] + vis = float(args[4]) + rho = Initrho0(prefix) + totdim = len(rho) + if argnum == 7: + [d1, d2] = DetectDim0(mode, totdim, verboseflag) + elif argnum == 8: + d1 = int(args[7]) + d2 = DetectDim1(mode, totdim, d1, verboseflag) + if d2 == 0: + correctdimflag == False + wrongdim(prefix, mode) + else: + rho = vis * rho + (1 - vis) * IdMatrix(totdim) / totdim + rho1 = np.zeros((totdim, totdim)) + steps = int(args[5]) + if steps == 0: + steps = -30000000 + corrs = int(args[6]) + if corrs == 0: + if exists( + "".join( + [ + prefix, + "_list_", + str(mode), + "_", + str(d1), + "_", + str(vis), + ".mtx", + ] + ) + ) and exists( + "".join( + [ + prefix, + "_out_", + str(mode), + "_", + str(d1), + "_", + str(vis), + ".mtx", + ] + ) + ): + corrs = -500 else: - makeshortreport(prefix, ll1,mode,d1,vis) - if mode==3: - swaps=[swap123(d1)] - elif mode==4: - swaps=[swap124(d1),swap134(d1),swap234(d1),swap344(d1)] - else: - swaps=[] - makeshortreport(prefix, ll1,mode,d1,vis) -# makelongreport(prefix, mode, vis, swaps, d1, d2, ll1,verboseflag) + coors = 2500 + if correctdimflag == True: + ll1 = Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag) + if len(ll1) < 10: + if verboseflag == True: + print( + "The report can be generated only if more than 500 corrections were performed." + ) else: - print("Input state dimensionality incompatiblie with declared mode.") - DisplayHelp() + makeshortreport(prefix, ll1, mode, d1, vis) + if mode == 3: + swaps = [swap123(d1)] + elif mode == 4: + swaps = [swap124(d1), swap134(d1), swap234(d1), swap344(d1)] + else: + swaps = [] + makeshortreport(prefix, ll1, mode, d1, vis) + # makelongreport(prefix, mode, vis, swaps, d1, d2, ll1,verboseflag) + else: + print("Input state dimensionality incompatiblie with declared mode.") + DisplayHelp() + -if __name__ == '__main__': - main(sys.argv) \ No newline at end of file +if __name__ == "__main__": + main(sys.argv) From a01a44673df5d86d0f65fa2b11a12a5cb6861be7 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 00:28:56 +0100 Subject: [PATCH 004/227] Create MtxFn and MtxIO namespaces, extract PRIMES to global constant --- CSSFinder.py | 782 +++++++++++++++++++++++++++------------------------ 1 file changed, 413 insertions(+), 369 deletions(-) diff --git a/CSSFinder.py b/CSSFinder.py index ce1eb05..29403ec 100644 --- a/CSSFinder.py +++ b/CSSFinder.py @@ -4,9 +4,15 @@ ver 1.1.0 @author: wiesn """ +from __future__ import annotations +from io import StringIO +from pathlib import Path + import sys +from typing import Literal, TypeAlias, TypeVar import numpy as np import math +from numpy.typing import NDArray # import scipy.io from datetime import datetime @@ -43,261 +49,295 @@ ) # fmt: on +DTYPE: TypeAlias = np.complex64 + + +class MtxFn: + """Matrix functions.""" + + @staticmethod + def outer(p_1: NDArray[DTYPE], p_2: NDArray[DTYPE]) -> NDArray[DTYPE]: + """Outer product of two vectors.""" + return np.outer(np.array(p_1), np.array(p_2)).flatten() + + @staticmethod + def normalize(p: NDArray[DTYPE]) -> NDArray[DTYPE]: + """Normalization of a vector.""" + p_2 = np.dot(p, np.conj(p)) + p_2 = math.sqrt(np.real(p_2)) + return p / p_2 + + @staticmethod + def project(p_1: NDArray[DTYPE]) -> NDArray[DTYPE]: + """Build a projection from a vector.""" + return np.outer(np.array(p_1), np.conj(np.array(p_1))) + + @staticmethod + def product(mtx1: NDArray[DTYPE], mtx2: NDArray[DTYPE]): + """Scalar product of two matrices/""" + k = np.trace(np.matmul(mtx1, mtx2)) + return np.real(k) + + @staticmethod + def generate(size: int | tuple[int, ...]) -> NDArray[np.complex64]: + """Generate a random vector with Haar measure.""" + k_1 = np.random.normal(0, 1, size).astype(np.complex64) + k_2 = np.random.normal(0, 1, size).astype(np.complex64) + k_3 = k_1 + complex(0, 1) * k_2 + return k_3 + + @staticmethod + def ident_mtx(size: int) -> NDArray[np.complex64]: + """Return identity matrix""" + p_1 = np.zeros((int(size), int(size)), dtype=np.complex64) + np.fill_diagonal(p_1, 1) + return p_1 + + @staticmethod + def kronecker(p_1: NDArray[DTYPE], p_2: NDArray[DTYPE]) -> NDArray[DTYPE]: + """Kronecker Product.""" + ddd1 = len(p_1) + ddd2 = len(p_2) + p_3 = np.reshape( + np.swapaxes(np.tensordot(p_1, p_2, 0), 1, 2), + (ddd1 * ddd2, ddd1 * ddd2), + ) + return p_3 + + @staticmethod + def expand2FS( # pylint: disable=invalid-name + p_1: NDArray[DTYPE], n: int, j1: int + ) -> NDArray[DTYPE]: + """Expand an operator to n qubits.""" + return MtxFn.kronecker( + MtxFn.kronecker(MtxFn.ident_mtx(2**j1), p_1), + MtxFn.ident_mtx(2 ** (n - j1 - 1)), + ) -##### -# Matrix Functions: -# Outer product of two vectors -def Outer(p1, p2): - return np.outer(np.array(p1), np.array(p2)).flatten() - - -# Normalization of a vector -def Normalize(p): - p2 = np.dot(p, np.conj(p)) - p2 = math.sqrt(np.real(p2)) - return p / p2 - - -# Build a projection from a vector -def Project(p1): - return np.outer(np.array(p1), np.conj(np.array(p1))) - - -# Scalar product of two matrices -def Product(t1, t2): - k = np.trace(np.matmul(t1, t2)) - return np.real(k) + @staticmethod + def expand_d_FS( # pylint: disable=invalid-name + p_1: NDArray[DTYPE], + d: int, + n: int, + j_1: int, + ) -> NDArray[DTYPE]: + """Expand an operator to n qubits.""" + return MtxFn.kronecker( + MtxFn.kronecker(MtxFn.ident_mtx(int(d**j_1)), p_1), + MtxFn.ident_mtx(int(d ** (n - j_1 - 1))), + ) + @staticmethod + def rotate(rho2: NDArray[DTYPE], U: NDArray[DTYPE]) -> NDArray[DTYPE]: + """Sandwich an operator with a unitary.""" + rho2a = np.matmul(rho2, np.conj(U).T) + rho2a = np.matmul(U, rho2a) + return rho2a -# Generate a random vector with Haar measure -def Generate(d): - k1 = np.random.normal(0, 1, d) - k2 = np.random.normal(0, 1, d) - k3 = k1 + complex(0, 1) * k2 - return k3 +# MTX file read and write +# [1]: 'matrix' 'vector' +# [2]: 'array' 'coordinate' +# [3]: 'integer' 'real' 'complex' 'pattern' +# [4]: 'general' 'symmetric' 'skew-symmetric' 'hermitian -# Identity Matrix -def IdMatrix(d): - p1 = np.zeros((int(d), int(d)), dtype=complex) - for i1 in range(d): - p1[i1, i1] = 1 - return p1 +class MtxIO: + """From and to file matrix serialization.""" -# Kronecker Product -def Kronecker(p1, p2): - ddd1 = len(p1) - ddd2 = len(p2) - p3 = np.reshape( - np.swapaxes(np.tensordot(p1, p2, 0), 1, 2), (ddd1 * ddd2, ddd1 * ddd2) - ) - # p3=np.zeros((ddd1*ddd2,ddd1*ddd2),dtype=complex) - # for i1 in range(ddd1): - # for i2 in range(ddd2): - # for i3 in range(ddd1): - # for i4 in range(ddd2): - # p3[ddd2*i1+i2,ddd2*i3+i4]=p1[i1,i3]*p2[i2,i4] - return p3 + @staticmethod + def get_number( + file: StringIO, vartype: Literal[0] | Literal[1] | Literal[2] + ) -> int | float | complex: + readnum = file.readline() -# Expand an operator to n qubits -def Expand2FS(p1, n, j1): - return Kronecker(Kronecker(IdMatrix(2**j1), p1), IdMatrix(2 ** (n - j1 - 1))) + if vartype == 0: + return int(readnum) + if vartype == 1: + return float(readnum) -# Expand an operator to n quDits -def ExpanddFS(p1, d, n, j1): - return Kronecker( - Kronecker(IdMatrix(int(d**j1)), p1), IdMatrix(int(d ** (n - j1 - 1))) - ) + if vartype == 2: + readnum = readnum.split() + kreadnum = list(map(float, readnum)) + return kreadnum[0] + complex(0, 1) * kreadnum[1] + raise AssertionError() -# sandwich an operator with a unitarry -def Rotate(rho2, U): + @staticmethod + def get_3_numbers( + file: StringIO, vartype: Literal[0] | Literal[1] | Literal[2] + ) -> tuple[int, int, int | float | complex]: - rho2a = np.matmul(rho2, np.conj(U).T) - rho2a = np.matmul(U, rho2a) - return rho2a + readnum = file.readline() + readnum = readnum.split() + if vartype == 0: + return (int(readnum[0]), int(readnum[1]), int(readnum[2])) -# MTX file read and write -# [1]: 'matrix' 'vector' -# [2]: 'array' 'coordinate' -# [3]: 'integer' 'real' 'complex' 'pattern' -# [4]: 'general' 'symmetric' 'skew-symmetric' 'hermitian + if vartype == 1: + return (int(readnum[0]), int(readnum[1]), float(readnum[2])) + if vartype == 2: + return ( + int(readnum[0]), + int(readnum[1]), + float(readnum[2]) + complex(float(readnum[3])), + ) -def getnum(file, vartype): - readnum = file.readline() - if vartype == 0: - return int(readnum) - elif vartype == 1: - return float(readnum) - elif vartype == 2: - readnum = readnum.split() - kreadnum = list(map(float, readnum)) - return kreadnum[0] + complex(0, 1) * kreadnum[1] - - -def get3num(file, vartype): - readnum = file.readline() - readnum = readnum.split - if vartype == 0: - return [int(readnum[0]), int(readnum[1]), int(readnum[2])] - elif vartype == 1: - return [int(readnum[0]), int(readnum[1]), float(readnum[2])] - elif vartype == 2: - return [ - int(readnum[0]), - int(readnum[1]), - float(readnum[2]) + complex(float(readnum[3])), - ] - - -def readmtx(filename): - with open(filename, "r") as file: - line = str(file.readline()) - firstline = line.split() - if firstline[1] == "matrix": - shape = 0 - elif firstline[1] == "vector": - shape = 1 - if firstline[2] == "array": - descr = 0 - elif firstline[2] == "coordinate": - descr = 1 - if firstline[3] == "integer": - vartype = 0 - elif firstline[3] == "real": - vartype = 1 - elif firstline[3] == "complex": - vartype = 2 - if firstline[4] == "general": - symtype = 0 - elif firstline[4] == "symmetric": - symtype = 1 - elif firstline[4] == "skew-symmetric": - symtype = 2 - elif firstline[4] == "hermitian": - symtype = 3 - while line[0] == "%" or len(line) == 1: - line = file.readline() - line = list(map(int, line.split())) - if shape == 0 and descr == 0: - rows = line[0] - cols = line[1] - if vartype == 0: - wynik = np.zeros((rows, cols), dtype=int) - elif vartype == 1: - wynik = np.zeros((rows, cols), dtype=float) - elif vartype == 2: - wynik = np.zeros((rows, cols), dtype=complex) - if symtype == 0: - for i1 in range(cols): - for i2 in range(rows): - wynik[i2][i1] = getnum(file, vartype) - elif symtype == 1 and rows == cols: - for i1 in range(cols): - for i2 in range(i1, rows): - wynik[i2][i1] = getnum(file, vartype) - wynik[i1][i2] = wynik[i2][i1] - elif symtype == 2 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1 + 1, rows): - wynik[i2][i1] = getnum(file, vartype) - wynik[i1][i2] = -wynik[i2][i1] - elif symtype == 3 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1, rows): - wynik[i2][i1] = getnum(file, vartype) - wynik[i1][i2] = np.conj(wynik[i2][i1]) - if shape == 0 and descr == 1: - rows = line[0] - cols = line[1] - nonzeros = line[3] - if vartype == 0: - wynik = np.zeros((cols, rows), dtype=int) - elif vartype == 1: - wynik = np.zeros((cols, rows), dtype=float) - elif vartype == 2: - wynik = np.zeros((cols, rows), dtype=complex) - for i1 in range(nonzeros): - entry = get3num(file, vartype) - wynik[entry[1]][entry[0]] = entry[2] - if symtype == 1 and rows == cols: - for i1 in range(rows): - for i2 in range(i1, cols): - if np.abs(wynik[i1][i2]) != 0: - wynik[i2][i1] = wynik[i1][i2] - else: - wynik[i1][i2] = wynik[i2][i1] - elif symtype == 2 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1 + 1, rows): - if np.abs(wynik[i1][i2]) != 0: - wynik[i2][i1] = -wynik[i1][i2] - else: - wynik[i1][i2] = -wynik[i2][i1] - elif symtype == 3 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1, rows): - if np.abs(wynik[i1][i2]) != 0: - wynik[i2][i1] = np.conj(wynik[i1][i2]) - else: - wynik[i1][i2] = np.conj(wynik[i2][i1]) - file.close() - return wynik - - -def writemtx(filename, lista, vartype): - if vartype == 1: - vartype1 = "real" - elif vartype == 2: - vartype1 = "complex" - elif vartype == 0: - vartype1 = "integer" - with open(filename, "w") as file: - file.write(" ".join(["%%MatrixMarket matrix array", vartype1, "general\n"])) - file.write("%Generated by CSSFinder\n") - file.write(str(len(lista))) - file.write(" ") - file.write(str(len(lista[0]))) - file.write("\n") - for i1 in range(len(lista[0])): - for i2 in range(len(lista)): - if vartype == 2: - file.write(str(np.real(lista[i2][i1]))) - file.write(" ") - file.write(str(np.imag(lista[i2][i1]))) - file.write("\n") - else: - file.write(str(lista[i2][i1])) - file.write("\n") - file.close() + raise AssertionError() + + @staticmethod + def read_mtx(filename: str | Path) -> NDArray[DTYPE]: + """Read matrix data from file.""" + + with open(filename, "r") as file: + line = str(file.readline()) + firstline = line.split() + if firstline[1] == "matrix": + shape = 0 + elif firstline[1] == "vector": + shape = 1 + if firstline[2] == "array": + descr = 0 + elif firstline[2] == "coordinate": + descr = 1 + if firstline[3] == "integer": + vartype = 0 + elif firstline[3] == "real": + vartype = 1 + elif firstline[3] == "complex": + vartype = 2 + if firstline[4] == "general": + symtype = 0 + elif firstline[4] == "symmetric": + symtype = 1 + elif firstline[4] == "skew-symmetric": + symtype = 2 + elif firstline[4] == "hermitian": + symtype = 3 + while line[0] == "%" or len(line) == 1: + line = file.readline() + line = list(map(int, line.split())) + if shape == 0 and descr == 0: + rows = line[0] + cols = line[1] + if vartype == 0: + retval = np.zeros((rows, cols), dtype=int) + elif vartype == 1: + retval = np.zeros((rows, cols), dtype=float) + elif vartype == 2: + retval = np.zeros((rows, cols), dtype=complex) + if symtype == 0: + for i1 in range(cols): + for i2 in range(rows): + retval[i2][i1] = getnum(file, vartype) + elif symtype == 1 and rows == cols: + for i1 in range(cols): + for i2 in range(i1, rows): + retval[i2][i1] = getnum(file, vartype) + retval[i1][i2] = retval[i2][i1] + elif symtype == 2 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1 + 1, rows): + retval[i2][i1] = getnum(file, vartype) + retval[i1][i2] = -retval[i2][i1] + elif symtype == 3 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1, rows): + retval[i2][i1] = getnum(file, vartype) + retval[i1][i2] = np.conj(retval[i2][i1]) + if shape == 0 and descr == 1: + rows = line[0] + cols = line[1] + nonzeros = line[3] + if vartype == 0: + retval = np.zeros((cols, rows), dtype=int) + elif vartype == 1: + retval = np.zeros((cols, rows), dtype=float) + elif vartype == 2: + retval = np.zeros((cols, rows), dtype=complex) + for i1 in range(nonzeros): + entry = MtxIO.get_3_numbers(file, vartype) + retval[entry[1]][entry[0]] = entry[2] + if symtype == 1 and rows == cols: + for i1 in range(rows): + for i2 in range(i1, cols): + if np.abs(retval[i1][i2]) != 0: + retval[i2][i1] = retval[i1][i2] + else: + retval[i1][i2] = retval[i2][i1] + elif symtype == 2 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1 + 1, rows): + if np.abs(retval[i1][i2]) != 0: + retval[i2][i1] = -retval[i1][i2] + else: + retval[i1][i2] = -retval[i2][i1] + elif symtype == 3 and rows == cols: + for i1 in range(0, cols): + for i2 in range(i1, rows): + if np.abs(retval[i1][i2]) != 0: + retval[i2][i1] = np.conj(retval[i1][i2]) + else: + retval[i1][i2] = np.conj(retval[i2][i1]) + + return retval + + @staticmethod + def write_mtx(filename, lista, vartype): + if vartype == 1: + vartype1 = "real" + elif vartype == 2: + vartype1 = "complex" + elif vartype == 0: + vartype1 = "integer" + with open(filename, "w") as file: + file.write(" ".join(["%%MatrixMarket matrix array", vartype1, "general\n"])) + file.write("%Generated by CSSFinder\n") + file.write(str(len(lista))) + file.write(" ") + file.write(str(len(lista[0]))) + file.write("\n") + for i1 in range(len(lista[0])): + for i2 in range(len(lista)): + if vartype == 2: + file.write(str(np.real(lista[i2][i1]))) + file.write(" ") + file.write(str(np.imag(lista[i2][i1]))) + file.write("\n") + else: + file.write(str(lista[i2][i1])) + file.write("\n") + file.close() # Random states: # n qubit state def Random2FS(n): - q1 = Normalize(Generate(2)) + q1 = MtxFn.normalize(MtxFn.generate(2)) if n > 1: for l1 in range(n - 1): - q1 = Outer(q1, Normalize(Generate(2))) - return Project(q1) + q1 = MtxFn.outer(q1, MtxFn.normalize(MtxFn.generate(2))) + return MtxFn.project(q1) # n quDit state def RandomdFS(d, n): - q1 = Normalize(Generate(d)) + q1 = MtxFn.normalize(MtxFn.generate(d)) for l1 in range(n - 1): - q1 = Outer(q1, Normalize(Generate(d))) - return Project(q1) + q1 = Outer(q1, MtxFn.normalize(MtxFn.generate(d))) + return MtxFn.project(q1) # biseparable state def RandomBS(d1, d2): - return Project(Outer(Normalize(Generate(d1)), Normalize(Generate(d2)))) + return MtxFn.project( + MtxFn.outer( + MtxFn.normalize(MtxFn.generate(d1)), MtxFn.normalize(MtxFn.generate(d2)) + ) + ) # biseparable state with three quDits @@ -307,7 +347,7 @@ def Random3P(d1, swaps, i): return RandomBS(d1, d1 * d1) if i == 1: # AbC - return Rotate(RandomBS(d1, d1 * d1), swaps[0]) + return MtxFn.rotate(RandomBS(d1, d1 * d1), swaps[0]) if i == 2: # ABc return RandomBS(d1 * d1, d1) @@ -320,10 +360,10 @@ def Random4P(d1, swaps, i): return RandomBS(d1, d1 * d1 * d1) if i == 1: # AbCD - return Rotate(RandomBS(d1, d1 * d1 * d1), swaps[0]) + return MtxFn.rotate(RandomBS(d1, d1 * d1 * d1), swaps[0]) if i == 2: # ABcD - return Rotate(RandomBS(d1 * d1 * d1, d1), swaps[3]) + return MtxFn.rotate(RandomBS(d1 * d1 * d1, d1), swaps[3]) if i == 3: # ABCd return RandomBS(d1 * d1 * d1, d1) @@ -332,10 +372,10 @@ def Random4P(d1, swaps, i): return RandomBS(d1 * d1, d1 * d1) if i == 5: # aBcD - return Rotate(RandomBS(d1 * d1, d1 * d1), swaps[2]) + return MtxFn.rotate(RandomBS(d1 * d1, d1 * d1), swaps[2]) if i == 6: # aBCd - return Rotate(RandomBS(d1 * d1, d1 * d1), swaps[1]) + return MtxFn.rotate(RandomBS(d1 * d1, d1 * d1), swaps[1]) # Rendom Unitaries @@ -344,13 +384,13 @@ def RandomUBS(a, d1, d2): if a == 0: rubsp1 = ( math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * Project(Normalize(Generate(d1))) + IdMatrix(d1) - return Kronecker(rubsp1, IdMatrix(int(d2))) + ) * MtxFn.project(MtxFn.normalize(MtxFn.generate(d1))) + MtxFn.ident_mtx(d1) + return MtxFn.kronecker(rubsp1, MtxFn.ident_mtx(int(d2))) if a == 1: rubsp1 = ( math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * Project(Normalize(Generate(d2))) + IdMatrix(d2) - return Kronecker(IdMatrix(int(d1)), rubsp1) + ) * MtxFn.project(MtxFn.normalize(MtxFn.generate(d2))) + MtxFn.ident_mtx(d2) + return MtxFn.kronecker(MtxFn.ident_mtx(int(d1)), rubsp1) # return(Kronecker(IdMatrix(d1),unitatry_group.rvs(d2))) @@ -359,8 +399,8 @@ def RandomU2FS(n, j): # p1=unitary_group.rvs(2) p1 = ( math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * Random2FS(1) + IdMatrix(2) - return Expand2FS(p1, n, j) + ) * Random2FS(1) + MtxFn.ident_mtx(2) + return MtxFn.expand2FS(p1, n, j) # n quDits @@ -368,65 +408,65 @@ def RandomUdFS(d, n, j): # p1=unitary_group.rvs(d) p1 = ( math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * RandomdFS(d, 1) + IdMatrix(d) - return ExpanddFS(p1, d, n, j) + ) * RandomdFS(d, 1) + MtxFn.ident_mtx(d) + return MtxFn.expand_d_FS(p1, d, n, j) # Optimizers # biseparability def OptimizeBS(rho2, rho3, d1, d2): - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for obsj1 in range(5 * d1 * d2): U = RandomUBS(obsj1 % 2, d1, d2) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) return rho2a # 3-partite entanglement def Optimized3P(rho2, swaps, rho3, d1, i1): if i1 == 0: - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**6): U = RandomUBS(j1 % 2, d1, d1 * d1) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 1: - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**6): - U = Rotate(RandomUBS(j1 % 2, d1, d1 * d1), swaps[0]) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + U = MtxFn.rotate(RandomUBS(j1 % 2, d1, d1 * d1), swaps[0]) + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 2: - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**6): U = RandomUBS(j1 % 2, d1 * d1, d1) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) return rho2a @@ -435,127 +475,127 @@ def Optimized3P(rho2, swaps, rho3, d1, i1): def Optimized4P(rho2, rho3, swaps, d1, i1): if i1 == 0: # aBCD - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): U = RandomUBS(j1 % 2, d1, d1**3) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 1: # AbCD - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): - U = Rotate(RandomUBS(j1 % 2, d1, d1 * d1 * d1), swaps[0]) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + U = MtxFn.rotate(RandomUBS(j1 % 2, d1, d1 * d1 * d1), swaps[0]) + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 2: # ABcD - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): - U = Rotate(RandomUBS(j1 % 2, d1**3, d1), swaps[3]) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + U = MtxFn.rotate(RandomUBS(j1 % 2, d1**3, d1), swaps[3]) + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 3: # ABCd - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): U = RandomUBS(j1 % 2, d1**3, d1) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 4: # abCD - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): U = RandomUBS(j1 % 2, d1 * d1, d1 * d1) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 5: # aBcD - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): - U = Rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[2]) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + U = MtxFn.rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[2]) + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) if i1 == 6: # aBCd - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(5 * d1**8): - U = Rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[1]) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + U = MtxFn.rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[1]) + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) return rho2a # n qubits def Optimize2FS(rho2, rho3, n): - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(100 * n): U = RandomU2FS(n, j1 % n) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) return rho2a # n quDits def OptimizedFS(rho2, rho3, ddd1, n): - pp1 = Product(rho2, rho3) + pp1 = MtxFn.product(rho2, rho3) for j1 in range(20 * ddd1 * ddd1 * n): U = RandomUdFS(ddd1, n, j1 % n) - rho2a = Rotate(rho2, U) - if pp1 > Product(rho2a, rho3): + rho2a = MtxFn.rotate(rho2, U) + if pp1 > MtxFn.product(rho2a, rho3): U = U.conj().T - rho2a = Rotate(rho2, U) - while Product(rho2a, rho3) > pp1: + rho2a = MtxFn.rotate(rho2, U) + while MtxFn.product(rho2a, rho3) > pp1: rho2b = rho2a - pp1 = Product(rho2b, rho3) - rho2a = Rotate(rho2a, U) + pp1 = MtxFn.product(rho2b, rho3) + rho2a = MtxFn.rotate(rho2a, U) return rho2a @@ -658,18 +698,18 @@ def swap344(d): # read rho def Initrho0(prefix): # return(scipy.io.mmread("_".join([prefix,"in.mtx"]))) - return readmtx("_".join([prefix, "in.mtx"])) + return MtxIO.read_mtx("_".join([prefix, "in.mtx"])) # read or generate rho1 def Initrho1(prefix, rho, mode, d1, vis): if exists("".join([prefix, "_out_", str(vis), ".mtx"])): # return(scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"]))) - return readmtx("".join([prefix, "_out_", str(vis), ".mtx"])) + return MtxIO.read_mtx("".join([prefix, "_out_", str(vis), ".mtx"])) elif exists( "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ): - return readmtx( + return MtxIO.read_mtx( "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ) else: @@ -745,7 +785,9 @@ def DefineSym(prefix): while exists("".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"])): # symlist2.append(scipy.io.mmread("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"]))) symlist2.append( - readmtx("".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"])) + MtxIO.read_mtx( + "".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"]) + ) ) symj2 = symj2 + 1 symj2 = 0 @@ -759,7 +801,7 @@ def ApplySym(rho, symlist1): asrho0 = rho for asj1 in range(len(symlist1)): for asj2 in range(len(symlist1[asj1])): - asrho0 = asrho0 + Rotate(asrho0, symlist1[asj1][asj2]) + asrho0 = asrho0 + MtxFn.rotate(asrho0, symlist1[asj1][asj2]) asrho0 = asrho0 / np.trace(asrho0) return asrho0 @@ -769,7 +811,7 @@ def DefineProj(projflag, prefix): if exists("_".join([prefix, "proj", ".mtx"])): projflag = True # return(scipy.io.mmread("_".join([prefix,"proj.mtx"]))) - return readmtx("_".join([prefix, "proj.mtx"])) + return MtxIO.read_mtx("_".join([prefix, "proj.mtx"])) else: return [[]] @@ -787,7 +829,7 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): # if symflag==True: # rho1=ApplySym(rho1, symlist) if projflag == True: - rho1 = Rotate(rho1, proj1) + rho1 = MtxFn.rotate(rho1, proj1) lastcorr = 0 currentcorr = 0 ll = [] @@ -798,7 +840,7 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): "".join([prefix, "_out_", str(vis), ".mtx"]) ): # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2 = readmtx("".join([prefix, "_list_", str(vis), ".mtx"])) + ll2 = MtxIO.read_mtx("".join([prefix, "_list_", str(vis), ".mtx"])) trail = int(ll2[len(ll2) - 1][0]) counter = int(ll2[len(ll2) - 1][1]) for i3 in range(len(ll2)): @@ -814,7 +856,7 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ): # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2 = readmtx( + ll2 = MtxIO.read_mtx( "".join([prefix, "_list_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ) trail = int(ll2[len(ll2) - 1][0]) @@ -853,11 +895,11 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): print( "Input state strictly real. Imaginary parts of the output state will be discarded" ) - aa1 = Product(rho, rho) - aa4 = 2 * Product(rho, rho1) - aa6 = Product(rho1, rho1) + aa1 = MtxFn.product(rho, rho) + aa4 = 2 * MtxFn.product(rho, rho1) + aa6 = MtxFn.product(rho1, rho1) rho3 = rho - rho1 - dd1 = Product(rho1, rho3) + dd1 = MtxFn.product(rho1, rho3) if mode == 3: swaps = [swap123(d1)] elif mode == 4: @@ -908,7 +950,7 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): print("Mode ", mode, "does not exist!") DisplayHelp() break - if Product(rho2, rho3) > dd1: + if MtxFn.product(rho2, rho3) > dd1: # if mode==0: # rho2=Optimize2FS(rho2, rho3, d1) if mode == 2: @@ -924,11 +966,11 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): if symflag == True: rho1 = ApplySym(rho1, symlist) if projflag == True: - rho1 = Rotate(rho1, proj1) + rho1 = MtxFn.rotate(rho1, proj1) rho1 = rho1 / np.trace(rho1) - aa3 = Product(rho2, rho2) - aa2 = 2 * Product(rho, rho2) - aa5 = 2 * Product(rho1, rho2) + aa3 = MtxFn.product(rho2, rho2) + aa2 = 2 * MtxFn.product(rho, rho2) + aa5 = 2 * MtxFn.product(rho1, rho2) # bb1=aa1-aa2+aa3 bb2 = -aa4 + aa2 + aa5 - 2 * aa3 bb3 = aa6 - aa5 + aa3 @@ -958,8 +1000,8 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): # # print("\b",end="") # print(marker,end=" ") rho3 = rho - rho1 - aa4 = 2 * Product(rho, rho1) - aa6 = Product(rho1, rho1) + aa4 = 2 * MtxFn.product(rho, rho1) + aa6 = MtxFn.product(rho1, rho1) dd1 = aa4 / 2 - aa6 flag = 1 if 0 > cc1 or cc1 > 1: @@ -974,11 +1016,11 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): " Corrections:", counter, "D^2:", - Product(rho3, rho3), + MtxFn.product(rho3, rho3), ) - ll.append([trail, counter, Product(rho3, rho3)]) + ll.append([trail, counter, MtxFn.product(rho3, rho3)]) # scipy.io.mmwrite("".join([prefix,"_out_",str(vis),".mtx"]),rho1) - writemtx( + MtxIO.write_mtx( "".join( [ prefix, @@ -995,7 +1037,7 @@ def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): 2, ) # scipy.io.mmwrite("".join([prefix,"_list_",str(vis),".mtx"]),ll) - writemtx( + MtxIO.write_mtx( "".join( [ prefix, @@ -1111,14 +1153,14 @@ def makelongreport(prefix, mode, vis, swaps, d1, d2, ll, verboseflag): # file.write("The squared distance based on entanglement witness is ") # file.write(str(wdist0)) # file.close() - rhoa = readmtx("".join([prefix, "_in.mtx"])) + rhoa = MtxIO.read_mtx("".join([prefix, "_in.mtx"])) # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob = readmtx( + rhob = MtxIO.read_mtx( "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ) - rhoa = vis * rhoa + (1 - vis) * IdMatrix(len(rhoa)) / len(rhoa) + rhoa = vis * rhoa + (1 - vis) * MtxFn.ident_mtx(len(rhoa)) / len(rhoa) witness = rhoa - rhob - writemtx( + MtxIO.write_mtx( "".join([prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]), witness, 2, @@ -1128,7 +1170,7 @@ def makelongreport(prefix, mode, vis, swaps, d1, d2, ll, verboseflag): def OptimizeW(prefix, mode, vis, swaps, d1, d2, verboseflag): l = -1 # rhoa=scipy.io.mmread("_".join([prefix,"in.mtx"])) - rhoa = readmtx("_".join([prefix, "in.mtx"])) + rhoa = MtxIO.read_mtx("_".join([prefix, "in.mtx"])) rhob = Initrho1(prefix, rhoa, vis) witness = rhoa - rhob # zasieg=1000*d1 @@ -1151,27 +1193,27 @@ def OptimizeW(prefix, mode, vis, swaps, d1, d2, verboseflag): if mode == 2: w1 = RandomBS(d1, d2) rho2a = OptimizeBS(w1, witness, d1, d2) - l1 = Product(rho2a, witness) + l1 = MtxFn.product(rho2a, witness) if l1 > l: l = l1 if mode == 1: w1 = RandomdFS(d1, d2) rho2a = OptimizedFS(w1, witness, d1, d2) - l1 = Product(rho2a, witness) + l1 = MtxFn.product(rho2a, witness) if l1 > l: l = l1 if mode == 3: for owi2 in range(3): w1 = Random3P(d1, swaps[0], owi2) rho2a = Optimize2FS(w1, witness, d1) - l1 = Product(rho2a, witness) + l1 = MtxFn.product(rho2a, witness) if l1 > l: l = l1 if mode == 4: for owi2 in range(7): w1 = Random4P(d1, swaps[0], swaps[1], swaps[2], swaps[3], owi2) rho2a = Optimize2FS(w1, witness, d1) - l1 = Product(rho2a, witness) + l1 = MtxFn.product(rho2a, witness) if l1 > l: l = l1 return l @@ -1179,14 +1221,16 @@ def OptimizeW(prefix, mode, vis, swaps, d1, d2, verboseflag): def WitnessDist(prefix, vis, sepmax, verboseflag): # rhoa=scipy.io.mmread("".join([prefix,"_in.mtx"])) - rhoa = readmtx("".join([prefix, "_in.mtx"])) + rhoa = MtxIO.read_mtx("".join([prefix, "_in.mtx"])) # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob = readmtx( + rhob = MtxIO.read_mtx( "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) ) - rhoa = vis * rhoa + (1 - vis) * IdMatrix(len(rhoa)) / len(rhoa) + rhoa = vis * rhoa + (1 - vis) * MtxFn.ident_mtx(len(rhoa)) / len(rhoa) witness = rhoa - rhob - wdist = (Product(witness, rhoa) - sepmax) / math.sqrt(Product(witness, witness)) + wdist = (MtxFn.product(witness, rhoa) - sepmax) / math.sqrt( + MtxFn.product(witness, witness) + ) if wdist < 0: if verboseflag == True: print("No entanglement witness found.") @@ -1196,7 +1240,7 @@ def WitnessDist(prefix, vis, sepmax, verboseflag): "Witness-based estimated squared distance:", wdist**2, " (VERIFY!!!)" ) # scipy.io.mmwrite("".join([prefix,"_witness_",str(vis),".mtx"]),witness,"".join(["Estimated sqared distance:",str(wdist**2)])) - writemtx( + MtxIO.write_mtx( "".join( [prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"] ), @@ -1390,7 +1434,7 @@ def main(args): correctdimflag == False wrongdim(prefix, mode) else: - rho = vis * rho + (1 - vis) * IdMatrix(totdim) / totdim + rho = vis * rho + (1 - vis) * MtxFn.ident_mtx(totdim) / totdim rho1 = np.zeros((totdim, totdim)) steps = int(args[5]) if steps == 0: From 751ed87db7b0d46b45200e82a044dd8c960a103b Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 17:30:14 +0100 Subject: [PATCH 005/227] Restructurize files to match typical poetry based project structure --- README.md | Bin 28 -> 12 bytes CSSFinder.py => cssfinder/__init__.py | 24 +- poetry.toml | 2 + pyproject.toml | 633 ++++++++++++++++++++++++++ 4 files changed, 646 insertions(+), 13 deletions(-) rename CSSFinder.py => cssfinder/__init__.py (98%) create mode 100644 poetry.toml create mode 100644 pyproject.toml diff --git a/README.md b/README.md index 7321babaa788cffb04e9c413fc8314061fa620f3..453f51fd133953b56650448a1f7777d3f38c72ef 100644 GIT binary patch literal 12 TcmY#Za1IW3%gjqjE#d+I6=VaC literal 28 hcmezWPnki1!I>c#2;CSm8S)rX7*ZLE7 NDArray[DTYPE]: if symtype == 0: for i1 in range(cols): for i2 in range(rows): - retval[i2][i1] = getnum(file, vartype) + retval[i2][i1] = MtxIO.get_number(file, vartype) elif symtype == 1 and rows == cols: for i1 in range(cols): for i2 in range(i1, rows): - retval[i2][i1] = getnum(file, vartype) + retval[i2][i1] = MtxIO.get_number(file, vartype) retval[i1][i2] = retval[i2][i1] elif symtype == 2 and rows == cols: for i1 in range(0, cols): for i2 in range(i1 + 1, rows): - retval[i2][i1] = getnum(file, vartype) + retval[i2][i1] = MtxIO.get_number(file, vartype) retval[i1][i2] = -retval[i2][i1] elif symtype == 3 and rows == cols: for i1 in range(0, cols): for i2 in range(i1, rows): - retval[i2][i1] = getnum(file, vartype) + retval[i2][i1] = MtxIO.get_number(file, vartype) retval[i1][i2] = np.conj(retval[i2][i1]) if shape == 0 and descr == 1: rows = line[0] @@ -327,7 +329,7 @@ def Random2FS(n): def RandomdFS(d, n): q1 = MtxFn.normalize(MtxFn.generate(d)) for l1 in range(n - 1): - q1 = Outer(q1, MtxFn.normalize(MtxFn.generate(d))) + q1 = MtxFn.outer(q1, MtxFn.normalize(MtxFn.generate(d))) return MtxFn.project(q1) @@ -1389,14 +1391,10 @@ def DisplayHelp(): # Display the Logo def DisplayLogo(): - print(" ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗") - if True: - print("██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗") - if True: - print( - "██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝" - ) - print("██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗") + print(" ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ ") + print("██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗") + print("██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝") + print("██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗") print("╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║") print(" ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝") diff --git a/poetry.toml b/poetry.toml new file mode 100644 index 0000000..efa46ec --- /dev/null +++ b/poetry.toml @@ -0,0 +1,2 @@ +[virtualenvs] +in-project = true \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..d5e22db --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,633 @@ +[tool.poetry] # ANCHOR: tool.poetry +name = "cssfinder" +version = "0.1.0" +description = "" +authors = [] +readme = "README.md" + +[tool.poetry.dependencies] # ANCHOR: tool.poetry.dependencies +python = "^3.8" +click = "^8.1.3" +numpy = "^1.24.0" +numba = "^0.56.4" + +[tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies +black = "^22.12.0" +pylint = "^2.15.9" +isort = "^5.11.4" +docformatter = "^1.5.1" +pytest = "^7.2.0" +autoflake = "^2.0.0" +pre-commit = "^2.20.0" +pytest-cov = "^4.0.0" +mypy = "^0.991" +ptpython = "^3.0.22" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] # ANCHOR: tool.pytest +minversion = "7.1.0" +norecursedirs = ["external", "data"] +python_files = ["test_*.py", "*_test.py"] +testpaths = ["src/eldritch", "test"] +addopts = """ -ra --strict-markers --doctest-modules --log-level=DEBUG --cov-report=term-missing:skip-covered""" +filterwarnings = [] + +[tool.isort] # ANCHOR: tool.isort +# ---------------------------------------------------------------------------- # +# https://pycqa.github.io/isort/docs/configuration/options.html # +# ---------------------------------------------------------------------------- # +skip = ["external", ".tox"] +profile = "black" +known_first_party = "eldritch" +src_paths = ["source/eldritch", "test_unit", "test_e2e"] +line_length = 88 + +[tool.black] # ANCHOR: tool.black +# https://black.readthedocs.io/en/stable/usage_and_configuration/the_basics.html#configuration-format +line-length = 88 +target-version = ['py38'] +extend-exclude = "(external)" + +[tool.docformatter] +recursive = true +wrap-summaries = 88 +wrap-descriptions = 88 +blank = true + +[tool.mypy] # ANCHOR: tool.mypy +# ---------------------------------------------------------------------------- # +# https://mypy.readthedocs.io/en/stable/config_file.html # +# https://mypy.readthedocs.io/en/stable/command_line.html # +# https://mypy.readthedocs.io/en/stable/cheat_sheet_py3.html # +# ---------------------------------------------------------------------------- # +python_version = "3.8" +# A regular expression that matches file names, directory names and paths which +# mypy should ignore while recursively discovering files to check. Use forward +#slashes (/) as directory separators on all platforms. +exclude = ["external", ".tox"] +# ---------------------------------------------------------------------------- # +# Import discovery # +# ---------------------------------------------------------------------------- # +# Suppresses error messages about imports that cannot be resolved. +ignore_missing_imports = true +# Directs what to do with imports when the imported module is found as a .py file +# and not part of the files, modules and packages provided on the command line. +# The four possible values are normal, silent, skip and error. For explanations +# see the discussion for the --follow-imports command line flag. +follow_imports = "normal" +# Enables reporting error messages generated within installed packages (see +# :pep:`561` for more details on distributing type information). Those error +# messages are suppressed by default, since you are usually not able to +# control errors in 3rd party code. +no_silence_site_packages = false +# ---------------------------------------------------------------------------- # +# Disallow dynamic typing # +# ---------------------------------------------------------------------------- # +# Disallows usage of types that come from unfollowed imports (anything imported from +# an unfollowed import is automatically given a type of ``Any``). +disallow_any_unimported = false +# Disallows all expressions in the module that have type ``Any``. +disallow_any_expr = false +# Disallows functions that have ``Any`` in their signature after decorator transformation. +disallow_any_decorated = false +# Disallows explicit ``Any`` in type positions such as type annotations and generic +# type parameters. +disallow_any_explicit = false +# Disallows usage of generic types that do not specify explicit type parameters. +disallow_any_generics = false +# Disallows subclassing a value of type ``Any``. +disallow_subclassing_any = false +# ---------------------------------------------------------------------------- # +# Untyped definitions and calls # +# ---------------------------------------------------------------------------- # +# Disallows calling functions without type annotations from functions with type +# annotations. +disallow_untyped_calls = false +# Disallows defining functions without type annotations or with incomplete type +# annotations. +disallow_untyped_defs = true +# Disallows defining functions with incomplete type annotations. +disallow_incomplete_defs = true +# Type-checks the interior of functions without type annotations. +check_untyped_defs = true +# Reports an error whenever a function with type annotations is decorated with a +# decorator without annotations. +disallow_untyped_decorators = false +# ---------------------------------------------------------------------------- # +# None and Optional handling # +# ---------------------------------------------------------------------------- # +# Changes the treatment of arguments with a default value of ``None`` by not implicitly +# making their type :py:data:`~typing.Optional`. +no_implicit_optional = true +# Enables or disables strict Optional checks. If False, mypy treats ``None`` +# as compatible with every type. +strict_optional = true +# ---------------------------------------------------------------------------- # +# Warnings # +# ---------------------------------------------------------------------------- # +# warns about casting an expression to its inferred type. +warn_redundant_casts = true +# Warns about unneeded ``# type: ignore`` comments. +warn_unused_ignores = false +# Shows errors for missing return statements on some execution paths. +no_warn_no_return = false +# Shows a warning when returning a value with type ``Any`` from a function +# declared with a non- ``Any`` return type. +warn_return_any = true +# Shows a warning when encountering any code inferred to be unreachable or +# redundant after performing type analysis. +warn_unreachable = true +# ---------------------------------------------------------------------------- # +# Miscellaneous strictness flags # +# ---------------------------------------------------------------------------- # +# Causes mypy to suppress errors caused by not being able to fully +# infer the types of global and class variables. +allow_untyped_globals = false +# Allows variables to be redefined with an arbitrary type, as long as the redefinition +# is in the same block and nesting level as the original definition. +# Example where this can be useful: +allow_redefinition = true +# Disallows inferring variable type for ``None`` from two assignments in different scopes. +# This is always implicitly enabled when using the :ref:`mypy daemon `. +local_partial_types = false +# By default, imported values to a module are treated as exported and mypy allows +# other modules to import them. When false, mypy will not re-export unless +# the item is imported using from-as or is included in ``__all__``. Note that mypy +# treats stub files as if this is always disabled. For example: +no_implicit_reexport = false +# Prohibit equality checks, identity checks, and container checks between +# non-overlapping types. +strict_equality = true +# ---------------------------------------------------------------------------- # +# https://mypy.readthedocs.io/en/stable/error_codes.html#error-codes # +# ---------------------------------------------------------------------------- # +# Allows disabling one or multiple error codes globally. +# disable_error_code = +# Allows enabling one or multiple error codes globally. +enable_error_code = "redundant-expr" +# ---------------------------------------------------------------------------- # +# Configuring error messages # +# ---------------------------------------------------------------------------- # +# Prefixes each error with the relevant context. +show_error_context = true +# Shows column numbers in error messages. +show_column_numbers = true +# hows error codes in error messages. See :ref:`error-codes` for more information. +show_error_codes = true +# Use visually nicer output in error messages: use soft word wrap, +# show source code snippets, and show error location markers. +pretty = true +# Shows error messages with color enabled. +color_output = true +# Shows a short summary line after error messages. +error_summary = true +# Show absolute paths to files. +show_absolute_path = true + +[tool.pylint.main] # ANCHOR: tool.pylint.main +# Analyse import fallback blocks. This can be used to support both Python 2 and 3 +# compatible code, which means that the block might have code that exists only in +# one or another interpreter, leading to false positives when analysed. +# analyse-fallback-blocks = +# Always return a 0 (non-error) status code, even if lint errors are found. This +# is primarily useful in continuous integration scripts. +# exit-zero = +# A comma-separated list of package or module names from where C extensions may +# be loaded. Extensions are loading into the active Python interpreter and may +# run arbitrary code. +extension-pkg-allow-list = ["pydantic"] +# A comma-separated list of package or module names from where C extensions may +# be loaded. Extensions are loading into the active Python interpreter and may +# run arbitrary code. (This is an alternative name to extension-pkg-allow-list +# for backward compatibility.) +# extension-pkg-whitelist = +# Return non-zero exit code if any of these messages/categories are detected, +# even if score is above --fail-under value. Syntax same as enable. Messages +# specified are enabled, while categories only check already-enabled messages. +# fail-on = +# Specify a score threshold to be exceeded before program exits with error. +fail-under = 10 +# Interpret the stdin as a python script, whose filename needs to be passed as +# the module_or_package argument. +# from-stdin = +# Files or directories to be skipped. They should be base names, not paths. +ignore = ["CVS"] +# Add files or directories matching the regex patterns to the ignore-list. The +# regex matches against paths and can be in Posix or Windows format. +# ignore-paths = +# Files or directories matching the regex patterns are skipped. The regex matches +# against base names, not paths. The default value ignores Emacs file locks +ignore-patterns = ["^\\.#"] +# List of module names for which member attributes should not be checked (useful +# for modules/projects where namespaces are manipulated during runtime and thus +# existing member attributes cannot be deduced by static analysis). It supports +# qualified module names, as well as Unix pattern matching. +# ignored-modules = +# Python code to execute, usually for sys.path manipulation such as +# pygtk.require(). +# init-hook = +# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the +# number of processors available to use, and will cap the count on Windows to +# avoid hangs. +jobs = 1 +# Control the amount of potential inferred values when inferring a single object. +# This can help the performance when dealing with large functions or complex, +# nested conditions. +limit-inference-results = 100 +# List of plugins (as comma separated values of python module names) to load, +# usually to register additional checkers. +# load-plugins = +# Pickle collected data for later comparisons. +persistent = true +# Minimum Python version to use for version dependent checks. Will default to the +# version used to run pylint. +py-version = "3.8" +# Discover python modules and packages in the file system subtree. +# recursive = +# When enabled, pylint would attempt to guess common misconfiguration and emit +# user-friendly hints instead of false-positive error messages. +suggestion-mode = true + +# Allow loading of arbitrary C extensions. Extensions are imported into the +# active Python interpreter and may run arbitrary code. +# unsafe-load-any-extension = +[tool.pylint.basic] # ANCHOR: tool.pylint.basic +# Naming style matching correct argument names. +argument-naming-style = "snake_case" +# Regular expression matching correct argument names. Overrides argument-naming- +# style. If left empty, argument names will be checked with the set naming style. +# argument-rgx = +# Naming style matching correct attribute names. +attr-naming-style = "snake_case" +# Regular expression matching correct attribute names. Overrides attr-naming- +# style. If left empty, attribute names will be checked with the set naming +# style. +# attr-rgx = +# Bad variable names which should always be refused, separated by a comma. +bad-names = ["foo", "bar", "baz", "toto", "tutu", "tata"] +# Bad variable names regexes, separated by a comma. If names match any regex, +# they will always be refused +# bad-names-rgxs = +# Naming style matching correct class attribute names. +class-attribute-naming-style = "any" +# Regular expression matching correct class attribute names. Overrides class- +# attribute-naming-style. If left empty, class attribute names will be checked +# with the set naming style. +# class-attribute-rgx = +# Naming style matching correct class constant names. +class-const-naming-style = "UPPER_CASE" +# Regular expression matching correct class constant names. Overrides class- +# const-naming-style. If left empty, class constant names will be checked with +# the set naming style. +# class-const-rgx = +# Naming style matching correct class names. +class-naming-style = "PascalCase" +# Regular expression matching correct class names. Overrides class-naming-style. +# If left empty, class names will be checked with the set naming style. +# class-rgx = +# Naming style matching correct constant names. +const-naming-style = "UPPER_CASE" +# Regular expression matching correct constant names. Overrides const-naming- +# style. If left empty, constant names will be checked with the set naming style. +# const-rgx = +# Minimum line length for functions/classes that require docstrings, shorter ones +# are exempt. +docstring-min-length = -1 +# Naming style matching correct function names. +function-naming-style = "snake_case" +# Regular expression matching correct function names. Overrides function-naming- +# style. If left empty, function names will be checked with the set naming style. +# function-rgx = +# Good variable names which should always be accepted, separated by a comma. +good-names = ["i", "j", "k", "ex", "Run", "_"] +# Good variable names regexes, separated by a comma. If names match any regex, +# they will always be accepted +# good-names-rgxs = +# Include a hint for the correct naming format with invalid-name. +# include-naming-hint = +# Naming style matching correct inline iteration names. +inlinevar-naming-style = "any" +# Regular expression matching correct inline iteration names. Overrides +# inlinevar-naming-style. If left empty, inline iteration names will be checked +# with the set naming style. +# inlinevar-rgx = +# Naming style matching correct method names. +method-naming-style = "snake_case" +# Regular expression matching correct method names. Overrides method-naming- +# style. If left empty, method names will be checked with the set naming style. +# method-rgx = +# Naming style matching correct module names. +module-naming-style = "snake_case" +# Regular expression matching correct module names. Overrides module-naming- +# style. If left empty, module names will be checked with the set naming style. +# module-rgx = +# Colon-delimited sets of names that determine each other's naming style when the +# name regexes allow several styles. +# name-group = +# Regular expression which should only match function or class names that do not +# require a docstring. +no-docstring-rgx = "(on_.*?_hook|_.*|Test.*|test_.*|Config)" +# List of decorators that produce properties, such as abc.abstractproperty. Add +# to this list to register other decorators that produce valid properties. These +# decorators are taken in consideration only for invalid-name. +property-classes = ["abc.abstractproperty"] +# Regular expression matching correct type variable names. If left empty, type +# variable names will be checked with the set naming style. +# typevar-rgx = +# Naming style matching correct variable names. +variable-naming-style = "snake_case" + +# Regular expression matching correct variable names. Overrides variable-naming- +# style. If left empty, variable names will be checked with the set naming style. +# variable-rgx = +[tool.pylint.classes] # ANCHOR: tool.pylint.classes +# Warn about protected attribute access inside special methods +# check-protected-access-in-special-methods = +# List of method names used to declare (i.e. assign) instance attributes. +defining-attr-methods = [ + "__init__", + "__new__", + "setUp", + "__post_init__", + "_setup", + "setup_method", +] +# List of member names, which should be excluded from the protected access +# warning. +exclude-protected = ["_asdict", "_fields", "_replace", "_source", "_make"] +# List of valid names for the first argument in a class method. +valid-classmethod-first-arg = ["cls"] +# List of valid names for the first argument in a metaclass class method. +valid-metaclass-classmethod-first-arg = ["cls"] + +[tool.pylint.design] # ANCHOR: tool.pylint.design +# List of regular expressions of class ancestor names to ignore when counting +# public methods (see R0903) +exclude-too-few-public-methods = [".*"] +# List of qualified class names to ignore when counting class parents (see R0901) +# ignored-parents = +# Maximum number of arguments for function / method. +max-args = 6 +# Maximum number of attributes for a class (see R0902). +max-attributes = 24 +# Maximum number of boolean expressions in an if statement (see R0916). +max-bool-expr = 2 +# Maximum number of branch for function / method body. +max-branches = 12 +# Maximum number of locals for function / method body. +max-locals = 15 +# Maximum number of parents for a class (see R0901). +max-parents = 7 +# Maximum number of public methods for a class (see R0904). +max-public-methods = 20 +# Maximum number of return / yield for function / method body. +max-returns = 12 +# Maximum number of statements in function / method body. +max-statements = 50 +# Minimum number of public methods for a class (see R0903). +min-public-methods = 0 + +[tool.pylint.exceptions] # ANCHOR: tool.pylint.exceptions +# Exceptions that will emit a warning when caught. +overgeneral-exceptions = ["BaseException", "Exception"] + +[tool.pylint.format] # ANCHOR: tool.pylint.format +# Expected format of line ending, e.g. empty (any line ending), LF or CRLF. +# expected-line-ending-format = +# Regexp for a line that is allowed to be longer than the limit. +ignore-long-lines = "^\\s*(# )??$" +# Number of spaces of indent required inside a hanging or continued line. +indent-after-paren = 4 +# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1 +# tab). +indent-string = " " +# Maximum number of characters on a single line. +max-line-length = 88 +# Maximum number of lines in a module. +max-module-lines = 3000 + +# Allow the body of a class to be on the same line as the declaration if body +# contains single statement. +# single-line-class-stmt = +# Allow the body of an if to be on the same line as the test if there is no else. +# single-line-if-stmt = +[tool.pylint.imports] # ANCHOR: tool.pylint.imports +# List of modules that can be imported at any level, not just the top level one. +# allow-any-import-level = +# Allow wildcard imports from modules that define __all__. +# allow-wildcard-with-all = +# Deprecated modules which should not be used, separated by a comma. +# deprecated-modules = +# Output a graph (.gv or any supported image format) of external dependencies to +# the given file (report RP0402 must not be disabled). +# ext-import-graph = +# Output a graph (.gv or any supported image format) of all (i.e. internal and +# external) dependencies to the given file (report RP0402 must not be disabled). +# import-graph = +# Output a graph (.gv or any supported image format) of internal dependencies to +# the given file (report RP0402 must not be disabled). +# int-import-graph = +# Force import order to recognize a module as part of the standard compatibility +# libraries. +# known-standard-library = +# Force import order to recognize a module as part of a third party library. +known-third-party = ["enchant"] + +# Couples of modules and preferred modules, separated by a comma. +# preferred-modules = +[tool.pylint.logging] # ANCHOR: tool.pylint.logging +# The type of string formatting that logging methods do. `old` means using % +# formatting, `new` is for `{}` formatting. +logging-format-style = "new" +# Logging modules to check that the string format arguments are in logging +# function parameter format. +logging-modules = ["logging"] + +[tool.pylint."messages control"] # ANCHOR: tool.pylint."messages control" +# Only show warnings with the listed confidence levels. Leave empty to show all. +# Valid levels: HIGH, CONTROL_FLOW, INFERENCE, INFERENCE_FAILURE, UNDEFINED. +confidence = [ + "HIGH", + "CONTROL_FLOW", + "INFERENCE", + "INFERENCE_FAILURE", + "UNDEFINED", +] +# Disable the message, report, category or checker with the given id(s). You can +# either give multiple identifiers separated by comma (,) or put this option +# multiple times (only on the command line, not in the configuration file where +# it should appear only once). You can also use "--disable=all" to disable +# everything first and then re-enable specific checks. For example, if you want +# to run only the similarities checker, you can use "--disable=all +# --enable=similarities". If you want to run only the classes checker, but have +# no Warning level messages displayed, use "--disable=all --enable=classes +# --disable=W". +disable = [ + "raw-checker-failed", + "bad-inline-option", + "locally-disabled", + "file-ignored", + "suppressed-message", + "useless-suppression", + "deprecated-pragma", + "use-symbolic-message-instead", +] +# Enable the message, report, category or checker with the given id(s). You can +# either give multiple identifier separated by comma (,) or put this option +# multiple time (only on the command line, not in the configuration file where it +# should appear only once). See also the "--disable" option for examples. +enable = ["c-extension-no-member"] + +[tool.pylint.miscellaneous] # ANCHOR: tool.pylint.miscellaneous +# List of note tags to take in consideration, separated by a comma. +notes = ["FIXME", "XXX", "TODO"] + +# Regular expression of note tags to take in consideration. +# notes-rgx = +[tool.pylint.refactoring] # ANCHOR: tool.pylint.refactoring +# Maximum number of nested blocks for function / method body +max-nested-blocks = 5 +# Complete name of functions that never returns. When checking for inconsistent- +# return-statements if a never returning function is called then it will be +# considered as an explicit return statement and no message will be printed. +never-returning-functions = ["sys.exit", "argparse.parse_error"] + +[tool.pylint.reports] # ANCHOR: tool.pylint.reports +# Python expression which should return a score less than or equal to 10. You +# have access to the variables 'fatal', 'error', 'warning', 'refactor', +# 'convention', and 'info' which contain the number of messages in each category, +# as well as 'statement' which is the total number of statements analyzed. This +# score is used by the global evaluation report (RP0004). +evaluation = "max(0, 0 if fatal else 10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10))" +# Template used to display messages. This is a python new-style format string +# used to format the message information. See doc for all details. +# msg-template = +# Set the output format. Available formats are text, parseable, colorized, json +# and msvs (visual studio). You can also give a reporter class, e.g. +# mypackage.mymodule.MyReporterClass. +# output-format = +# Tells whether to display a full report or only the messages. +# reports = +# Activate the evaluation score. +score = true + +[tool.pylint.similarities] # ANCHOR: tool.pylint.similarities +# Comments are removed from the similarity computation +ignore-comments = true +# Docstrings are removed from the similarity computation +ignore-docstrings = true +# Imports are removed from the similarity computation +ignore-imports = true +# Signatures are removed from the similarity computation +ignore-signatures = true +# Minimum lines number of a similarity. +min-similarity-lines = 4 + +[tool.pylint.spelling] # ANCHOR: tool.pylint.spelling +# Limits count of emitted suggestions for spelling mistakes. +max-spelling-suggestions = 4 +# Spelling dictionary name. Available dictionaries: none. To make it work, +# install the 'python-enchant' package. +# spelling-dict = +# List of comma separated words that should be considered directives if they +# appear at the beginning of a comment and should not be checked. +spelling-ignore-comment-directives = "fmt: on,fmt: off,noqa:,noqa,nosec,isort:skip,mypy:" + +# List of comma separated words that should not be checked. +# spelling-ignore-words = +# A path to a file that contains the private dictionary; one word per line. +# spelling-private-dict-file = +# Tells whether to store unknown words to the private dictionary (see the +# --spelling-private-dict-file option) instead of raising a message. +# spelling-store-unknown-words = +[tool.pylint.string] # ANCHOR: tool.pylint.string +# This flag controls whether inconsistent-quotes generates a warning when the +# character used as a quote delimiter is used inconsistently within a module. +check-quote-consistency = true +# This flag controls whether the implicit-str-concat should generate a warning on +# implicit string concatenation in sequences defined over several lines. +check-str-concat-over-line-jumps = true + +[tool.pylint.typecheck] # ANCHOR: tool.pylint.typecheck +# List of decorators that produce context managers, such as +# contextlib.contextmanager. Add to this list to register other decorators that +# produce valid context managers. +contextmanager-decorators = ["contextlib.contextmanager"] +# List of members which are set dynamically and missed by pylint inference +# system, and so shouldn't trigger E1101 when accessed. Python regular +# expressions are accepted. +generated-members = "" +# Tells whether missing members accessed in mixin class should be ignored. A +# class is considered mixin if its name matches the mixin-class-rgx option. +# Tells whether to warn about missing members when the owner of the attribute is +# inferred to be None. +ignore-none = true +# This flag controls whether pylint should warn about no-member and similar +# checks whenever an opaque object is returned when inferring. The inference can +# return multiple potential results while evaluating a Python object, but some +# branches might not be evaluated, which results in partial inference. In that +# case, it might be useful to still emit no-member and other checks for the rest +# of the inferred objects. +ignore-on-opaque-inference = true +# List of symbolic message names to ignore for Mixin members. +ignored-checks-for-mixins = [ + "no-member", + "not-async-context-manager", + "not-context-manager", + "attribute-defined-outside-init", +] +# List of class names for which member attributes should not be checked (useful +# for classes with dynamically set attributes). This supports the use of +# qualified names. +ignored-classes = [ + "optparse.Values", + "thread._local", + "_thread._local", + "argparse.Namespace", + "_HookRelay", +] +# Show a hint with possible names when a member name was not found. The aspect of +# finding the hint is based on edit distance. +missing-member-hint = true +# The minimum edit distance a name should have in order to be considered a +# similar match for a missing member name. +missing-member-hint-distance = 1 +# The total number of similar names that should be taken in consideration when +# showing a hint for a missing member. +missing-member-max-choices = 1 +# Regex pattern to define which classes are considered mixins. +mixin-class-rgx = ".*[Mm]ixin" + +# List of decorators that change the signature of a decorated function. +# signature-mutators = +[tool.pylint.variables] # ANCHOR: tool.pylint.variables +# List of additional names supposed to be defined in builtins. Remember that you +# should avoid defining new builtins when possible. +# additional-builtins = +# Tells whether unused global variables should be treated as a violation. +allow-global-unused-variables = true +# List of names allowed to shadow builtins +# allowed-redefined-builtins = +# List of strings which can identify a callback function by name. A callback name +# must start or end with one of those strings. +callbacks = ["cb_", "_cb"] +# A regular expression matching the name of dummy variables (i.e. expected to not +# be used). +dummy-variables-rgx = "_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_" +# Argument names that match this expression will be ignored. Default to name with +# leading underscore. +ignored-argument-names = "_.*|^ignored_|^unused_" +# Tells whether we should check for unused import in __init__ files. +# init-import = +# List of qualified module names which can have objects that can redefine +# builtins. +redefining-builtins-modules = [ + "six.moves", + "past.builtins", + "future.builtins", + "builtins", + "io", +] From 19f20d891f6e18ca2a6d4c219bdcb9e6dc19355d Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 17:37:44 +0100 Subject: [PATCH 006/227] Add 'Building' section to readme --- README.md | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/README.md b/README.md index 453f51f..30b89e8 100644 --- a/README.md +++ b/README.md @@ -1 +1,33 @@ # CSSFinder + +## Building + +To build wheel file You have to use [poetry](https://pypi.org/project/poetry/) +(version 1.3.1 is recommended): + +``` +pip install poetry==1.3.1 +``` + +Then run: + +``` +poetry build --format=wheel +``` + +Wheel file will be created: `dist/cssfinder-x.y.z-py3-none-any.whl`. +To install it, use pip: + +``` +pip install dist/cssfinder-x.y.z-py3-none-any.whl +``` + +**Important**: Replace `x.y.z` with current version of CSSFinder. +You can find it in `pyproject.toml` file in root of repository. + +```toml +[tool.poetry] +# ... +version = "x.y.z" +# ... +``` From a6c12b0dadb123d622de8cb0500d5f4a0b8b132a Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 18:26:16 +0100 Subject: [PATCH 007/227] Fix dependencies selection + add cli entrypoint --- cssfinder/cli.py | 6 + poetry.lock | 1110 ++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 6 +- 3 files changed, 1121 insertions(+), 1 deletion(-) create mode 100644 cssfinder/cli.py create mode 100644 poetry.lock diff --git a/cssfinder/cli.py b/cssfinder/cli.py new file mode 100644 index 0000000..6d61d3c --- /dev/null +++ b/cssfinder/cli.py @@ -0,0 +1,6 @@ +import sys +from cssfinder import main as _main + + +def main() -> None: + _main(sys.argv) diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..6f932e0 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1110 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "dev" +optional = false +python-versions = "*" +files = [ + {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, + {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, +] + +[[package]] +name = "astroid" +version = "2.12.13" +description = "An abstract syntax tree for Python with inference support." +category = "dev" +optional = false +python-versions = ">=3.7.2" +files = [ + {file = "astroid-2.12.13-py3-none-any.whl", hash = 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"b8fd33efceb32c990f3008cbb495539720fc161f18e0fb8187eb53e429be2593" diff --git a/pyproject.toml b/pyproject.toml index fc749d6..77d5744 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,6 +10,7 @@ python = "^3.8" click = "^8.1.3" numpy = "^1.23.0" numba = "^0.56.4" +pendulum = "^2.1.2" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" From b4ea27d8cb82dd7b2721620ca36a887f5a8f09ad Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 22:52:49 +0100 Subject: [PATCH 009/227] Add logging configuration handling --- cssfinder/log.py | 116 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 116 insertions(+) create mode 100644 cssfinder/log.py diff --git a/cssfinder/log.py b/cssfinder/log.py new file mode 100644 index 0000000..847f3ca --- /dev/null +++ b/cssfinder/log.py @@ -0,0 +1,116 @@ +from __future__ import annotations +import logging +import logging.handlers as handlers +from pathlib import Path +import sys +from typing import Any, MutableMapping + +LOGGER: logging.Logger +VERBOSITY_MAP: dict[int, int] = { + 0: logging.CRITICAL, + 1: logging.WARNING, + 2: logging.INFO, + 3: logging.DEBUG, +} +LOG_ENCODING: str = "utf-8" +LOG_DIR: Path = Path("log") +LOG_FILE: Path = LOG_DIR / "cssfinder.log" + + +from inspect import signature + + +class _FormatStr: + def __init__(self, fmt: str, args: Any, kwargs: Any) -> None: + self.fmt = fmt + self.args = args + self.kwargs = kwargs + + def __str__(self) -> str: + return str(self.fmt).format(*self.args, **self.kwargs) + + +class FormatStringAdapter(logging.LoggerAdapter): + """Logger adapter adding .format() formatting style support to log commands.""" + + def log(self, level: int, msg: Any, *args: Any, **kwargs: Any) -> None: + if self.isEnabledFor(level): + msg, log_kwargs = self.process(msg, kwargs) + self.logger._log( # pylint: disable=protected-access + level, + _FormatStr(msg, args, kwargs), + (), + **log_kwargs, + ) + + def process( + self, msg: _FormatStr, kwargs: MutableMapping[str, Any] + ) -> tuple[_FormatStr, MutableMapping[str, Any]]: + return msg, { + key: kwargs[key] + for key in signature( + self.logger._log # pylint: disable=protected-access + ).parameters + if key in kwargs + } + + +def enable_logging(verbosity: int) -> None: + """Configure global logger for cssfinder. + + Parameters + ---------- + verbosity : int + Specifies verbosity, 0 is critical, 3 or more is debug, intermediate values + accordingly. When value exceeds this range, it is capped. + """ + global LOGGER # pylint: disable=global-statement + + verbosity = min(3, max(0, verbosity)) + + global_verbosity = logging.DEBUG + logger = logging.getLogger("cssfinder") + logger.setLevel(global_verbosity) + + formatter = logging.Formatter( + "[%(asctime)s] - %(name)s - %(levelname)s - %(message)s", + datefmt="%y.%m.%d %H:%M:%S", + ) + + sys.stderr.reconfigure(encoding=LOG_ENCODING) # type: ignore + + stream_verbosity = VERBOSITY_MAP.get(verbosity, 3) + stream_handler = logging.StreamHandler(sys.stderr) + stream_handler.setLevel(stream_verbosity) + stream_handler.setFormatter(formatter) + + logger.addHandler(stream_handler) + + LOG_DIR.mkdir(0o777, True, True) + log_file_already_exists = LOG_FILE.exists() + + file_verbosity = logging.DEBUG + file_handler = handlers.TimedRotatingFileHandler( + LOG_FILE, + # Only way to get full time stamp is to select "S" - seconds + when="S", + # Roll over during execution only after 24h, but time stamp includes seconds, + # thus rollover on the beginning of execution will be noticed after 1 second + interval=24 * 60 * 60, + backupCount=10, + encoding=LOG_ENCODING, + ) + file_handler.setLevel(file_verbosity) + file_handler.setFormatter(formatter) + + if log_file_already_exists: + file_handler.doRollover() + + logger.addHandler(file_handler) + + LOGGER = FormatStringAdapter(logger) + + +def get_logger() -> logging.Logger: + """Return CSSFinder logger instance.""" + return LOGGER From 87b3ce99a32166a97d3d5f13e36856f9ea2cab87 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 22:53:10 +0100 Subject: [PATCH 010/227] Add new command line interface --- cssfinder/cli.py | 118 +++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 115 insertions(+), 3 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 6d61d3c..80069b2 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,6 +1,118 @@ -import sys +from __future__ import annotations +from typing import Optional + +import click +import pendulum from cssfinder import main as _main +from cssfinder.io import show_logo +from cssfinder.log import enable_logging, get_logger + + +@click.command() +@click.option( + "-v", + "--verbose", + default=0, + count=True, + help="Control verbosity of logging, by default critical only, use " + "-v, -vv, -vvv to gradually increase it.", +) +@click.argument( + "mode", + type=click.Choice(["FSNQ", "FSNQ+", "SBS", "G3PE3Q", "G4PE3Q"]), +) +@click.option( + "-i", + "--input", + required=True, + type=click.Path(exists=True, file_okay=False, dir_okay=True, resolve_path=True), + help="See INPUT section.", +) +@click.option( + "--vis", + type=float, + required=True, + help="visibility against white noise. Between 0 and 1. To be used when the " + "algorithm is stuck.", +) +@click.option( + "--steps", + type=int, + required=True, + help="Number of attempts to correct the closest separable state. A negative " + "number adds its value to pre-existing list of results. Rounded down to a " + "multiple of 10.", +) +@click.option( + "--cors", + type=int, + required=True, + help="Maximal number of corrections to the closest separable state. A " + "negative number adds its value to pre-existing list of results. " + "Rounded down to a multiple of 50", +) +@click.option( + "-o", + "--output", + required=False, + default=None, + help="Path to directory to put output files in.", +) +def main( + verbose: int, + vis: float, + steps: int, + cors: int, + mode: str, + input: str, + output: Optional[str], +) -> None: + """ + \b + MODE: + FSNQ - full separability of an n-quDit state. + FSNQ+ - full separability of an n-quDit state (d1 optional and can be + arbitrary). + SBS - separability of a bipartite state. + G3PE3Q - genuine 3-partite entaglement of a 3-quDit state + G4PE3Q - genuine 4-partite entaglement of a 3-quDit state + + \b + INPUT: + Path to the directory containing input files, folder should be named with + prefix used by input files inside. All files are expected to be in + Matrix Market exchange format. + Files which can be included: + - {prefix}_in.mtx - the input state. (Required) + - {prefix}_sym_0_0.mtx,{prefix}_sym_0_1.mtx,... - (Optional) + symmetry unitaries applied to the output state. The first number + following the prefix is the symmetry label, the second is the manifold. + - {prefix}_proj.mtx - (Optional) projections applied to the output state. + + \b + Output: + ------- + If these files exist, the program will resume from the last record: + - prefix_mode_d1_out_vis.mtx: final separable state (can be used as an + initial separable state) + - prefix_mode_d1_list_vis.mtx: number of steps, corrections, and the + squared HS distance every 50 corrections + - prefix_report_mode_d1_vis.txt: The report file. + - prefix_abort.txt: The error message if the algorithm was extremely slow + (for some highly entangled states). + """ + show_logo() + enable_logging(verbose) -def main() -> None: - _main(sys.argv) + logger = get_logger() + logger.info("CSSFinder started at {}", pendulum.now()) + logger.debug("INPUT PARAMETERS") + logger.debug("================") + logger.debug(" verbose = {0!r}", verbose) + logger.debug(" vis = {0!r}", vis) + logger.debug(" steps = {0!r}", steps) + logger.debug(" cors = {0!r}", cors) + logger.debug(" mode = {0!r}", mode) + logger.debug(" input = {0!r}", input) + logger.debug(" output = {0!r}", output) From 9a57b5f53d55a71cb9341635d2775413bd370e86 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 23:03:32 +0100 Subject: [PATCH 011/227] Ignore FormatStringAdapter use type error --- cssfinder/log.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/log.py b/cssfinder/log.py index 847f3ca..88eb19c 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -108,7 +108,7 @@ def enable_logging(verbosity: int) -> None: logger.addHandler(file_handler) - LOGGER = FormatStringAdapter(logger) + LOGGER = FormatStringAdapter(logger) # type: ignore def get_logger() -> logging.Logger: From bb98e44821b72267da5bcf3a12272b99bc47b3bd Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 23:04:09 +0100 Subject: [PATCH 012/227] Add missing show_logo() implementation --- cssfinder/io.py | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 cssfinder/io.py diff --git a/cssfinder/io.py b/cssfinder/io.py new file mode 100644 index 0000000..3c4b38e --- /dev/null +++ b/cssfinder/io.py @@ -0,0 +1,16 @@ +"""Program input/output utilities. +""" + + +def show_logo() -> None: + """Print CSSFinder logo ASCII art.""" + print( + """ + ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ + ██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗ + ██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝ + ██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗ + ╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║ + ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝ +""" + ) From c4466bff65d4f471953a0f82533ed49a48e20e0d Mon Sep 17 00:00:00 2001 From: Argmaster Date: Thu, 22 Dec 2022 23:36:10 +0100 Subject: [PATCH 013/227] Add Task interface --- cssfinder/cli.py | 28 +++++++++++---- cssfinder/task.py | 87 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 108 insertions(+), 7 deletions(-) create mode 100644 cssfinder/task.py diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 80069b2..4683587 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,11 +1,13 @@ from __future__ import annotations +from pathlib import Path from typing import Optional import click import pendulum -from cssfinder import main as _main +from cssfinder.api import run from cssfinder.io import show_logo from cssfinder.log import enable_logging, get_logger +from cssfinder.task import Task @click.command() @@ -24,6 +26,7 @@ @click.option( "-i", "--input", + "input_dir", required=True, type=click.Path(exists=True, file_okay=False, dir_okay=True, resolve_path=True), help="See INPUT section.", @@ -55,16 +58,16 @@ "-o", "--output", required=False, - default=None, + default=(Path.cwd() / "out").as_posix(), help="Path to directory to put output files in.", ) -def main( +def main( # pylint: disable=too-many-arguments verbose: int, vis: float, steps: int, cors: int, mode: str, - input: str, + input_dir: str, output: Optional[str], ) -> None: """ @@ -74,8 +77,8 @@ def main( FSNQ+ - full separability of an n-quDit state (d1 optional and can be arbitrary). SBS - separability of a bipartite state. - G3PE3Q - genuine 3-partite entaglement of a 3-quDit state - G4PE3Q - genuine 4-partite entaglement of a 3-quDit state + G3PE3Q - genuine 3-partite entanglement of a 3-quDit state + G4PE3Q - genuine 4-partite entanglement of a 3-quDit state \b INPUT: @@ -106,6 +109,7 @@ def main( enable_logging(verbose) logger = get_logger() + # String formatting reference: https://peps.python.org/pep-3101/ logger.info("CSSFinder started at {}", pendulum.now()) logger.debug("INPUT PARAMETERS") logger.debug("================") @@ -114,5 +118,15 @@ def main( logger.debug(" steps = {0!r}", steps) logger.debug(" cors = {0!r}", cors) logger.debug(" mode = {0!r}", mode) - logger.debug(" input = {0!r}", input) + logger.debug(" input = {0!r}", input_dir) logger.debug(" output = {0!r}", output) + + task = Task.new( + mode=mode, + visibility=vis, + steps=steps, + correlations=cors, + input_dir=input_dir, + output_dir=output, + ) + run(task) diff --git a/cssfinder/task.py b/cssfinder/task.py new file mode 100644 index 0000000..96fbb5c --- /dev/null +++ b/cssfinder/task.py @@ -0,0 +1,87 @@ +from __future__ import annotations +from dataclasses import dataclass +from enum import Enum +from pathlib import Path +from typing import Type, TypeVar + + +DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" + + +class Mode(Enum): + """List of possible execution modes.""" + + FSNQ = "FSNQ" + """Full separability of an n-quDit state.""" + + FSNQ_PLUS = "FSNQ+" + """Full separability of an n-quDit state (d1 optional and can be arbitrary).""" + + SBS = "SBS" + """Separability of a bipartite state.""" + + G3PE3Q = "G3PE3Q" + """Genuine 3-partite entanglement of a 3-quDit state""" + + G4PE3Q = "G4PE3Q" + """Genuine 4-partite entanglement of a 3-quDit state""" + + +_TaskT = TypeVar("_TaskT", bound="Task") + + +@dataclass(frozen=True) +class Task: + """Task specification for algorithm.""" + + mode: Mode + visibility: float + steps: int + correlations: int + input_dir: Path + output_dir: Path + + @classmethod + def new( # pylint: disable=too-many-arguments + cls: Type[_TaskT], + mode: str | Mode, + visibility: int | float | str, + steps: int | float | str, + correlations: int | float | str, + input_dir: str | Path, + output_dir: str | Path | None, + ) -> _TaskT: + """Create new Task instance with automatic field data validation. + + Parameters + ---------- + mode : str | Mode + Algorithm mode. + visibility : int | float | str + visibility against white noise. + steps : int | float | str + Number of attempts to correct the closest separable state. + correlations : int | float | str + Maximal number of corrections to the closest separable state. + input_dir : str | Path + Path to the directory containing input files. + output_dir : str | Path | None + Path to directory to put output files in. + + Returns + ------- + _TaskT + Task instance. + """ + return cls( + Mode(mode), + min(1.0, max(0.0, float(visibility))), + (int(steps) // 10) * 10, + (int(correlations) // 50) * 50, + Path(input_dir), + Path(output_dir) if output_dir is not None else DEFAULT_TASK_OUT_DIR, + ) + + def describe(self) -> str: + """Short task content description as string.""" + return f"<{self.mode.value}/{self.visibility}/{self.steps}/{self.correlations}/{self.input_dir}>" From bb6a75be92efcede8e397d514685fb1f672ee891 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 00:56:51 +0100 Subject: [PATCH 014/227] Extend Task class interface for Path operations --- cssfinder/task.py | 62 +++++++++++++++++++++++++++++++++++++++++------ 1 file changed, 54 insertions(+), 8 deletions(-) diff --git a/cssfinder/task.py b/cssfinder/task.py index 96fbb5c..f254633 100644 --- a/cssfinder/task.py +++ b/cssfinder/task.py @@ -2,13 +2,13 @@ from dataclasses import dataclass from enum import Enum from pathlib import Path -from typing import Type, TypeVar +from typing import Optional, Type, TypeVar DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" -class Mode(Enum): +class ModeFlag(Enum): """List of possible execution modes.""" FSNQ = "FSNQ" @@ -30,26 +30,32 @@ class Mode(Enum): _TaskT = TypeVar("_TaskT", bound="Task") -@dataclass(frozen=True) +@dataclass class Task: """Task specification for algorithm.""" - mode: Mode + mode: ModeFlag visibility: float steps: int correlations: int + input_dir: Path output_dir: Path + size: Optional[int] + sub_sys_number: Optional[int] + @classmethod def new( # pylint: disable=too-many-arguments cls: Type[_TaskT], - mode: str | Mode, + mode: str | ModeFlag, visibility: int | float | str, steps: int | float | str, correlations: int | float | str, input_dir: str | Path, output_dir: str | Path | None, + size: int | None, + sub_system_number: int | None, ) -> _TaskT: """Create new Task instance with automatic field data validation. @@ -73,15 +79,55 @@ def new( # pylint: disable=too-many-arguments _TaskT Task instance. """ - return cls( - Mode(mode), + instance = cls( + ModeFlag(mode), min(1.0, max(0.0, float(visibility))), (int(steps) // 10) * 10, (int(correlations) // 50) * 50, Path(input_dir), Path(output_dir) if output_dir is not None else DEFAULT_TASK_OUT_DIR, + size, + sub_system_number, ) + return instance def describe(self) -> str: """Short task content description as string.""" - return f"<{self.mode.value}/{self.visibility}/{self.steps}/{self.correlations}/{self.input_dir}>" + return ( + f"<{self.mode.value}/{self.visibility}/{self.steps}/" + f"{self.correlations}/{self.input_dir}>" + ) + + def get_prefix(self) -> str: + """File and directory prefix.""" + return self.input_dir.name + + def get_input_file(self) -> Path: + """Path to file containing input state.""" + return self.input_dir / f"{self.get_prefix()}_in.mtx" + + def get_input_symmetry_files(self) -> list[Path]: + """Paths to all symmetry files.""" + # TODO implement + return [self.input_dir / f"{self.get_prefix()}_sym_0_0.mtx"] + + def get_input_projection_file(self) -> Path: + """Path to input projection file.""" + # TODO implement + return self.input_dir / f"{self.get_prefix()}_proj.mtx" + + def get_output_list_file(self) -> Path: + return ( + self.output_dir + / f"{self.get_prefix()}_list_{self.get_identifier_suffix()}.mtx" + ) + + def get_identifier_suffix(self) -> str: + """Suffix containing general description of configuration used for task.""" + return f"{self.mode.value}_{self.visibility}_{self.size}_{self.sub_sys_number}" + + def get_output_out_file(self) -> Path: + return ( + self.output_dir + / f"{self.get_prefix()}_out_{self.get_identifier_suffix()}.mtx" + ) From ee512a41d71f97c1ea29c5a504c63ecf9c0a39c0 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 01:23:58 +0100 Subject: [PATCH 015/227] Add basics of size awareness and mode handling --- cssfinder/api.py | 15 +++++ cssfinder/cli.py | 18 ++++++ cssfinder/modes.py | 152 +++++++++++++++++++++++++++++++++++++++++++++ cssfinder/task.py | 36 +++-------- 4 files changed, 194 insertions(+), 27 deletions(-) create mode 100644 cssfinder/api.py create mode 100644 cssfinder/modes.py diff --git a/cssfinder/api.py b/cssfinder/api.py new file mode 100644 index 0000000..139ef1a --- /dev/null +++ b/cssfinder/api.py @@ -0,0 +1,15 @@ +from cssfinder.log import get_logger +from cssfinder.task import Task + + +def run(task: Task) -> None: + """Run algorithm task. + + Parameters + ---------- + task : Task + Task to execute. + """ + logger = get_logger() + logger.debug("Received new task ID {}", id(task)) + logger.debug("{}", task.describe()) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 4683587..b8eeba6 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -61,6 +61,20 @@ default=(Path.cwd() / "out").as_posix(), help="Path to directory to put output files in.", ) +@click.option( + "-s", + "--size", + type=int, + default=None, + help="Size of system", +) +@click.option( + "-n", + "--sub-sys-number", + type=int, + default=None, + help="Number of subsystems", +) def main( # pylint: disable=too-many-arguments verbose: int, vis: float, @@ -69,6 +83,8 @@ def main( # pylint: disable=too-many-arguments mode: str, input_dir: str, output: Optional[str], + size: Optional[str], + sub_sys_count: Optional[str], ) -> None: """ \b @@ -128,5 +144,7 @@ def main( # pylint: disable=too-many-arguments correlations=cors, input_dir=input_dir, output_dir=output, + size=size, + sub_sys_count=sub_sys_count, ) run(task) diff --git a/cssfinder/modes.py b/cssfinder/modes.py new file mode 100644 index 0000000..85f099d --- /dev/null +++ b/cssfinder/modes.py @@ -0,0 +1,152 @@ +from __future__ import annotations +from abc import ABC, abstractmethod +from enum import Enum +import math +from typing import Type + +import numpy as np + +from cssfinder.log import get_logger + +# fmt: off +# pylint: disable=line-too-long +PRIMES = ( + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, + 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, + 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, + 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, + 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, + 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, + 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, + 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, + 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, + 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, + 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, + 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, + 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, + 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, + 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, + 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, + 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, + 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, + 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, + 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, + 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, + 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, + 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, + 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, + 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, + 1973, 1979, 1987, 1993, 1997, 1999, +) +# pylint: enable=line-too-long +# fmt: on + + +class Mode(Enum): + """List of possible execution modes.""" + + FSNQ = "FSNQ" + """Full separability of an n-quDit state.""" + + FSNQ_PLUS = "FSNQ+" + """Full separability of an n-quDit state (d1 optional and can be arbitrary).""" + + SBS = "SBS" + """Separability of a bipartite state.""" + + G3PE3Q = "G3PE3Q" + """Genuine 3-partite entanglement of a 3-quDit state""" + + G4PE3Q = "G4PE3Q" + """Genuine 4-partite entanglement of a 3-quDit state""" + + +class ModeABC(ABC): + @abstractmethod + def detect_dims_none_given(self, total: int) -> tuple[int, int]: + """Detect dimensions of system from loaded data matrix. + + Parameters + ---------- + total : int + Total shape of matrix. + + Returns + ------- + tuple[int, int] + System dimensions. + """ + + @abstractmethod + def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: + """Detect dimensions of system from loaded data matrix. + + Parameters + ---------- + size : int + Already known size. + total : int + Total shape of matrix. + + Returns + ------- + tuple[int, int] + System dimensions. + """ + + @classmethod + def use(cls, mode: Mode) -> Type[ModeABC]: + """Return ModeABC implementation matching Mode flag passed. + + Parameters + ---------- + mode : Mode + Mode enum identifier. + + Returns + ------- + ModeABC + Matching mode class. + """ + return MODE_MAP[mode] + + +class FSNQ(ModeABC): + """Specific to FSNQ mode implementation of Gilbert algorithm related hooks.""" + + def detect_dims_none_given(self, total: int) -> tuple[int, int]: + for prime in PRIMES: + sub_sys_count = int(math.log(total, prime)) + + if sub_sys_count == int(sub_sys_count): + get_logger().debug( + "Determined size: {} and number of subsystems: {}", + prime, + sub_sys_count, + ) + return prime, sub_sys_count + + raise ValueError( + "Couldn't determine size of system, prime number range exceeded." + ) + + def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: + sub_sys_count = int(math.log(total, size)) + + if sub_sys_count == int(sub_sys_count): + get_logger().debug( + "Determined size: {} and number of subsystems: {}", + size, + sub_sys_count, + ) + return size, sub_sys_count + + raise ValueError( + f"Couldn't determine size of system: {sub_sys_count} == " + f"{int(sub_sys_count)} is False.", + ) + + +MODE_MAP: dict[Mode, Type[ModeABC]] = {Mode.FSNQ: FSNQ} diff --git a/cssfinder/task.py b/cssfinder/task.py index f254633..b05336d 100644 --- a/cssfinder/task.py +++ b/cssfinder/task.py @@ -1,30 +1,12 @@ from __future__ import annotations from dataclasses import dataclass -from enum import Enum from pathlib import Path from typing import Optional, Type, TypeVar +from cssfinder.modes import Mode -DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" - - -class ModeFlag(Enum): - """List of possible execution modes.""" - - FSNQ = "FSNQ" - """Full separability of an n-quDit state.""" - FSNQ_PLUS = "FSNQ+" - """Full separability of an n-quDit state (d1 optional and can be arbitrary).""" - - SBS = "SBS" - """Separability of a bipartite state.""" - - G3PE3Q = "G3PE3Q" - """Genuine 3-partite entanglement of a 3-quDit state""" - - G4PE3Q = "G4PE3Q" - """Genuine 4-partite entanglement of a 3-quDit state""" +DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" _TaskT = TypeVar("_TaskT", bound="Task") @@ -34,7 +16,7 @@ class ModeFlag(Enum): class Task: """Task specification for algorithm.""" - mode: ModeFlag + mode: Mode visibility: float steps: int correlations: int @@ -43,19 +25,19 @@ class Task: output_dir: Path size: Optional[int] - sub_sys_number: Optional[int] + sub_sys_count: Optional[int] @classmethod def new( # pylint: disable=too-many-arguments cls: Type[_TaskT], - mode: str | ModeFlag, + mode: str | Mode, visibility: int | float | str, steps: int | float | str, correlations: int | float | str, input_dir: str | Path, output_dir: str | Path | None, size: int | None, - sub_system_number: int | None, + sub_sys_count: int | None, ) -> _TaskT: """Create new Task instance with automatic field data validation. @@ -80,14 +62,14 @@ def new( # pylint: disable=too-many-arguments Task instance. """ instance = cls( - ModeFlag(mode), + Mode(mode), min(1.0, max(0.0, float(visibility))), (int(steps) // 10) * 10, (int(correlations) // 50) * 50, Path(input_dir), Path(output_dir) if output_dir is not None else DEFAULT_TASK_OUT_DIR, size, - sub_system_number, + sub_sys_count, ) return instance @@ -124,7 +106,7 @@ def get_output_list_file(self) -> Path: def get_identifier_suffix(self) -> str: """Suffix containing general description of configuration used for task.""" - return f"{self.mode.value}_{self.visibility}_{self.size}_{self.sub_sys_number}" + return f"{self.mode.value}_{self.visibility}_{self.size}_{self.sub_sys_count}" def get_output_out_file(self) -> Path: return ( From 531c56d0fc3eb323b3fc78a9c40c8c33bc295169 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 10:19:32 +0100 Subject: [PATCH 016/227] Add scipy to deps and fix isort config --- poetry.lock | 41 ++++++++++++++++++++++++++++++++++++++++- pyproject.toml | 8 ++++---- 2 files changed, 44 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index f13723c..f24be7e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -967,6 +967,45 @@ files = [ {file = "PyYAML-6.0.tar.gz", hash = "sha256:68fb519c14306fec9720a2a5b45bc9f0c8d1b9c72adf45c37baedfcd949c35a2"}, ] +[[package]] +name = "scipy" +version = "1.9.3" +description = "Fundamental algorithms for scientific computing in Python" +category = "main" +optional = false +python-versions = ">=3.8" +files = [ + {file = "scipy-1.9.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:1884b66a54887e21addf9c16fb588720a8309a57b2e258ae1c7986d4444d3bc0"}, + {file = "scipy-1.9.3-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:83b89e9586c62e787f5012e8475fbb12185bafb996a03257e9675cd73d3736dd"}, + {file = "scipy-1.9.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1a72d885fa44247f92743fc20732ae55564ff2a519e8302fb7e18717c5355a8b"}, + {file = "scipy-1.9.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", 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"pytest-xdist", "scikit-umfpack", "threadpoolctl"] + [[package]] name = "setuptools" version = "65.6.3" @@ -1181,4 +1220,4 @@ testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools" [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "b8fd33efceb32c990f3008cbb495539720fc161f18e0fb8187eb53e429be2593" +content-hash = "94e23f95834fb2364566d660794d74b219f255378fb213a6c5b338e82fcfb3b2" diff --git a/pyproject.toml b/pyproject.toml index 77d5744..4daf24f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,6 +11,7 @@ click = "^8.1.3" numpy = "^1.23.0" numba = "^0.56.4" pendulum = "^2.1.2" +scipy = "^1.9.3" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" @@ -44,10 +45,9 @@ filterwarnings = [] # ---------------------------------------------------------------------------- # # https://pycqa.github.io/isort/docs/configuration/options.html # # ---------------------------------------------------------------------------- # -skip = ["external", ".tox"] profile = "black" -known_first_party = "eldritch" -src_paths = ["source/eldritch", "test_unit", "test_e2e"] +known_first_party = "cssfinder" +# src_paths = ["cssfinder", "tests"] line_length = 88 [tool.black] # ANCHOR: tool.black @@ -439,7 +439,7 @@ max-module-lines = 3000 # libraries. # known-standard-library = # Force import order to recognize a module as part of a third party library. -known-third-party = ["enchant"] +known-third-party = [] # Couples of modules and preferred modules, separated by a comma. # preferred-modules = From eb3ee0620e36b18f4798804995b9ad3f86af2caa Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 10:25:14 +0100 Subject: [PATCH 017/227] Add primitive scipt based IO implementation --- cssfinder/io.py | 64 +++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 64 insertions(+) diff --git a/cssfinder/io.py b/cssfinder/io.py index 3c4b38e..33b8649 100644 --- a/cssfinder/io.py +++ b/cssfinder/io.py @@ -1,6 +1,18 @@ """Program input/output utilities. """ +from __future__ import annotations + +from abc import ABC, abstractmethod +from pathlib import Path +from typing import Optional, Type + +import numpy as np +import scipy.io +from numpy.typing import NDArray + +from cssfinder.log import get_logger + def show_logo() -> None: """Print CSSFinder logo ASCII art.""" @@ -14,3 +26,55 @@ def show_logo() -> None: ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝ """ ) + + +class MatrixIO(ABC): + """Abstract base class declaring interface of matrix input-output manager.""" + + def __init__(self, file_path: Path) -> None: + self.file_path = file_path + + @classmethod + def new(cls, file_path: Path, file_format: Optional[str] = None) -> MatrixIO: + """Create new instance of matrix loader for file format. When format is + None, file format is deduced from file extension. + + Parameters + ---------- + file_path : Path + Path to file containing matrix data. + format : Optional[str], optional + File format specifier in form of extension, eg. ".mtx", by default None + + Returns + ------- + MatrixIO + Matrix loader. + """ + if file_format is None: + file_format = file_path.suffix + + logger = get_logger() + logger.debug( + "Using file format {!r} for file {}", file_format, file_path.as_posix() + ) + + return FORMAT_TO_LOADER[file_format](file_path) + + @abstractmethod + def load(self) -> NDArray[np.number]: + """Load matrix from file as numpy array.""" + + +class MatrixMarketIO(MatrixIO): + """MatrixIO implementation for loading MatrixMarket exchange format files.""" + + def load(self) -> NDArray[np.number]: + mtx = scipy.io.mmread(self.file_path.as_posix()) + assert mtx is not None + return np.array(mtx) + + +FORMAT_TO_LOADER: dict[str, Type[MatrixIO]] = { + ".mtx": MatrixMarketIO, +} From 05a3133faf95026b970f6e595bcb7f162eddf30e Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:02:11 +0100 Subject: [PATCH 018/227] Implement utitlity functions in ops.py module --- cssfinder/ops.py | 141 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 141 insertions(+) create mode 100644 cssfinder/ops.py diff --git a/cssfinder/ops.py b/cssfinder/ops.py new file mode 100644 index 0000000..cfd0f8e --- /dev/null +++ b/cssfinder/ops.py @@ -0,0 +1,141 @@ +from __future__ import annotations +import numpy as np +from numba import jit + +from cssfinder.types import MtxC128T + + +@jit(nopython=True, nogil=True, cache=True) +def product(mtx1: MtxC128T, mtx2: MtxC128T) -> float: + """Scalar product of two matrices.""" + k = np.trace(np.dot(mtx1, mtx2)) # matmul replaced with dot + return float(np.real(k)) + + +@jit(nopython=True, nogil=True, cache=True) +def outer_flatten(mtx: MtxC128T, mtx2: MtxC128T) -> MtxC128T: + """Outer product of two vectors.""" + return np.outer(mtx, mtx2).flatten() + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: MtxC128T) -> MtxC128T: + """Normalization of a vector.""" + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + return mtx / val # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar(size: int) -> MtxC128T: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, size) + imaginary = np.random.normal(0, 1, size) + return real + 1j * imaginary + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: MtxC128T) -> MtxC128T: + """Build a projection from a vector.""" + return np.outer(mtx1, np.conj(mtx1)) + + +@jit(nopython=True, nogil=True, cache=True) +def random_d_fs(size: int, sub_sys_size: int) -> MtxC128T: + """Random n quDit state.""" + vector = normalize(get_random_haar(size)) + + for _ in range(sub_sys_size - 1): + idx_vector = normalize(get_random_haar(size)) + vector = outer_flatten(vector, idx_vector) + + vector = project(vector) + return vector # type: ignore + + +# @jit(nopython=True, nogil=True, cache=True) +def optimize_d_fs( + rho2: MtxC128T, rho3: MtxC128T, size: int, sub_sys_size: int, epochs: int +) -> MtxC128T: + """Optimize implementation for FSQN mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(size, sub_sys_size, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + + idx_mod = idx % int(sub_sys_size) + unitary = random_unitary_d_fs(size, sub_sys_size, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2 + + +# @jit(nopython=True, nogil=True, cache=True) +def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MtxC128T: + """n quDits""" + real = np.cos(0.01 * np.pi) + imag = 1j * np.sin(0.01 * np.pi) + value = real + imag - 1 + + random_mtx = random_d_fs(size, 1) + identity_mtx = np.identity(size).astype(np.complex128) + value = np.add(np.multiply(value, random_mtx), identity_mtx) + + mtx = expand_d_fs(value, size, sub_sys_size, idx) + return mtx + + +# @jit(nopython=True, nogil=True, cache=True) +def expand_d_fs( # pylint: disable=invalid-name + value: MtxC128T, + size: int, + sub_sys_size: int, + idx: int, +) -> MtxC128T: + """Expand an operator to n quDits.""" + size_1 = int(size**idx) + identity_1 = np.identity(size_1).astype(np.complex128) + + size_2 = int(size ** (sub_sys_size - idx - 1)) + identity_2 = np.identity(size_2).astype(np.complex128) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + return kronecker_2 + +# @jit(nopython=True, nogil=True, cache=True) +def kronecker(mtx: MtxC128T, mtx1: MtxC128T) -> MtxC128T: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + tdot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(tdot_0_1, 1, 2) + + return out_mtx.reshape(output_shape) + + +@jit(nopython=True, nogil=True, cache=True) +def rotate(rho2: MtxC128T, unitary: MtxC128T) -> MtxC128T: + """Sandwich an operator with a unitary.""" + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + return rho2a # type: ignore From cd72b0e21d2a396e7f873fe9631a7b9a98dd7888 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:03:12 +0100 Subject: [PATCH 019/227] Add mode specific callbacks for optimization and random mtx generation --- cssfinder/modes.py | 66 ++++++++++++++++++++++++++++++++++++---------- 1 file changed, 52 insertions(+), 14 deletions(-) diff --git a/cssfinder/modes.py b/cssfinder/modes.py index 85f099d..719b05c 100644 --- a/cssfinder/modes.py +++ b/cssfinder/modes.py @@ -1,16 +1,19 @@ from __future__ import annotations + +import math from abc import ABC, abstractmethod from enum import Enum -import math -from typing import Type +from typing import Any, Type import numpy as np +from cssfinder import ops from cssfinder.log import get_logger +from cssfinder.types import MtxC128T, MtxT # fmt: off # pylint: disable=line-too-long -PRIMES = ( +PRIMES = np.array([ 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, @@ -39,11 +42,24 @@ 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, 1993, 1997, 1999, -) +], dtype=np.int64) # pylint: enable=line-too-long # fmt: on +class DataType(Enum): + """Type of data to use for output.""" + + COMPLEX = "complex" + """Return matrix of complex values.""" + + REAL = "real" + """Return matrix of real (floating point) values.""" + + INT = "int" + """Return matrix of integer values.""" + + class Mode(Enum): """List of possible execution modes.""" @@ -64,6 +80,8 @@ class Mode(Enum): class ModeABC(ABC): + """Abstract base class defining specialization of Gilbert algorithm.""" + @abstractmethod def detect_dims_none_given(self, total: int) -> tuple[int, int]: """Detect dimensions of system from loaded data matrix. @@ -112,41 +130,61 @@ def use(cls, mode: Mode) -> Type[ModeABC]: """ return MODE_MAP[mode] + @staticmethod + @abstractmethod + def optimize(*args: Any) -> MtxC128T: + """Implementation of optimization for specified mode.""" + + @staticmethod + @abstractmethod + def random(*args: Any) -> MtxC128T: + """Radom state for optimization.""" + class FSNQ(ModeABC): """Specific to FSNQ mode implementation of Gilbert algorithm related hooks.""" def detect_dims_none_given(self, total: int) -> tuple[int, int]: for prime in PRIMES: - sub_sys_count = int(math.log(total, prime)) + sub_sys_size = int(math.log(total, prime)) - if sub_sys_count == int(sub_sys_count): + if sub_sys_size == int(sub_sys_size): get_logger().debug( "Determined size: {} and number of subsystems: {}", prime, - sub_sys_count, + sub_sys_size, ) - return prime, sub_sys_count + return prime, sub_sys_size raise ValueError( "Couldn't determine size of system, prime number range exceeded." ) def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: - sub_sys_count = int(math.log(total, size)) + sub_sys_size = int(math.log(total, size)) - if sub_sys_count == int(sub_sys_count): + if sub_sys_size == int(sub_sys_size): get_logger().debug( "Determined size: {} and number of subsystems: {}", size, - sub_sys_count, + sub_sys_size, ) - return size, sub_sys_count + return size, sub_sys_size raise ValueError( - f"Couldn't determine size of system: {sub_sys_count} == " - f"{int(sub_sys_count)} is False.", + f"Couldn't determine size of system: {sub_sys_size} == " + f"{int(sub_sys_size)} is False.", ) + @staticmethod + def optimize(*args: Any) -> MtxC128T: + rho2, rho3, size, sub_sys_size, epochs = args + return ops.optimize_d_fs(rho2, rho3, size, sub_sys_size, epochs) + + @staticmethod + def random(*args: Any) -> MtxC128T: + size, sub_sys_size = args + return ops.random_d_fs(size, sub_sys_size) + MODE_MAP: dict[Mode, Type[ModeABC]] = {Mode.FSNQ: FSNQ} From 92ef295619f4933b96855a43344ed8b209b897da Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:03:44 +0100 Subject: [PATCH 020/227] Provide typing module for static typing of code --- cssfinder/types.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 cssfinder/types.py diff --git a/cssfinder/types.py b/cssfinder/types.py new file mode 100644 index 0000000..0c24391 --- /dev/null +++ b/cssfinder/types.py @@ -0,0 +1,14 @@ +from __future__ import annotations +from typing import TYPE_CHECKING + +import numpy.typing as npt +import numpy as np + +if TYPE_CHECKING: + from typing_extensions import TypeAlias + +DTypeT: TypeAlias = "np.int64 | np.float64 | np.complex128" + +MtxT: TypeAlias = npt.NDArray[DTypeT] + +MtxC128T: TypeAlias = npt.NDArray[np.complex128] From a80790f04b829e4d76465fa09d5b708aada1a17e Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:04:28 +0100 Subject: [PATCH 021/227] Extend Task class field set --- cssfinder/task.py | 39 ++++++++------------------------------- 1 file changed, 8 insertions(+), 31 deletions(-) diff --git a/cssfinder/task.py b/cssfinder/task.py index b05336d..b62ff0a 100644 --- a/cssfinder/task.py +++ b/cssfinder/task.py @@ -1,10 +1,10 @@ from __future__ import annotations + from dataclasses import dataclass from pathlib import Path from typing import Optional, Type, TypeVar -from cssfinder.modes import Mode - +from cssfinder.modes import DataType, Mode DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" @@ -25,7 +25,8 @@ class Task: output_dir: Path size: Optional[int] - sub_sys_count: Optional[int] + sub_sys_size: Optional[int] + data_type: DataType @classmethod def new( # pylint: disable=too-many-arguments @@ -37,7 +38,8 @@ def new( # pylint: disable=too-many-arguments input_dir: str | Path, output_dir: str | Path | None, size: int | None, - sub_sys_count: int | None, + sub_sys_size: int | None, + data_type: str | DataType, ) -> _TaskT: """Create new Task instance with automatic field data validation. @@ -69,7 +71,8 @@ def new( # pylint: disable=too-many-arguments Path(input_dir), Path(output_dir) if output_dir is not None else DEFAULT_TASK_OUT_DIR, size, - sub_sys_count, + sub_sys_size, + DataType(data_type), # type: ignore ) return instance @@ -87,29 +90,3 @@ def get_prefix(self) -> str: def get_input_file(self) -> Path: """Path to file containing input state.""" return self.input_dir / f"{self.get_prefix()}_in.mtx" - - def get_input_symmetry_files(self) -> list[Path]: - """Paths to all symmetry files.""" - # TODO implement - return [self.input_dir / f"{self.get_prefix()}_sym_0_0.mtx"] - - def get_input_projection_file(self) -> Path: - """Path to input projection file.""" - # TODO implement - return self.input_dir / f"{self.get_prefix()}_proj.mtx" - - def get_output_list_file(self) -> Path: - return ( - self.output_dir - / f"{self.get_prefix()}_list_{self.get_identifier_suffix()}.mtx" - ) - - def get_identifier_suffix(self) -> str: - """Suffix containing general description of configuration used for task.""" - return f"{self.mode.value}_{self.visibility}_{self.size}_{self.sub_sys_count}" - - def get_output_out_file(self) -> Path: - return ( - self.output_dir - / f"{self.get_prefix()}_out_{self.get_identifier_suffix()}.mtx" - ) From c37b882671cb08a9c7f4fccf0c67c455bd720fed Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:05:40 +0100 Subject: [PATCH 022/227] Change return type of MatrixIO.load() --- cssfinder/io.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/cssfinder/io.py b/cssfinder/io.py index 33b8649..09e05a0 100644 --- a/cssfinder/io.py +++ b/cssfinder/io.py @@ -9,9 +9,9 @@ import numpy as np import scipy.io -from numpy.typing import NDArray from cssfinder.log import get_logger +from cssfinder.types import MtxT def show_logo() -> None: @@ -62,14 +62,14 @@ def new(cls, file_path: Path, file_format: Optional[str] = None) -> MatrixIO: return FORMAT_TO_LOADER[file_format](file_path) @abstractmethod - def load(self) -> NDArray[np.number]: + def load(self) -> MtxT: """Load matrix from file as numpy array.""" class MatrixMarketIO(MatrixIO): """MatrixIO implementation for loading MatrixMarket exchange format files.""" - def load(self) -> NDArray[np.number]: + def load(self) -> MtxT: mtx = scipy.io.mmread(self.file_path.as_posix()) assert mtx is not None return np.array(mtx) From 7ab1a5d8a5eab40ebde3427cdd2300e8cb23e257 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:06:24 +0100 Subject: [PATCH 023/227] Add logging and size, sub_sys_size args to cli --- cssfinder/cli.py | 38 ++++++++++++++++++++++++++------------ 1 file changed, 26 insertions(+), 12 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index b8eeba6..ac6bcfb 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,12 +1,15 @@ from __future__ import annotations + from pathlib import Path from typing import Optional import click import pendulum + from cssfinder.api import run from cssfinder.io import show_logo from cssfinder.log import enable_logging, get_logger +from cssfinder.modes import DataType from cssfinder.task import Task @@ -70,10 +73,17 @@ ) @click.option( "-n", - "--sub-sys-number", + "--sub-sys-size", type=int, default=None, - help="Number of subsystems", + help="Size of each subsystems", +) +@click.option( + "-t", + "--type", + "data_type", + default="complex", + type=click.Choice(["complex", "real", "int"]), ) def main( # pylint: disable=too-many-arguments verbose: int, @@ -84,7 +94,8 @@ def main( # pylint: disable=too-many-arguments input_dir: str, output: Optional[str], size: Optional[str], - sub_sys_count: Optional[str], + sub_sys_size: Optional[str], + data_type: str, ) -> None: """ \b @@ -129,13 +140,15 @@ def main( # pylint: disable=too-many-arguments logger.info("CSSFinder started at {}", pendulum.now()) logger.debug("INPUT PARAMETERS") logger.debug("================") - logger.debug(" verbose = {0!r}", verbose) - logger.debug(" vis = {0!r}", vis) - logger.debug(" steps = {0!r}", steps) - logger.debug(" cors = {0!r}", cors) - logger.debug(" mode = {0!r}", mode) - logger.debug(" input = {0!r}", input_dir) - logger.debug(" output = {0!r}", output) + logger.debug(" verbose = {0!r}", verbose) + logger.debug(" vis = {0!r}", vis) + logger.debug(" steps = {0!r}", steps) + logger.debug(" cors = {0!r}", cors) + logger.debug(" mode = {0!r}", mode) + logger.debug(" input = {0!r}", input_dir) + logger.debug(" output = {0!r}", output) + logger.debug(" size = {0!r}", size) + logger.debug(" sub_sys_size = {0!r}", sub_sys_size) task = Task.new( mode=mode, @@ -144,7 +157,8 @@ def main( # pylint: disable=too-many-arguments correlations=cors, input_dir=input_dir, output_dir=output, - size=size, - sub_sys_count=sub_sys_count, + size=size if size is None else int(size), + sub_sys_size=sub_sys_size if sub_sys_size is None else int(sub_sys_size), + data_type=data_type, ) run(task) From 320dfc7eee7e31960d7f586fa0dd3636db0a3b79 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:07:25 +0100 Subject: [PATCH 024/227] Add missing glue code from api.py --- cssfinder/api.py | 58 ++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 58 insertions(+) diff --git a/cssfinder/api.py b/cssfinder/api.py index 139ef1a..a52ee78 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -1,5 +1,13 @@ +from __future__ import annotations + +import numpy as np +from numpy.typing import NDArray + +from cssfinder.gilbert import Gilbert +from cssfinder.io import MatrixIO from cssfinder.log import get_logger from cssfinder.task import Task +from cssfinder.types import MtxT def run(task: Task) -> None: @@ -13,3 +21,53 @@ def run(task: Task) -> None: logger = get_logger() logger.debug("Received new task ID {}", id(task)) logger.debug("{}", task.describe()) + + mtx = load_matrix(task) + + if is_real_only(mtx): + logger.warning( + "All values in initial state matrix are real, " + + "imaginary parts will be discarded." + ) + mtx = np.real(mtx) + + algorithm = Gilbert(task.mode, mtx, task.size, task.sub_sys_size) + algorithm.run(task.visibility, task.steps, task.correlations) + + +def load_matrix(task: Task) -> MtxT: + """Load matrix from task. + + Parameters + ---------- + task : Task + Task to load matrix for. + + Returns + ------- + _type_ + Loaded matrix. + """ + matrix_io = MatrixIO.new(task.get_input_file()) + mtx = matrix_io.load() + get_logger().debug("Loaded matrix; shape {!r} dtype {}", mtx.shape, mtx.dtype) + return mtx + + +def is_real_only(mtx: MtxT) -> bool: + """Check if matrix contains only real values. (Imaginary parts are all 0.) + + Parameters + ---------- + mtx : MtxT + Matrix to check. + + Returns + ------- + bool + True when no imaginary parts found. + """ + # Check if any value has imaginary part: + has_imaginary = np.imag(mtx).any() + # Return opposite; it means True when no imaginary parts found + return not has_imaginary From 235e1b032ccc97fa473a1d1e2b599872338a7f78 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:08:09 +0100 Subject: [PATCH 025/227] Reorder imports in log.py --- cssfinder/log.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/cssfinder/log.py b/cssfinder/log.py index 88eb19c..c132b3e 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -1,8 +1,9 @@ from __future__ import annotations + import logging import logging.handlers as handlers -from pathlib import Path import sys +from pathlib import Path from typing import Any, MutableMapping LOGGER: logging.Logger From 421f0f6d5fb2ffdc1e000d647302467d749a62e4 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 23 Dec 2022 19:09:17 +0100 Subject: [PATCH 026/227] Add sequential Gilbert algorithm implementation --- cssfinder/gilbert.py | 219 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 219 insertions(+) create mode 100644 cssfinder/gilbert.py diff --git a/cssfinder/gilbert.py b/cssfinder/gilbert.py new file mode 100644 index 0000000..6ea80de --- /dev/null +++ b/cssfinder/gilbert.py @@ -0,0 +1,219 @@ +from __future__ import annotations +from concurrent.futures import ThreadPoolExecutor +from dataclasses import dataclass +import logging +from time import perf_counter, sleep +from typing import Any, Optional +import numpy as np +from cssfinder import ops + +from cssfinder.log import get_logger +from cssfinder.modes import Mode, ModeABC +from cssfinder.types import MtxC128T, MtxT + + +class Gilbert: + """Gilbert algorithm implementation.""" + + def __init__( + self, + mode: Mode, + initial_state: MtxT, + size: Optional[int], + sub_sys_size: Optional[int], + ) -> None: + self.mode = ModeABC.use(mode)() + self.initial_state = initial_state + self.logger = get_logger() + + self.logger.debug("Created Gilbert algorithm using mode: {!r}", self.mode) + self.logger.debug( + "Using initial matrix: shape {!r} dtype {}", + self.initial_state.shape, + self.initial_state.dtype, + ) + + if sub_sys_size is None: + if size is None: + ( + self.size, + self.sub_sys_size, + ) = self.mode.detect_dims_none_given(self.total_system_size) + else: + ( + self.size, + self.sub_sys_size, + ) = self.mode.detect_dims_size_given(size, self.total_system_size) + + @property + def total_system_size(self) -> int: + """Total size of system determined from initial state first axis size.""" + return len(self.initial_state) + + def run(self, visibility: float, steps: int, correlations: int) -> None: + + total_sys_size = self.total_system_size + identity_mtx = np.identity(total_sys_size) + state = self.initial_state + inverse_visibility = np.subtract(1, visibility) + + rho = np.add( + np.multiply(visibility, state), + np.divide( + np.multiply(inverse_visibility, identity_mtx), + total_sys_size, + ), + ) + + start_time = perf_counter() + _gilbert( + rho.astype(np.complex128), + self.mode, + steps, + correlations, + self.size, + self.sub_sys_size, + 0.0000001, + ) + end_time = perf_counter() + logging.critical(f"Optimization took {end_time - start_time:.0f}s") + + +@dataclass +class Correlation: + + iter_left: int + found_at_iter: int + value: np.float64 + + +def _gilbert( + rho: MtxC128T, + mode: ModeABC, + steps: int, + correlations: int, + size: int, + sub_sys_size: int, + precision: float, + log_every_epochs: int = 5000, +) -> None: + + # executor = ThreadPoolExecutor(max_workers=4) + + logger = get_logger() + logger.debug("==================") + logger.debug(" _gilbert params:") + logger.debug("==================") + logger.debug(" mode = {}", mode) + logger.debug(" steps = {}", steps) + logger.debug(" correlations = {}", correlations) + logger.debug(" size = {}", size) + logger.debug(" sub_sys_size = {}", sub_sys_size) + logger.debug(" precision = {}", precision) + logger.debug("==================") + + _debug_msg_short_rho(True, 0, rho) + + rho1 = np.zeros_like(rho, dtype=np.complex128) + np.fill_diagonal(rho1, rho.diagonal()) + + _debug_msg_short_rho(True, 1, rho1) + + product_0_1 = ops.product(rho, rho1) + logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_0_1), product_0_1) + + product_1_1 = ops.product(rho1, rho1) + logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_1_1), product_1_1) + + rho3 = rho - rho1 + _debug_msg_short_rho(True, 3, rho3) + + product_1_3 = ops.product(rho1, rho3) + logger.debug("Product RHO1 RHO3 type: {} value: {}", type(product_1_3), product_1_3) + + optimization_epochs = 20 * size * size * sub_sys_size + + correlations_list: list[Correlation] = [] + idx = 0 + + limiter_product_1_3 = product_1_3 + logger.warning("Starting optimization...") + + for idx in range(steps): + is_log_iter = bool(idx % log_every_epochs == 0) + + if is_log_iter: + logger.debug("Optimization epoch: {}, product_1_3: {}", idx, product_1_3) + + if len(correlations_list) >= correlations: + return + + if correlations_list and correlations_list[-1].value <= precision: + return + + rho2 = mode.random(size, sub_sys_size) + _debug_msg_short_rho(is_log_iter, 2, rho2) + + product_2_3 = ops.product(rho2, rho3) + _debug_msg_product(is_log_iter, 2, 3, product_2_3) + _debug_msg_product(is_log_iter, 1, 3, limiter_product_1_3) + + if product_2_3 > limiter_product_1_3: + if is_log_iter: + logger.debug("Optimization epoch {}", product_2_3) + + rho2 = mode.optimize(rho2, rho3, size, sub_sys_size, optimization_epochs) + + product_0_2 = ops.product(rho, rho2) + _debug_msg_product(is_log_iter, 0, 2, product_0_2) + double_product_0_2 = 2 * product_0_2 + + product_1_2 = ops.product(rho1, rho2) + _debug_msg_product(is_log_iter, 1, 2, product_1_2) + double_product_1_2 = 2 * product_1_2 + + product_2_2 = ops.product(rho2, rho2) + _debug_msg_product(is_log_iter, 2, 2, product_2_2) + double_product_2_2 = 2 * product_2_2 + + bb2 = ( + -product_0_1 + + double_product_0_2 + + double_product_1_2 + - double_product_2_2 + ) + bb3 = product_1_1 - double_product_1_2 + product_2_2 + cc1 = -bb2 / (2 * bb3) + + if 0 < cc1 <= 1: + logger.debug(f"Altered statue with cc1 {cc1}") + rho1 = cc1 * rho1 + (1 - cc1) * rho2 + + rho3 = rho - rho1 + + product_1_1 = ops.product(rho1, rho1) + + product_1_3 = product_0_1 - product_1_1 + limiter_product_1_3 = product_1_3 + + double_product_0_1 = 2 * product_0_1 + product_0_1 = double_product_0_1 + + logger.warning("Finished optimization...") + # executor.__exit__(None, None, None) + + +def _debug_msg_product(is_log_iter: bool, x: int, y: int, prod: float) -> None: + if is_log_iter: + get_logger().debug("Product RHO{} RHO{}: {}, type: {}", x, y, prod, type(prod)) + + +def _debug_msg_short_rho(is_log_iter: bool, x: int, rho: Any) -> None: + if is_log_iter: + get_logger().debug( + "\n RHO{} type: {} shape: {} dtype: {}", + x, + type(rho), + rho.shape, + rho.dtype, + ) From cd25ba71b73a10f2e8110a135912b75218706baa Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 01:19:04 +0100 Subject: [PATCH 027/227] Add typing_extensions to dev dependencies --- poetry.lock | 2 +- pyproject.toml | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/poetry.lock b/poetry.lock index f24be7e..3d727e6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1220,4 +1220,4 @@ testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools" [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "94e23f95834fb2364566d660794d74b219f255378fb213a6c5b338e82fcfb3b2" +content-hash = "f8e3b7eb899408283fedd1b955fa9b7711f55b3d7511655c936e08a8bbf18c09" diff --git a/pyproject.toml b/pyproject.toml index 4daf24f..6847bfb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ pre-commit = "^2.20.0" pytest-cov = "^4.0.0" mypy = "^0.991" ptpython = "^3.0.22" +typing-extensions = "^4.4.0" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" From 8fb706bc6410ef8f9d7b11aae3017ab533c05b71 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 01:20:22 +0100 Subject: [PATCH 028/227] Fix bug causing code to not run --- cssfinder/gilbert.py | 28 +++++++++++++++++++--------- cssfinder/modes.py | 2 +- cssfinder/ops.py | 32 +++++++++++++++++++------------- cssfinder/types.py | 3 ++- 4 files changed, 41 insertions(+), 24 deletions(-) diff --git a/cssfinder/gilbert.py b/cssfinder/gilbert.py index 6ea80de..adc4c24 100644 --- a/cssfinder/gilbert.py +++ b/cssfinder/gilbert.py @@ -1,12 +1,14 @@ from __future__ import annotations -from concurrent.futures import ThreadPoolExecutor -from dataclasses import dataclass + import logging -from time import perf_counter, sleep +# from concurrent.futures import ThreadPoolExecutor +from dataclasses import dataclass +from time import perf_counter from typing import Any, Optional + import numpy as np -from cssfinder import ops +from cssfinder import ops from cssfinder.log import get_logger from cssfinder.modes import Mode, ModeABC from cssfinder.types import MtxC128T, MtxT @@ -119,15 +121,19 @@ def _gilbert( _debug_msg_short_rho(True, 1, rho1) + rho3 = rho - rho1 + _debug_msg_short_rho(True, 3, rho3) + + # product_0_1, product_1_1, product_1_3 = executor.map( + # ops.product, [rho, rho1, rho1], [rho1, rho1, rho3] + # ) + product_0_1 = ops.product(rho, rho1) logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_0_1), product_0_1) product_1_1 = ops.product(rho1, rho1) logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_1_1), product_1_1) - rho3 = rho - rho1 - _debug_msg_short_rho(True, 3, rho3) - product_1_3 = ops.product(rho1, rho3) logger.debug("Product RHO1 RHO3 type: {} value: {}", type(product_1_3), product_1_3) @@ -137,7 +143,7 @@ def _gilbert( idx = 0 limiter_product_1_3 = product_1_3 - logger.warning("Starting optimization...") + logger.info("Starting optimization...") for idx in range(steps): is_log_iter = bool(idx % log_every_epochs == 0) @@ -164,6 +170,10 @@ def _gilbert( rho2 = mode.optimize(rho2, rho3, size, sub_sys_size, optimization_epochs) + # product_0_2, product_1_2, product_2_2 = executor.map( + # ops.product, [rho, rho1, rho2], [rho2, rho2, rho2] + # ) + product_0_2 = ops.product(rho, rho2) _debug_msg_product(is_log_iter, 0, 2, product_0_2) double_product_0_2 = 2 * product_0_2 @@ -199,7 +209,7 @@ def _gilbert( double_product_0_1 = 2 * product_0_1 product_0_1 = double_product_0_1 - logger.warning("Finished optimization...") + logger.info("Finished optimization...") # executor.__exit__(None, None, None) diff --git a/cssfinder/modes.py b/cssfinder/modes.py index 719b05c..21976c0 100644 --- a/cssfinder/modes.py +++ b/cssfinder/modes.py @@ -6,8 +6,8 @@ from typing import Any, Type import numpy as np -from cssfinder import ops +from cssfinder import ops from cssfinder.log import get_logger from cssfinder.types import MtxC128T, MtxT diff --git a/cssfinder/ops.py b/cssfinder/ops.py index cfd0f8e..8e88ffc 100644 --- a/cssfinder/ops.py +++ b/cssfinder/ops.py @@ -1,4 +1,6 @@ from __future__ import annotations +from typing import cast + import numpy as np from numba import jit @@ -12,12 +14,6 @@ def product(mtx1: MtxC128T, mtx2: MtxC128T) -> float: return float(np.real(k)) -@jit(nopython=True, nogil=True, cache=True) -def outer_flatten(mtx: MtxC128T, mtx2: MtxC128T) -> MtxC128T: - """Outer product of two vectors.""" - return np.outer(mtx, mtx2).flatten() - - @jit(nopython=True, nogil=True, cache=True) def normalize(mtx: MtxC128T) -> MtxC128T: """Normalization of a vector.""" @@ -47,13 +43,14 @@ def random_d_fs(size: int, sub_sys_size: int) -> MtxC128T: for _ in range(sub_sys_size - 1): idx_vector = normalize(get_random_haar(size)) - vector = outer_flatten(vector, idx_vector) + vector = np.outer(vector, idx_vector).flatten() vector = project(vector) return vector # type: ignore # @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) def optimize_d_fs( rho2: MtxC128T, rho3: MtxC128T, size: int, sub_sys_size: int, epochs: int ) -> MtxC128T: @@ -87,8 +84,16 @@ def optimize_d_fs( # @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MtxC128T: """n quDits""" + value = _random_unitary_d_fs_val(size) + mtx = expand_d_fs(value, size, sub_sys_size, idx) + return mtx + + +@jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(size: int) -> MtxC128T: real = np.cos(0.01 * np.pi) imag = 1j * np.sin(0.01 * np.pi) value = real + imag - 1 @@ -96,12 +101,11 @@ def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MtxC128T: random_mtx = random_d_fs(size, 1) identity_mtx = np.identity(size).astype(np.complex128) value = np.add(np.multiply(value, random_mtx), identity_mtx) - - mtx = expand_d_fs(value, size, sub_sys_size, idx) - return mtx + return value # @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) def expand_d_fs( # pylint: disable=invalid-name value: MtxC128T, size: int, @@ -118,17 +122,19 @@ def expand_d_fs( # pylint: disable=invalid-name kronecker_1 = kronecker(identity_1, value) kronecker_2 = kronecker(kronecker_1, identity_2) - return kronecker_2 + return cast(MtxC128T, kronecker_2) + # @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) def kronecker(mtx: MtxC128T, mtx1: MtxC128T) -> MtxC128T: """Kronecker Product.""" ddd1 = len(mtx) ddd2 = len(mtx1) output_shape = (ddd1 * ddd2, ddd1 * ddd2) - tdot_0_1 = np.tensordot(mtx, mtx1, 0) - out_mtx = np.swapaxes(tdot_0_1, 1, 2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) return out_mtx.reshape(output_shape) diff --git a/cssfinder/types.py b/cssfinder/types.py index 0c24391..1005d69 100644 --- a/cssfinder/types.py +++ b/cssfinder/types.py @@ -1,8 +1,9 @@ from __future__ import annotations + from typing import TYPE_CHECKING -import numpy.typing as npt import numpy as np +import numpy.typing as npt if TYPE_CHECKING: from typing_extensions import TypeAlias From 17ba0b4c7a75cea3f7c861b8387511fc4ac74259 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 20:32:17 +0100 Subject: [PATCH 029/227] Add profiling utilities --- poetry.lock | 38 +- profiling/dataset_64_64/dataset_64_64_in.mtx | 4099 ++++++++++++++++++ profiling/fsqn_64_64.py | 23 + pyproject.toml | 1 + 4 files changed, 4160 insertions(+), 1 deletion(-) create mode 100644 profiling/dataset_64_64/dataset_64_64_in.mtx create mode 100644 profiling/fsqn_64_64.py diff --git a/poetry.lock b/poetry.lock index 3d727e6..5bcdf99 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1035,6 +1035,21 @@ files = [ {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"}, ] +[[package]] +name = "snakeviz" +version = "2.1.1" +description = "A web-based 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"--cors", + "2000", + ] + ) diff --git a/pyproject.toml b/pyproject.toml index 6847bfb..03766be 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,6 +25,7 @@ pytest-cov = "^4.0.0" mypy = "^0.991" ptpython = "^3.0.22" typing-extensions = "^4.4.0" +snakeviz = "^2.1.1" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" From 202e8730cac099a88e3af0ac9366a35580248ade Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 20:32:53 +0100 Subject: [PATCH 030/227] Add readme section about profiling --- .prettierignore | 10 ++++++++++ .prettierrc | 20 ++++++++++++++++++++ README.md | 26 ++++++++++++++++++++++---- 3 files changed, 52 insertions(+), 4 deletions(-) create mode 100644 .prettierignore create mode 100644 .prettierrc diff --git a/.prettierignore b/.prettierignore new file mode 100644 index 0000000..9ec5b97 --- /dev/null +++ b/.prettierignore @@ -0,0 +1,10 @@ +**/*.min.js +**/*min.css +/.tox +/.git +/.env +/.venv +/coverage +/dist +/.venv +**/data/* \ No newline at end of file diff --git a/.prettierrc b/.prettierrc new file mode 100644 index 0000000..c18b332 --- /dev/null +++ b/.prettierrc @@ -0,0 +1,20 @@ +{ + "semi": true, + "useTabs": false, + "endOfLine": "lf", + "printWidth": 79, + "overrides": [ + { + "files": ["*.html", "*.js", "*.json", "*.prettierrc"], + "options": { + "tabWidth": 4 + } + }, + { + "files": ["*.md"], + "options": { + "proseWrap": "always" + } + } + ] +} \ No newline at end of file diff --git a/README.md b/README.md index 30b89e8..830942f 100644 --- a/README.md +++ b/README.md @@ -15,15 +15,15 @@ Then run: poetry build --format=wheel ``` -Wheel file will be created: `dist/cssfinder-x.y.z-py3-none-any.whl`. -To install it, use pip: +Wheel file will be created: `dist/cssfinder-x.y.z-py3-none-any.whl`. To install +it, use pip: ``` pip install dist/cssfinder-x.y.z-py3-none-any.whl ``` -**Important**: Replace `x.y.z` with current version of CSSFinder. -You can find it in `pyproject.toml` file in root of repository. +**Important**: Replace `x.y.z` with current version of CSSFinder. You can find +it in `pyproject.toml` file in root of repository. ```toml [tool.poetry] @@ -31,3 +31,21 @@ You can find it in `pyproject.toml` file in root of repository. version = "x.y.z" # ... ``` + +## Profiling + +Performance profiling is done using dummy dataset from profiling directory. +Mentioned directory also contains `fsqn.py` which calls cssfinder machinery +with fixed set of params. + +To run simple profiling, You can use following command: + +``` +python -mcProfile -o cssf_64_64.prof profiling/fsqn_64_64.py +``` + +Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): + +``` +snakeviz cssf_64_64.prof +``` From e2bd98c879421dc9b3f552e4ebc0907737063c7c Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 20:35:31 +0100 Subject: [PATCH 031/227] Add .gitattributes with LF forced for all files --- .gitattributes | 1 + 1 file changed, 1 insertion(+) create mode 100644 .gitattributes diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..94f480d --- /dev/null +++ b/.gitattributes @@ -0,0 +1 @@ +* text=auto eol=lf \ No newline at end of file From 5a57edaa851730d95febfb2378050e9d543a372d Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sat, 24 Dec 2022 20:45:15 +0100 Subject: [PATCH 032/227] Make cssfinder only show logo in -vv (info) and -vvv (debug) modes --- cssfinder/cli.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index ac6bcfb..234b924 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,4 +1,5 @@ from __future__ import annotations +import logging from pathlib import Path from typing import Optional @@ -132,10 +133,12 @@ def main( # pylint: disable=too-many-arguments - prefix_abort.txt: The error message if the algorithm was extremely slow (for some highly entangled states). """ - show_logo() enable_logging(verbose) - logger = get_logger() + + if verbose >= 2: + show_logo() + # String formatting reference: https://peps.python.org/pep-3101/ logger.info("CSSFinder started at {}", pendulum.now()) logger.debug("INPUT PARAMETERS") From aeca7e8695673672375938709ad7e986a588d76f Mon Sep 17 00:00:00 2001 From: Argmaster Date: Mon, 23 Jan 2023 00:53:59 +0100 Subject: [PATCH 033/227] Add project file handling --- cssfinder/cli.py | 96 ++++++++++++++-- cssfinder/log.py | 7 +- cssfinder/project/__init__.py | 57 ++++++++++ cssfinder/project/base.py | 142 ++++++++++++++++++++++++ cssfinder/project/v1_0_0/__init__.py | 0 cssfinder/project/v1_0_0/cssfproject.py | 91 +++++++++++++++ 6 files changed, 380 insertions(+), 13 deletions(-) create mode 100644 cssfinder/project/__init__.py create mode 100644 cssfinder/project/base.py create mode 100644 cssfinder/project/v1_0_0/__init__.py create mode 100644 cssfinder/project/v1_0_0/cssfproject.py diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 234b924..ba527ab 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,6 +1,6 @@ from __future__ import annotations -import logging +import logging from pathlib import Path from typing import Optional @@ -10,11 +10,21 @@ from cssfinder.api import run from cssfinder.io import show_logo from cssfinder.log import enable_logging, get_logger -from cssfinder.modes import DataType +from cssfinder.project import ( + InvalidCSSFProjectContent, + MalformedProjectFileError, + load_project_from, +) +from cssfinder.project.base import ( + CSSFProjectFileMissingVersion, + CSSFProjectInvalidVersion, + CSSFProjectVersionNotSupported, + ProjectFormatTooOld, +) from cssfinder.task import Task -@click.command() +@click.group(invoke_without_command=True) @click.option( "-v", "--verbose", @@ -23,6 +33,76 @@ help="Control verbosity of logging, by default critical only, use " "-v, -vv, -vvv to gradually increase it.", ) +def main(verbose: int) -> None: + """CSSFinder is a script for finding closest separable states.""" + enable_logging(verbose) + logger = get_logger() + logger.info("CSSFinder started at {}", pendulum.now()) + + if verbose >= 2: + show_logo() + + +@main.command("project") +@click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) +def _project(path: str) -> None: + """Use project file to determine runtime configuration.""" + logger = get_logger() + + try: + project = load_project_from(path) + logger.info( + "Loaded project {0} by {1} <{2}>.", + project.meta.name, + project.meta.author, + project.meta.email, + ) + except FileNotFoundError as exc: + logger.critical("Project file not found.") + raise SystemExit(300_000) from exc + + except MalformedProjectFileError as exc: + logger.critical( + "Project file content is not a valid JSON file. Fix it and try again." + ) + raise SystemExit(301_000) from exc + + except InvalidCSSFProjectContent as exc: + logger.critical("Project file doesn't contain valid project configuration.") + logger.critical("Fix it and try again.") + raise SystemExit(302_000) from exc + + except ProjectFormatTooOld as exc: + logger.critical( + "Loaded project version ({0}) is too old to use it for execution.", exc.got + ) + logger.critical("At least version {0} is required.", exc.required) + raise SystemExit(303_000) from exc + + except CSSFProjectFileMissingVersion as exc: + logger.critical("Version field is missing in your {0!r} project file.", path) + raise SystemExit(400_000) from exc + + except CSSFProjectInvalidVersion as exc: + logger.critical( + "Malformed version string {0!r} is your {1!r} project file.", + exc.version, + path, + ) + raise SystemExit(401_000) from exc + + except CSSFProjectVersionNotSupported as exc: + logger.critical( + "Selected project file format version {0} is not supported.", exc.version + ) + raise SystemExit(402_000) from exc + + project.info_display() + + raise SystemExit(0) + + +@main.command() @click.argument( "mode", type=click.Choice(["FSNQ", "FSNQ+", "SBS", "G3PE3Q", "G4PE3Q"]), @@ -86,8 +166,7 @@ default="complex", type=click.Choice(["complex", "real", "int"]), ) -def main( # pylint: disable=too-many-arguments - verbose: int, +def file( # pylint: disable=too-many-arguments vis: float, steps: int, cors: int, @@ -133,14 +212,9 @@ def main( # pylint: disable=too-many-arguments - prefix_abort.txt: The error message if the algorithm was extremely slow (for some highly entangled states). """ - enable_logging(verbose) logger = get_logger() - if verbose >= 2: - show_logo() - # String formatting reference: https://peps.python.org/pep-3101/ - logger.info("CSSFinder started at {}", pendulum.now()) logger.debug("INPUT PARAMETERS") logger.debug("================") logger.debug(" verbose = {0!r}", verbose) @@ -151,7 +225,7 @@ def main( # pylint: disable=too-many-arguments logger.debug(" input = {0!r}", input_dir) logger.debug(" output = {0!r}", output) logger.debug(" size = {0!r}", size) - logger.debug(" sub_sys_size = {0!r}", sub_sys_size) + logger.debug(" sub_sys_size = {0!r}", sub_sys_size) task = Task.new( mode=mode, diff --git a/cssfinder/log.py b/cssfinder/log.py index c132b3e..a247c74 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -22,12 +22,15 @@ class _FormatStr: - def __init__(self, fmt: str, args: Any, kwargs: Any) -> None: + def __init__(self, fmt: str, args: Any, kwargs: MutableMapping[str, Any]) -> None: self.fmt = fmt self.args = args self.kwargs = kwargs def __str__(self) -> str: + disable_format = self.kwargs.get("extra", {}).get("disable_format", False) + if disable_format: + return self.fmt return str(self.fmt).format(*self.args, **self.kwargs) @@ -50,7 +53,7 @@ def process( return msg, { key: kwargs[key] for key in signature( - self.logger._log # pylint: disable=protected-access + self.logger._log # pylint: disable=protected-access ).parameters if key in kwargs } diff --git a/cssfinder/project/__init__.py b/cssfinder/project/__init__.py new file mode 100644 index 0000000..0b159e9 --- /dev/null +++ b/cssfinder/project/__init__.py @@ -0,0 +1,57 @@ +from __future__ import annotations + +import json +from pathlib import Path + +from cssfinder.log import get_logger +from cssfinder.project.v1_0_0.cssfproject import CSSFProjectV100 + + +def load_project_from(file_or_directory: str | Path) -> CSSFProjectV100: + """Load CSSFinder project in at least 1.0.0 version. + + Parameters + ---------- + file_or_directory : str | Path + Either project file (cssfproject.json) or directory containing project file. + + Returns + ------- + CSSFProjectV100 + Project information container. + + Raises + ------ + InvalidCSSFProjectContent + Raised when project file content is not a dictionary. + """ + logger = get_logger() + + # Unify path type to Path + file_or_directory = Path(file_or_directory).expanduser().resolve() + + # When points to directory, dir must contain cssfproject.json file + if file_or_directory.is_dir(): + file_or_directory /= "cssfproject.json" + + logger.debug(f"Resolved project path to {file_or_directory.as_posix()!r}") + + content = file_or_directory.read_text(encoding="utf-8") + try: + content = json.loads(content) + except json.JSONDecodeError as exc: + raise MalformedProjectFileError() from exc + + if not isinstance(content, dict): + logger.critical("Content of cssfproject.json file is not a dictionary.") + raise InvalidCSSFProjectContent(content) + + return CSSFProjectV100.new(content, file_or_directory) + + +class InvalidCSSFProjectContent(ValueError): + """Raised by load_from() when file content is not a dictionary.""" + + +class MalformedProjectFileError(ValueError): + """Rased when project file content can't be correctly decoded.""" diff --git a/cssfinder/project/base.py b/cssfinder/project/base.py new file mode 100644 index 0000000..f6c3671 --- /dev/null +++ b/cssfinder/project/base.py @@ -0,0 +1,142 @@ +from __future__ import annotations +import logging + +from pathlib import Path +from typing import Any, ClassVar, Optional, Type, TypeVar, cast + +from packaging.version import InvalidVersion, Version +from pydantic import BaseModel, Extra, validator +from pydantic.main import ModelMetaclass + +from cssfinder.log import get_logger + +CSSFPROJECT_CLS_INDEX: dict[Version, Type[CSSFProjectBase]] = {} + + +Self = TypeVar("Self", bound="CSSFProjectMeta") + + +class CSSFProjectMeta(ModelMetaclass): + """Metaclass used by all CSSFProject implementations.""" + + def __new__( + cls: type[Self], + name: str, + bases: tuple[type, ...], + namespace: dict[str, Any], + **kwargs: Any, + ) -> Self: + cssfproject = super().__new__(cls, name, bases, namespace, **kwargs) + CSSFPROJECT_CLS_INDEX[cssfproject.version] = cssfproject + + return cast(Self, cssfproject) + + +CSSFProjectBaseT = TypeVar("CSSFProjectBaseT", bound="CSSFProjectBase") + + +class CSSFProjectBase(BaseModel, metaclass=CSSFProjectMeta): + """Base class used by all CSSFProject implementations.""" + + version: ClassVar[Version] = Version("0.0.0") + """Project file format version.""" + + project_path: Optional[Path] + """Path to loaded project file.""" + + class Config: + validate_assignment = True + extra = Extra.ignore + + @validator("project_path") + @classmethod + def _path_resolve(cls, value: Path) -> Path: + if isinstance(value, Path): + value = value.expanduser().resolve() + + return value + + @classmethod + def new( + cls: Type[CSSFProjectBaseT], + data: dict[str, Any], + project_path: Optional[Path] = None, + ) -> CSSFProjectBaseT: + """Create new instance of CSSFProject of selected version. + + Parameters + ---------- + data : dict[str, Any] + data to feed into project class. + + Returns + ------- + CSSFProjectBase + instance of project. + + Raises + ------ + CSSFProjectFileMissingVersion + When version of project is not specified. + CSSFProjectInvalidVersion + When version string is malformed. + CSSFProjectVersionNotSupported + When version is not supported. + """ + try: + version_str = data.pop("version") + except KeyError as exc: + raise CSSFProjectFileMissingVersion() from exc + + try: + version = Version(version_str) + except InvalidVersion as exc: + raise CSSFProjectInvalidVersion(version_str) from exc + + if version not in CSSFPROJECT_CLS_INDEX: + raise CSSFProjectVersionNotSupported(version) + + project_cls = CSSFPROJECT_CLS_INDEX[version] + project = project_cls(**data, project_path=project_path) + + logger = get_logger() + logger.debug( + "Instantiated project class {0}.{1} from {2!r}", + project_cls.__module__, + project_cls.__qualname__, + project_path.as_posix() if project_path else project_path, + ) + + if project.version < cls.version: + raise ProjectFormatTooOld(project.version, cls.version) + + return cast(CSSFProjectBaseT, project) + + +class CSSFProjectFileMissingVersion(ValueError): + """Raised when "version" field is missing in cssfproject.json file.""" + + +class CSSFProjectInvalidVersion(InvalidVersion): + """Raised when "version" field contains invalid version string.""" + + def __init__(self, version: str) -> None: + super().__init__() + self.version = version + + +class CSSFProjectVersionNotSupported(InvalidVersion): + """Raised when version requested is not supported.""" + + def __init__(self, version: Version) -> None: + super().__init__() + self.version = version + + +class ProjectFormatTooOld(ValueError): + """Raised when project format is too old to perform requested task.""" + + def __init__(self, got: Version, required: Version) -> None: + super().__init__() + self.got = got + self.required = required diff --git a/cssfinder/project/v1_0_0/__init__.py b/cssfinder/project/v1_0_0/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/project/v1_0_0/cssfproject.py b/cssfinder/project/v1_0_0/cssfproject.py new file mode 100644 index 0000000..572349f --- /dev/null +++ b/cssfinder/project/v1_0_0/cssfproject.py @@ -0,0 +1,91 @@ +"""CSSFinder uses its own project format allowing for file based customization of +parameters used by gilbert algorithm. This file contains implementation of project +configuration in 1.0.0 version. +""" + + +from __future__ import annotations + +from typing import ClassVar, Optional + +from packaging.version import Version +from pydantic import BaseModel, ConstrainedStr, EmailStr +from cssfinder.log import get_logger + +from cssfinder.project.base import CSSFProjectBase + + +class CSSFProjectV100(CSSFProjectBase): + """CSSFProject file specification version 1.0.0""" + + version: ClassVar[Version] = Version("1.0.0") + """Project file format version.""" + + meta: Meta + """Project meta information like name and author.""" + + resources: Resources + """Resources used by project, including state matrices and other files.""" + + def info_display(self) -> None: + """Display configuration content.""" + logger = get_logger() + logger.info("\n" + self.json(indent=2), extra=dict(disable_format=True)) + +class Meta(BaseModel): + """Project meta information.""" + + author: str + """Author full name.""" + + email: EmailStr + """Author email address.""" + + name: str + """Name of the project.""" + + description: str + """Description of the project.""" + + version: SemVerStr + """Version of the project.""" + + +class SemVerStr(ConstrainedStr): + """Semantic versioning string regex, see https://semver.org/""" + + regex = ( + r"^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-]" + + r"[0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(" + + r"[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$" + ) + + +class Resources(BaseModel): + """Project resources.""" + + initial_state: State + """Path to file containing initial state matrix.""" + + symmetries: Optional[list[str]] + """List of paths to files containing symmetry matrices.""" + + projection: Optional[str] + """Path to file containing projection matrix.""" + + +class State(BaseModel): + """State configuration.""" + + file: str + """Path to file containing state matrix.""" + + depth: Optional[int] + """Depth of system, ie. (D)imensions in qu(D)it. (d)""" + + quantity: Optional[int] + """Quantity of systems. ie. number of qu(D)its in state. (n)""" + +Resources.update_forward_refs() +Meta.update_forward_refs() +CSSFProjectV100.update_forward_refs() From 7d4b92c8782e1c242ca0e28d8a9bb388f913361c Mon Sep 17 00:00:00 2001 From: Argmaster Date: Sun, 29 Jan 2023 18:32:03 +0100 Subject: [PATCH 034/227] Create framework for algorithm implementations --- .gitattributes | 2 +- .gitignore | 2 +- .pre-commit-config.yaml | 72 + .prettierignore | 2 +- .prettierrc | 2 +- 5qubits/cssfproject.json | 29 + README.md | 4 +- cssfinder/__init__.py | 1495 +---------------- cssfinder/algorithm/__init__.py | 0 cssfinder/algorithm/backend/__init__.py | 0 cssfinder/algorithm/backend/base.py | 72 + cssfinder/algorithm/backend/numpy/__init__.py | 31 + cssfinder/algorithm/backend/numpy/c128.py | 34 + cssfinder/algorithm/gilbert.py | 55 + cssfinder/api.py | 13 +- cssfinder/cli.py | 28 +- cssfinder/constants.py | 41 + cssfinder/gilbert.py | 229 --- cssfinder/io.py | 80 - cssfinder/io/__init__.py | 0 cssfinder/io/matrix.py | 68 + cssfinder/io/v1_0_0/__init__.py | 0 cssfinder/io/v1_0_0/asset_loader.py | 224 +++ cssfinder/log.py | 8 +- cssfinder/modes.py | 16 +- cssfinder/ops.py | 49 +- cssfinder/project/base.py | 33 +- cssfinder/project/v1_0_0/cssfproject.py | 148 +- cssfinder/types.py | 5 +- poetry.lock | 384 +++-- poetry.toml | 2 +- profiling/fsqn_64_64.py | 5 +- pyproject.toml | 5 +- 33 files changed, 1129 insertions(+), 2009 deletions(-) create mode 100644 .pre-commit-config.yaml create mode 100644 5qubits/cssfproject.json create mode 100644 cssfinder/algorithm/__init__.py create mode 100644 cssfinder/algorithm/backend/__init__.py create mode 100644 cssfinder/algorithm/backend/base.py create mode 100644 cssfinder/algorithm/backend/numpy/__init__.py create mode 100644 cssfinder/algorithm/backend/numpy/c128.py create mode 100644 cssfinder/algorithm/gilbert.py create mode 100644 cssfinder/constants.py delete mode 100644 cssfinder/gilbert.py delete mode 100644 cssfinder/io.py create mode 100644 cssfinder/io/__init__.py create mode 100644 cssfinder/io/matrix.py create mode 100644 cssfinder/io/v1_0_0/__init__.py create mode 100644 cssfinder/io/v1_0_0/asset_loader.py diff --git a/.gitattributes b/.gitattributes index 94f480d..6313b56 100644 --- a/.gitattributes +++ b/.gitattributes @@ -1 +1 @@ -* text=auto eol=lf \ No newline at end of file +* text=auto eol=lf diff --git a/.gitignore b/.gitignore index 249c065..4daf30d 100644 --- a/.gitignore +++ b/.gitignore @@ -940,4 +940,4 @@ build/ typechecking/ \#* \#*/ -*.env \ No newline at end of file +*.env diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..97c5f6c --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,72 @@ +exclude: '^(\.tox|\.env|dist|\.vscode)(/|$)' +repos: + - repo: https://github.com/PyCQA/autoflake + rev: "v2.0.0" + hooks: + - id: autoflake + args: + [ + --jobs, + "32", + --remove-all-unused-imports, + --in-place, + --expand-star-imports, + ] + + - repo: https://github.com/myint/docformatter + rev: "v1.5.1" + hooks: + - id: docformatter + args: + [--in-place, -r, --wrap-summaries, "88", --wrap-descriptions, "88"] + + - repo: https://github.com/pre-commit/mirrors-prettier + rev: "v2.7.1" + hooks: + - id: prettier + + - repo: https://github.com/timothycrosley/isort + rev: "5.12.0" + hooks: + - id: isort + + - repo: https://github.com/timothycrosley/isort + rev: "5.12.0" + hooks: + - id: isort + args: [-a, "from __future__ import annotations", cssfinder] + + - repo: https://github.com/ambv/black + rev: "22.12.0" + hooks: + - id: black + + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: "v4.4.0" + hooks: + - id: check-merge-conflict + args: [--assume-in-merge] + - id: check-case-conflict + - id: trailing-whitespace + - id: end-of-file-fixer + - id: debug-statements + - id: check-added-large-files + args: ["--maxkb=2000"] + - id: check-toml + # - id: check-json + - id: mixed-line-ending + args: ["--fix=lf"] + - id: trailing-whitespace + - id: debug-statements + + - repo: local + hooks: + - id: pylint + name: pylint + entry: pylint + language: system + types: [python] + args: [ + "-rn", # Only display messages + "-sn", # Don't display the score + ] diff --git a/.prettierignore b/.prettierignore index 9ec5b97..bb9edd6 100644 --- a/.prettierignore +++ b/.prettierignore @@ -7,4 +7,4 @@ /coverage /dist /.venv -**/data/* \ No newline at end of file +**/data/* diff --git a/.prettierrc b/.prettierrc index c18b332..e778ad4 100644 --- a/.prettierrc +++ b/.prettierrc @@ -17,4 +17,4 @@ } } ] -} \ No newline at end of file +} diff --git a/5qubits/cssfproject.json b/5qubits/cssfproject.json new file mode 100644 index 0000000..9a7c2a6 --- /dev/null +++ b/5qubits/cssfproject.json @@ -0,0 +1,29 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "5qubits", + "description": "Project description", + "version": "1.0.0" + }, + "resources": { + "initial_state": { + "file": "{project.directory}/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": null, + "projection": null + }, + "algorithm": { + "type": "Gilbert", + "mode": "FSnQd", + "backend": "numpy", + "precision": "complex128", + "visibility": 0.1, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + } +} diff --git a/README.md b/README.md index 830942f..97a8aee 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,6 @@ -# CSSFinder +
+

CSSFinder

+
## Building diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index c42f34a..cedad4a 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -1,1495 +1,6 @@ -# -*- coding: utf-8 -*- -""" -Created on Wed Jun 22 07:55:58 2022 -ver 1.1.0 -@author: wiesn -""" -from __future__ import annotations -from io import StringIO -from pathlib import Path - -import sys -from typing import Literal, TypeAlias, TypeVar -import numpy as np -import math -from numpy.typing import NDArray +"""CSSFinder (Closest Separable State Finder) is a package containing implementation of +Gilbert algorithm.""" -# import scipy.io -from datetime import datetime -from os.path import exists +from __future__ import annotations __version__ = "0.1.0" - -# fmt: off -PRIMES = ( - 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, - 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, 83, 89, - 97, 101, 103, 107, 109, 113, 127, 131, 137, 139, 149, 151, - 157, 163, 167, 173, 179, 181, 191, 193, 197, 199, 211, 223, - 227, 229, 233, 239, 241, 251, 257, 263, 269, 271, 277, 281, - 283, 293, 307, 311, 313, 317, 331, 337, 347, 349, 353, 359, - 367, 373, 379, 383, 389, 397, 401, 409, 419, 421, 431, 433, - 439, 443, 449, 457, 461, 463, 467, 479, 487, 491, 499, 503, - 509, 521, 523, 541, 547, 557, 563, 569, 571, 577, 587, 593, - 599, 601, 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, - 661, 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, - 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, 827, - 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, 907, 911, - 919, 929, 937, 941, 947, 953, 967, 971, 977, 983, 991, 997, - 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069, - 1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151, 1153, 1163, - 1171, 1181, 1187, 1193, 1201, 1213, 1217, 1223, 1229, 1231, 1237, 1249, - 1259, 1277, 1279, 1283, 1289, 1291, 1297, 1301, 1303, 1307, 1319, 1321, - 1327, 1361, 1367, 1373, 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, - 1447, 1451, 1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, - 1523, 1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, - 1607, 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, - 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, 1783, - 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, 1873, 1877, - 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, - 1993, 1997, 1999, -) -# fmt: on - -DTYPE: TypeAlias = np.complex64 - - -class MtxFn: - """Matrix functions.""" - - @staticmethod - def outer(p_1: NDArray[DTYPE], p_2: NDArray[DTYPE]) -> NDArray[DTYPE]: - """Outer product of two vectors.""" - return np.outer(np.array(p_1), np.array(p_2)).flatten() - - @staticmethod - def normalize(p: NDArray[DTYPE]) -> NDArray[DTYPE]: - """Normalization of a vector.""" - p_2 = np.dot(p, np.conj(p)) - p_2 = math.sqrt(np.real(p_2)) - return p / p_2 - - @staticmethod - def project(p_1: NDArray[DTYPE]) -> NDArray[DTYPE]: - """Build a projection from a vector.""" - return np.outer(np.array(p_1), np.conj(np.array(p_1))) - - @staticmethod - def product(mtx1: NDArray[DTYPE], mtx2: NDArray[DTYPE]): - """Scalar product of two matrices/""" - k = np.trace(np.matmul(mtx1, mtx2)) - return np.real(k) - - @staticmethod - def generate(size: int | tuple[int, ...]) -> NDArray[np.complex64]: - """Generate a random vector with Haar measure.""" - k_1 = np.random.normal(0, 1, size).astype(np.complex64) - k_2 = np.random.normal(0, 1, size).astype(np.complex64) - k_3 = k_1 + complex(0, 1) * k_2 - return k_3 - - @staticmethod - def ident_mtx(size: int) -> NDArray[np.complex64]: - """Return identity matrix""" - p_1 = np.zeros((int(size), int(size)), dtype=np.complex64) - np.fill_diagonal(p_1, 1) - return p_1 - - @staticmethod - def kronecker(p_1: NDArray[DTYPE], p_2: NDArray[DTYPE]) -> NDArray[DTYPE]: - """Kronecker Product.""" - ddd1 = len(p_1) - ddd2 = len(p_2) - p_3 = np.reshape( - np.swapaxes(np.tensordot(p_1, p_2, 0), 1, 2), - (ddd1 * ddd2, ddd1 * ddd2), - ) - return p_3 - - @staticmethod - def expand2FS( # pylint: disable=invalid-name - p_1: NDArray[DTYPE], n: int, j1: int - ) -> NDArray[DTYPE]: - """Expand an operator to n qubits.""" - return MtxFn.kronecker( - MtxFn.kronecker(MtxFn.ident_mtx(2**j1), p_1), - MtxFn.ident_mtx(2 ** (n - j1 - 1)), - ) - - @staticmethod - def expand_d_FS( # pylint: disable=invalid-name - p_1: NDArray[DTYPE], - d: int, - n: int, - j_1: int, - ) -> NDArray[DTYPE]: - """Expand an operator to n qubits.""" - return MtxFn.kronecker( - MtxFn.kronecker(MtxFn.ident_mtx(int(d**j_1)), p_1), - MtxFn.ident_mtx(int(d ** (n - j_1 - 1))), - ) - - @staticmethod - def rotate(rho2: NDArray[DTYPE], U: NDArray[DTYPE]) -> NDArray[DTYPE]: - """Sandwich an operator with a unitary.""" - rho2a = np.matmul(rho2, np.conj(U).T) - rho2a = np.matmul(U, rho2a) - return rho2a - - -# MTX file read and write -# [1]: 'matrix' 'vector' -# [2]: 'array' 'coordinate' -# [3]: 'integer' 'real' 'complex' 'pattern' -# [4]: 'general' 'symmetric' 'skew-symmetric' 'hermitian - - -class MtxIO: - """From and to file matrix serialization.""" - - @staticmethod - def get_number( - file: StringIO, vartype: Literal[0] | Literal[1] | Literal[2] - ) -> int | float | complex: - - readnum = file.readline() - - if vartype == 0: - return int(readnum) - - if vartype == 1: - return float(readnum) - - if vartype == 2: - readnum = readnum.split() - kreadnum = list(map(float, readnum)) - return kreadnum[0] + complex(0, 1) * kreadnum[1] - - raise AssertionError() - - @staticmethod - def get_3_numbers( - file: StringIO, vartype: Literal[0] | Literal[1] | Literal[2] - ) -> tuple[int, int, int | float | complex]: - - readnum = file.readline() - readnum = readnum.split() - - if vartype == 0: - return (int(readnum[0]), int(readnum[1]), int(readnum[2])) - - if vartype == 1: - return (int(readnum[0]), int(readnum[1]), float(readnum[2])) - - if vartype == 2: - return ( - int(readnum[0]), - int(readnum[1]), - float(readnum[2]) + complex(float(readnum[3])), - ) - - raise AssertionError() - - @staticmethod - def read_mtx(filename: str | Path) -> NDArray[DTYPE]: - """Read matrix data from file.""" - - with open(filename, "r") as file: - line = str(file.readline()) - firstline = line.split() - if firstline[1] == "matrix": - shape = 0 - elif firstline[1] == "vector": - shape = 1 - if firstline[2] == "array": - descr = 0 - elif firstline[2] == "coordinate": - descr = 1 - if firstline[3] == "integer": - vartype = 0 - elif firstline[3] == "real": - vartype = 1 - elif firstline[3] == "complex": - vartype = 2 - if firstline[4] == "general": - symtype = 0 - elif firstline[4] == "symmetric": - symtype = 1 - elif firstline[4] == "skew-symmetric": - symtype = 2 - elif firstline[4] == "hermitian": - symtype = 3 - while line[0] == "%" or len(line) == 1: - line = file.readline() - line = list(map(int, line.split())) - if shape == 0 and descr == 0: - rows = line[0] - cols = line[1] - if vartype == 0: - retval = np.zeros((rows, cols), dtype=int) - elif vartype == 1: - retval = np.zeros((rows, cols), dtype=float) - elif vartype == 2: - retval = np.zeros((rows, cols), dtype=complex) - if symtype == 0: - for i1 in range(cols): - for i2 in range(rows): - retval[i2][i1] = MtxIO.get_number(file, vartype) - elif symtype == 1 and rows == cols: - for i1 in range(cols): - for i2 in range(i1, rows): - retval[i2][i1] = MtxIO.get_number(file, vartype) - retval[i1][i2] = retval[i2][i1] - elif symtype == 2 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1 + 1, rows): - retval[i2][i1] = MtxIO.get_number(file, vartype) - retval[i1][i2] = -retval[i2][i1] - elif symtype == 3 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1, rows): - retval[i2][i1] = MtxIO.get_number(file, vartype) - retval[i1][i2] = np.conj(retval[i2][i1]) - if shape == 0 and descr == 1: - rows = line[0] - cols = line[1] - nonzeros = line[3] - if vartype == 0: - retval = np.zeros((cols, rows), dtype=int) - elif vartype == 1: - retval = np.zeros((cols, rows), dtype=float) - elif vartype == 2: - retval = np.zeros((cols, rows), dtype=complex) - for i1 in range(nonzeros): - entry = MtxIO.get_3_numbers(file, vartype) - retval[entry[1]][entry[0]] = entry[2] - if symtype == 1 and rows == cols: - for i1 in range(rows): - for i2 in range(i1, cols): - if np.abs(retval[i1][i2]) != 0: - retval[i2][i1] = retval[i1][i2] - else: - retval[i1][i2] = retval[i2][i1] - elif symtype == 2 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1 + 1, rows): - if np.abs(retval[i1][i2]) != 0: - retval[i2][i1] = -retval[i1][i2] - else: - retval[i1][i2] = -retval[i2][i1] - elif symtype == 3 and rows == cols: - for i1 in range(0, cols): - for i2 in range(i1, rows): - if np.abs(retval[i1][i2]) != 0: - retval[i2][i1] = np.conj(retval[i1][i2]) - else: - retval[i1][i2] = np.conj(retval[i2][i1]) - - return retval - - @staticmethod - def write_mtx(filename, lista, vartype): - if vartype == 1: - vartype1 = "real" - elif vartype == 2: - vartype1 = "complex" - elif vartype == 0: - vartype1 = "integer" - with open(filename, "w") as file: - file.write(" ".join(["%%MatrixMarket matrix array", vartype1, "general\n"])) - file.write("%Generated by CSSFinder\n") - file.write(str(len(lista))) - file.write(" ") - file.write(str(len(lista[0]))) - file.write("\n") - for i1 in range(len(lista[0])): - for i2 in range(len(lista)): - if vartype == 2: - file.write(str(np.real(lista[i2][i1]))) - file.write(" ") - file.write(str(np.imag(lista[i2][i1]))) - file.write("\n") - else: - file.write(str(lista[i2][i1])) - file.write("\n") - file.close() - - -# Random states: -# n qubit state -def Random2FS(n): - q1 = MtxFn.normalize(MtxFn.generate(2)) - if n > 1: - for l1 in range(n - 1): - q1 = MtxFn.outer(q1, MtxFn.normalize(MtxFn.generate(2))) - return MtxFn.project(q1) - - -# n quDit state -def RandomdFS(d, n): - q1 = MtxFn.normalize(MtxFn.generate(d)) - for l1 in range(n - 1): - q1 = MtxFn.outer(q1, MtxFn.normalize(MtxFn.generate(d))) - return MtxFn.project(q1) - - -# biseparable state -def RandomBS(d1, d2): - return MtxFn.project( - MtxFn.outer( - MtxFn.normalize(MtxFn.generate(d1)), MtxFn.normalize(MtxFn.generate(d2)) - ) - ) - - -# biseparable state with three quDits -def Random3P(d1, swaps, i): - if i == 0: - # aBC - return RandomBS(d1, d1 * d1) - if i == 1: - # AbC - return MtxFn.rotate(RandomBS(d1, d1 * d1), swaps[0]) - if i == 2: - # ABc - return RandomBS(d1 * d1, d1) - - -# biseparable for 4 quDits -def Random4P(d1, swaps, i): - if i == 0: - # aBCD - return RandomBS(d1, d1 * d1 * d1) - if i == 1: - # AbCD - return MtxFn.rotate(RandomBS(d1, d1 * d1 * d1), swaps[0]) - if i == 2: - # ABcD - return MtxFn.rotate(RandomBS(d1 * d1 * d1, d1), swaps[3]) - if i == 3: - # ABCd - return RandomBS(d1 * d1 * d1, d1) - if i == 4: - # abCD - return RandomBS(d1 * d1, d1 * d1) - if i == 5: - # aBcD - return MtxFn.rotate(RandomBS(d1 * d1, d1 * d1), swaps[2]) - if i == 6: - # aBCd - return MtxFn.rotate(RandomBS(d1 * d1, d1 * d1), swaps[1]) - - -# Rendom Unitaries -# Biseparability -def RandomUBS(a, d1, d2): - if a == 0: - rubsp1 = ( - math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * MtxFn.project(MtxFn.normalize(MtxFn.generate(d1))) + MtxFn.ident_mtx(d1) - return MtxFn.kronecker(rubsp1, MtxFn.ident_mtx(int(d2))) - if a == 1: - rubsp1 = ( - math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * MtxFn.project(MtxFn.normalize(MtxFn.generate(d2))) + MtxFn.ident_mtx(d2) - return MtxFn.kronecker(MtxFn.ident_mtx(int(d1)), rubsp1) - # return(Kronecker(IdMatrix(d1),unitatry_group.rvs(d2))) - - -# n qubits -def RandomU2FS(n, j): - # p1=unitary_group.rvs(2) - p1 = ( - math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * Random2FS(1) + MtxFn.ident_mtx(2) - return MtxFn.expand2FS(p1, n, j) - - -# n quDits -def RandomUdFS(d, n, j): - # p1=unitary_group.rvs(d) - p1 = ( - math.cos(0.01 * math.pi) + complex(0, 1) * math.sin(0.01 * math.pi) - 1 - ) * RandomdFS(d, 1) + MtxFn.ident_mtx(d) - return MtxFn.expand_d_FS(p1, d, n, j) - - -# Optimizers -# biseparability -def OptimizeBS(rho2, rho3, d1, d2): - pp1 = MtxFn.product(rho2, rho3) - for obsj1 in range(5 * d1 * d2): - U = RandomUBS(obsj1 % 2, d1, d2) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - return rho2a - - -# 3-partite entanglement -def Optimized3P(rho2, swaps, rho3, d1, i1): - if i1 == 0: - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**6): - U = RandomUBS(j1 % 2, d1, d1 * d1) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 1: - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**6): - U = MtxFn.rotate(RandomUBS(j1 % 2, d1, d1 * d1), swaps[0]) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 2: - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**6): - U = RandomUBS(j1 % 2, d1 * d1, d1) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - return rho2a - - -# four partite entanglement -# swap12,swap13,swap23,swap34 -def Optimized4P(rho2, rho3, swaps, d1, i1): - if i1 == 0: - # aBCD - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = RandomUBS(j1 % 2, d1, d1**3) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 1: - # AbCD - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = MtxFn.rotate(RandomUBS(j1 % 2, d1, d1 * d1 * d1), swaps[0]) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 2: - # ABcD - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = MtxFn.rotate(RandomUBS(j1 % 2, d1**3, d1), swaps[3]) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 3: - # ABCd - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = RandomUBS(j1 % 2, d1**3, d1) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 4: - # abCD - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = RandomUBS(j1 % 2, d1 * d1, d1 * d1) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 5: - # aBcD - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = MtxFn.rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[2]) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - if i1 == 6: - # aBCd - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(5 * d1**8): - U = MtxFn.rotate(RandomUBS(j1 % 2, d1 * d1, d1 * d1), swaps[1]) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - return rho2a - - -# n qubits -def Optimize2FS(rho2, rho3, n): - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(100 * n): - U = RandomU2FS(n, j1 % n) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - return rho2a - - -# n quDits -def OptimizedFS(rho2, rho3, ddd1, n): - pp1 = MtxFn.product(rho2, rho3) - for j1 in range(20 * ddd1 * ddd1 * n): - U = RandomUdFS(ddd1, n, j1 % n) - rho2a = MtxFn.rotate(rho2, U) - if pp1 > MtxFn.product(rho2a, rho3): - U = U.conj().T - rho2a = MtxFn.rotate(rho2, U) - while MtxFn.product(rho2a, rho3) > pp1: - rho2b = rho2a - pp1 = MtxFn.product(rho2b, rho3) - rho2a = MtxFn.rotate(rho2a, U) - return rho2a - - -# SWAP GATES at dimension d -def swap123(d): - temp = np.zeros((d**3, d**3), dtype=complex) - for i1 in range(d): - for i2 in range(d): - for i3 in range(d): - temp[i1 * d**2 + i2 * d + i3][i2 * d**2 + i1 * d + i3] = 1 - return temp - - -# def swap133(d): -# temp=np.zeros((d**3,d**3),dtype=complex) -# for i1 in range(d): -# for i2 in range(d): -# for i3 in range(d): -# temp[i1*d**2+i2*d+i3][i3*d**2+i2*d+i1]=1 -# return(temp) - -# def swap233(d): -# temp=np.zeros((d**3,d**3),dtype=complex) -# for i1 in range(d): -# for i2 in range(d): -# for i3 in range(d): -# temp[i1*d**2+i2*d+i3][i1*d**2+i3*d+i2]=1 -# return(temp) - - -def swap124(d): - temp = np.zeros((d**4, d**4), dtype=complex) - for i1 in range(d): - for i2 in range(d): - for i3 in range(d): - for i4 in range(d): - temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ - i2 * d**3 + i1 * d**2 + i3 * d + i4 - ] = 1 - return temp - - -def swap134(d): - temp = np.zeros((d**4, d**4), dtype=complex) - for i1 in range(d): - for i2 in range(d): - for i3 in range(d): - for i4 in range(d): - temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ - i3 * d**3 + i2 * d**2 + i1 * d + i4 - ] = 1 - return temp - - -# def swap144(d): -# temp=np.zeros((d**4,d**4),dtype=complex) -# for i1 in range(d): -# for i2 in range(d): -# for i3 in range(d): -# for i4 in range(d): -# temp[i1*d**3+i2*d**2+i3*d+i4][i4*d**3+i2*d**2+i3*d+i1]=1 -# return(temp) - - -def swap234(d): - temp = np.zeros((d**4, d**4), dtype=complex) - for i1 in range(d): - for i2 in range(d): - for i3 in range(d): - for i4 in range(d): - temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ - i1 * d**3 + i3 * d**2 + i2 * d + i4 - ] = 1 - return temp - - -# def swap244(d): -# temp=np.zeros((d**4,d**4),dtype=complex) -# for i1 in range(d): -# for i2 in range(d): -# for i3 in range(d): -# for i4 in range(d): -# temp[i1*d**3+i2*d**2+i3*d+i4][i1*d**3+i4*d**2+i3*d+i4]=1 -# return(temp) - - -def swap344(d): - temp = np.zeros((d**4, d**4), dtype=complex) - for i1 in range(d): - for i2 in range(d): - for i3 in range(d): - for i4 in range(d): - temp[i1 * d**3 + i2 * d**2 + i3 * d + i4][ - i1 * d**3 + i2 * d**2 + i4 * d + i3 - ] = 1 - return temp - - -# Initialize files -# read rho -def Initrho0(prefix): - # return(scipy.io.mmread("_".join([prefix,"in.mtx"]))) - return MtxIO.read_mtx("_".join([prefix, "in.mtx"])) - - -# read or generate rho1 -def Initrho1(prefix, rho, mode, d1, vis): - if exists("".join([prefix, "_out_", str(vis), ".mtx"])): - # return(scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"]))) - return MtxIO.read_mtx("".join([prefix, "_out_", str(vis), ".mtx"])) - elif exists( - "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ): - return MtxIO.read_mtx( - "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ) - else: - rhoa = np.zeros((len(rho), len(rho)), dtype=complex) - for j1 in range(len(rho)): - rhoa[j1][j1] = rho[j1][j1] - return rhoa - - -# Too slow convergence error -def tooslow(counter, prefix, vis): - with open( - "".join([prefix, "_abort_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]), - "w", - ) as file: - file.write("The program has done 10% of planned trails, but it found only ") - file.write(str(counter)) - file.write(" corrections and it was terminated.\n") - file.write("Increase the number of trails or decrease the visibility.\n") - file.close() - - -def showtooslow(): - if True: - print( - " ███▄ █ ▓█████ ██▒ █▓▓█████ ██▀███ ▄████ ██▓ ██▒ █▓▓█████ █ ██ ██▓███ " - ) - if True: - print( - " ██ ▀█ █ ▓█ ▀▓██░ █▒▓█ ▀ ▓██ ▒ ██▒ ██▒ ▀█▒▓██▒▓██░ █▒▓█ ▀ ██ ▓██▒▓██░ ██▒" - ) - print( - "▓██ ▀█ ██▒▒███ ▓██ █▒░▒███ ▓██ ░▄█ ▒ ▒██░▄▄▄░▒██▒ ▓██ █▒░▒███ ▓██ ▒██░▓██░ ██▓▒" - ) - print( - "▓██▒ ▐▌██▒▒▓█ ▄ ▒██ █░░▒▓█ ▄ ▒██▀▀█▄ ░▓█ ██▓░██░ ▒██ █░░▒▓█ ▄ ▓▓█ ░██░▒██▄█▓▒ ▒" - ) - print( - "▒██░ ▓██░░▒████▒ ▒▀█░ ░▒████▒░██▓ ▒██▒ ░▒▓███▀▒░██░ ▒▀█░ ░▒████▒ ▒▒█████▓ ▒██▒ ░ ░" - ) - if True: - print( - "░ ▒░ ▒ ▒ ░░ ▒░ ░ ░ ▐░ ░░ ▒░ ░░ ▒▓ ░▒▓░ ░▒ ▒ ░▓ ░ ▐░ ░░ ▒░ ░ ░▒▓▒ ▒ ▒ ▒▓▒░ ░ ░" - ) - print( - "░ ░░ ░ ▒░ ░ ░ ░ ░ ░░ ░ ░ ░ ░▒ ░ ▒░ ░ ░ ▒ ░ ░ ░░ ░ ░ ░ ░░▒░ ░ ░ ░▒ ░" - ) - print( - " ░ ░ ░ ░ ░░ ░ ░░ ░ ░ ░ ░ ▒ ░ ░░ ░ ░░░ ░ ░ ░░" - ) - print( - " ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░ ░" - ) - print(" ░ ░") - - -# Wrong dimension -def wrongdim(prefix, mode): - with open("".join([prefix, "_wrong_dim_.txt"]), "w") as file: - file.write("Dimension of the imput state not compatible with the declared mode") - file.close() - - -# Read symmetry transformations -def DefineSym(prefix): - symlist1 = [] - symlist2 = [] - symj1 = 0 - symj2 = 0 - if exists("_".join([prefix, "sym_0_0.mtx"])): - symflag = True - while exists("_".join([prefix, "sym", str(symj1), "0.mtx"])): - while exists("".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"])): - # symlist2.append(scipy.io.mmread("".join([prefix,"_sym_",str(symj1),"_",str(symj2),".mtx"]))) - symlist2.append( - MtxIO.read_mtx( - "".join([prefix, "_sym_", str(symj1), "_", str(symj2), ".mtx"]) - ) - ) - symj2 = symj2 + 1 - symj2 = 0 - symlist1.append(symlist2) - symj1 = symj1 + 1 - return symlist1 - - -# Apply symmetries to a state -def ApplySym(rho, symlist1): - asrho0 = rho - for asj1 in range(len(symlist1)): - for asj2 in range(len(symlist1[asj1])): - asrho0 = asrho0 + MtxFn.rotate(asrho0, symlist1[asj1][asj2]) - asrho0 = asrho0 / np.trace(asrho0) - return asrho0 - - -# Define projection -def DefineProj(projflag, prefix): - if exists("_".join([prefix, "proj", ".mtx"])): - projflag = True - # return(scipy.io.mmread("_".join([prefix,"proj.mtx"]))) - return MtxIO.read_mtx("_".join([prefix, "proj.mtx"])) - else: - return [[]] - - -# Gilbert algorithm -def Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag): - rho1 = Initrho1(prefix, rho, mode, d1, vis) - symflag = False - symlist = DefineSym(prefix) - if len(symlist) > 0: - symflag = True - print(len(symlist)) - projflag = False - proj1 = DefineProj(projflag, prefix) - # if symflag==True: - # rho1=ApplySym(rho1, symlist) - if projflag == True: - rho1 = MtxFn.rotate(rho1, proj1) - lastcorr = 0 - currentcorr = 0 - ll = [] - counter = 0 - flag = 0 - trail = 0 - if exists("".join([prefix, "_list_", str(vis), ".mtx"])) and exists( - "".join([prefix, "_out_", str(vis), ".mtx"]) - ): - # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2 = MtxIO.read_mtx("".join([prefix, "_list_", str(vis), ".mtx"])) - trail = int(ll2[len(ll2) - 1][0]) - counter = int(ll2[len(ll2) - 1][1]) - for i3 in range(len(ll2)): - ll.append([int(ll2[i3][0]), int(ll2[i3][1]), ll2[i3][2]]) - if len(ll) == 1: - currentcorr = ll[0][0] - elif len(ll) > 1: - currentcorr = ll[len(ll) - 1][0] - lastcorr = ll[len(ll) - 2][0] - if exists( - "".join([prefix, "_list_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ) and exists( - "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ): - # ll2=scipy.io.mmread("".join([prefix,"_list_",str(vis),".mtx"])) - ll2 = MtxIO.read_mtx( - "".join([prefix, "_list_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ) - trail = int(ll2[len(ll2) - 1][0]) - counter = int(ll2[len(ll2) - 1][1]) - for i3 in range(len(ll2)): - ll.append([int(ll2[i3][0]), int(ll2[i3][1]), ll2[i3][2]]) - if len(ll) == 1: - currentcorr = ll[0][0] - elif len(ll) > 1: - currentcorr = ll[len(ll) - 1][0] - lastcorr = ll[len(ll) - 2][0] - if steps < 0: - steps = trail - steps - steps = steps - steps % 10 - if corrs < 0: - corrs = counter - corrs - corrs = corrs - corrs % 50 - now = datetime.now() - if verboseflag == True: - print( - now.strftime("%d/%m/%Y %H:%M:%S"), - " Report: proceeding with", - abs(steps) - trail, - " iterations and ", - abs(corrs) - counter, - " corrections.", - ) - realflag = True - for realcheck1 in range(len(rho)): - for realcheck2 in range(len(rho)): - if np.imag(rho[realcheck1][realcheck2]) != 0: - realflag = False - break - if realflag == True and verboseflag == True: - print("\n") - print( - "Input state strictly real. Imaginary parts of the output state will be discarded" - ) - aa1 = MtxFn.product(rho, rho) - aa4 = 2 * MtxFn.product(rho, rho1) - aa6 = MtxFn.product(rho1, rho1) - rho3 = rho - rho1 - dd1 = MtxFn.product(rho1, rho3) - if mode == 3: - swaps = [swap123(d1)] - elif mode == 4: - swaps = [swap124(d1), swap134(d1), swap234(d1), swap344(d1)] - # else: - # swaps=[] - if len(ll) == 0 or ll[len(ll) - 1][2] > 0.000001: - carryonflag = True - else: - carryonflag = False - while ( - trail <= abs(steps) - and counter <= abs(corrs) - and (len(ll) == 0 or ll[len(ll) - 1][2] > 0.0000001) - ): - trail = trail + 1 - if currentcorr - lastcorr > (steps - trail): - if verboseflag == True: - print("Too few steps left. Quitting") - break - if divmod(10 * trail / abs(steps), 1)[1] == 0: - if counter < 50: - tooslow(counter, prefix, vis) - if verboseflag == True: - showtooslow() - break - now = datetime.now() - if verboseflag == True: - print( - now.strftime("%d/%m/%Y %H:%M:%S"), - " Report: done", - trail, - "/", - abs(steps), - ) - # if mode==0: - # rho2=Random2FS(d1) - if mode == 2: - rho2 = RandomBS(d1, d2) - if mode == 1: - rho2 = RandomdFS(d1, d2) - if mode == 3: - rho2 = Random3P(d1, swaps, trail % 3) - if mode == 4: - rho2 = Random4P(d1, swaps, trail % 7) - if not (mode in range(1, 5)): - if verboseflag == True: - print("Mode ", mode, "does not exist!") - DisplayHelp() - break - if MtxFn.product(rho2, rho3) > dd1: - # if mode==0: - # rho2=Optimize2FS(rho2, rho3, d1) - if mode == 2: - rho2 = OptimizeBS(rho2, rho3, d1, d2) - if mode == 1: - rho2 = OptimizedFS(rho2, rho3, d1, d2) - if mode == 3: - rho2 = Optimized3P(rho2, swaps, rho3, d1, trail % 3) - if mode == 4: - rho2 = Optimized4P(rho2, rho3, swaps, d1, trail % 7) - if realflag == True: - rho2 = np.real(rho2) - if symflag == True: - rho1 = ApplySym(rho1, symlist) - if projflag == True: - rho1 = MtxFn.rotate(rho1, proj1) - rho1 = rho1 / np.trace(rho1) - aa3 = MtxFn.product(rho2, rho2) - aa2 = 2 * MtxFn.product(rho, rho2) - aa5 = 2 * MtxFn.product(rho1, rho2) - # bb1=aa1-aa2+aa3 - bb2 = -aa4 + aa2 + aa5 - 2 * aa3 - bb3 = aa6 - aa5 + aa3 - cc1 = -bb2 / (2 * bb3) - # cc2=-bb2*bb2/(4*bb3)+bb1 - if 0 <= cc1 and cc1 <= 1: - rho1 = cc1 * rho1 + (1 - cc1) * rho2 - if symflag == True and counter % 50 == 0: - rho1 = ApplySym(rho1, symlist) - counter = counter + 1 - if counter % 2 == 0 and verboseflag == True: - marker = counter % 50 - print(marker, end=" ") - if marker == 0: - print("") - # if marker in [2,4,6,8]: - # # print("\b",end="") - # # print("\b",end="") - # # print("",end="") - # print(marker,end=" ") - # elif marker==0: - # print("") - # # print("\b",end="") - # # print("\b",end="") - # else: - # # print("\b",end="") - # # print("\b",end="") - # print(marker,end=" ") - rho3 = rho - rho1 - aa4 = 2 * MtxFn.product(rho, rho1) - aa6 = MtxFn.product(rho1, rho1) - dd1 = aa4 / 2 - aa6 - flag = 1 - if 0 > cc1 or cc1 > 1: - flag = 0 - if counter % 50 == 0 and flag == 1: - if verboseflag == True: - now = datetime.now() - print( - now.strftime("%H:%M:%S: "), - "Trails:", - trail, - " Corrections:", - counter, - "D^2:", - MtxFn.product(rho3, rho3), - ) - ll.append([trail, counter, MtxFn.product(rho3, rho3)]) - # scipy.io.mmwrite("".join([prefix,"_out_",str(vis),".mtx"]),rho1) - MtxIO.write_mtx( - "".join( - [ - prefix, - "_out_", - str(mode), - "_", - str(d1), - "_", - str(vis), - ".mtx", - ] - ), - rho1, - 2, - ) - # scipy.io.mmwrite("".join([prefix,"_list_",str(vis),".mtx"]),ll) - MtxIO.write_mtx( - "".join( - [ - prefix, - "_list_", - str(mode), - "_", - str(d1), - "_", - str(vis), - ".mtx", - ] - ), - ll, - 1, - ) - lastcorr = currentcorr - currentcorr = trail - return ll - - -def invert(c, a): - return 1 / (c - a) - - -def mean(l): - return sum(l) / len(l) - - -def R(l, a): - ll1 = list(map(lambda x1: invert(x1, a), l)) - return ( - mean(list(map(lambda x1, x2: x1 * x2, ll1, list(range(len(l)))))) - - mean(ll1) * mean(list(range(len(l)))) - ) / math.sqrt( - (mean(list(map(lambda x: x**2, ll1))) - mean(ll1) ** 2) - * ( - mean(list(map(lambda x: x**2, list(range(len(l)))))) - - mean(list(range(len(l)))) ** 2 - ) - ) - - -def listshift(l1, a1): - return list(map(lambda x: x - a1, l1)) - - -def cov(l1, l2): - return mean( - list( - map( - lambda x1, x2: x1 * x2, listshift(l1, mean(l1)), listshift(l2, mean(l2)) - ) - ) - ) - - -def trend(l1, l2): - l1a = list(map(lambda x: math.log(x), l1)) - l2a = list(map(lambda x: math.log(x), l2)) - return cov(l1a, l2a) / cov(l1a, l1a) - - -def offset(l1, l2): - l1a = list(map(lambda x: math.log(x), l1)) - l2a = list(map(lambda x: math.log(x), l2)) - return mean(l2a) - mean(l1a) * trend(l1, l2) - - -def findmaximum(ll): - list1 = list(map(lambda x: x[2], ll)) - list2 = [] - for j1 in range(int(len(list1) / 2), len(list1)): - list2.append(list1[j1]) - aaa1 = list2[len(list2) - 1] - 0.000001 - step1 = aaa1 / 10000 - while R(list2, aaa1 - step1) > R(list2, aaa1) and aaa1 > 0: - aaa1 = aaa1 - step1 - return aaa1 - - -def makeshortreport(prefix, ll, mode, d1, vis): - ll10 = list(map(lambda x: x[0], ll)) - ll11 = list(map(lambda x: x[1], ll)) - kk = findmaximum(ll) - ll12 = [] - for j1 in range(int(2 * len(ll) / 3), len(ll)): - ll12.append(ll[j1][2]) - with open( - "".join([prefix, "_report_", str(mode), "_", str(d1), "_", str(vis), ".txt"]), - "w", - ) as file: - file.write("Basing on decay, the squared HS distance is estimsated to be ") - file.write(str(kk)) - file.write(" (R=") - file.write(str(R(ll12, kk))) - file.write(")\n") - file.write("The dependence between corrs and trail is approximately:\n") - file.write("corr=trail^") - file.write(str(trend(ll10, ll11))) - file.write("*") - file.write(str(math.exp(offset(ll10, ll11)))) - file.write("\n-----------------\n") - file.close() - - -def makelongreport(prefix, mode, vis, swaps, d1, d2, ll, verboseflag): - # optw=OptimizeW(prefix, mode, vis, swaps, d1, d2,verboseflag) - # wdist0=WitnessDist(prefix, vis, optw,verboseflag) - # with open("".join([prefix,"_report_",str(vis),".txt"]),'a') as file: - # if wdist0==-2: - # file.write("The algorithm did not yield a valid entanglement witness.") - # else: - # file.write("The squared distance based on entanglement witness is ") - # file.write(str(wdist0)) - # file.close() - rhoa = MtxIO.read_mtx("".join([prefix, "_in.mtx"])) - # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob = MtxIO.read_mtx( - "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ) - rhoa = vis * rhoa + (1 - vis) * MtxFn.ident_mtx(len(rhoa)) / len(rhoa) - witness = rhoa - rhob - MtxIO.write_mtx( - "".join([prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]), - witness, - 2, - ) - - -def OptimizeW(prefix, mode, vis, swaps, d1, d2, verboseflag): - l = -1 - # rhoa=scipy.io.mmread("_".join([prefix,"in.mtx"])) - rhoa = MtxIO.read_mtx("_".join([prefix, "in.mtx"])) - rhob = Initrho1(prefix, rhoa, vis) - witness = rhoa - rhob - # zasieg=1000*d1 - if mode == 2: - zasieg = 1500 - if mode == 1: - zasieg = 1500 - if mode == 3: - zasieg = 1500 - if mode == 4: - zasieg = 1500 - if verboseflag == True: - print("Optimizing the potential witness operator. Number of trails:", zasieg) - for owi1 in range(zasieg): - # if mode==0: - # w1=Random2FS(d1) - # l.append(Optimize2FS(w1,witness, d1)) - if owi1 % 100 == 0 and verboseflag: - print("trail:", owi1) - if mode == 2: - w1 = RandomBS(d1, d2) - rho2a = OptimizeBS(w1, witness, d1, d2) - l1 = MtxFn.product(rho2a, witness) - if l1 > l: - l = l1 - if mode == 1: - w1 = RandomdFS(d1, d2) - rho2a = OptimizedFS(w1, witness, d1, d2) - l1 = MtxFn.product(rho2a, witness) - if l1 > l: - l = l1 - if mode == 3: - for owi2 in range(3): - w1 = Random3P(d1, swaps[0], owi2) - rho2a = Optimize2FS(w1, witness, d1) - l1 = MtxFn.product(rho2a, witness) - if l1 > l: - l = l1 - if mode == 4: - for owi2 in range(7): - w1 = Random4P(d1, swaps[0], swaps[1], swaps[2], swaps[3], owi2) - rho2a = Optimize2FS(w1, witness, d1) - l1 = MtxFn.product(rho2a, witness) - if l1 > l: - l = l1 - return l - - -def WitnessDist(prefix, vis, sepmax, verboseflag): - # rhoa=scipy.io.mmread("".join([prefix,"_in.mtx"])) - rhoa = MtxIO.read_mtx("".join([prefix, "_in.mtx"])) - # rhob=scipy.io.mmread("".join([prefix,"_out_",str(vis),".mtx"])) - rhob = MtxIO.read_mtx( - "".join([prefix, "_out_", str(mode), "_", str(d1), "_", str(vis), ".mtx"]) - ) - rhoa = vis * rhoa + (1 - vis) * MtxFn.ident_mtx(len(rhoa)) / len(rhoa) - witness = rhoa - rhob - wdist = (MtxFn.product(witness, rhoa) - sepmax) / math.sqrt( - MtxFn.product(witness, witness) - ) - if wdist < 0: - if verboseflag == True: - print("No entanglement witness found.") - else: - if verboseflag == True: - print( - "Witness-based estimated squared distance:", wdist**2, " (VERIFY!!!)" - ) - # scipy.io.mmwrite("".join([prefix,"_witness_",str(vis),".mtx"]),witness,"".join(["Estimated sqared distance:",str(wdist**2)])) - MtxIO.write_mtx( - "".join( - [prefix, "_witness_", str(mode), "_", str(d1), "_", str(vis), ".mtx"] - ), - witness, - 2, - ) - return wdist**2 - - -def DetectDim0(mode, totaldim, verboseflag): - primes = PRIMES - ddflag = False - if mode == 1: - for pr in primes: - if math.log(totaldim, pr) == int(math.log(totaldim, pr)): - if verboseflag == True: - print( - "Determined size: ", - pr, - " number of subsystems:", - int(math.log(totaldim, pr)), - ) - return [pr, int(math.log(totaldim, pr))] - ddflag = True - break - elif mode == 2: - if math.sqrt(totaldim) == int(math.sqrt(totaldim)): - pr = int(math.sqrt(totaldim)) - if verboseflag == True: - print("Determined sizes of subsytems: ", pr, int(totaldim / pr)) - return [int(math.sqrt(totaldim)), int(math.sqrt(totaldim))] - ddflag = True - else: - for pr in primes: - if totaldim % pr == 0: - if verboseflag == True: - print("Determined sizes of subsytems: ", pr, int(totaldim / pr)) - return [pr, int(totaldim / pr)] - ddflag = True - break - elif mode == 3: - if totaldim ** (1.0 / 3) == int(totaldim ** (1.0 / 3)): - if verboseflag == True: - print( - "Determined size: ", - int(totaldim ** (1.0 / 3)), - " number of subsystems:", - 3, - ) - return [int(totaldim ** (1.0 / 3)), 3] - ddflag = True - elif mode == 4: - if totaldim ** (1.0 / 4) == int(totaldim ** (1.0 / 4)): - if verboseflag == True: - print( - "Determined size: ", - int(totaldim ** (1.0 / 4)), - " number of subsystems:", - 4, - ) - return [int(totaldim ** (1.0 / 4)), 4] - ddflag = True - if ddflag == False: - return [0, 0] - - -def DetectDim1(mode, totdim, d1, verboseflag): - ddflag = False - if mode == 1: - if math.log(totdim, d1) == int(math.log(totdim, d1)): - ddflag == True - if verboseflag == True: - print( - "Determined size: ", - d1, - " number of subsystems:", - int(math.log(totdim, d1)), - ) - return int(math.log(totdim, d1)) - elif mode == 2: - if totdim / d1 == int(totdim / d1): - ddflag == True - if verboseflag == True: - print("Determined sizes", d1, ", ", int(totdim / d1)) - return int(totdim / d1) - elif mode == 3: - if d1**3 == totdim: - ddflag == True - return 3 - elif mode == 4: - if d1**4 == totdim: - ddflag == True - return 4 - if ddflag == False: - return 0 - - -def DisplayHelp(): - print("CSSFinder mode verbose prefix vis steps corrs d1") - print( - "mode=0: full separability of an n-qubit state(d1 optional and can be arbitrary)" - ) - print("mode=1: full separability of an n-quDit state") - print("mode=2: separability of a bipirtite state") - print("mode=3: genuine 3-partite entaglement of a 3-quDit state") - print("mode=4: genuine 4-partite entaglement of a 3-quDit state") - print("verbose=0: supress on-screen ouptut") - print("verbose=1: show on-screen messages and reports") - print("prefix: prefix of all used prefixs") - print( - "vis: visibility against white noise. Between 0 and 1. To be used when the algorithm is stuck" - ) - print( - "steps: number of attemps to correct the closest separable state. A negative number adds its value to pre-existing list of results" - ) - print("steps are rounded down to a multiple of 10") - print( - "corrs: the maximal number of corrections to the closest separable state. A negative number adds its value to pre-existing list of results." - ) - print("corrs are rounded down to a multiple of 50") - print( - "d1: the dimenssion of the first subsystem. Dimension of the other subsystem or the number of parties is deduced from the dimension of the input state." - ) - print("Input:") - print("prefix_in.mtx: the input state in MTX format") - print( - "prefix_sym_0_0.mtx,prefix_sym_0_1.mtx,...: symmetry unitaries applied to the output state in MTX format. The first number is the symmetry label, the second is the manifold. Optional" - ) - print( - "prefix_proj.mtx,prefix_sym_0_1.mtx,...: projectionsapplied to the output state in MTX format. Optional" - ) - print("Output:") - print( - "prefix_mode_d1_out_vis.mtx: final sepa rable state (can be used as an initial separable state)" - ) - print( - "prefix_mode_d1_list_vis.mtx: number of steps, corrections, and the squared HS distance every 50 corrections" - ) - print("If these files exist, the program will resume from the last record") - print("prefix_report_mode_d1_vis.txt: The report file.") - # print("prefix_witness_mode_d1_vis.txt: entanglement witness candidate. Consult [Quantum Reports 2, 49].") - print( - "prefix_abort.txt: The error message if the algorithm was extremally slow (for some highly entangled states)." - ) - - -# Display the Logo -def DisplayLogo(): - print(" ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ ") - print("██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗") - print("██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝") - print("██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗") - print("╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║") - print(" ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝") - - -def main(args): - # argnum=len(sys.argv) - # args=argstring - argnum = len(args) - verboseflag = True - # args=sys.argv - argflag = False - symflag = False - if (argnum == 7 or argnum == 8) and (int(args[1]) in range(1, 5)): - argflag = True - if argflag == False: - DisplayHelp() - else: - report = int(args[2]) - if report == 0: - verboseflag = False - if verboseflag == True: - DisplayLogo() - correctdimflag = True - mode = int(args[1]) - prefix = args[3] - vis = float(args[4]) - rho = Initrho0(prefix) - totdim = len(rho) - if argnum == 7: - [d1, d2] = DetectDim0(mode, totdim, verboseflag) - elif argnum == 8: - d1 = int(args[7]) - d2 = DetectDim1(mode, totdim, d1, verboseflag) - if d2 == 0: - correctdimflag == False - wrongdim(prefix, mode) - else: - rho = vis * rho + (1 - vis) * MtxFn.ident_mtx(totdim) / totdim - rho1 = np.zeros((totdim, totdim)) - steps = int(args[5]) - if steps == 0: - steps = -30000000 - corrs = int(args[6]) - if corrs == 0: - if exists( - "".join( - [ - prefix, - "_list_", - str(mode), - "_", - str(d1), - "_", - str(vis), - ".mtx", - ] - ) - ) and exists( - "".join( - [ - prefix, - "_out_", - str(mode), - "_", - str(d1), - "_", - str(vis), - ".mtx", - ] - ) - ): - corrs = -500 - else: - coors = 2500 - if correctdimflag == True: - ll1 = Gilbert(mode, prefix, vis, rho, steps, corrs, d1, d2, verboseflag) - if len(ll1) < 10: - if verboseflag == True: - print( - "The report can be generated only if more than 500 corrections were performed." - ) - else: - makeshortreport(prefix, ll1, mode, d1, vis) - if mode == 3: - swaps = [swap123(d1)] - elif mode == 4: - swaps = [swap124(d1), swap134(d1), swap234(d1), swap344(d1)] - else: - swaps = [] - makeshortreport(prefix, ll1, mode, d1, vis) - # makelongreport(prefix, mode, vis, swaps, d1, d2, ll1,verboseflag) - else: - print("Input state dimensionality incompatiblie with declared mode.") - DisplayHelp() - - -if __name__ == "__main__": - main(sys.argv) diff --git a/cssfinder/algorithm/__init__.py b/cssfinder/algorithm/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py new file mode 100644 index 0000000..f25ba89 --- /dev/null +++ b/cssfinder/algorithm/backend/base.py @@ -0,0 +1,72 @@ +"""This module contains base class for creating Gilbert algorithm backends (concrete +implementations) and exceptions which are expected to be raised from backends.""" + + +from __future__ import annotations + +from typing import Callable, Type, TypeVar + +import numpy as np +import numpy.typing as npt + +from cssfinder.io.v1_0_0.asset_loader import State +from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision + +BackendT = TypeVar("BackendT", bound="BackendBase") + + +class BackendBase: + """Gilbert algorithm backend (implementation).""" + + backend_index: dict[tuple[Backend, Precision], Type[BackendBase]] + + def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: + self.initial = initial + self.visibility = visibility + self.mode = mode + + @property + def state(self) -> npt.NDArray[np.complex128]: + """Return current system state with all optimizations applied.""" + raise NotImplementedError() + + @property + def corrections(self) -> list[tuple[int, int, float]]: + """Return list of all corrections found during optimization.""" + raise NotImplementedError() + + @property + def corrections_count(self) -> int: + """Return number of all corrections found during optimization.""" + raise NotImplementedError() + + def run_epoch(self, iterations: int) -> None: + """Run sequence of iterations without stopping to check any stop conditions.""" + raise NotImplementedError() + + @classmethod + def select(cls, backend: Backend, precision: Precision) -> Type[BackendBase]: + """Select one of the backends with fixed precision.""" + try: + return cls.backend_index[(backend, precision)] + except KeyError as exc: + raise UnsupportedBackendError( + f"Backend {backend.name!r} not supported." + ) from exc + + @classmethod + def register( + cls, backend: Backend, precision: Precision + ) -> Callable[[Type[BackendT]], Type[BackendT]]: + """Register backend class as backend implementation.""" + + def _register(backend_cls: Type[BackendT]) -> Type[BackendT]: + cls.backend_index[(backend, precision)] = backend_cls + + return backend_cls + + return _register + + +class UnsupportedBackendError(Exception): + """Raised for unsupported backend type.""" diff --git a/cssfinder/algorithm/backend/numpy/__init__.py b/cssfinder/algorithm/backend/numpy/__init__.py new file mode 100644 index 0000000..cc20f28 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/__init__.py @@ -0,0 +1,31 @@ +"""This module contains.""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt + +from cssfinder.algorithm.backend.base import BackendBase + + +class NumPy(BackendBase): + """Implementation of Gilbert algorithm using python numpy library.""" + + @property + def state(self) -> npt.NDArray[np.complex128]: + """Return current system state with all optimizations applied.""" + raise NotImplementedError() + + @property + def corrections(self) -> list[tuple[int, int, float]]: + """Return list of all corrections found during optimization.""" + raise NotImplementedError() + + @property + def corrections_count(self) -> int: + """Return number of all corrections found during optimization.""" + raise NotImplementedError() + + def run_epoch(self, iterations: int) -> None: + """Run sequence of iterations without stopping to check any stop conditions.""" + raise NotImplementedError() diff --git a/cssfinder/algorithm/backend/numpy/c128.py b/cssfinder/algorithm/backend/numpy/c128.py new file mode 100644 index 0000000..e5bad1d --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/c128.py @@ -0,0 +1,34 @@ +"""This module contains implementation of Gilbert algorithm using numpy and complex128 +precision.""" +from __future__ import annotations + +import numpy as np +import numpy.typing as npt + +from cssfinder.algorithm.backend.base import BackendBase +from cssfinder.algorithm.backend.numpy import NumPy +from cssfinder.project.v1_0_0.cssfproject import Backend, Precision + + +@BackendBase.register(Backend.NumPy, Precision.Complex128) +class NumPyC128(NumPy): + """Implementation of Gilbert algorithm using numpy and complex128 precision.""" + + @property + def state(self) -> npt.NDArray[np.complex128]: + """Return current system state with all optimizations applied.""" + raise NotImplementedError() + + @property + def corrections(self) -> list[tuple[int, int, float]]: + """Return list of all corrections found during optimization.""" + raise NotImplementedError() + + @property + def corrections_count(self) -> int: + """Return number of all corrections found during optimization.""" + raise NotImplementedError() + + def run_epoch(self, iterations: int) -> None: + """Run sequence of iterations without stopping to check any stop conditions.""" + raise NotImplementedError() diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py new file mode 100644 index 0000000..4bd1d06 --- /dev/null +++ b/cssfinder/algorithm/gilbert.py @@ -0,0 +1,55 @@ +"""This module contains public interface of Gilbert algorithm.""" + +from __future__ import annotations + +from cssfinder.algorithm.backend.base import BackendBase +from cssfinder.io.v1_0_0.asset_loader import State +from cssfinder.log import get_logger +from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision + + +class Gilbert: + """Class interface of gilbert algorithm.""" + + def __init__( + self, + initial: State, + mode: AlgoMode, + backend: Backend, + precision: Precision, + visibility: float, + ) -> None: + self.logger = get_logger() + self.initial = initial + self.mode = mode + self.precision = precision + self.visibility = visibility + backend_type = BackendBase.select(backend, self.precision) + self.backend = backend_type(self.initial, self.mode, self.visibility) + + def run(self, epochs: int, iterations: int, max_corrections: int) -> None: + """Run epochs of iterations each, or up to max_corrections found.""" + total_iterations = epochs * iterations + + for epoch_index in range(epochs): + self.logger.info( + "Executing epoch {0} / {1} ({2:.2%})", + epoch_index + 1, + epochs, + (epoch_index + 1) / epochs, + ) + # Run N iterations of algorithm without checking stop conditions. + self.backend.run_epoch(iterations) + + iterations_executed = (epoch_index + 1) * iterations + self.logger.debug( + "Executed {0} iterations, total {1} / {2} ({3:.2%})", + iterations, + iterations_executed, + total_iterations, + iterations_executed / total_iterations, + ) + # Check if we already reached expected number of corrections + if self.backend.corrections_count >= max_corrections: + self.logger.info("") + break diff --git a/cssfinder/api.py b/cssfinder/api.py index a52ee78..84c296d 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -1,13 +1,14 @@ +"""EOL module.""" + from __future__ import annotations import numpy as np -from numpy.typing import NDArray -from cssfinder.gilbert import Gilbert -from cssfinder.io import MatrixIO +from cssfinder._gilbert import Gilbert +from cssfinder.io.matrix import MatrixIO from cssfinder.log import get_logger from cssfinder.task import Task -from cssfinder.types import MtxT +from cssfinder.types import MatrixT def run(task: Task) -> None: @@ -35,7 +36,7 @@ def run(task: Task) -> None: algorithm.run(task.visibility, task.steps, task.correlations) -def load_matrix(task: Task) -> MtxT: +def load_matrix(task: Task) -> MatrixT: """Load matrix from task. Parameters @@ -54,7 +55,7 @@ def load_matrix(task: Task) -> MtxT: return mtx -def is_real_only(mtx: MtxT) -> bool: +def is_real_only(mtx: MatrixT) -> bool: """Check if matrix contains only real values. (Imaginary parts are all 0.) Parameters diff --git a/cssfinder/cli.py b/cssfinder/cli.py index ba527ab..5fa89b5 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,14 +1,16 @@ +"""This module contains implementation of CSSFinder command line interface.""" + from __future__ import annotations -import logging from pathlib import Path from typing import Optional import click import pendulum +import cssfinder from cssfinder.api import run -from cssfinder.io import show_logo +from cssfinder.io.v1_0_0.asset_loader import AssetLoader from cssfinder.log import enable_logging, get_logger from cssfinder.project import ( InvalidCSSFProjectContent, @@ -24,7 +26,7 @@ from cssfinder.task import Task -@click.group(invoke_without_command=True) +@click.group(invoke_without_command=True, no_args_is_help=True) @click.option( "-v", "--verbose", @@ -33,6 +35,7 @@ help="Control verbosity of logging, by default critical only, use " "-v, -vv, -vvv to gradually increase it.", ) +@click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") def main(verbose: int) -> None: """CSSFinder is a script for finding closest separable states.""" enable_logging(verbose) @@ -40,12 +43,22 @@ def main(verbose: int) -> None: logger.info("CSSFinder started at {}", pendulum.now()) if verbose >= 2: - show_logo() + print( + """ + ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ + ██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗ + ██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝ + ██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗ + ╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║ + ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝ +""" + ) @main.command("project") @click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) -def _project(path: str) -> None: +@click.option("--force-squash", is_flag=True, default=False) +def _project(path: str, force_squash: bool) -> None: """Use project file to determine runtime configuration.""" logger = get_logger() @@ -99,6 +112,10 @@ def _project(path: str) -> None: project.info_display() + asset_loader = AssetLoader(project) + state = asset_loader.load_initial_state(force_squash) + print(state) + raise SystemExit(0) @@ -217,7 +234,6 @@ def file( # pylint: disable=too-many-arguments # String formatting reference: https://peps.python.org/pep-3101/ logger.debug("INPUT PARAMETERS") logger.debug("================") - logger.debug(" verbose = {0!r}", verbose) logger.debug(" vis = {0!r}", vis) logger.debug(" steps = {0!r}", steps) logger.debug(" cors = {0!r}", cors) diff --git a/cssfinder/constants.py b/cssfinder/constants.py new file mode 100644 index 0000000..253f395 --- /dev/null +++ b/cssfinder/constants.py @@ -0,0 +1,41 @@ +"""This module contains generic global constants.""" + +from __future__ import annotations + +import numpy as np + +# fmt: off +# pylint: disable=line-too-long +PRIMES = np.array([ + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, + 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, + 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, + 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, + 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, + 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, + 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, + 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, + 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, + 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, + 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, + 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, + 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, + 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, + 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, + 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, + 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, + 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, + 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, + 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, + 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, + 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, + 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, + 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, + 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, + 1973, 1979, 1987, 1993, 1997, 1999, +], dtype=np.int64) +# pylint: enable=line-too-long +# fmt: on +"""All prime numbers from 2 to 1999, used by algorithms in this package.""" diff --git a/cssfinder/gilbert.py b/cssfinder/gilbert.py deleted file mode 100644 index adc4c24..0000000 --- a/cssfinder/gilbert.py +++ /dev/null @@ -1,229 +0,0 @@ -from __future__ import annotations - -import logging -# from concurrent.futures import ThreadPoolExecutor -from dataclasses import dataclass -from time import perf_counter -from typing import Any, Optional - -import numpy as np - -from cssfinder import ops -from cssfinder.log import get_logger -from cssfinder.modes import Mode, ModeABC -from cssfinder.types import MtxC128T, MtxT - - -class Gilbert: - """Gilbert algorithm implementation.""" - - def __init__( - self, - mode: Mode, - initial_state: MtxT, - size: Optional[int], - sub_sys_size: Optional[int], - ) -> None: - self.mode = ModeABC.use(mode)() - self.initial_state = initial_state - self.logger = get_logger() - - self.logger.debug("Created Gilbert algorithm using mode: {!r}", self.mode) - self.logger.debug( - "Using initial matrix: shape {!r} dtype {}", - self.initial_state.shape, - self.initial_state.dtype, - ) - - if sub_sys_size is None: - if size is None: - ( - self.size, - self.sub_sys_size, - ) = self.mode.detect_dims_none_given(self.total_system_size) - else: - ( - self.size, - self.sub_sys_size, - ) = self.mode.detect_dims_size_given(size, self.total_system_size) - - @property - def total_system_size(self) -> int: - """Total size of system determined from initial state first axis size.""" - return len(self.initial_state) - - def run(self, visibility: float, steps: int, correlations: int) -> None: - - total_sys_size = self.total_system_size - identity_mtx = np.identity(total_sys_size) - state = self.initial_state - inverse_visibility = np.subtract(1, visibility) - - rho = np.add( - np.multiply(visibility, state), - np.divide( - np.multiply(inverse_visibility, identity_mtx), - total_sys_size, - ), - ) - - start_time = perf_counter() - _gilbert( - rho.astype(np.complex128), - self.mode, - steps, - correlations, - self.size, - self.sub_sys_size, - 0.0000001, - ) - end_time = perf_counter() - logging.critical(f"Optimization took {end_time - start_time:.0f}s") - - -@dataclass -class Correlation: - - iter_left: int - found_at_iter: int - value: np.float64 - - -def _gilbert( - rho: MtxC128T, - mode: ModeABC, - steps: int, - correlations: int, - size: int, - sub_sys_size: int, - precision: float, - log_every_epochs: int = 5000, -) -> None: - - # executor = ThreadPoolExecutor(max_workers=4) - - logger = get_logger() - logger.debug("==================") - logger.debug(" _gilbert params:") - logger.debug("==================") - logger.debug(" mode = {}", mode) - logger.debug(" steps = {}", steps) - logger.debug(" correlations = {}", correlations) - logger.debug(" size = {}", size) - logger.debug(" sub_sys_size = {}", sub_sys_size) - logger.debug(" precision = {}", precision) - logger.debug("==================") - - _debug_msg_short_rho(True, 0, rho) - - rho1 = np.zeros_like(rho, dtype=np.complex128) - np.fill_diagonal(rho1, rho.diagonal()) - - _debug_msg_short_rho(True, 1, rho1) - - rho3 = rho - rho1 - _debug_msg_short_rho(True, 3, rho3) - - # product_0_1, product_1_1, product_1_3 = executor.map( - # ops.product, [rho, rho1, rho1], [rho1, rho1, rho3] - # ) - - product_0_1 = ops.product(rho, rho1) - logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_0_1), product_0_1) - - product_1_1 = ops.product(rho1, rho1) - logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_1_1), product_1_1) - - product_1_3 = ops.product(rho1, rho3) - logger.debug("Product RHO1 RHO3 type: {} value: {}", type(product_1_3), product_1_3) - - optimization_epochs = 20 * size * size * sub_sys_size - - correlations_list: list[Correlation] = [] - idx = 0 - - limiter_product_1_3 = product_1_3 - logger.info("Starting optimization...") - - for idx in range(steps): - is_log_iter = bool(idx % log_every_epochs == 0) - - if is_log_iter: - logger.debug("Optimization epoch: {}, product_1_3: {}", idx, product_1_3) - - if len(correlations_list) >= correlations: - return - - if correlations_list and correlations_list[-1].value <= precision: - return - - rho2 = mode.random(size, sub_sys_size) - _debug_msg_short_rho(is_log_iter, 2, rho2) - - product_2_3 = ops.product(rho2, rho3) - _debug_msg_product(is_log_iter, 2, 3, product_2_3) - _debug_msg_product(is_log_iter, 1, 3, limiter_product_1_3) - - if product_2_3 > limiter_product_1_3: - if is_log_iter: - logger.debug("Optimization epoch {}", product_2_3) - - rho2 = mode.optimize(rho2, rho3, size, sub_sys_size, optimization_epochs) - - # product_0_2, product_1_2, product_2_2 = executor.map( - # ops.product, [rho, rho1, rho2], [rho2, rho2, rho2] - # ) - - product_0_2 = ops.product(rho, rho2) - _debug_msg_product(is_log_iter, 0, 2, product_0_2) - double_product_0_2 = 2 * product_0_2 - - product_1_2 = ops.product(rho1, rho2) - _debug_msg_product(is_log_iter, 1, 2, product_1_2) - double_product_1_2 = 2 * product_1_2 - - product_2_2 = ops.product(rho2, rho2) - _debug_msg_product(is_log_iter, 2, 2, product_2_2) - double_product_2_2 = 2 * product_2_2 - - bb2 = ( - -product_0_1 - + double_product_0_2 - + double_product_1_2 - - double_product_2_2 - ) - bb3 = product_1_1 - double_product_1_2 + product_2_2 - cc1 = -bb2 / (2 * bb3) - - if 0 < cc1 <= 1: - logger.debug(f"Altered statue with cc1 {cc1}") - rho1 = cc1 * rho1 + (1 - cc1) * rho2 - - rho3 = rho - rho1 - - product_1_1 = ops.product(rho1, rho1) - - product_1_3 = product_0_1 - product_1_1 - limiter_product_1_3 = product_1_3 - - double_product_0_1 = 2 * product_0_1 - product_0_1 = double_product_0_1 - - logger.info("Finished optimization...") - # executor.__exit__(None, None, None) - - -def _debug_msg_product(is_log_iter: bool, x: int, y: int, prod: float) -> None: - if is_log_iter: - get_logger().debug("Product RHO{} RHO{}: {}, type: {}", x, y, prod, type(prod)) - - -def _debug_msg_short_rho(is_log_iter: bool, x: int, rho: Any) -> None: - if is_log_iter: - get_logger().debug( - "\n RHO{} type: {} shape: {} dtype: {}", - x, - type(rho), - rho.shape, - rho.dtype, - ) diff --git a/cssfinder/io.py b/cssfinder/io.py deleted file mode 100644 index 09e05a0..0000000 --- a/cssfinder/io.py +++ /dev/null @@ -1,80 +0,0 @@ -"""Program input/output utilities. -""" - -from __future__ import annotations - -from abc import ABC, abstractmethod -from pathlib import Path -from typing import Optional, Type - -import numpy as np -import scipy.io - -from cssfinder.log import get_logger -from cssfinder.types import MtxT - - -def show_logo() -> None: - """Print CSSFinder logo ASCII art.""" - print( - """ - ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ - ██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗ - ██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝ - ██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗ - ╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║ - ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝ -""" - ) - - -class MatrixIO(ABC): - """Abstract base class declaring interface of matrix input-output manager.""" - - def __init__(self, file_path: Path) -> None: - self.file_path = file_path - - @classmethod - def new(cls, file_path: Path, file_format: Optional[str] = None) -> MatrixIO: - """Create new instance of matrix loader for file format. When format is - None, file format is deduced from file extension. - - Parameters - ---------- - file_path : Path - Path to file containing matrix data. - format : Optional[str], optional - File format specifier in form of extension, eg. ".mtx", by default None - - Returns - ------- - MatrixIO - Matrix loader. - """ - if file_format is None: - file_format = file_path.suffix - - logger = get_logger() - logger.debug( - "Using file format {!r} for file {}", file_format, file_path.as_posix() - ) - - return FORMAT_TO_LOADER[file_format](file_path) - - @abstractmethod - def load(self) -> MtxT: - """Load matrix from file as numpy array.""" - - -class MatrixMarketIO(MatrixIO): - """MatrixIO implementation for loading MatrixMarket exchange format files.""" - - def load(self) -> MtxT: - mtx = scipy.io.mmread(self.file_path.as_posix()) - assert mtx is not None - return np.array(mtx) - - -FORMAT_TO_LOADER: dict[str, Type[MatrixIO]] = { - ".mtx": MatrixMarketIO, -} diff --git a/cssfinder/io/__init__.py b/cssfinder/io/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py new file mode 100644 index 0000000..eb67d00 --- /dev/null +++ b/cssfinder/io/matrix.py @@ -0,0 +1,68 @@ +"""Program input/output utilities.""" + +from __future__ import annotations + +from abc import ABC, abstractmethod +from pathlib import Path +from typing import Optional, Type + +import numpy as np +import scipy.io + +from cssfinder.log import get_logger +from cssfinder.types import MatrixT + + +class MatrixIO(ABC): + """Abstract base class declaring interface of matrix input-output manager.""" + + def __init__(self, file_path: Path) -> None: + self.file_path = file_path + + @classmethod + def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> MatrixIO: + """Create new instance of matrix loader for file format. When format is None, + file format is deduced from file extension. + + Parameters + ---------- + file_path : Path + Path to file containing matrix data. + format : Optional[str], optional + File format specifier in form of extension, eg. ".mtx", by default None + + Returns + ------- + MatrixIO + Matrix loader. + """ + if isinstance(file_path, str): + file_path = Path(file_path) + + if file_format is None: + file_format = file_path.suffix + + logger = get_logger() + logger.debug( + "Using file format {!r} for file {}", file_format, file_path.as_posix() + ) + + return FORMAT_TO_LOADER[file_format](file_path) + + @abstractmethod + def load(self) -> MatrixT: + """Load matrix from file as numpy array.""" + + +class MatrixMarketIO(MatrixIO): + """MatrixIO implementation for loading MatrixMarket exchange format files.""" + + def load(self) -> MatrixT: + mtx = scipy.io.mmread(self.file_path.as_posix()) + assert mtx is not None + return np.array(mtx) + + +FORMAT_TO_LOADER: dict[str, Type[MatrixIO]] = { + ".mtx": MatrixMarketIO, +} diff --git a/cssfinder/io/v1_0_0/__init__.py b/cssfinder/io/v1_0_0/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/io/v1_0_0/asset_loader.py b/cssfinder/io/v1_0_0/asset_loader.py new file mode 100644 index 0000000..32c55ff --- /dev/null +++ b/cssfinder/io/v1_0_0/asset_loader.py @@ -0,0 +1,224 @@ +"""This module contains implementation of asset loader class in version 1.0.0 which is +compatible with CSSFProject in version 1.0.0.""" + +from __future__ import annotations + +import math +import operator +from functools import reduce +from typing import ClassVar + +import numpy as np +from packaging.version import Version +from pydantic import BaseModel + +from cssfinder.constants import PRIMES +from cssfinder.io.matrix import MatrixIO +from cssfinder.log import get_logger +from cssfinder.project.v1_0_0.cssfproject import CSSFProjectV100 +from cssfinder.types import MatrixC128T + + +class AssetLoader: + """Provides interface for loading project assets from files.""" + + version: ClassVar[Version] = Version("1.0.0") + + def __init__(self, project: CSSFProjectV100) -> None: + self.project = project + + def load_initial_state(self, force_squash: bool = False) -> State: + """Load initial state from file indicated by cssfproject configuration.""" + logger = get_logger() + + state_props = self.project.resources.initial_state + # Replace magic variables with dynamically determined values + state_matrix_file_path = self.project.expand_path(state_props.file) + + loader = MatrixIO.new(state_matrix_file_path) + mtx = loader.load().astype(np.complex128) + logger.info( + "Loaded matrix from {0!r} of shape {1}", state_matrix_file_path, mtx.shape + ) + + # Forcefully reshape array to match shape criterion + if force_squash: + total_size = reduce(operator.mul, mtx.shape) + one_axis_size = np.sqrt(total_size) + mtx = mtx.reshape((one_axis_size, one_axis_size)) + + # We are expecting loaded ndarray to be a square matrix, all other numbers of + # dimensions cause crash. + self._check_matrix_shape(mtx) + + total_size = len(mtx) + + depth, quantity = state_props.depth, state_props.quantity + + # Depth and quantity are optional and we can determine first matching pair + # of those values based on number of rows in matrix + if depth is None: + old_quantity = quantity + depth, quantity = self.detect_depth_and_quantity(total_size) + + if old_quantity is not None: + logger.warning( + ( + "State quantity ({0}) was ignored, as depth is None, " + + "quantity of {1} was deduced." + ), + old_quantity, + quantity, + ) + + elif quantity is None: + quantity = self.detect_system_quantity(depth, total_size) + + logger.info( + "Matrix represents system with depth = {0}, quantity = {1}", depth, quantity + ) + return State(state=mtx, depth=depth, quantity=quantity) + + def _check_matrix_shape(self, mtx: MatrixC128T) -> None: + """Check if ndarray conforms shape rules.""" + logger = get_logger() + + if len(mtx.shape) == 2: + pass + + elif len(mtx.shape) > 2: + logger.critical( + "Expected square matrix but got tensor with shape {0}", mtx.shape + ) + raise NotExpectedTensor(mtx) + + elif len(mtx.shape) == 1: + logger.critical( + "Expected square matrix but got vector with shape {0}", mtx.shape + ) + raise NotExpectedVector(mtx) + + elif len(mtx.shape) == 0: + logger.critical("Expected square matrix but got scalar ({0})", mtx) + raise NotExpectedScalar(mtx) + + else: + raise AssertionError(mtx.shape) + + # Only square matrices are accepted. + x_size, y_size = mtx.shape + if x_size != y_size: + logger.critical("Expected square matrix, but received shape {0}", mtx.shape) + raise IncorrectMatrixShape(mtx) + + def detect_depth_and_quantity(self, total: int) -> tuple[int, int]: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Total size of matrix. + + Returns + ------- + tuple[int, int] + Depth, quantity tuple. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + """ + for depth in PRIMES: + quantity = int(math.log(total, depth)) + + if quantity == int(quantity): + get_logger().debug( + "Deduced quantity {0} and depth {1} when given total size {2}", + depth, + quantity, + total, + ) + return depth, quantity + + raise ValueError( + "Couldn't determine size of system, prime number range exceeded." + ) + + def detect_system_quantity(self, depth: int, total: int) -> int: + """Detect system quantity (number of subsystems). + + Parameters + ---------- + depth : int + Depth of each subsystem (d) + total : int + Total size of matrix. + + Returns + ------- + int + Quantity. + + Raises + ------ + ValueError + When quantity can't be determined. + """ + quantity = int(math.log(total, depth)) + + if quantity == int(quantity): + get_logger().debug( + "Deduced quantity {0} when given depth of {1}", depth, quantity + ) + return quantity + + raise ValueError( + f"Couldn't determine size of system: {quantity} == {int(quantity)} is " + "False.", + ) + + def load_symmetries(self) -> None: + """Load matrices describing symmetries of system state.""" + + def load_projection(self) -> None: + """Load matrix describing projection of system state.""" + + +class State(BaseModel): + """State matrix and system dimensions.""" + + state: MatrixC128T + """Path to file containing state matrix.""" + + depth: int + """Depth of system, ie. + + (D)imensions in qu(D)it. (d) + """ + + quantity: int + """Quantity of systems. + + ie. number of qu(D)its in state. (n) + """ + + +class IncorrectMatrixShape(ValueError): + """Raised when matrix has incorrect shape.""" + + def __init__(self, mtx: MatrixC128T) -> None: + super().__init__() + self.mtx = mtx + + +class NotExpectedTensor(IncorrectMatrixShape): + """Raised when got 3+ dimensional tensor instead of matrix.""" + + +class NotExpectedVector(IncorrectMatrixShape): + """Raised when got vector instead of matrix.""" + + +class NotExpectedScalar(IncorrectMatrixShape): + """Raised when got scalar instead of matrix.""" diff --git a/cssfinder/log.py b/cssfinder/log.py index a247c74..8cfcb10 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -1,8 +1,9 @@ +"""This module contains logging utilities used by CSSFinder package.""" from __future__ import annotations import logging -import logging.handlers as handlers import sys +from logging import handlers from pathlib import Path from typing import Any, MutableMapping @@ -31,7 +32,10 @@ def __str__(self) -> str: disable_format = self.kwargs.get("extra", {}).get("disable_format", False) if disable_format: return self.fmt - return str(self.fmt).format(*self.args, **self.kwargs) + try: + return str(self.fmt).format(*self.args, **self.kwargs) + except (IndexError, KeyError): + return str(self.fmt) class FormatStringAdapter(logging.LoggerAdapter): diff --git a/cssfinder/modes.py b/cssfinder/modes.py index 21976c0..9ea92d8 100644 --- a/cssfinder/modes.py +++ b/cssfinder/modes.py @@ -1,3 +1,5 @@ +"""EOL module.""" + from __future__ import annotations import math @@ -9,7 +11,7 @@ from cssfinder import ops from cssfinder.log import get_logger -from cssfinder.types import MtxC128T, MtxT +from cssfinder.types import MatrixC128T # fmt: off # pylint: disable=line-too-long @@ -73,10 +75,10 @@ class Mode(Enum): """Separability of a bipartite state.""" G3PE3Q = "G3PE3Q" - """Genuine 3-partite entanglement of a 3-quDit state""" + """Genuine 3-partite entanglement of a 3-quDit state.""" G4PE3Q = "G4PE3Q" - """Genuine 4-partite entanglement of a 3-quDit state""" + """Genuine 4-partite entanglement of a 3-quDit state.""" class ModeABC(ABC): @@ -132,12 +134,12 @@ def use(cls, mode: Mode) -> Type[ModeABC]: @staticmethod @abstractmethod - def optimize(*args: Any) -> MtxC128T: + def optimize(*args: Any) -> MatrixC128T: """Implementation of optimization for specified mode.""" @staticmethod @abstractmethod - def random(*args: Any) -> MtxC128T: + def random(*args: Any) -> MatrixC128T: """Radom state for optimization.""" @@ -177,12 +179,12 @@ def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: ) @staticmethod - def optimize(*args: Any) -> MtxC128T: + def optimize(*args: Any) -> MatrixC128T: rho2, rho3, size, sub_sys_size, epochs = args return ops.optimize_d_fs(rho2, rho3, size, sub_sys_size, epochs) @staticmethod - def random(*args: Any) -> MtxC128T: + def random(*args: Any) -> MatrixC128T: size, sub_sys_size = args return ops.random_d_fs(size, sub_sys_size) diff --git a/cssfinder/ops.py b/cssfinder/ops.py index 8e88ffc..768e617 100644 --- a/cssfinder/ops.py +++ b/cssfinder/ops.py @@ -1,43 +1,44 @@ +"""EOL module.""" from __future__ import annotations + from typing import cast import numpy as np -from numba import jit -from cssfinder.types import MtxC128T +from cssfinder.types import MatrixC128T -@jit(nopython=True, nogil=True, cache=True) -def product(mtx1: MtxC128T, mtx2: MtxC128T) -> float: +# @jit(nopython=True, nogil=True, cache=True) +def product(mtx1: MatrixC128T, mtx2: MatrixC128T) -> float: """Scalar product of two matrices.""" k = np.trace(np.dot(mtx1, mtx2)) # matmul replaced with dot return float(np.real(k)) -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: MtxC128T) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: MatrixC128T) -> MatrixC128T: """Normalization of a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) val = np.sqrt(np.real(mtx2)) return mtx / val # type: ignore -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(size: int) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def get_random_haar(size: int) -> MatrixC128T: """Generate a random vector with Haar measure.""" real = np.random.normal(0, 1, size) imaginary = np.random.normal(0, 1, size) return real + 1j * imaginary -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: MtxC128T) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def project(mtx1: MatrixC128T) -> MatrixC128T: """Build a projection from a vector.""" return np.outer(mtx1, np.conj(mtx1)) -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(size: int, sub_sys_size: int) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def random_d_fs(size: int, sub_sys_size: int) -> MatrixC128T: """Random n quDit state.""" vector = normalize(get_random_haar(size)) @@ -52,8 +53,8 @@ def random_d_fs(size: int, sub_sys_size: int) -> MtxC128T: # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) def optimize_d_fs( - rho2: MtxC128T, rho3: MtxC128T, size: int, sub_sys_size: int, epochs: int -) -> MtxC128T: + rho2: MatrixC128T, rho3: MatrixC128T, size: int, sub_sys_size: int, epochs: int +) -> MatrixC128T: """Optimize implementation for FSQN mode.""" product_2_3 = product(rho2, rho3) @@ -85,15 +86,15 @@ def optimize_d_fs( # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) -def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MtxC128T: - """n quDits""" +def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MatrixC128T: + """N quDits.""" value = _random_unitary_d_fs_val(size) mtx = expand_d_fs(value, size, sub_sys_size, idx) return mtx -@jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(size: int) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(size: int) -> MatrixC128T: real = np.cos(0.01 * np.pi) imag = 1j * np.sin(0.01 * np.pi) value = real + imag - 1 @@ -107,11 +108,11 @@ def _random_unitary_d_fs_val(size: int) -> MtxC128T: # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) def expand_d_fs( # pylint: disable=invalid-name - value: MtxC128T, + value: MatrixC128T, size: int, sub_sys_size: int, idx: int, -) -> MtxC128T: +) -> MatrixC128T: """Expand an operator to n quDits.""" size_1 = int(size**idx) identity_1 = np.identity(size_1).astype(np.complex128) @@ -122,12 +123,12 @@ def expand_d_fs( # pylint: disable=invalid-name kronecker_1 = kronecker(identity_1, value) kronecker_2 = kronecker(kronecker_1, identity_2) - return cast(MtxC128T, kronecker_2) + return cast(MatrixC128T, kronecker_2) # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) -def kronecker(mtx: MtxC128T, mtx1: MtxC128T) -> MtxC128T: +def kronecker(mtx: MatrixC128T, mtx1: MatrixC128T) -> MatrixC128T: """Kronecker Product.""" ddd1 = len(mtx) ddd2 = len(mtx1) @@ -139,8 +140,8 @@ def kronecker(mtx: MtxC128T, mtx1: MtxC128T) -> MtxC128T: return out_mtx.reshape(output_shape) -@jit(nopython=True, nogil=True, cache=True) -def rotate(rho2: MtxC128T, unitary: MtxC128T) -> MtxC128T: +# @jit(nopython=True, nogil=True, cache=True) +def rotate(rho2: MatrixC128T, unitary: MatrixC128T) -> MatrixC128T: """Sandwich an operator with a unitary.""" rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot rho2a = np.dot(unitary, rho2a) # matmul replaced with dot diff --git a/cssfinder/project/base.py b/cssfinder/project/base.py index f6c3671..d60b502 100644 --- a/cssfinder/project/base.py +++ b/cssfinder/project/base.py @@ -1,5 +1,7 @@ +"""This file contains metaclass and base class used to create concrete implementations +of cssfproject.json file format containers.""" + from __future__ import annotations -import logging from pathlib import Path from typing import Any, ClassVar, Optional, Type, TypeVar, cast @@ -41,14 +43,21 @@ class CSSFProjectBase(BaseModel, metaclass=CSSFProjectMeta): version: ClassVar[Version] = Version("0.0.0") """Project file format version.""" - project_path: Optional[Path] + file: Optional[Path] """Path to loaded project file.""" + @property + def directory(self) -> Optional[Path]: + """Path to directory containing cssfproject.json file.""" + if self.file is None: + return None + return self.file + class Config: validate_assignment = True extra = Extra.ignore - @validator("project_path") + @validator("file") @classmethod def _path_resolve(cls, value: Path) -> Path: if isinstance(value, Path): @@ -112,6 +121,24 @@ def new( return cast(CSSFProjectBaseT, project) + def expand_path(self, path: str) -> str: + """Expand all special variables in path string. + + Parameters + ---------- + path : str + Path string to expand. + project : CSSFProjectBase + Project to expand path for, it will be used as source of some special + variables. + + Returns + ------- + str + Expanded path. + """ + return path.format(project=self) + class CSSFProjectFileMissingVersion(ValueError): """Raised when "version" field is missing in cssfproject.json file.""" diff --git a/cssfinder/project/v1_0_0/cssfproject.py b/cssfinder/project/v1_0_0/cssfproject.py index 572349f..18102ca 100644 --- a/cssfinder/project/v1_0_0/cssfproject.py +++ b/cssfinder/project/v1_0_0/cssfproject.py @@ -1,22 +1,24 @@ """CSSFinder uses its own project format allowing for file based customization of -parameters used by gilbert algorithm. This file contains implementation of project -configuration in 1.0.0 version. +parameters used by gilbert algorithm. + +This file contains implementation of project configuration in 1.0.0 version. """ from __future__ import annotations -from typing import ClassVar, Optional +from enum import Enum +from typing import ClassVar, Optional, Type, TypeVar from packaging.version import Version -from pydantic import BaseModel, ConstrainedStr, EmailStr -from cssfinder.log import get_logger +from pydantic import BaseModel, ConstrainedStr, EmailStr, Field +from cssfinder.log import get_logger from cssfinder.project.base import CSSFProjectBase class CSSFProjectV100(CSSFProjectBase): - """CSSFProject file specification version 1.0.0""" + """CSSFProject file specification version 1.0.0.""" version: ClassVar[Version] = Version("1.0.0") """Project file format version.""" @@ -27,11 +29,14 @@ class CSSFProjectV100(CSSFProjectBase): resources: Resources """Resources used by project, including state matrices and other files.""" + algorithm: Algorithm + def info_display(self) -> None: """Display configuration content.""" logger = get_logger() logger.info("\n" + self.json(indent=2), extra=dict(disable_format=True)) + class Meta(BaseModel): """Project meta information.""" @@ -81,11 +86,132 @@ class State(BaseModel): """Path to file containing state matrix.""" depth: Optional[int] - """Depth of system, ie. (D)imensions in qu(D)it. (d)""" + """Depth of system, ie. + + (D)imensions in qu(D)it. (d) + """ quantity: Optional[int] - """Quantity of systems. ie. number of qu(D)its in state. (n)""" + """Quantity of systems. + + ie. number of qu(D)its in state. (n) + """ + + +class Algorithm(BaseModel): + """Algorithm configuration.""" + + type: AlgoType + """Type of algorithm to execute.""" + + mode: AlgoMode + """Algorithm mode to use.""" + + backend: Backend + """Backend to use for calculations.""" + + precision: Precision + """Precision of calculations.""" + + visibility: float = Field(ge=0.0, le=1.0) + """Visibility against white noise. + + Between 0 and 1. + """ + + max_epochs: int = Field(ge=1, le=1_000_000_000) + """Maximal number of algorithm epochs to perform. + + If other interruption condition is met before the number of epochs, algorithm wont + execute the rest of epochs. + """ + + iters_per_epoch: int = Field(ge=1, le=1_000_000) + """Number of iterations per epochs. + + Between iterations no checks are performed, which may speed up calculations. However + intermediate state of systems are not saved anywhere. + """ + + max_corrections: int + """Maximal number of corrections to collect. + + Use -1 to disable this limit. + """ + + +_CIEnumT = TypeVar("_CIEnumT", bound="_CIEnum") + + +class _CIEnum(Enum): + """Case insensitive enum base class.""" + + @classmethod + def _missing_(cls: Type[_CIEnumT], value: object) -> _CIEnumT: + name = str(value) + for member in cls: + if member.name.casefold() == name.casefold(): + return member + + raise AttributeError(f"No enum value matches name {name!r}.") + + +class AlgoType(_CIEnum): + """Type of algorithm.""" + + GILBERT = "GILBERT" + + +class AlgoMode(_CIEnum): + """Mode of algorithm.""" + + # pylint: disable=invalid-name + + FSnQd = "FSnQd" + """Full separability of n-quDit state.""" + + SBiPa = "SBiPi" + """Separability of a bipartite state.""" + + G3PaE3qD = "G3PaE3qD" + """Genuine 3-partite entanglement of a 3-quDit state.""" + + G4PaE3qD = "G4PaE3qD" + """Genuine 4-partite entanglement of a 3-quDit state.""" + + # pylint: enable=invalid-name + + +class Backend(_CIEnum): + """Backend to use for calculations.""" + + # pylint: disable=invalid-name + + NumPy = "NumPy" + + # pylint: enable=invalid-name + + +class Precision(_CIEnum): + """Precision of calculations performed.""" + + # pylint: disable=invalid-name + + Float64 = "Float64" + """64bit floating point without complex values.""" + + Float32 = "Float32" + """32bit floating point without complex values.""" + + Complex128 = "Complex128" + """64 bit floating point real part with 64 bit floating point complex value.""" + + Complex64 = "Complex64" + """32 bit floating point real part with 32 bit floating point complex value.""" + + # pylint: enable=invalid-name + -Resources.update_forward_refs() -Meta.update_forward_refs() -CSSFProjectV100.update_forward_refs() +Resources.update_forward_refs() # type: ignore +Meta.update_forward_refs() # type: ignore +CSSFProjectV100.update_forward_refs() # type: ignore diff --git a/cssfinder/types.py b/cssfinder/types.py index 1005d69..e22a93c 100644 --- a/cssfinder/types.py +++ b/cssfinder/types.py @@ -1,3 +1,4 @@ +"""This module contains helper types for CSSFinder package (EOL module).""" from __future__ import annotations from typing import TYPE_CHECKING @@ -10,6 +11,6 @@ DTypeT: TypeAlias = "np.int64 | np.float64 | np.complex128" -MtxT: TypeAlias = npt.NDArray[DTypeT] +MatrixT: TypeAlias = npt.NDArray[DTypeT] -MtxC128T: TypeAlias = npt.NDArray[np.complex128] +MatrixC128T: TypeAlias = npt.NDArray[np.complex128] diff --git a/poetry.lock b/poetry.lock index 5bcdf99..1b9872e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -14,19 +14,19 @@ files = [ [[package]] name = "astroid" -version = "2.12.13" +version = "2.13.3" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false python-versions = ">=3.7.2" files = [ - {file = "astroid-2.12.13-py3-none-any.whl", hash = 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(>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] @@ -1050,18 +1168,6 @@ files = [ [package.dependencies] tornado = ">=2.0" -[[package]] -name = "toml" -version = "0.10.2" -description = "Python Library for Tom's Obvious, Minimal Language" -category = "dev" -optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -files = [ - {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"}, - {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"}, -] - [[package]] name = "tomli" version = "2.0.1" @@ -1111,7 +1217,7 @@ files = [ name = "typing-extensions" version = "4.4.0" description = "Backported and Experimental Type Hints for Python 3.7+" -category = "dev" +category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1153,14 +1259,14 @@ testing = ["coverage (>=6.2)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7 [[package]] name = "wcwidth" -version = "0.2.5" +version = "0.2.6" description = "Measures the displayed width of unicode strings in a terminal" category = "dev" optional = false python-versions = "*" files = [ - {file = "wcwidth-0.2.5-py2.py3-none-any.whl", hash = "sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784"}, - {file = "wcwidth-0.2.5.tar.gz", hash = "sha256:c4d647b99872929fdb7bdcaa4fbe7f01413ed3d98077df798530e5b04f116c83"}, + {file = "wcwidth-0.2.6-py2.py3-none-any.whl", hash = "sha256:795b138f6875577cd91bba52baf9e445cd5118fd32723b460e30a0af30ea230e"}, + {file = "wcwidth-0.2.6.tar.gz", hash = "sha256:a5220780a404dbe3353789870978e472cfe477761f06ee55077256e509b156d0"}, ] [[package]] @@ -1256,4 +1362,4 @@ testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools" [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "664daa6921b3175d630da1636bef6792402f638097bf9f7a6d03d96ee1661619" +content-hash = "028d8bad667ad3e6ec2ce98fdfd0405fcd29c6752971dfb9c9d3c73bcb952465" diff --git a/poetry.toml b/poetry.toml index efa46ec..ab1033b 100644 --- a/poetry.toml +++ b/poetry.toml @@ -1,2 +1,2 @@ [virtualenvs] -in-project = true \ No newline at end of file +in-project = true diff --git a/profiling/fsqn_64_64.py b/profiling/fsqn_64_64.py index e340ea0..0a4d14c 100644 --- a/profiling/fsqn_64_64.py +++ b/profiling/fsqn_64_64.py @@ -1,6 +1,9 @@ +"""EOL module.""" +from __future__ import annotations + from pathlib import Path -from cssfinder.cli import main +from cssfinder.cli import main FILE = Path(__file__) DIR = FILE.parent diff --git a/pyproject.toml b/pyproject.toml index 03766be..376c8ee 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,12 +12,15 @@ numpy = "^1.23.0" numba = "^0.56.4" pendulum = "^2.1.2" scipy = "^1.9.3" +pydantic = "^1.10.4" +packaging = "^23.0" +email-validator = "^1.3.1" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" pylint = "^2.15.9" isort = "^5.11.4" -docformatter = "^1.5.1" +docformatter = {extras = ["tomli"], version = "^1.5.1"} pytest = "^7.2.0" autoflake = "^2.0.0" pre-commit = "^2.20.0" From bbe7d6e5d27a6fa336b293979775830ae51884d2 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Fri, 10 Feb 2023 22:53:25 +0100 Subject: [PATCH 035/227] WIP --- cssfinder/_gilbert.py | 244 ++++++++++++++++++ cssfinder/algorithm/backend/base.py | 2 +- cssfinder/algorithm/backend/numpy/__init__.py | 2 +- cssfinder/algorithm/backend/numpy/c128.py | 223 +++++++++++++++- cssfinder/algorithm/gilbert.py | 2 +- cssfinder/io/v1_0_0/asset_loader.py | 8 +- cssfinder/ops.py | 15 +- cssfinder/report.py | 86 ++++++ 8 files changed, 563 insertions(+), 19 deletions(-) create mode 100644 cssfinder/_gilbert.py create mode 100644 cssfinder/report.py diff --git a/cssfinder/_gilbert.py b/cssfinder/_gilbert.py new file mode 100644 index 0000000..e2e8c5c --- /dev/null +++ b/cssfinder/_gilbert.py @@ -0,0 +1,244 @@ +from __future__ import annotations + +import logging + +# from concurrent.futures import ThreadPoolExecutor +from dataclasses import dataclass +from time import perf_counter +from typing import Any, Optional + +import numpy as np + +from cssfinder import ops +from cssfinder.log import get_logger +from cssfinder.modes import Mode, ModeABC +from cssfinder.report import makeshortreport +from cssfinder.types import MatrixC128T, MatrixT + +np.random.seed(0) + + +class Gilbert: + """Gilbert algorithm implementation.""" + + def __init__( + self, + mode: Mode, + initial_state: MatrixT, + size: Optional[int], + sub_sys_size: Optional[int], + ) -> None: + self.mode = ModeABC.use(mode)() + self.initial_state = initial_state + self.logger = get_logger() + + self.logger.debug("Created Gilbert algorithm using mode: {!r}", self.mode) + self.logger.debug( + "Using initial matrix: shape {!r} dtype {}", + self.initial_state.shape, + self.initial_state.dtype, + ) + + if sub_sys_size is None: + if size is None: + ( + self.size, + self.sub_sys_size, + ) = self.mode.detect_dims_none_given(self.total_system_size) + else: + ( + self.size, + self.sub_sys_size, + ) = self.mode.detect_dims_size_given(size, self.total_system_size) + + @property + def total_system_size(self) -> int: + """Total size of system determined from initial state first axis size.""" + return len(self.initial_state) + + def run(self, visibility: float, steps: int, corrections: int) -> None: + total_sys_size = self.total_system_size + identity_mtx = np.identity(total_sys_size) + state = self.initial_state + inverse_visibility = np.subtract(1, visibility) + + rho = np.add( + np.multiply(visibility, state), + np.divide( + np.multiply(inverse_visibility, identity_mtx), + total_sys_size, + ), + ) + + start_time = perf_counter() + _gilbert( + rho.astype(np.complex128), + self.mode, + steps, + corrections, + self.size, + self.sub_sys_size, + 0.0000001, + ) + end_time = perf_counter() + logging.critical("Optimization took {:.0f}s", end_time - start_time) + + +@dataclass +class Correction: + + iteration_number: int + correction_number: int + value: float + + +def _gilbert( + input_state: MatrixC128T, + mode: ModeABC, + steps: int, + corrections: int, + size: int, + sub_sys_size: int, + precision: float, + log_every_epochs: int = 5000, +) -> list[Correction]: + + # executor = ThreadPoolExecutor(max_workers=4) + + logger = get_logger() + logger.debug("==================") + logger.debug(" _gilbert params:") + logger.debug("==================") + logger.debug(" mode = {}", mode) + logger.debug(" steps = {}", steps) + logger.debug(" corrections = {}", corrections) + logger.debug(" size = {}", size) + logger.debug(" sub_sys_size = {}", sub_sys_size) + logger.debug(" precision = {}", precision) + logger.debug("==================") + + _debug_msg_short_rho(True, 0, input_state) + + rho1 = np.zeros_like(input_state, dtype=np.complex128) + np.fill_diagonal(rho1, input_state.diagonal()) + + _debug_msg_short_rho(True, 1, rho1) + + rho3 = input_state - rho1 + _debug_msg_short_rho(True, 3, rho3) + + # product_0_1, product_1_1, product_1_3 = executor.map( + # ops.product, [rho, rho1, rho1], [rho1, rho1, rho3] + # ) + + product_0_1 = ops.product(input_state, rho1) + logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_0_1), product_0_1) + + product_1_1 = ops.product(rho1, rho1) + logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_1_1), product_1_1) + + product_1_3 = ops.product(rho1, rho3) + logger.debug("Product RHO1 RHO3 type: {} value: {}", type(product_1_3), product_1_3) + + optimization_epochs = 20 * size * size * sub_sys_size + + corrections_list: list[Correction] = [] + correction_counter = 0 + + limiter_product_1_3 = product_1_3 + logger.info("Starting optimization...") + + for idx in range(steps): + is_log_iter = bool(idx % log_every_epochs == 0) + + if is_log_iter: + logger.debug("Optimization epoch: {}, product_1_3: {}", idx, product_1_3) + + if len(corrections_list) >= corrections: + break + + if corrections_list and corrections_list[-1].value <= precision: + break + + rho2 = mode.random(size, sub_sys_size) + _debug_msg_short_rho(is_log_iter, 2, rho2) + + product_2_3 = ops.product(rho2, rho3) + _debug_msg_product(is_log_iter, 2, 3, product_2_3) + _debug_msg_product(is_log_iter, 1, 3, limiter_product_1_3) + + if product_2_3 > limiter_product_1_3: + if is_log_iter: + logger.debug("Optimization epoch {}", product_2_3) + + rho2 = mode.optimize(rho2, rho3, size, sub_sys_size, optimization_epochs) + + # product_0_2, product_1_2, product_2_2 = executor.map( + # ops.product, [rho, rho1, rho2], [rho2, rho2, rho2] + # ) + + product_0_2 = ops.product(input_state, rho2) + _debug_msg_product(is_log_iter, 0, 2, product_0_2) + double_product_0_2 = 2 * product_0_2 + + product_1_2 = ops.product(rho1, rho2) + _debug_msg_product(is_log_iter, 1, 2, product_1_2) + double_product_1_2 = 2 * product_1_2 + + product_2_2 = ops.product(rho2, rho2) + _debug_msg_product(is_log_iter, 2, 2, product_2_2) + double_product_2_2 = 2 * product_2_2 + + bb2 = ( + -product_0_1 + + double_product_0_2 + + double_product_1_2 + - double_product_2_2 + ) + bb3 = product_1_1 - double_product_1_2 + product_2_2 + cc1 = -bb2 / (2 * bb3) + + if 0 < cc1 <= 1: + correction_counter += 1 + + logger.debug(f"Altered statue with cc1 {cc1}") + rho1 = cc1 * rho1 + (1 - cc1) * rho2 + + rho3 = input_state - rho1 + + product_1_1 = ops.product(rho1, rho1) + + product_1_3 = product_0_1 - product_1_1 + limiter_product_1_3 = product_1_3 + + double_product_0_1 = 2 * product_0_1 + product_0_1 = double_product_0_1 + + corrections_list.append( + Correction(idx, correction_counter, ops.product(rho3, rho3)) + ) + + logger.info("Finished optimization...") + with open("list.txt", "w") as file: + print(len(corrections_list), file=file) + for c in corrections_list: + print(c, file=file) + + makeshortreport(corrections_list) + return corrections_list + + +def _debug_msg_product(is_log_iter: bool, x: int, y: int, prod: float) -> None: + if is_log_iter: + get_logger().debug("Product RHO{} RHO{}: {}, type: {}", x, y, prod, type(prod)) + + +def _debug_msg_short_rho(is_log_iter: bool, x: int, rho: Any) -> None: + if is_log_iter: + get_logger().debug( + "\n RHO{} type: {} shape: {} dtype: {}", + x, + type(rho), + rho.shape, + rho.dtype, + ) diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index f25ba89..071d3ad 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -40,7 +40,7 @@ def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" raise NotImplementedError() - def run_epoch(self, iterations: int) -> None: + def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" raise NotImplementedError() diff --git a/cssfinder/algorithm/backend/numpy/__init__.py b/cssfinder/algorithm/backend/numpy/__init__.py index cc20f28..41ad979 100644 --- a/cssfinder/algorithm/backend/numpy/__init__.py +++ b/cssfinder/algorithm/backend/numpy/__init__.py @@ -26,6 +26,6 @@ def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" raise NotImplementedError() - def run_epoch(self, iterations: int) -> None: + def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" raise NotImplementedError() diff --git a/cssfinder/algorithm/backend/numpy/c128.py b/cssfinder/algorithm/backend/numpy/c128.py index e5bad1d..133cf65 100644 --- a/cssfinder/algorithm/backend/numpy/c128.py +++ b/cssfinder/algorithm/backend/numpy/c128.py @@ -7,13 +7,32 @@ from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy import NumPy -from cssfinder.project.v1_0_0.cssfproject import Backend, Precision + +from cssfinder.io.v1_0_0.asset_loader import State +from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision @BackendBase.register(Backend.NumPy, Precision.Complex128) class NumPyC128(NumPy): """Implementation of Gilbert algorithm using numpy and complex128 precision.""" + _visibility: npt.NDArray[np.complex128] + _intermediate: npt.NDArray[np.complex128] + _corrections: list[tuple[int, int, float]] + + def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: + super().__init__(initial, mode, visibility) + self._visibility = self.visibility * initial.state + ( + 1 - self.visibility + ) * np.identity(len(initial.state), dtype=np.complex128) + self._intermediate = self.initial.state.copy() + self._corrections = [] + + self._aa4 = 2 * product(self._visibility, self._intermediate) + self._aa6 = product(self._intermediate, self._intermediate) + self._visibility_reduced = self._visibility - self._intermediate + self._dd1 = product(self._intermediate, self._visibility_reduced) + @property def state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" @@ -29,6 +48,204 @@ def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" raise NotImplementedError() - def run_epoch(self, iterations: int) -> None: + def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" - raise NotImplementedError() + + depth = self.initial.depth + quantity = self.initial.quantity + epochs = 20 * depth * depth * quantity + + for iteration_index in range(iterations): + alternative_state = random_d_fs(depth, quantity) + + if product(alternative_state, self._visibility_reduced) > self._dd1: + alternative_state = optimize_d_fs( + alternative_state, self._visibility_reduced, depth, quantity, epochs + ) + + aa3 = product(alternative_state, alternative_state) + aa2 = 2 * product(self._visibility, alternative_state) + aa5 = 2 * product(self._intermediate, alternative_state) + + c = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) + + if 0 <= c <= 1: + + self._intermediate = ( + c * self._intermediate + (1 - c) * alternative_state + ) + + self._visibility_reduced = self._visibility - self._intermediate + self._aa4 = 2 * product(self._visibility, self._intermediate) + self._aa6 = product(self._intermediate, self._intermediate) + self._dd1 = self._aa4 / 2 - self._aa6 + + self._corrections.append( + ( + epoch_index * iterations + iteration_index, + len(self._corrections), + float( + product( + self._visibility_reduced, + self._visibility_reduced, + ) + ), + ) + ) + + +# def create_rho_1(prefix, rho, mode, d1, vis): +# rhoa = np.zeros(rho.shape, dtype=np.complex128) +# np.fill_diagonal(rhoa, rho.diagonal()) +# return rhoa + + +# @jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] +) -> np.float64: + """Calculate scalar product of two matrices.""" + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + + +# @jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Normalization of a vector.""" + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + return mtx / val # type: ignore + + +# @jit(nopython=True, nogil=True, cache=True) +def get_random_haar(size: int) -> npt.NDArray[np.complex128]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, size) + imaginary = np.random.normal(0, 1, size) + return real + 1j * imaginary + + +# @jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Build a projection from a vector.""" + return np.outer(mtx1, np.conj(mtx1)) + + +# @jit(nopython=True, nogil=True, cache=True) +def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: + """Random n quDit state.""" + vector = normalize(get_random_haar(size)) + + for _ in range(sub_sys_size - 1): + idx_vector = normalize(get_random_haar(size)) + vector = np.outer(vector, idx_vector).flatten() + + vector = project(vector) + return vector # type: ignore + + +# @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) +def optimize_d_fs( + rho2: npt.NDArray[np.complex128], + rho3: npt.NDArray[np.complex128], + size: int, + sub_sys_size: int, + epochs: int, +) -> npt.NDArray[np.complex128]: + """Optimize implementation for FSnQd mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(size, sub_sys_size, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + + idx_mod = idx % int(sub_sys_size) + unitary = random_unitary_d_fs(size, sub_sys_size, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2 + + +# @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) +def random_unitary_d_fs( + size: int, sub_sys_size: int, idx: int +) -> npt.NDArray[np.complex128]: + """N quDits.""" + value = _random_unitary_d_fs_val(size) + mtx = expand_d_fs(value, size, sub_sys_size, idx) + return mtx + + +# @jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(size: int) -> npt.NDArray[np.complex128]: + real = np.cos(0.01 * np.pi) + imag = 1j * np.sin(0.01 * np.pi) + value = real + imag - 1 + + random_mtx = random_d_fs(size, 1) + identity_mtx = np.identity(size).astype(np.complex128) + value = np.add(np.multiply(value, random_mtx), identity_mtx) + return value + + +# @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) +def expand_d_fs( # pylint: disable=invalid-name + value: npt.NDArray[np.complex128], + size: int, + sub_sys_size: int, + idx: int, +) -> npt.NDArray[np.complex128]: + """Expand an operator to n quDits.""" + size_1 = int(size**idx) + identity_1 = np.identity(size_1).astype(np.complex128) + + size_2 = int(size ** (sub_sys_size - idx - 1)) + identity_2 = np.identity(size_2).astype(np.complex128) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + return cast(npt.NDArray[np.complex128], kronecker_2) + + +# @jit(nopython=True, nogil=True, cache=True) +# @jit(forceobj=True) +def kronecker( + mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] +) -> npt.NDArray[np.complex128]: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + return out_mtx.reshape(output_shape) + + +# @jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] +) -> npt.NDArray[np.complex128]: + """Sandwich an operator with a unitary.""" + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + return rho2a # type: ignore diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 4bd1d06..f7fef02 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -39,7 +39,7 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: (epoch_index + 1) / epochs, ) # Run N iterations of algorithm without checking stop conditions. - self.backend.run_epoch(iterations) + self.backend.run_epoch(iterations, epoch_index) iterations_executed = (epoch_index + 1) * iterations self.logger.debug( diff --git a/cssfinder/io/v1_0_0/asset_loader.py b/cssfinder/io/v1_0_0/asset_loader.py index 32c55ff..e2ae5a1 100644 --- a/cssfinder/io/v1_0_0/asset_loader.py +++ b/cssfinder/io/v1_0_0/asset_loader.py @@ -9,6 +9,7 @@ from typing import ClassVar import numpy as np +import numpy.typing as npt from packaging.version import Version from pydantic import BaseModel @@ -16,7 +17,6 @@ from cssfinder.io.matrix import MatrixIO from cssfinder.log import get_logger from cssfinder.project.v1_0_0.cssfproject import CSSFProjectV100 -from cssfinder.types import MatrixC128T class AssetLoader: @@ -79,7 +79,7 @@ def load_initial_state(self, force_squash: bool = False) -> State: ) return State(state=mtx, depth=depth, quantity=quantity) - def _check_matrix_shape(self, mtx: MatrixC128T) -> None: + def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: """Check if ndarray conforms shape rules.""" logger = get_logger() @@ -188,7 +188,7 @@ def load_projection(self) -> None: class State(BaseModel): """State matrix and system dimensions.""" - state: MatrixC128T + state: npt.NDArray[np.complex128] """Path to file containing state matrix.""" depth: int @@ -207,7 +207,7 @@ class State(BaseModel): class IncorrectMatrixShape(ValueError): """Raised when matrix has incorrect shape.""" - def __init__(self, mtx: MatrixC128T) -> None: + def __init__(self, mtx: npt.NDArray[np.complex128]) -> None: super().__init__() self.mtx = mtx diff --git a/cssfinder/ops.py b/cssfinder/ops.py index 768e617..720f886 100644 --- a/cssfinder/ops.py +++ b/cssfinder/ops.py @@ -8,19 +8,16 @@ from cssfinder.types import MatrixC128T -# @jit(nopython=True, nogil=True, cache=True) -def product(mtx1: MatrixC128T, mtx2: MatrixC128T) -> float: - """Scalar product of two matrices.""" - k = np.trace(np.dot(mtx1, mtx2)) # matmul replaced with dot - return float(np.real(k)) +def product(matrix1, matrix2): + return np.trace(np.dot(matrix1, matrix2)).real # @jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: MatrixC128T) -> MatrixC128T: +def normalize(matrix: MatrixC128T) -> MatrixC128T: """Normalization of a vector.""" - mtx2 = np.dot(mtx, np.conj(mtx)) - val = np.sqrt(np.real(mtx2)) - return mtx / val # type: ignore + matrix2 = np.dot(matrix, np.conj(matrix)) + length = np.sqrt(np.real(matrix2)) + return matrix / length # type: ignore # @jit(nopython=True, nogil=True, cache=True) diff --git a/cssfinder/report.py b/cssfinder/report.py new file mode 100644 index 0000000..3c834c0 --- /dev/null +++ b/cssfinder/report.py @@ -0,0 +1,86 @@ +from __future__ import annotations + +import math +import sys + + +def invert(c, a): + return 1 / (c - a) + + +def listshift(l1, a1): + return list(map(lambda x: x - a1, l1)) + + +def cov(l1, l2): + return mean( + list( + map( + lambda x1, x2: x1 * x2, listshift(l1, mean(l1)), listshift(l2, mean(l2)) + ) + ) + ) + + +def trend(l1, l2): + l1a = list(map(math.log, l1)) + l2a = list(map(math.log, l2)) + return cov(l1a, l2a) / cov(l1a, l1a) + + +def offset(l1, l2): + l1a = list(map(math.log, l1)) + l2a = list(map(math.log, l2)) + return mean(l2a) - mean(l1a) * trend(l1, l2) + + +def findmaximum(ll): + list1 = list(map(lambda i: i.value, ll)) + list2 = list1[len(list1) // 2 :] + + aaa1 = list2[-1] - 0.000001 + step1 = aaa1 / 10000 + + while R(list2, aaa1 - step1) > R(list2, aaa1) and aaa1 > 0: + aaa1 = aaa1 - step1 + + return aaa1 + + +def R(l: list, a: float) -> float: + ll1 = list(map(lambda x1: invert(x1, a), l)) + return ( + mean(list(map(lambda x1, x2: x1 * x2, ll1, list(range(len(l)))))) + - mean(ll1) * mean(list(range(len(l)))) + ) / math.sqrt( + (mean(list(map(lambda x: x**2, ll1))) - mean(ll1) ** 2) + * ( + mean(list(map(lambda x: x**2, list(range(len(l)))))) + - mean(list(range(len(l)))) ** 2 + ) + ) + + +def mean(l): + return sum(l) / len(l) + + +def makeshortreport(ll): + ll10 = list(map(lambda i: i.iteration_number, ll)) + ll11 = list(map(lambda i: i.correction_number, ll)) + kk = findmaximum(ll) + ll12 = [] + for j1 in range(int(2 * len(ll) / 3), len(ll)): + ll12.append(ll[j1][2]) + + sys.stdout.write("Basing on decay, the squared HS distance is estimsated to be ") + sys.stdout.write(str(kk)) + sys.stdout.write(" (R=") + sys.stdout.write(str(R(ll12, kk))) + sys.stdout.write(")\n") + sys.stdout.write("The dependence between corrs and trail is approximately:\n") + sys.stdout.write("corr=trail^") + sys.stdout.write(str(trend(ll10, ll11))) + sys.stdout.write("*") + sys.stdout.write(str(math.exp(offset(ll10, ll11)))) + sys.stdout.write("\n-----------------\n") From c6c08a12fee9148805e2ac48d63060365e82104c Mon Sep 17 00:00:00 2001 From: Argmaster Date: Tue, 21 Feb 2023 22:45:46 +0100 Subject: [PATCH 036/227] Implement complex128 numpy backend --- .pre-commit-config.yaml | 22 +- cssfinder/__init__.py | 21 + cssfinder/_gilbert.py | 244 ---- cssfinder/algorithm/__init__.py | 25 + cssfinder/algorithm/backend/__init__.py | 45 + cssfinder/algorithm/backend/base.py | 56 +- cssfinder/algorithm/backend/numpy/__init__.py | 52 +- .../algorithm/backend/numpy/_impl/__init__.py | 26 + .../numpy/{c128.py => _impl/_complex128.py} | 131 +- cssfinder/algorithm/backend/numpy/base.py | 137 ++ .../algorithm/backend/numpy/complex128.py | 36 + cssfinder/algorithm/backend/numpy/impl.py | 102 ++ cssfinder/algorithm/gilbert.py | 33 +- cssfinder/api.py | 74 -- cssfinder/cli.py | 88 +- cssfinder/constants.py | 21 + cssfinder/io/__init__.py | 25 + cssfinder/io/{v1_0_0 => }/asset_loader.py | 34 +- cssfinder/io/matrix.py | 27 +- cssfinder/io/v1_0_0/__init__.py | 0 cssfinder/log.py | 21 + cssfinder/modes.py | 192 --- cssfinder/ops.py | 145 --- cssfinder/project/__init__.py | 43 +- cssfinder/project/base.py | 169 --- cssfinder/project/{v1_0_0 => }/cssfproject.py | 82 +- cssfinder/project/v1_0_0/__init__.py | 0 cssfinder/report.py | 86 -- cssfinder/task.py | 92 -- cssfinder/types.py | 16 - poetry.lock | 1153 +++++++++++++++-- pyproject.toml | 38 +- requirements-dev.txt | 4 - requirements.txt | 1 - scripts/templates/MIT.md.jinja2 | 19 + 35 files changed, 1902 insertions(+), 1358 deletions(-) delete mode 100644 cssfinder/_gilbert.py create mode 100644 cssfinder/algorithm/backend/numpy/_impl/__init__.py rename cssfinder/algorithm/backend/numpy/{c128.py => _impl/_complex128.py} (54%) create mode 100644 cssfinder/algorithm/backend/numpy/base.py create mode 100644 cssfinder/algorithm/backend/numpy/complex128.py create mode 100644 cssfinder/algorithm/backend/numpy/impl.py delete mode 100644 cssfinder/api.py rename cssfinder/io/{v1_0_0 => }/asset_loader.py (83%) delete mode 100644 cssfinder/io/v1_0_0/__init__.py delete mode 100644 cssfinder/modes.py delete mode 100644 cssfinder/ops.py delete mode 100644 cssfinder/project/base.py rename cssfinder/project/{v1_0_0 => }/cssfproject.py (64%) delete mode 100644 cssfinder/project/v1_0_0/__init__.py delete mode 100644 cssfinder/report.py delete mode 100644 cssfinder/task.py delete mode 100644 cssfinder/types.py delete mode 100644 requirements-dev.txt delete mode 100644 requirements.txt create mode 100644 scripts/templates/MIT.md.jinja2 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 97c5f6c..2fb6525 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,7 +1,25 @@ exclude: '^(\.tox|\.env|dist|\.vscode)(/|$)' repos: + - repo: https://github.com/Argmaster/autocopyright + rev: "v1.1.0" + hooks: + - id: autocopyright + args: + [ + -s, + "#", + -d, + cssfinder, + -g, + "*.py", + -g, + "*.pyi", + -l, + "./scripts/templates/MIT.md.jinja2", + ] + - repo: https://github.com/PyCQA/autoflake - rev: "v2.0.0" + rev: "v2.0.1" hooks: - id: autoflake args: @@ -37,7 +55,7 @@ repos: args: [-a, "from __future__ import annotations", cssfinder] - repo: https://github.com/ambv/black - rev: "22.12.0" + rev: "23.1.0" hooks: - id: black diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index cedad4a..7fd7251 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """CSSFinder (Closest Separable State Finder) is a package containing implementation of Gilbert algorithm.""" diff --git a/cssfinder/_gilbert.py b/cssfinder/_gilbert.py deleted file mode 100644 index e2e8c5c..0000000 --- a/cssfinder/_gilbert.py +++ /dev/null @@ -1,244 +0,0 @@ -from __future__ import annotations - -import logging - -# from concurrent.futures import ThreadPoolExecutor -from dataclasses import dataclass -from time import perf_counter -from typing import Any, Optional - -import numpy as np - -from cssfinder import ops -from cssfinder.log import get_logger -from cssfinder.modes import Mode, ModeABC -from cssfinder.report import makeshortreport -from cssfinder.types import MatrixC128T, MatrixT - -np.random.seed(0) - - -class Gilbert: - """Gilbert algorithm implementation.""" - - def __init__( - self, - mode: Mode, - initial_state: MatrixT, - size: Optional[int], - sub_sys_size: Optional[int], - ) -> None: - self.mode = ModeABC.use(mode)() - self.initial_state = initial_state - self.logger = get_logger() - - self.logger.debug("Created Gilbert algorithm using mode: {!r}", self.mode) - self.logger.debug( - "Using initial matrix: shape {!r} dtype {}", - self.initial_state.shape, - self.initial_state.dtype, - ) - - if sub_sys_size is None: - if size is None: - ( - self.size, - self.sub_sys_size, - ) = self.mode.detect_dims_none_given(self.total_system_size) - else: - ( - self.size, - self.sub_sys_size, - ) = self.mode.detect_dims_size_given(size, self.total_system_size) - - @property - def total_system_size(self) -> int: - """Total size of system determined from initial state first axis size.""" - return len(self.initial_state) - - def run(self, visibility: float, steps: int, corrections: int) -> None: - total_sys_size = self.total_system_size - identity_mtx = np.identity(total_sys_size) - state = self.initial_state - inverse_visibility = np.subtract(1, visibility) - - rho = np.add( - np.multiply(visibility, state), - np.divide( - np.multiply(inverse_visibility, identity_mtx), - total_sys_size, - ), - ) - - start_time = perf_counter() - _gilbert( - rho.astype(np.complex128), - self.mode, - steps, - corrections, - self.size, - self.sub_sys_size, - 0.0000001, - ) - end_time = perf_counter() - logging.critical("Optimization took {:.0f}s", end_time - start_time) - - -@dataclass -class Correction: - - iteration_number: int - correction_number: int - value: float - - -def _gilbert( - input_state: MatrixC128T, - mode: ModeABC, - steps: int, - corrections: int, - size: int, - sub_sys_size: int, - precision: float, - log_every_epochs: int = 5000, -) -> list[Correction]: - - # executor = ThreadPoolExecutor(max_workers=4) - - logger = get_logger() - logger.debug("==================") - logger.debug(" _gilbert params:") - logger.debug("==================") - logger.debug(" mode = {}", mode) - logger.debug(" steps = {}", steps) - logger.debug(" corrections = {}", corrections) - logger.debug(" size = {}", size) - logger.debug(" sub_sys_size = {}", sub_sys_size) - logger.debug(" precision = {}", precision) - logger.debug("==================") - - _debug_msg_short_rho(True, 0, input_state) - - rho1 = np.zeros_like(input_state, dtype=np.complex128) - np.fill_diagonal(rho1, input_state.diagonal()) - - _debug_msg_short_rho(True, 1, rho1) - - rho3 = input_state - rho1 - _debug_msg_short_rho(True, 3, rho3) - - # product_0_1, product_1_1, product_1_3 = executor.map( - # ops.product, [rho, rho1, rho1], [rho1, rho1, rho3] - # ) - - product_0_1 = ops.product(input_state, rho1) - logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_0_1), product_0_1) - - product_1_1 = ops.product(rho1, rho1) - logger.debug("Product RHO0 RHO1 type: {} value: {}", type(product_1_1), product_1_1) - - product_1_3 = ops.product(rho1, rho3) - logger.debug("Product RHO1 RHO3 type: {} value: {}", type(product_1_3), product_1_3) - - optimization_epochs = 20 * size * size * sub_sys_size - - corrections_list: list[Correction] = [] - correction_counter = 0 - - limiter_product_1_3 = product_1_3 - logger.info("Starting optimization...") - - for idx in range(steps): - is_log_iter = bool(idx % log_every_epochs == 0) - - if is_log_iter: - logger.debug("Optimization epoch: {}, product_1_3: {}", idx, product_1_3) - - if len(corrections_list) >= corrections: - break - - if corrections_list and corrections_list[-1].value <= precision: - break - - rho2 = mode.random(size, sub_sys_size) - _debug_msg_short_rho(is_log_iter, 2, rho2) - - product_2_3 = ops.product(rho2, rho3) - _debug_msg_product(is_log_iter, 2, 3, product_2_3) - _debug_msg_product(is_log_iter, 1, 3, limiter_product_1_3) - - if product_2_3 > limiter_product_1_3: - if is_log_iter: - logger.debug("Optimization epoch {}", product_2_3) - - rho2 = mode.optimize(rho2, rho3, size, sub_sys_size, optimization_epochs) - - # product_0_2, product_1_2, product_2_2 = executor.map( - # ops.product, [rho, rho1, rho2], [rho2, rho2, rho2] - # ) - - product_0_2 = ops.product(input_state, rho2) - _debug_msg_product(is_log_iter, 0, 2, product_0_2) - double_product_0_2 = 2 * product_0_2 - - product_1_2 = ops.product(rho1, rho2) - _debug_msg_product(is_log_iter, 1, 2, product_1_2) - double_product_1_2 = 2 * product_1_2 - - product_2_2 = ops.product(rho2, rho2) - _debug_msg_product(is_log_iter, 2, 2, product_2_2) - double_product_2_2 = 2 * product_2_2 - - bb2 = ( - -product_0_1 - + double_product_0_2 - + double_product_1_2 - - double_product_2_2 - ) - bb3 = product_1_1 - double_product_1_2 + product_2_2 - cc1 = -bb2 / (2 * bb3) - - if 0 < cc1 <= 1: - correction_counter += 1 - - logger.debug(f"Altered statue with cc1 {cc1}") - rho1 = cc1 * rho1 + (1 - cc1) * rho2 - - rho3 = input_state - rho1 - - product_1_1 = ops.product(rho1, rho1) - - product_1_3 = product_0_1 - product_1_1 - limiter_product_1_3 = product_1_3 - - double_product_0_1 = 2 * product_0_1 - product_0_1 = double_product_0_1 - - corrections_list.append( - Correction(idx, correction_counter, ops.product(rho3, rho3)) - ) - - logger.info("Finished optimization...") - with open("list.txt", "w") as file: - print(len(corrections_list), file=file) - for c in corrections_list: - print(c, file=file) - - makeshortreport(corrections_list) - return corrections_list - - -def _debug_msg_product(is_log_iter: bool, x: int, y: int, prod: float) -> None: - if is_log_iter: - get_logger().debug("Product RHO{} RHO{}: {}, type: {}", x, y, prod, type(prod)) - - -def _debug_msg_short_rho(is_log_iter: bool, x: int, rho: Any) -> None: - if is_log_iter: - get_logger().debug( - "\n RHO{} type: {} shape: {} dtype: {}", - x, - type(rho), - rho.shape, - rho.dtype, - ) diff --git a/cssfinder/algorithm/__init__.py b/cssfinder/algorithm/__init__.py index e69de29..db872cc 100644 --- a/cssfinder/algorithm/__init__.py +++ b/cssfinder/algorithm/__init__.py @@ -0,0 +1,25 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains implementations of Gilbert algorithm.""" + + +from __future__ import annotations diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index e69de29..1b32755 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -0,0 +1,45 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Backend is an implementation of Gilbert algorithm implemented with specific tools and +supporting various precisions of operation.""" + + +from __future__ import annotations + +from typing import Type + +from cssfinder.algorithm.backend.base import BackendBase +from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 +from cssfinder.project.cssfproject import Backend, Precision + + +def new(backend: Backend, precision: Precision) -> Type[BackendBase]: + """Select one of the backends with fixed precision.""" + if backend == Backend.NumPy: + if precision == Precision.Complex128: + return NumPyC128 + + raise UnsupportedBackendError(f"Backend {backend.name!r} not supported.") + + +class UnsupportedBackendError(Exception): + """Raised for unsupported backend type.""" diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index 071d3ad..b1ad986 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -1,16 +1,37 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains base class for creating Gilbert algorithm backends (concrete implementations) and exceptions which are expected to be raised from backends.""" from __future__ import annotations -from typing import Callable, Type, TypeVar +from typing import Type, TypeVar import numpy as np import numpy.typing as npt -from cssfinder.io.v1_0_0.asset_loader import State -from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision +from cssfinder.io.asset_loader import State +from cssfinder.project.cssfproject import AlgoMode, Backend, Precision BackendT = TypeVar("BackendT", bound="BackendBase") @@ -18,7 +39,7 @@ class BackendBase: """Gilbert algorithm backend (implementation).""" - backend_index: dict[tuple[Backend, Precision], Type[BackendBase]] + backend_index: dict[tuple[Backend, Precision], Type[BackendBase]] = {} def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: self.initial = initial @@ -43,30 +64,3 @@ def corrections_count(self) -> int: def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" raise NotImplementedError() - - @classmethod - def select(cls, backend: Backend, precision: Precision) -> Type[BackendBase]: - """Select one of the backends with fixed precision.""" - try: - return cls.backend_index[(backend, precision)] - except KeyError as exc: - raise UnsupportedBackendError( - f"Backend {backend.name!r} not supported." - ) from exc - - @classmethod - def register( - cls, backend: Backend, precision: Precision - ) -> Callable[[Type[BackendT]], Type[BackendT]]: - """Register backend class as backend implementation.""" - - def _register(backend_cls: Type[BackendT]) -> Type[BackendT]: - cls.backend_index[(backend, precision)] = backend_cls - - return backend_cls - - return _register - - -class UnsupportedBackendError(Exception): - """Raised for unsupported backend type.""" diff --git a/cssfinder/algorithm/backend/numpy/__init__.py b/cssfinder/algorithm/backend/numpy/__init__.py index 41ad979..ee9be39 100644 --- a/cssfinder/algorithm/backend/numpy/__init__.py +++ b/cssfinder/algorithm/backend/numpy/__init__.py @@ -1,31 +1,25 @@ -"""This module contains.""" +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains implementation of Gilbert created using numpy package.""" -from __future__ import annotations - -import numpy as np -import numpy.typing as npt - -from cssfinder.algorithm.backend.base import BackendBase - - -class NumPy(BackendBase): - """Implementation of Gilbert algorithm using python numpy library.""" - @property - def state(self) -> npt.NDArray[np.complex128]: - """Return current system state with all optimizations applied.""" - raise NotImplementedError() - - @property - def corrections(self) -> list[tuple[int, int, float]]: - """Return list of all corrections found during optimization.""" - raise NotImplementedError() - - @property - def corrections_count(self) -> int: - """Return number of all corrections found during optimization.""" - raise NotImplementedError() - - def run_epoch(self, iterations: int, epoch_index: int) -> None: - """Run sequence of iterations without stopping to check any stop conditions.""" - raise NotImplementedError() +from __future__ import annotations diff --git a/cssfinder/algorithm/backend/numpy/_impl/__init__.py b/cssfinder/algorithm/backend/numpy/_impl/__init__.py new file mode 100644 index 0000000..4ed7288 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/_impl/__init__.py @@ -0,0 +1,26 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Groups modules containing implementation of Gilbert algorithm utilities with +different precisions.""" + + +from __future__ import annotations diff --git a/cssfinder/algorithm/backend/numpy/c128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py similarity index 54% rename from cssfinder/algorithm/backend/numpy/c128.py rename to cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 133cf65..0b11c23 100644 --- a/cssfinder/algorithm/backend/numpy/c128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -1,98 +1,33 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains implementation of Gilbert algorithm using numpy and complex128 precision.""" from __future__ import annotations +from typing import cast + import numpy as np import numpy.typing as npt - -from cssfinder.algorithm.backend.base import BackendBase -from cssfinder.algorithm.backend.numpy import NumPy - -from cssfinder.io.v1_0_0.asset_loader import State -from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision - - -@BackendBase.register(Backend.NumPy, Precision.Complex128) -class NumPyC128(NumPy): - """Implementation of Gilbert algorithm using numpy and complex128 precision.""" - - _visibility: npt.NDArray[np.complex128] - _intermediate: npt.NDArray[np.complex128] - _corrections: list[tuple[int, int, float]] - - def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: - super().__init__(initial, mode, visibility) - self._visibility = self.visibility * initial.state + ( - 1 - self.visibility - ) * np.identity(len(initial.state), dtype=np.complex128) - self._intermediate = self.initial.state.copy() - self._corrections = [] - - self._aa4 = 2 * product(self._visibility, self._intermediate) - self._aa6 = product(self._intermediate, self._intermediate) - self._visibility_reduced = self._visibility - self._intermediate - self._dd1 = product(self._intermediate, self._visibility_reduced) - - @property - def state(self) -> npt.NDArray[np.complex128]: - """Return current system state with all optimizations applied.""" - raise NotImplementedError() - - @property - def corrections(self) -> list[tuple[int, int, float]]: - """Return list of all corrections found during optimization.""" - raise NotImplementedError() - - @property - def corrections_count(self) -> int: - """Return number of all corrections found during optimization.""" - raise NotImplementedError() - - def run_epoch(self, iterations: int, epoch_index: int) -> None: - """Run sequence of iterations without stopping to check any stop conditions.""" - - depth = self.initial.depth - quantity = self.initial.quantity - epochs = 20 * depth * depth * quantity - - for iteration_index in range(iterations): - alternative_state = random_d_fs(depth, quantity) - - if product(alternative_state, self._visibility_reduced) > self._dd1: - alternative_state = optimize_d_fs( - alternative_state, self._visibility_reduced, depth, quantity, epochs - ) - - aa3 = product(alternative_state, alternative_state) - aa2 = 2 * product(self._visibility, alternative_state) - aa5 = 2 * product(self._intermediate, alternative_state) - - c = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) - - if 0 <= c <= 1: - - self._intermediate = ( - c * self._intermediate + (1 - c) * alternative_state - ) - - self._visibility_reduced = self._visibility - self._intermediate - self._aa4 = 2 * product(self._visibility, self._intermediate) - self._aa6 = product(self._intermediate, self._intermediate) - self._dd1 = self._aa4 / 2 - self._aa6 - - self._corrections.append( - ( - epoch_index * iterations + iteration_index, - len(self._corrections), - float( - product( - self._visibility_reduced, - self._visibility_reduced, - ) - ), - ) - ) - +from numba import jit # def create_rho_1(prefix, rho, mode, d1, vis): # rhoa = np.zeros(rho.shape, dtype=np.complex128) @@ -100,7 +35,7 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: # return rhoa -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def product( matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] ) -> np.float64: @@ -108,7 +43,7 @@ def product( return np.trace(np.dot(matrix1, matrix2)).real # type: ignore -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: """Normalization of a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) @@ -116,7 +51,7 @@ def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: return mtx / val # type: ignore -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def get_random_haar(size: int) -> npt.NDArray[np.complex128]: """Generate a random vector with Haar measure.""" real = np.random.normal(0, 1, size) @@ -124,13 +59,13 @@ def get_random_haar(size: int) -> npt.NDArray[np.complex128]: return real + 1j * imaginary -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: """Build a projection from a vector.""" return np.outer(mtx1, np.conj(mtx1)) -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: """Random n quDit state.""" vector = normalize(get_random_haar(size)) @@ -161,7 +96,6 @@ def optimize_d_fs( rotated_2 = rotate(rho2, unitary) for idx in range(epochs): - idx_mod = idx % int(sub_sys_size) unitary = random_unitary_d_fs(size, sub_sys_size, idx_mod) rotated_2 = rotate(rho2, unitary) @@ -173,7 +107,6 @@ def optimize_d_fs( rotated_2 = rotate(rho2, unitary) while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) product_rot2_3 = product(rotated_2, rho3) @@ -192,7 +125,7 @@ def random_unitary_d_fs( return mtx -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def _random_unitary_d_fs_val(size: int) -> npt.NDArray[np.complex128]: real = np.cos(0.01 * np.pi) imag = 1j * np.sin(0.01 * np.pi) @@ -206,7 +139,7 @@ def _random_unitary_d_fs_val(size: int) -> npt.NDArray[np.complex128]: # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) -def expand_d_fs( # pylint: disable=invalid-name +def expand_d_fs( value: npt.NDArray[np.complex128], size: int, sub_sys_size: int, @@ -241,7 +174,7 @@ def kronecker( return out_mtx.reshape(output_shape) -# @jit(nopython=True, nogil=True, cache=True) +@jit(nopython=True, nogil=True, cache=True) def rotate( rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py new file mode 100644 index 0000000..fd56e0c --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -0,0 +1,137 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""This module contains numpy based implementation of Gilbert algorithm but not bound to +specific precision.""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt + +from cssfinder.algorithm.backend.base import BackendBase +from cssfinder.algorithm.backend.numpy.impl import Implementation +from cssfinder.io.asset_loader import State +from cssfinder.project.cssfproject import AlgoMode + + +class NumPyBase(BackendBase): + """Implementation of Gilbert algorithm using python numpy library.""" + + _visibility: npt.NDArray[np.complex128] + _intermediate: npt.NDArray[np.complex128] + _corrections: list[tuple[int, int, float]] + impl: Implementation + + def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: + super().__init__(initial, mode, visibility) + self._visibility = self._create_visibility_matrix(initial) + self._intermediate = self.initial.state.copy() + self._corrections = [] + + self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) + self._aa6 = self.impl.product(self._intermediate, self._intermediate) + self._visibility_reduced = self._visibility - self._intermediate + self._dd1 = self.impl.product(self._intermediate, self._visibility_reduced) + + def _create_visibility_matrix(self, initial: State) -> npt.NDArray[np.complex128]: + return self.visibility * initial.state + (1 - self.visibility) * np.identity( + len(initial.state), dtype=np.complex128 + ) + + @property + def state(self) -> npt.NDArray[np.complex128]: + """Return current system state with all optimizations applied.""" + return self._intermediate + + @property + def corrections(self) -> list[tuple[int, int, float]]: + """Return list of all corrections found during optimization.""" + return self._corrections + + @property + def corrections_count(self) -> int: + """Return number of all corrections found during optimization.""" + return len(self._corrections) + + def run_epoch(self, iterations: int, epoch_index: int) -> None: + """Run sequence of iterations without stopping to check any stop conditions.""" + + depth = self.initial.depth + quantity = self.initial.quantity + + quantity = self.initial.quantity + epochs = 20 * depth * depth * quantity + + for iteration_index in range(iterations): + alternative_state = self.impl.random_d_fs(depth, quantity) + + if ( + self.impl.product(alternative_state, self._visibility_reduced) + > self._dd1 + ): + self._update_state( + alternative_state, iterations, epoch_index, epochs, iteration_index + ) + + def _update_state( + self, + alternative_state: npt.NDArray[np.complex128], + iterations: int, + epoch_index: int, + epochs: int, + iteration_index: int, + ) -> None: + depth = self.initial.depth + quantity = self.initial.quantity + + alternative_state = self.impl.optimize_d_fs( + alternative_state, self._visibility_reduced, depth, quantity, epochs + ) + + aa3 = self.impl.product(alternative_state, alternative_state) + aa2 = 2 * self.impl.product(self._visibility, alternative_state) + aa5 = 2 * self.impl.product(self._intermediate, alternative_state) + + coef = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) + + if 0 <= coef <= 1: + self._intermediate = ( + coef * self._intermediate + (1 - coef) * alternative_state + ) + + self._visibility_reduced = self._visibility - self._intermediate + self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) + self._aa6 = self.impl.product(self._intermediate, self._intermediate) + self._dd1 = self._aa4 / 2 - self._aa6 + + self._corrections.append( + ( + epoch_index * iterations + iteration_index, + len(self._corrections), + float( + self.impl.product( + self._visibility_reduced, + self._visibility_reduced, + ) + ), + ) + ) diff --git a/cssfinder/algorithm/backend/numpy/complex128.py b/cssfinder/algorithm/backend/numpy/complex128.py new file mode 100644 index 0000000..cc029c5 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/complex128.py @@ -0,0 +1,36 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Numpy backend with fixed precision of complex 128-bit.""" + +from __future__ import annotations + +from typing import cast + +from cssfinder.algorithm.backend.numpy._impl import _complex128 +from cssfinder.algorithm.backend.numpy.base import NumPyBase +from cssfinder.algorithm.backend.numpy.impl import Implementation + + +class NumPyC128(NumPyBase): + """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" + + impl: Implementation = cast(Implementation, _complex128) diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py new file mode 100644 index 0000000..a0fda0f --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -0,0 +1,102 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""This file contains declaration of Implementation protocol for numpy based +backends.""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt +from typing_extensions import Protocol + + +class Implementation(Protocol): + """Implementation of Gilbert algorithm utilities with specific precision.""" + + @staticmethod + def product( + matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] + ) -> np.float64: + """Calculate scalar product of two matrices.""" + ... + + @staticmethod + def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Normalization of a vector.""" + ... + + @staticmethod + def get_random_haar(size: int) -> npt.NDArray[np.complex128]: + """Generate a random vector with Haar measure.""" + ... + + @staticmethod + def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Build a projection from a vector.""" + ... + + @staticmethod + def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: + """Random n quDit state.""" + ... + + @staticmethod + def optimize_d_fs( + rho2: npt.NDArray[np.complex128], + rho3: npt.NDArray[np.complex128], + size: int, + sub_sys_size: int, + epochs: int, + ) -> npt.NDArray[np.complex128]: + """Optimize implementation for FSnQd mode.""" + ... + + @staticmethod + def random_unitary_d_fs( + size: int, sub_sys_size: int, idx: int + ) -> npt.NDArray[np.complex128]: + """N quDits.""" + ... + + @staticmethod + def expand_d_fs( # pylint: disable=invalid-name + value: npt.NDArray[np.complex128], + size: int, + sub_sys_size: int, + idx: int, + ) -> npt.NDArray[np.complex128]: + """Expand an operator to n quDits.""" + ... + + @staticmethod + def kronecker( + mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] + ) -> npt.NDArray[np.complex128]: + """Kronecker Product.""" + ... + + @staticmethod + def rotate( + rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] + ) -> npt.NDArray[np.complex128]: + """Sandwich an operator with a unitary.""" + ... diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index f7fef02..0a0e667 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -1,11 +1,32 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains public interface of Gilbert algorithm.""" from __future__ import annotations -from cssfinder.algorithm.backend.base import BackendBase -from cssfinder.io.v1_0_0.asset_loader import State +from cssfinder.algorithm import backend as _backend +from cssfinder.io.asset_loader import State from cssfinder.log import get_logger -from cssfinder.project.v1_0_0.cssfproject import AlgoMode, Backend, Precision +from cssfinder.project.cssfproject import AlgoMode, Backend, Precision class Gilbert: @@ -24,7 +45,7 @@ def __init__( self.mode = mode self.precision = precision self.visibility = visibility - backend_type = BackendBase.select(backend, self.precision) + backend_type = _backend.new(backend, self.precision) self.backend = backend_type(self.initial, self.mode, self.visibility) def run(self, epochs: int, iterations: int, max_corrections: int) -> None: @@ -51,5 +72,7 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: ) # Check if we already reached expected number of corrections if self.backend.corrections_count >= max_corrections: - self.logger.info("") + self.logger.info( + "Reached expected maximal number of corrections {}", max_corrections + ) break diff --git a/cssfinder/api.py b/cssfinder/api.py deleted file mode 100644 index 84c296d..0000000 --- a/cssfinder/api.py +++ /dev/null @@ -1,74 +0,0 @@ -"""EOL module.""" - -from __future__ import annotations - -import numpy as np - -from cssfinder._gilbert import Gilbert -from cssfinder.io.matrix import MatrixIO -from cssfinder.log import get_logger -from cssfinder.task import Task -from cssfinder.types import MatrixT - - -def run(task: Task) -> None: - """Run algorithm task. - - Parameters - ---------- - task : Task - Task to execute. - """ - logger = get_logger() - logger.debug("Received new task ID {}", id(task)) - logger.debug("{}", task.describe()) - - mtx = load_matrix(task) - - if is_real_only(mtx): - logger.warning( - "All values in initial state matrix are real, " - + "imaginary parts will be discarded." - ) - mtx = np.real(mtx) - - algorithm = Gilbert(task.mode, mtx, task.size, task.sub_sys_size) - algorithm.run(task.visibility, task.steps, task.correlations) - - -def load_matrix(task: Task) -> MatrixT: - """Load matrix from task. - - Parameters - ---------- - task : Task - Task to load matrix for. - - Returns - ------- - _type_ - Loaded matrix. - """ - matrix_io = MatrixIO.new(task.get_input_file()) - mtx = matrix_io.load() - get_logger().debug("Loaded matrix; shape {!r} dtype {}", mtx.shape, mtx.dtype) - return mtx - - -def is_real_only(mtx: MatrixT) -> bool: - """Check if matrix contains only real values. (Imaginary parts are all 0.) - - Parameters - ---------- - mtx : MtxT - Matrix to check. - - Returns - ------- - bool - True when no imaginary parts found. - """ - # Check if any value has imaginary part: - has_imaginary = np.imag(mtx).any() - # Return opposite; it means True when no imaginary parts found - return not has_imaginary diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 5fa89b5..901d561 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains implementation of CSSFinder command line interface.""" from __future__ import annotations @@ -9,21 +30,14 @@ import pendulum import cssfinder -from cssfinder.api import run -from cssfinder.io.v1_0_0.asset_loader import AssetLoader +from cssfinder.algorithm.gilbert import Gilbert +from cssfinder.io.asset_loader import AssetLoader from cssfinder.log import enable_logging, get_logger from cssfinder.project import ( InvalidCSSFProjectContent, MalformedProjectFileError, load_project_from, ) -from cssfinder.project.base import ( - CSSFProjectFileMissingVersion, - CSSFProjectInvalidVersion, - CSSFProjectVersionNotSupported, - ProjectFormatTooOld, -) -from cssfinder.task import Task @click.group(invoke_without_command=True, no_args_is_help=True) @@ -32,7 +46,7 @@ "--verbose", default=0, count=True, - help="Control verbosity of logging, by default critical only, use " + help="Control verbosity of logging, by default+ critical only, use " "-v, -vv, -vvv to gradually increase it.", ) @click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") @@ -65,7 +79,7 @@ def _project(path: str, force_squash: bool) -> None: try: project = load_project_from(path) logger.info( - "Loaded project {0} by {1} <{2}>.", + "Loaded project %r by %r <%r>.", project.meta.name, project.meta.author, project.meta.email, @@ -85,36 +99,23 @@ def _project(path: str, force_squash: bool) -> None: logger.critical("Fix it and try again.") raise SystemExit(302_000) from exc - except ProjectFormatTooOld as exc: - logger.critical( - "Loaded project version ({0}) is too old to use it for execution.", exc.got - ) - logger.critical("At least version {0} is required.", exc.required) - raise SystemExit(303_000) from exc - - except CSSFProjectFileMissingVersion as exc: - logger.critical("Version field is missing in your {0!r} project file.", path) - raise SystemExit(400_000) from exc - - except CSSFProjectInvalidVersion as exc: - logger.critical( - "Malformed version string {0!r} is your {1!r} project file.", - exc.version, - path, - ) - raise SystemExit(401_000) from exc - - except CSSFProjectVersionNotSupported as exc: - logger.critical( - "Selected project file format version {0} is not supported.", exc.version - ) - raise SystemExit(402_000) from exc - project.info_display() asset_loader = AssetLoader(project) state = asset_loader.load_initial_state(force_squash) - print(state) + + algorithm = Gilbert( + state, + mode=project.algorithm.mode, + backend=project.algorithm.backend, + precision=project.algorithm.precision, + visibility=project.algorithm.visibility, + ) + algorithm.run( + epochs=project.algorithm.max_epochs, + iterations=project.algorithm.iters_per_epoch, + max_corrections=project.algorithm.max_corrections, + ) raise SystemExit(0) @@ -243,15 +244,4 @@ def file( # pylint: disable=too-many-arguments logger.debug(" size = {0!r}", size) logger.debug(" sub_sys_size = {0!r}", sub_sys_size) - task = Task.new( - mode=mode, - visibility=vis, - steps=steps, - correlations=cors, - input_dir=input_dir, - output_dir=output, - size=size if size is None else int(size), - sub_sys_size=sub_sys_size if sub_sys_size is None else int(sub_sys_size), - data_type=data_type, - ) - run(task) + raise NotImplementedError(data_type) diff --git a/cssfinder/constants.py b/cssfinder/constants.py index 253f395..bdf1024 100644 --- a/cssfinder/constants.py +++ b/cssfinder/constants.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains generic global constants.""" from __future__ import annotations diff --git a/cssfinder/io/__init__.py b/cssfinder/io/__init__.py index e69de29..e24a149 100644 --- a/cssfinder/io/__init__.py +++ b/cssfinder/io/__init__.py @@ -0,0 +1,25 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Groups input output utilities for loading assets.""" + + +from __future__ import annotations diff --git a/cssfinder/io/v1_0_0/asset_loader.py b/cssfinder/io/asset_loader.py similarity index 83% rename from cssfinder/io/v1_0_0/asset_loader.py rename to cssfinder/io/asset_loader.py index e2ae5a1..8db13a4 100644 --- a/cssfinder/io/v1_0_0/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains implementation of asset loader class in version 1.0.0 which is compatible with CSSFProject in version 1.0.0.""" @@ -5,26 +26,22 @@ import math import operator +from dataclasses import dataclass from functools import reduce -from typing import ClassVar import numpy as np import numpy.typing as npt -from packaging.version import Version -from pydantic import BaseModel from cssfinder.constants import PRIMES from cssfinder.io.matrix import MatrixIO from cssfinder.log import get_logger -from cssfinder.project.v1_0_0.cssfproject import CSSFProjectV100 +from cssfinder.project.cssfproject import CSSFProject class AssetLoader: """Provides interface for loading project assets from files.""" - version: ClassVar[Version] = Version("1.0.0") - - def __init__(self, project: CSSFProjectV100) -> None: + def __init__(self, project: CSSFProject) -> None: self.project = project def load_initial_state(self, force_squash: bool = False) -> State: @@ -185,7 +202,8 @@ def load_projection(self) -> None: """Load matrix describing projection of system state.""" -class State(BaseModel): +@dataclass +class State: """State matrix and system dimensions.""" state: npt.NDArray[np.complex128] diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index eb67d00..b094023 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """Program input/output utilities.""" from __future__ import annotations @@ -7,10 +28,10 @@ from typing import Optional, Type import numpy as np +import numpy.typing as npt import scipy.io from cssfinder.log import get_logger -from cssfinder.types import MatrixT class MatrixIO(ABC): @@ -50,14 +71,14 @@ def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> Matrix return FORMAT_TO_LOADER[file_format](file_path) @abstractmethod - def load(self) -> MatrixT: + def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: """Load matrix from file as numpy array.""" class MatrixMarketIO(MatrixIO): """MatrixIO implementation for loading MatrixMarket exchange format files.""" - def load(self) -> MatrixT: + def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: mtx = scipy.io.mmread(self.file_path.as_posix()) assert mtx is not None return np.array(mtx) diff --git a/cssfinder/io/v1_0_0/__init__.py b/cssfinder/io/v1_0_0/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/cssfinder/log.py b/cssfinder/log.py index 8cfcb10..93c2c30 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """This module contains logging utilities used by CSSFinder package.""" from __future__ import annotations diff --git a/cssfinder/modes.py b/cssfinder/modes.py deleted file mode 100644 index 9ea92d8..0000000 --- a/cssfinder/modes.py +++ /dev/null @@ -1,192 +0,0 @@ -"""EOL module.""" - -from __future__ import annotations - -import math -from abc import ABC, abstractmethod -from enum import Enum -from typing import Any, Type - -import numpy as np - -from cssfinder import ops -from cssfinder.log import get_logger -from cssfinder.types import MatrixC128T - -# fmt: off -# pylint: disable=line-too-long -PRIMES = np.array([ - 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, - 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, - 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, - 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, - 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, - 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, - 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, - 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, - 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, - 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, - 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, - 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, - 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, - 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, - 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, - 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, - 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, - 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, - 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, - 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, - 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, - 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, - 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, - 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, - 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, - 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, - 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, - 1973, 1979, 1987, 1993, 1997, 1999, -], dtype=np.int64) -# pylint: enable=line-too-long -# fmt: on - - -class DataType(Enum): - """Type of data to use for output.""" - - COMPLEX = "complex" - """Return matrix of complex values.""" - - REAL = "real" - """Return matrix of real (floating point) values.""" - - INT = "int" - """Return matrix of integer values.""" - - -class Mode(Enum): - """List of possible execution modes.""" - - FSNQ = "FSNQ" - """Full separability of an n-quDit state.""" - - FSNQ_PLUS = "FSNQ+" - """Full separability of an n-quDit state (d1 optional and can be arbitrary).""" - - SBS = "SBS" - """Separability of a bipartite state.""" - - G3PE3Q = "G3PE3Q" - """Genuine 3-partite entanglement of a 3-quDit state.""" - - G4PE3Q = "G4PE3Q" - """Genuine 4-partite entanglement of a 3-quDit state.""" - - -class ModeABC(ABC): - """Abstract base class defining specialization of Gilbert algorithm.""" - - @abstractmethod - def detect_dims_none_given(self, total: int) -> tuple[int, int]: - """Detect dimensions of system from loaded data matrix. - - Parameters - ---------- - total : int - Total shape of matrix. - - Returns - ------- - tuple[int, int] - System dimensions. - """ - - @abstractmethod - def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: - """Detect dimensions of system from loaded data matrix. - - Parameters - ---------- - size : int - Already known size. - total : int - Total shape of matrix. - - Returns - ------- - tuple[int, int] - System dimensions. - """ - - @classmethod - def use(cls, mode: Mode) -> Type[ModeABC]: - """Return ModeABC implementation matching Mode flag passed. - - Parameters - ---------- - mode : Mode - Mode enum identifier. - - Returns - ------- - ModeABC - Matching mode class. - """ - return MODE_MAP[mode] - - @staticmethod - @abstractmethod - def optimize(*args: Any) -> MatrixC128T: - """Implementation of optimization for specified mode.""" - - @staticmethod - @abstractmethod - def random(*args: Any) -> MatrixC128T: - """Radom state for optimization.""" - - -class FSNQ(ModeABC): - """Specific to FSNQ mode implementation of Gilbert algorithm related hooks.""" - - def detect_dims_none_given(self, total: int) -> tuple[int, int]: - for prime in PRIMES: - sub_sys_size = int(math.log(total, prime)) - - if sub_sys_size == int(sub_sys_size): - get_logger().debug( - "Determined size: {} and number of subsystems: {}", - prime, - sub_sys_size, - ) - return prime, sub_sys_size - - raise ValueError( - "Couldn't determine size of system, prime number range exceeded." - ) - - def detect_dims_size_given(self, size: int, total: int) -> tuple[int, int]: - sub_sys_size = int(math.log(total, size)) - - if sub_sys_size == int(sub_sys_size): - get_logger().debug( - "Determined size: {} and number of subsystems: {}", - size, - sub_sys_size, - ) - return size, sub_sys_size - - raise ValueError( - f"Couldn't determine size of system: {sub_sys_size} == " - f"{int(sub_sys_size)} is False.", - ) - - @staticmethod - def optimize(*args: Any) -> MatrixC128T: - rho2, rho3, size, sub_sys_size, epochs = args - return ops.optimize_d_fs(rho2, rho3, size, sub_sys_size, epochs) - - @staticmethod - def random(*args: Any) -> MatrixC128T: - size, sub_sys_size = args - return ops.random_d_fs(size, sub_sys_size) - - -MODE_MAP: dict[Mode, Type[ModeABC]] = {Mode.FSNQ: FSNQ} diff --git a/cssfinder/ops.py b/cssfinder/ops.py deleted file mode 100644 index 720f886..0000000 --- a/cssfinder/ops.py +++ /dev/null @@ -1,145 +0,0 @@ -"""EOL module.""" -from __future__ import annotations - -from typing import cast - -import numpy as np - -from cssfinder.types import MatrixC128T - - -def product(matrix1, matrix2): - return np.trace(np.dot(matrix1, matrix2)).real - - -# @jit(nopython=True, nogil=True, cache=True) -def normalize(matrix: MatrixC128T) -> MatrixC128T: - """Normalization of a vector.""" - matrix2 = np.dot(matrix, np.conj(matrix)) - length = np.sqrt(np.real(matrix2)) - return matrix / length # type: ignore - - -# @jit(nopython=True, nogil=True, cache=True) -def get_random_haar(size: int) -> MatrixC128T: - """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, size) - imaginary = np.random.normal(0, 1, size) - return real + 1j * imaginary - - -# @jit(nopython=True, nogil=True, cache=True) -def project(mtx1: MatrixC128T) -> MatrixC128T: - """Build a projection from a vector.""" - return np.outer(mtx1, np.conj(mtx1)) - - -# @jit(nopython=True, nogil=True, cache=True) -def random_d_fs(size: int, sub_sys_size: int) -> MatrixC128T: - """Random n quDit state.""" - vector = normalize(get_random_haar(size)) - - for _ in range(sub_sys_size - 1): - idx_vector = normalize(get_random_haar(size)) - vector = np.outer(vector, idx_vector).flatten() - - vector = project(vector) - return vector # type: ignore - - -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) -def optimize_d_fs( - rho2: MatrixC128T, rho3: MatrixC128T, size: int, sub_sys_size: int, epochs: int -) -> MatrixC128T: - """Optimize implementation for FSQN mode.""" - - product_2_3 = product(rho2, rho3) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(size, sub_sys_size, 0) - rotated_2 = rotate(rho2, unitary) - - for idx in range(epochs): - - idx_mod = idx % int(sub_sys_size) - unitary = random_unitary_d_fs(size, sub_sys_size, idx_mod) - rotated_2 = rotate(rho2, unitary) - - product_rot2_3 = product(rotated_2, rho3) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) - - while (new_product_2_3 := product_rot2_3) > product_2_3: - - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - product_rot2_3 = product(rotated_2, rho3) - - return rotated_2 - - -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) -def random_unitary_d_fs(size: int, sub_sys_size: int, idx: int) -> MatrixC128T: - """N quDits.""" - value = _random_unitary_d_fs_val(size) - mtx = expand_d_fs(value, size, sub_sys_size, idx) - return mtx - - -# @jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(size: int) -> MatrixC128T: - real = np.cos(0.01 * np.pi) - imag = 1j * np.sin(0.01 * np.pi) - value = real + imag - 1 - - random_mtx = random_d_fs(size, 1) - identity_mtx = np.identity(size).astype(np.complex128) - value = np.add(np.multiply(value, random_mtx), identity_mtx) - return value - - -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) -def expand_d_fs( # pylint: disable=invalid-name - value: MatrixC128T, - size: int, - sub_sys_size: int, - idx: int, -) -> MatrixC128T: - """Expand an operator to n quDits.""" - size_1 = int(size**idx) - identity_1 = np.identity(size_1).astype(np.complex128) - - size_2 = int(size ** (sub_sys_size - idx - 1)) - identity_2 = np.identity(size_2).astype(np.complex128) - - kronecker_1 = kronecker(identity_1, value) - kronecker_2 = kronecker(kronecker_1, identity_2) - - return cast(MatrixC128T, kronecker_2) - - -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) -def kronecker(mtx: MatrixC128T, mtx1: MatrixC128T) -> MatrixC128T: - """Kronecker Product.""" - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - dot_0_1 = np.tensordot(mtx, mtx1, 0) - out_mtx = np.swapaxes(dot_0_1, 1, 2) - - return out_mtx.reshape(output_shape) - - -# @jit(nopython=True, nogil=True, cache=True) -def rotate(rho2: MatrixC128T, unitary: MatrixC128T) -> MatrixC128T: - """Sandwich an operator with a unitary.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - return rho2a # type: ignore diff --git a/cssfinder/project/__init__.py b/cssfinder/project/__init__.py index 0b159e9..7cd2caf 100644 --- a/cssfinder/project/__init__.py +++ b/cssfinder/project/__init__.py @@ -1,13 +1,38 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains utilities directly corrected with structure and operations of +cssfproject.json files.""" + + from __future__ import annotations import json from pathlib import Path from cssfinder.log import get_logger -from cssfinder.project.v1_0_0.cssfproject import CSSFProjectV100 +from cssfinder.project.cssfproject import CSSFProject -def load_project_from(file_or_directory: str | Path) -> CSSFProjectV100: +def load_project_from(file_or_directory: str | Path) -> CSSFProject: """Load CSSFinder project in at least 1.0.0 version. Parameters @@ -33,10 +58,16 @@ def load_project_from(file_or_directory: str | Path) -> CSSFProjectV100: # When points to directory, dir must contain cssfproject.json file if file_or_directory.is_dir(): file_or_directory /= "cssfproject.json" + file_path = file_or_directory + del file_or_directory + + else: + file_path = file_or_directory + del file_or_directory - logger.debug(f"Resolved project path to {file_or_directory.as_posix()!r}") + logger.debug(f"Resolved project path to {file_path.as_posix()!r}") - content = file_or_directory.read_text(encoding="utf-8") + content = file_path.read_text(encoding="utf-8") try: content = json.loads(content) except json.JSONDecodeError as exc: @@ -46,7 +77,9 @@ def load_project_from(file_or_directory: str | Path) -> CSSFProjectV100: logger.critical("Content of cssfproject.json file is not a dictionary.") raise InvalidCSSFProjectContent(content) - return CSSFProjectV100.new(content, file_or_directory) + project = CSSFProject(**content) + project.set_file_path(file_path) + return project class InvalidCSSFProjectContent(ValueError): diff --git a/cssfinder/project/base.py b/cssfinder/project/base.py deleted file mode 100644 index d60b502..0000000 --- a/cssfinder/project/base.py +++ /dev/null @@ -1,169 +0,0 @@ -"""This file contains metaclass and base class used to create concrete implementations -of cssfproject.json file format containers.""" - -from __future__ import annotations - -from pathlib import Path -from typing import Any, ClassVar, Optional, Type, TypeVar, cast - -from packaging.version import InvalidVersion, Version -from pydantic import BaseModel, Extra, validator -from pydantic.main import ModelMetaclass - -from cssfinder.log import get_logger - -CSSFPROJECT_CLS_INDEX: dict[Version, Type[CSSFProjectBase]] = {} - - -Self = TypeVar("Self", bound="CSSFProjectMeta") - - -class CSSFProjectMeta(ModelMetaclass): - """Metaclass used by all CSSFProject implementations.""" - - def __new__( - cls: type[Self], - name: str, - bases: tuple[type, ...], - namespace: dict[str, Any], - **kwargs: Any, - ) -> Self: - cssfproject = super().__new__(cls, name, bases, namespace, **kwargs) - CSSFPROJECT_CLS_INDEX[cssfproject.version] = cssfproject - - return cast(Self, cssfproject) - - -CSSFProjectBaseT = TypeVar("CSSFProjectBaseT", bound="CSSFProjectBase") - - -class CSSFProjectBase(BaseModel, metaclass=CSSFProjectMeta): - """Base class used by all CSSFProject implementations.""" - - version: ClassVar[Version] = Version("0.0.0") - """Project file format version.""" - - file: Optional[Path] - """Path to loaded project file.""" - - @property - def directory(self) -> Optional[Path]: - """Path to directory containing cssfproject.json file.""" - if self.file is None: - return None - return self.file - - class Config: - validate_assignment = True - extra = Extra.ignore - - @validator("file") - @classmethod - def _path_resolve(cls, value: Path) -> Path: - if isinstance(value, Path): - value = value.expanduser().resolve() - - return value - - @classmethod - def new( - cls: Type[CSSFProjectBaseT], - data: dict[str, Any], - project_path: Optional[Path] = None, - ) -> CSSFProjectBaseT: - """Create new instance of CSSFProject of selected version. - - Parameters - ---------- - data : dict[str, Any] - data to feed into project class. - - Returns - ------- - CSSFProjectBase - instance of project. - - Raises - ------ - CSSFProjectFileMissingVersion - When version of project is not specified. - CSSFProjectInvalidVersion - When version string is malformed. - CSSFProjectVersionNotSupported - When version is not supported. - """ - try: - version_str = data.pop("version") - except KeyError as exc: - raise CSSFProjectFileMissingVersion() from exc - - try: - version = Version(version_str) - except InvalidVersion as exc: - raise CSSFProjectInvalidVersion(version_str) from exc - - if version not in CSSFPROJECT_CLS_INDEX: - raise CSSFProjectVersionNotSupported(version) - - project_cls = CSSFPROJECT_CLS_INDEX[version] - project = project_cls(**data, project_path=project_path) - - logger = get_logger() - logger.debug( - "Instantiated project class {0}.{1} from {2!r}", - project_cls.__module__, - project_cls.__qualname__, - project_path.as_posix() if project_path else project_path, - ) - - if project.version < cls.version: - raise ProjectFormatTooOld(project.version, cls.version) - - return cast(CSSFProjectBaseT, project) - - def expand_path(self, path: str) -> str: - """Expand all special variables in path string. - - Parameters - ---------- - path : str - Path string to expand. - project : CSSFProjectBase - Project to expand path for, it will be used as source of some special - variables. - - Returns - ------- - str - Expanded path. - """ - return path.format(project=self) - - -class CSSFProjectFileMissingVersion(ValueError): - """Raised when "version" field is missing in cssfproject.json file.""" - - -class CSSFProjectInvalidVersion(InvalidVersion): - """Raised when "version" field contains invalid version string.""" - - def __init__(self, version: str) -> None: - super().__init__() - self.version = version - - -class CSSFProjectVersionNotSupported(InvalidVersion): - """Raised when version requested is not supported.""" - - def __init__(self, version: Version) -> None: - super().__init__() - self.version = version - - -class ProjectFormatTooOld(ValueError): - """Raised when project format is too old to perform requested task.""" - - def __init__(self, got: Version, required: Version) -> None: - super().__init__() - self.got = got - self.required = required diff --git a/cssfinder/project/v1_0_0/cssfproject.py b/cssfinder/project/cssfproject.py similarity index 64% rename from cssfinder/project/v1_0_0/cssfproject.py rename to cssfinder/project/cssfproject.py index 18102ca..7368e25 100644 --- a/cssfinder/project/v1_0_0/cssfproject.py +++ b/cssfinder/project/cssfproject.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """CSSFinder uses its own project format allowing for file based customization of parameters used by gilbert algorithm. @@ -8,20 +29,16 @@ from __future__ import annotations from enum import Enum -from typing import ClassVar, Optional, Type, TypeVar +from pathlib import Path +from typing import Optional, Type, TypeVar -from packaging.version import Version -from pydantic import BaseModel, ConstrainedStr, EmailStr, Field +from pydantic import BaseModel, ConstrainedStr, EmailStr, Extra, Field from cssfinder.log import get_logger -from cssfinder.project.base import CSSFProjectBase -class CSSFProjectV100(CSSFProjectBase): - """CSSFProject file specification version 1.0.0.""" - - version: ClassVar[Version] = Version("1.0.0") - """Project file format version.""" +class CSSFProject(BaseModel): + """CSSFProject file specification.""" meta: Meta """Project meta information like name and author.""" @@ -31,6 +48,50 @@ class CSSFProjectV100(CSSFProjectBase): algorithm: Algorithm + _file: Optional[Path] = None + """Path to loaded project file.""" + + class Config: + validate_assignment = True + extra = Extra.ignore + underscore_attrs_are_private = True + + def set_file_path(self, file: Path) -> None: + """Set `cssfproject.json` file path.""" + self._file = file.expanduser().resolve() + + @property + def file(self) -> Path: + """Path to `cssfproject.json` file.""" + if self._file is None: + return Path.cwd() / "cssfproject.json" + return self._file + + @property + def directory(self) -> Path: + """Path to directory containing `cssfproject.json` file.""" + if self._file is None: + return Path.cwd() + return self._file.parent + + def expand_path(self, path: str) -> str: + """Expand all special variables in path string. + + Parameters + ---------- + path : str + Path string to expand. + project : CSSFProjectBase + Project to expand path for, it will be used as source of some special + variables. + + Returns + ------- + str + Expanded path. + """ + return path.format(project=self) + def info_display(self) -> None: """Display configuration content.""" logger = get_logger() @@ -212,6 +273,7 @@ class Precision(_CIEnum): # pylint: enable=invalid-name +Algorithm.update_forward_refs() # type: ignore Resources.update_forward_refs() # type: ignore Meta.update_forward_refs() # type: ignore -CSSFProjectV100.update_forward_refs() # type: ignore +CSSFProject.update_forward_refs() # type: ignore diff --git a/cssfinder/project/v1_0_0/__init__.py b/cssfinder/project/v1_0_0/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/cssfinder/report.py b/cssfinder/report.py deleted file mode 100644 index 3c834c0..0000000 --- a/cssfinder/report.py +++ /dev/null @@ -1,86 +0,0 @@ -from __future__ import annotations - -import math -import sys - - -def invert(c, a): - return 1 / (c - a) - - -def listshift(l1, a1): - return list(map(lambda x: x - a1, l1)) - - -def cov(l1, l2): - return mean( - list( - map( - lambda x1, x2: x1 * x2, listshift(l1, mean(l1)), listshift(l2, mean(l2)) - ) - ) - ) - - -def trend(l1, l2): - l1a = list(map(math.log, l1)) - l2a = list(map(math.log, l2)) - return cov(l1a, l2a) / cov(l1a, l1a) - - -def offset(l1, l2): - l1a = list(map(math.log, l1)) - l2a = list(map(math.log, l2)) - return mean(l2a) - mean(l1a) * trend(l1, l2) - - -def findmaximum(ll): - list1 = list(map(lambda i: i.value, ll)) - list2 = list1[len(list1) // 2 :] - - aaa1 = list2[-1] - 0.000001 - step1 = aaa1 / 10000 - - while R(list2, aaa1 - step1) > R(list2, aaa1) and aaa1 > 0: - aaa1 = aaa1 - step1 - - return aaa1 - - -def R(l: list, a: float) -> float: - ll1 = list(map(lambda x1: invert(x1, a), l)) - return ( - mean(list(map(lambda x1, x2: x1 * x2, ll1, list(range(len(l)))))) - - mean(ll1) * mean(list(range(len(l)))) - ) / math.sqrt( - (mean(list(map(lambda x: x**2, ll1))) - mean(ll1) ** 2) - * ( - mean(list(map(lambda x: x**2, list(range(len(l)))))) - - mean(list(range(len(l)))) ** 2 - ) - ) - - -def mean(l): - return sum(l) / len(l) - - -def makeshortreport(ll): - ll10 = list(map(lambda i: i.iteration_number, ll)) - ll11 = list(map(lambda i: i.correction_number, ll)) - kk = findmaximum(ll) - ll12 = [] - for j1 in range(int(2 * len(ll) / 3), len(ll)): - ll12.append(ll[j1][2]) - - sys.stdout.write("Basing on decay, the squared HS distance is estimsated to be ") - sys.stdout.write(str(kk)) - sys.stdout.write(" (R=") - sys.stdout.write(str(R(ll12, kk))) - sys.stdout.write(")\n") - sys.stdout.write("The dependence between corrs and trail is approximately:\n") - sys.stdout.write("corr=trail^") - sys.stdout.write(str(trend(ll10, ll11))) - sys.stdout.write("*") - sys.stdout.write(str(math.exp(offset(ll10, ll11)))) - sys.stdout.write("\n-----------------\n") diff --git a/cssfinder/task.py b/cssfinder/task.py deleted file mode 100644 index b62ff0a..0000000 --- a/cssfinder/task.py +++ /dev/null @@ -1,92 +0,0 @@ -from __future__ import annotations - -from dataclasses import dataclass -from pathlib import Path -from typing import Optional, Type, TypeVar - -from cssfinder.modes import DataType, Mode - -DEFAULT_TASK_OUT_DIR = Path.cwd() / "out" - - -_TaskT = TypeVar("_TaskT", bound="Task") - - -@dataclass -class Task: - """Task specification for algorithm.""" - - mode: Mode - visibility: float - steps: int - correlations: int - - input_dir: Path - output_dir: Path - - size: Optional[int] - sub_sys_size: Optional[int] - data_type: DataType - - @classmethod - def new( # pylint: disable=too-many-arguments - cls: Type[_TaskT], - mode: str | Mode, - visibility: int | float | str, - steps: int | float | str, - correlations: int | float | str, - input_dir: str | Path, - output_dir: str | Path | None, - size: int | None, - sub_sys_size: int | None, - data_type: str | DataType, - ) -> _TaskT: - """Create new Task instance with automatic field data validation. - - Parameters - ---------- - mode : str | Mode - Algorithm mode. - visibility : int | float | str - visibility against white noise. - steps : int | float | str - Number of attempts to correct the closest separable state. - correlations : int | float | str - Maximal number of corrections to the closest separable state. - input_dir : str | Path - Path to the directory containing input files. - output_dir : str | Path | None - Path to directory to put output files in. - - Returns - ------- - _TaskT - Task instance. - """ - instance = cls( - Mode(mode), - min(1.0, max(0.0, float(visibility))), - (int(steps) // 10) * 10, - (int(correlations) // 50) * 50, - Path(input_dir), - Path(output_dir) if output_dir is not None else DEFAULT_TASK_OUT_DIR, - size, - sub_sys_size, - DataType(data_type), # type: ignore - ) - return instance - - def describe(self) -> str: - """Short task content description as string.""" - return ( - f"<{self.mode.value}/{self.visibility}/{self.steps}/" - f"{self.correlations}/{self.input_dir}>" - ) - - def get_prefix(self) -> str: - """File and directory prefix.""" - return self.input_dir.name - - def get_input_file(self) -> Path: - """Path to file containing input state.""" - return self.input_dir / f"{self.get_prefix()}_in.mtx" diff --git a/cssfinder/types.py b/cssfinder/types.py deleted file mode 100644 index e22a93c..0000000 --- a/cssfinder/types.py +++ /dev/null @@ -1,16 +0,0 @@ -"""This module contains helper types for CSSFinder package (EOL module).""" -from __future__ import annotations - -from typing import TYPE_CHECKING - -import numpy as np -import numpy.typing as npt - -if TYPE_CHECKING: - from typing_extensions import TypeAlias - -DTypeT: TypeAlias = "np.int64 | np.float64 | np.complex128" - -MatrixT: TypeAlias = npt.NDArray[DTypeT] - -MatrixC128T: TypeAlias = 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376c8ee..30753a7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,8 +1,12 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.1.0" +version = "1.0.0" description = "" -authors = [] +authors = [ + "Krzysztof Wiśniewski ", + "Marcin Wieśniak ", +] +repository = "https://github.com/wiesnim9/CSSFinder" readme = "README.md" [tool.poetry.dependencies] # ANCHOR: tool.poetry.dependencies @@ -12,28 +16,35 @@ numpy = "^1.23.0" numba = "^0.56.4" pendulum = "^2.1.2" scipy = "^1.9.3" -pydantic = "^1.10.4" +pydantic = "^1.10.5" packaging = "^23.0" email-validator = "^1.3.1" +typing-extensions = "^4.5.0" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" pylint = "^2.15.9" isort = "^5.11.4" -docformatter = {extras = ["tomli"], version = "^1.5.1"} +docformatter = { extras = ["tomli"], version = "^1.5.1" } pytest = "^7.2.0" autoflake = "^2.0.0" pre-commit = "^2.20.0" pytest-cov = "^4.0.0" -mypy = "^0.991" +mypy = "^1.0.1" ptpython = "^3.0.22" typing-extensions = "^4.4.0" snakeviz = "^2.1.1" +poethepoet = "^0.18.1" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" cssf = "cssfinder.cli:main" +[tool.poe.tasks] +install-hooks = "pre-commit install --install-hooks --overwrite" +run-hooks = "pre-commit run --all-files -v" +build = "poetry build --format=wheel" + [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" @@ -58,7 +69,7 @@ line_length = 88 [tool.black] # ANCHOR: tool.black # https://black.readthedocs.io/en/stable/usage_and_configuration/the_basics.html#configuration-format line-length = 88 -target-version = ['py38'] +target-version = ['py39'] extend-exclude = "(external)" [tool.docformatter] @@ -73,7 +84,7 @@ blank = true # https://mypy.readthedocs.io/en/stable/command_line.html # # https://mypy.readthedocs.io/en/stable/cheat_sheet_py3.html # # ---------------------------------------------------------------------------- # -python_version = "3.8" +python_version = "3.9" # A regular expression that matches file names, directory names and paths which # mypy should ignore while recursively discovering files to check. Use forward #slashes (/) as directory separators on all platforms. @@ -254,7 +265,7 @@ limit-inference-results = 100 persistent = true # Minimum Python version to use for version dependent checks. Will default to the # version used to run pylint. -py-version = "3.8" +py-version = "3.9" # Discover python modules and packages in the file system subtree. # recursive = # When enabled, pylint would attempt to guess common misconfiguration and emit @@ -475,16 +486,7 @@ confidence = [ # --enable=similarities". If you want to run only the classes checker, but have # no Warning level messages displayed, use "--disable=all --enable=classes # --disable=W". -disable = [ - "raw-checker-failed", - "bad-inline-option", - "locally-disabled", - "file-ignored", - "suppressed-message", - "useless-suppression", - "deprecated-pragma", - "use-symbolic-message-instead", -] +disable = ["logging-too-many-args", "unnecessary-ellipsis"] # Enable the message, report, category or checker with the given id(s). You can # either give multiple identifier separated by comma (,) or put this option # multiple time (only on the command line, not in the configuration file where it diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index e727269..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,4 +0,0 @@ -black>=22.0,<23.0 -isort>=5.0,<6.0 -docformatter>=1.4,<2.0 -pylint>=2.15.0,<2.16.0 \ No newline at end of file diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 1287839..0000000 --- a/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -numpy>=1.24.0,<1.25.0 \ No newline at end of file diff --git a/scripts/templates/MIT.md.jinja2 b/scripts/templates/MIT.md.jinja2 new file mode 100644 index 0000000..238b9ab --- /dev/null +++ b/scripts/templates/MIT.md.jinja2 @@ -0,0 +1,19 @@ +Copyright {{ now.year }} {{ pyproject.tool.poetry.authors[0] }} + + +Permission is hereby granted, free of charge, to any person obtaining a copy of this +software and associated documentation files (the “Software”), to deal in the Software +without restriction, including without limitation the rights to use, copy, modify, +merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to the following +conditions: + +The above copyright notice and this permission notice shall be included in all copies +or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. From 07db1b00c730763bf792d39229b61a825a316267 Mon Sep 17 00:00:00 2001 From: Argmaster Date: Wed, 22 Feb 2023 00:49:40 +0100 Subject: [PATCH 037/227] Fix bug in code causing script to yield incorrect results --- .../backend/numpy/_impl/_complex128.py | 53 ++-- .../backend/numpy/_impl/_type.py.jinja2 | 0 cssfinder/algorithm/backend/numpy/base.py | 30 ++- cssfinder/algorithm/backend/numpy/impl.py | 14 +- cssfinder/algorithm/gilbert.py | 56 +++- cssfinder/cli.py | 45 ++-- cssfinder/io/asset_loader.py | 77 ++++-- cssfinder/io/matrix.py | 20 +- cssfinder/log.py | 193 ++++++++----- cssfinder/project/__init__.py | 7 +- cssfinder/project/cssfproject.py | 13 +- cssfinder/report.py | 22 ++ poetry.lock | 255 +++++++++++------- pyproject.toml | 4 +- 14 files changed, 508 insertions(+), 281 deletions(-) create mode 100644 cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 create mode 100644 cssfinder/report.py diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 0b11c23..1145fb3 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -29,11 +29,6 @@ import numpy.typing as npt from numba import jit -# def create_rho_1(prefix, rho, mode, d1, vis): -# rhoa = np.zeros(rho.shape, dtype=np.complex128) -# np.fill_diagonal(rhoa, rho.diagonal()) -# return rhoa - @jit(nopython=True, nogil=True, cache=True) def product( @@ -52,10 +47,10 @@ def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: @jit(nopython=True, nogil=True, cache=True) -def get_random_haar(size: int) -> npt.NDArray[np.complex128]: +def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, size) - imaginary = np.random.normal(0, 1, size) + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) return real + 1j * imaginary @@ -66,12 +61,12 @@ def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: @jit(nopython=True, nogil=True, cache=True) -def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Random n quDit state.""" - vector = normalize(get_random_haar(size)) + vector = normalize(get_random_haar(depth)) - for _ in range(sub_sys_size - 1): - idx_vector = normalize(get_random_haar(size)) + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) vector = np.outer(vector, idx_vector).flatten() vector = project(vector) @@ -83,8 +78,8 @@ def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: def optimize_d_fs( rho2: npt.NDArray[np.complex128], rho3: npt.NDArray[np.complex128], - size: int, - sub_sys_size: int, + depth: int, + quantity: int, epochs: int, ) -> npt.NDArray[np.complex128]: """Optimize implementation for FSnQd mode.""" @@ -92,12 +87,12 @@ def optimize_d_fs( product_2_3 = product(rho2, rho3) # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(size, sub_sys_size, 0) + unitary = random_unitary_d_fs(depth, quantity, 0) rotated_2 = rotate(rho2, unitary) for idx in range(epochs): - idx_mod = idx % int(sub_sys_size) - unitary = random_unitary_d_fs(size, sub_sys_size, idx_mod) + idx_mod = idx % int(quantity) + unitary = random_unitary_d_fs(depth, quantity, idx_mod) rotated_2 = rotate(rho2, unitary) product_rot2_3 = product(rotated_2, rho3) @@ -117,22 +112,22 @@ def optimize_d_fs( # @jit(nopython=True, nogil=True, cache=True) # @jit(forceobj=True) def random_unitary_d_fs( - size: int, sub_sys_size: int, idx: int + depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex128]: """N quDits.""" - value = _random_unitary_d_fs_val(size) - mtx = expand_d_fs(value, size, sub_sys_size, idx) + value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) return mtx @jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(size: int) -> npt.NDArray[np.complex128]: +def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: real = np.cos(0.01 * np.pi) imag = 1j * np.sin(0.01 * np.pi) value = real + imag - 1 - random_mtx = random_d_fs(size, 1) - identity_mtx = np.identity(size).astype(np.complex128) + random_mtx = random_d_fs(depth, 1) + identity_mtx = np.identity(depth).astype(np.complex128) value = np.add(np.multiply(value, random_mtx), identity_mtx) return value @@ -141,16 +136,16 @@ def _random_unitary_d_fs_val(size: int) -> npt.NDArray[np.complex128]: # @jit(forceobj=True) def expand_d_fs( value: npt.NDArray[np.complex128], - size: int, - sub_sys_size: int, + depth: int, + quantity: int, idx: int, ) -> npt.NDArray[np.complex128]: """Expand an operator to n quDits.""" - size_1 = int(size**idx) - identity_1 = np.identity(size_1).astype(np.complex128) + depth_1 = int(depth**idx) + identity_1 = np.identity(depth_1).astype(np.complex128) - size_2 = int(size ** (sub_sys_size - idx - 1)) - identity_2 = np.identity(size_2).astype(np.complex128) + depth_2 = int(depth ** (quantity - idx - 1)) + identity_2 = np.identity(depth_2).astype(np.complex128) kronecker_1 = kronecker(identity_1, value) kronecker_2 = kronecker(kronecker_1, identity_2) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 b/cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 new file mode 100644 index 0000000..e69de29 diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index fd56e0c..8435fef 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -43,8 +43,9 @@ class NumPyBase(BackendBase): def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: super().__init__(initial, mode, visibility) - self._visibility = self._create_visibility_matrix(initial) - self._intermediate = self.initial.state.copy() + + self._visibility = self._create_visibility_matrix() + self._intermediate = self._create_intermediate_state() self._corrections = [] self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) @@ -52,20 +53,27 @@ def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: self._visibility_reduced = self._visibility - self._intermediate self._dd1 = self.impl.product(self._intermediate, self._visibility_reduced) - def _create_visibility_matrix(self, initial: State) -> npt.NDArray[np.complex128]: - return self.visibility * initial.state + (1 - self.visibility) * np.identity( - len(initial.state), dtype=np.complex128 + def _create_visibility_matrix(self) -> npt.NDArray[np.complex128]: + vis_state = self.visibility * self.initial.state + inv_vis_ident = (1 - self.visibility) * np.identity( + len(self.initial.state), dtype=np.complex128 ) + return vis_state + inv_vis_ident / len(self.initial.state) + + def _create_intermediate_state(self) -> npt.NDArray[np.complex128]: + intermediate = np.zeros_like(self._visibility, dtype=np.complex128) + np.fill_diagonal(intermediate, self._visibility.diagonal()) + return intermediate @property def state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" - return self._intermediate + return self._intermediate.copy() @property def corrections(self) -> list[tuple[int, int, float]]: """Return list of all corrections found during optimization.""" - return self._corrections + return self._corrections.copy() @property def corrections_count(self) -> int: @@ -76,8 +84,6 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" depth = self.initial.depth - quantity = self.initial.quantity - quantity = self.initial.quantity epochs = 20 * depth * depth * quantity @@ -111,11 +117,11 @@ def _update_state( aa2 = 2 * self.impl.product(self._visibility, alternative_state) aa5 = 2 * self.impl.product(self._intermediate, alternative_state) - coef = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) + param = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) - if 0 <= coef <= 1: + if 0 <= param <= 1: self._intermediate = ( - coef * self._intermediate + (1 - coef) * alternative_state + param * self._intermediate + (1 - param) * alternative_state ) self._visibility_reduced = self._visibility - self._intermediate diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index a0fda0f..6415c5a 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -45,7 +45,7 @@ def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: ... @staticmethod - def get_random_haar(size: int) -> npt.NDArray[np.complex128]: + def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: """Generate a random vector with Haar measure.""" ... @@ -55,7 +55,7 @@ def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: ... @staticmethod - def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: + def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Random n quDit state.""" ... @@ -63,8 +63,8 @@ def random_d_fs(size: int, sub_sys_size: int) -> npt.NDArray[np.complex128]: def optimize_d_fs( rho2: npt.NDArray[np.complex128], rho3: npt.NDArray[np.complex128], - size: int, - sub_sys_size: int, + depth: int, + quantity: int, epochs: int, ) -> npt.NDArray[np.complex128]: """Optimize implementation for FSnQd mode.""" @@ -72,7 +72,7 @@ def optimize_d_fs( @staticmethod def random_unitary_d_fs( - size: int, sub_sys_size: int, idx: int + depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex128]: """N quDits.""" ... @@ -80,8 +80,8 @@ def random_unitary_d_fs( @staticmethod def expand_d_fs( # pylint: disable=invalid-name value: npt.NDArray[np.complex128], - size: int, - sub_sys_size: int, + depth: int, + quantity: int, idx: int, ) -> npt.NDArray[np.complex128]: """Expand an operator to n quDits.""" diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 0a0e667..d5ca4b6 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -23,9 +23,14 @@ from __future__ import annotations +import logging +from typing import Optional + +import numpy as np +import numpy.typing as npt + from cssfinder.algorithm import backend as _backend from cssfinder.io.asset_loader import State -from cssfinder.log import get_logger from cssfinder.project.cssfproject import AlgoMode, Backend, Precision @@ -40,39 +45,70 @@ def __init__( precision: Precision, visibility: float, ) -> None: - self.logger = get_logger() self.initial = initial self.mode = mode self.precision = precision self.visibility = visibility + backend_type = _backend.new(backend, self.precision) self.backend = backend_type(self.initial, self.mode, self.visibility) + self._state: Optional[npt.NDArray[np.complex128]] = None + self._corrections: Optional[list[tuple[int, int, float]]] = None + def run(self, epochs: int, iterations: int, max_corrections: int) -> None: """Run epochs of iterations each, or up to max_corrections found.""" total_iterations = epochs * iterations for epoch_index in range(epochs): - self.logger.info( - "Executing epoch {0} / {1} ({2:.2%})", + logging.info( + "Executing epoch %r / %r (%.2f)", epoch_index + 1, epochs, - (epoch_index + 1) / epochs, + ((epoch_index + 1) / epochs) * 100, ) # Run N iterations of algorithm without checking stop conditions. self.backend.run_epoch(iterations, epoch_index) iterations_executed = (epoch_index + 1) * iterations - self.logger.debug( - "Executed {0} iterations, total {1} / {2} ({3:.2%})", + logging.debug( + "Executed %r iterations, total %r / %r (%.2f)", iterations, iterations_executed, total_iterations, - iterations_executed / total_iterations, + (iterations_executed / total_iterations) * 100, ) # Check if we already reached expected number of corrections if self.backend.corrections_count >= max_corrections: - self.logger.info( - "Reached expected maximal number of corrections {}", max_corrections + logging.info( + "Reached expected maximal number of corrections %r", max_corrections ) break + + self._state = self.backend.state + self._corrections = self.backend.corrections + + @property + def state(self) -> npt.NDArray[np.complex128]: + """Returns correction from saturated algorithm.""" + if self._state is None: + raise AlgorithmNotSaturatedError("Run algorithm first to obtain state!") + return self._state + + @property + def corrections(self) -> list[tuple[int, int, float]]: + """Returns correction from saturated algorithm.""" + if self._corrections is None: + raise AlgorithmNotSaturatedError( + "Run algorithm first to obtain corrections!" + ) + return self._corrections + + +class AlgorithmError(Exception): + """Base for exceptions raised by gilbert algorithm.""" + + +class AlgorithmNotSaturatedError(Exception): + """Raised when action was performed on which required algorithm to finish execution + on instance which was not run.""" diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 901d561..eb01592 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -23,8 +23,9 @@ from __future__ import annotations +import logging from pathlib import Path -from typing import Optional +from typing import Optional, cast import click import pendulum @@ -32,7 +33,7 @@ import cssfinder from cssfinder.algorithm.gilbert import Gilbert from cssfinder.io.asset_loader import AssetLoader -from cssfinder.log import enable_logging, get_logger +from cssfinder.log import configure_logger from cssfinder.project import ( InvalidCSSFProjectContent, MalformedProjectFileError, @@ -52,9 +53,8 @@ @click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") def main(verbose: int) -> None: """CSSFinder is a script for finding closest separable states.""" - enable_logging(verbose) - logger = get_logger() - logger.info("CSSFinder started at {}", pendulum.now()) + configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) + logging.info("CSSFinder started at %r", pendulum.now()) if verbose >= 2: print( @@ -74,29 +74,28 @@ def main(verbose: int) -> None: @click.option("--force-squash", is_flag=True, default=False) def _project(path: str, force_squash: bool) -> None: """Use project file to determine runtime configuration.""" - logger = get_logger() try: project = load_project_from(path) - logger.info( + logging.info( "Loaded project %r by %r <%r>.", project.meta.name, project.meta.author, project.meta.email, ) except FileNotFoundError as exc: - logger.critical("Project file not found.") + logging.critical("Project file not found.") raise SystemExit(300_000) from exc except MalformedProjectFileError as exc: - logger.critical( + logging.critical( "Project file content is not a valid JSON file. Fix it and try again." ) raise SystemExit(301_000) from exc except InvalidCSSFProjectContent as exc: - logger.critical("Project file doesn't contain valid project configuration.") - logger.critical("Fix it and try again.") + logging.critical("Project file doesn't contain valid project configuration.") + logging.critical("Fix it and try again.") raise SystemExit(302_000) from exc project.info_display() @@ -117,6 +116,9 @@ def _project(path: str, force_squash: bool) -> None: max_corrections=project.algorithm.max_corrections, ) + asset_loader.save_output_state(algorithm.state) + asset_loader.save_output_corrections(algorithm.corrections) + raise SystemExit(0) @@ -230,18 +232,17 @@ def file( # pylint: disable=too-many-arguments - prefix_abort.txt: The error message if the algorithm was extremely slow (for some highly entangled states). """ - logger = get_logger() # String formatting reference: https://peps.python.org/pep-3101/ - logger.debug("INPUT PARAMETERS") - logger.debug("================") - logger.debug(" vis = {0!r}", vis) - logger.debug(" steps = {0!r}", steps) - logger.debug(" cors = {0!r}", cors) - logger.debug(" mode = {0!r}", mode) - logger.debug(" input = {0!r}", input_dir) - logger.debug(" output = {0!r}", output) - logger.debug(" size = {0!r}", size) - logger.debug(" sub_sys_size = {0!r}", sub_sys_size) + logging.debug("INPUT PARAMETERS") + logging.debug("================") + logging.debug(" vis = {0!r}", vis) + logging.debug(" steps = {0!r}", steps) + logging.debug(" cors = {0!r}", cors) + logging.debug(" mode = {0!r}", mode) + logging.debug(" input = {0!r}", input_dir) + logging.debug(" output = {0!r}", output) + logging.debug(" size = {0!r}", size) + logging.debug(" sub_sys_size = {0!r}", sub_sys_size) raise NotImplementedError(data_type) diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index 8db13a4..4eab6e8 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -24,6 +24,8 @@ from __future__ import annotations +import json +import logging import math import operator from dataclasses import dataclass @@ -34,7 +36,6 @@ from cssfinder.constants import PRIMES from cssfinder.io.matrix import MatrixIO -from cssfinder.log import get_logger from cssfinder.project.cssfproject import CSSFProject @@ -46,7 +47,6 @@ def __init__(self, project: CSSFProject) -> None: def load_initial_state(self, force_squash: bool = False) -> State: """Load initial state from file indicated by cssfproject configuration.""" - logger = get_logger() state_props = self.project.resources.initial_state # Replace magic variables with dynamically determined values @@ -54,8 +54,8 @@ def load_initial_state(self, force_squash: bool = False) -> State: loader = MatrixIO.new(state_matrix_file_path) mtx = loader.load().astype(np.complex128) - logger.info( - "Loaded matrix from {0!r} of shape {1}", state_matrix_file_path, mtx.shape + logging.info( + "Loaded matrix from %r of shape %r", state_matrix_file_path, mtx.shape ) # Forcefully reshape array to match shape criterion @@ -79,10 +79,10 @@ def load_initial_state(self, force_squash: bool = False) -> State: depth, quantity = self.detect_depth_and_quantity(total_size) if old_quantity is not None: - logger.warning( + logging.warning( ( - "State quantity ({0}) was ignored, as depth is None, " - + "quantity of {1} was deduced." + "State quantity (%r) was ignored, as depth is None, " + + "quantity of %r was deduced." ), old_quantity, quantity, @@ -91,32 +91,31 @@ def load_initial_state(self, force_squash: bool = False) -> State: elif quantity is None: quantity = self.detect_system_quantity(depth, total_size) - logger.info( - "Matrix represents system with depth = {0}, quantity = {1}", depth, quantity + logging.info( + "Matrix represents system with depth = %r, quantity = %r", depth, quantity ) return State(state=mtx, depth=depth, quantity=quantity) def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: """Check if ndarray conforms shape rules.""" - logger = get_logger() if len(mtx.shape) == 2: pass elif len(mtx.shape) > 2: - logger.critical( - "Expected square matrix but got tensor with shape {0}", mtx.shape + logging.critical( + "Expected square matrix but got tensor with shape %r", mtx.shape ) raise NotExpectedTensor(mtx) elif len(mtx.shape) == 1: - logger.critical( - "Expected square matrix but got vector with shape {0}", mtx.shape + logging.critical( + "Expected square matrix but got vector with shape %r", mtx.shape ) raise NotExpectedVector(mtx) elif len(mtx.shape) == 0: - logger.critical("Expected square matrix but got scalar ({0})", mtx) + logging.critical("Expected square matrix but got scalar (%r)", mtx) raise NotExpectedScalar(mtx) else: @@ -125,7 +124,7 @@ def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: # Only square matrices are accepted. x_size, y_size = mtx.shape if x_size != y_size: - logger.critical("Expected square matrix, but received shape {0}", mtx.shape) + logging.critical("Expected square matrix, but received shape %r", mtx.shape) raise IncorrectMatrixShape(mtx) def detect_depth_and_quantity(self, total: int) -> tuple[int, int]: @@ -150,8 +149,8 @@ def detect_depth_and_quantity(self, total: int) -> tuple[int, int]: quantity = int(math.log(total, depth)) if quantity == int(quantity): - get_logger().debug( - "Deduced quantity {0} and depth {1} when given total size {2}", + logging.debug( + "Deduced quantity %r and depth %r when given total size %r", depth, quantity, total, @@ -185,9 +184,7 @@ def detect_system_quantity(self, depth: int, total: int) -> int: quantity = int(math.log(total, depth)) if quantity == int(quantity): - get_logger().debug( - "Deduced quantity {0} when given depth of {1}", depth, quantity - ) + logging.debug("Deduced quantity %r when given depth of %r", depth, quantity) return quantity raise ValueError( @@ -201,6 +198,44 @@ def load_symmetries(self) -> None: def load_projection(self) -> None: """Load matrix describing projection of system state.""" + def save_output_state(self, state: npt.NDArray[np.complex128]) -> None: + """Save state in project output state file `state.mtx` in `output` directory of + your project. + + Parameters + ---------- + state : npt.NDArray[np.complex128] + State matrix to save. + """ + dest = self.project.output / "state.mtx" + logging.debug( + "Saving output state to %r with matrix size %r", + dest.as_posix(), + state.shape, + ) + mtx_io = MatrixIO.new(dest) + mtx_io.dump(state) + + def save_output_corrections( + self, corrections: list[tuple[int, int, float]] + ) -> None: + """Save corrections in project output state file `corrections.json` in `output` + directory of your project. + + Parameters + ---------- + corrections : npt.NDArray[np.complex128] + State matrix to save. + """ + dest = self.project.output / "corrections.json" + logging.debug( + "Saving output state to %r with total corrections %r", + dest.as_posix(), + len(corrections), + ) + with dest.open("w", encoding="utf-8") as file: + json.dump(corrections, file, indent=2) + @dataclass class State: diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index b094023..1597a2f 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -23,6 +23,7 @@ from __future__ import annotations +import logging from abc import ABC, abstractmethod from pathlib import Path from typing import Optional, Type @@ -31,7 +32,7 @@ import numpy.typing as npt import scipy.io -from cssfinder.log import get_logger +import cssfinder class MatrixIO(ABC): @@ -63,9 +64,8 @@ def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> Matrix if file_format is None: file_format = file_path.suffix - logger = get_logger() - logger.debug( - "Using file format {!r} for file {}", file_format, file_path.as_posix() + logging.debug( + "Using file format %r for file %r", file_format, file_path.as_posix() ) return FORMAT_TO_LOADER[file_format](file_path) @@ -74,6 +74,10 @@ def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> Matrix def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: """Load matrix from file as numpy array.""" + @abstractmethod + def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None: + """Dump matrix to file from numpy array.""" + class MatrixMarketIO(MatrixIO): """MatrixIO implementation for loading MatrixMarket exchange format files.""" @@ -83,6 +87,14 @@ def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: assert mtx is not None return np.array(mtx) + def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None: + self.file_path.touch(0o664, exist_ok=True) + scipy.io.mmwrite( + self.file_path.as_posix(), + data, + comment=f"Created with CSSFinder {cssfinder.__version__}.", + ) + FORMAT_TO_LOADER: dict[str, Type[MatrixIO]] = { ".mtx": MatrixMarketIO, diff --git a/cssfinder/log.py b/cssfinder/log.py index 93c2c30..f0e3377 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -1,6 +1,6 @@ +#!/usr/bin/python3 # Copyright 2023 Krzysztof Wiśniewski # -# # Permission is hereby granted, free of charge, to any person obtaining a copy of this # software and associated documentation files (the “Software”), to deal in the Software # without restriction, including without limitation the rights to use, copy, modify, @@ -19,14 +19,29 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains logging utilities used by CSSFinder package.""" +"""This module contains functions performing logger configuration. +Example: +-------- +``` +from log import configure_logger +configure_logger(verbosity=2, logger_name="msts", use_rich=False) +``` +This would configure logger to log messages with severity INFO or higher without +coloring in console. +Project repository: https://github.com/Argmaster/decent-logger-config +""" + from __future__ import annotations import logging import sys -from logging import handlers +from logging import LogRecord, handlers from pathlib import Path -from typing import Any, MutableMapping +from typing import Any, Optional + +from rich.console import Console +from rich.logging import RichHandler +from rich.text import Text LOGGER: logging.Logger VERBOSITY_MAP: dict[int, int] = { @@ -36,110 +51,152 @@ 3: logging.DEBUG, } LOG_ENCODING: str = "utf-8" -LOG_DIR: Path = Path("log") -LOG_FILE: Path = LOG_DIR / "cssfinder.log" -from inspect import signature +__version__ = "1.0.0-rc3" -class _FormatStr: - def __init__(self, fmt: str, args: Any, kwargs: MutableMapping[str, Any]) -> None: - self.fmt = fmt - self.args = args - self.kwargs = kwargs +class MarkupStripFormatter(logging.Formatter): + """Formatter subclass configured to remove rich library color tagging from log + messages.""" - def __str__(self) -> str: - disable_format = self.kwargs.get("extra", {}).get("disable_format", False) - if disable_format: - return self.fmt - try: - return str(self.fmt).format(*self.args, **self.kwargs) - except (IndexError, KeyError): - return str(self.fmt) + def format(self, record: LogRecord) -> str: + string = super().format(record) + # render strings with rich + seg_list = Text.from_markup(string).render(Console()) + # but use only text part to get rid of all formatting + return "".join(seg.text for seg in seg_list) -class FormatStringAdapter(logging.LoggerAdapter): - """Logger adapter adding .format() formatting style support to log commands.""" +class NoHighlightRichHandler(RichHandler): + """This is a RichHandler subclass which permanently disables message highlighting + (coloring of integers, strings, etc.).""" - def log(self, level: int, msg: Any, *args: Any, **kwargs: Any) -> None: - if self.isEnabledFor(level): - msg, log_kwargs = self.process(msg, kwargs) - self.logger._log( # pylint: disable=protected-access - level, - _FormatStr(msg, args, kwargs), - (), - **log_kwargs, - ) + def __init__(self, *args: Any, **kwargs: Any) -> None: + super().__init__(*args, **kwargs) + self.highlighter = None # type: ignore - def process( - self, msg: _FormatStr, kwargs: MutableMapping[str, Any] - ) -> tuple[_FormatStr, MutableMapping[str, Any]]: - return msg, { - key: kwargs[key] - for key in signature( - self.logger._log # pylint: disable=protected-access - ).parameters - if key in kwargs - } - - -def enable_logging(verbosity: int) -> None: - """Configure global logger for cssfinder. +def configure_logger( + *, + verbosity: int, + logger_name: str, + use_rich: bool, + log_dir: Optional[Path] = None, + auto_rollover_sec: int = 24 * 60 * 60, + max_log_files: int = 10, +) -> None: + """Configure global logger with stream and file handler. Parameters ---------- verbosity : int Specifies verbosity, 0 is critical, 3 or more is debug, intermediate values accordingly. When value exceeds this range, it is capped. + logger_name : str + Name of global logger, usually name of your package (or script) is a good + choice. + use_rich : bool + Toggle rich logging to console. When disabled, all rich-specific color tagging + will be removed from logged messages. + auto_rollover_sec: int + Max number of seconds after which automatic log file rollover will be performed. + max_log_files: int + Max number of log files stored in log directory. After reaching max, oldest will + be overwritten. """ - global LOGGER # pylint: disable=global-statement - + # Clamp verbosity between 0 and 3. verbosity = min(3, max(0, verbosity)) + logger = logging.getLogger() + # global logger must have verbosity level set to DEBUG as we want out log files + # to contain all log messages, and using any higher level would discard debug + # messages before passing them to file handler. global_verbosity = logging.DEBUG - logger = logging.getLogger("cssfinder") logger.setLevel(global_verbosity) + logger.handlers.clear() - formatter = logging.Formatter( - "[%(asctime)s] - %(name)s - %(levelname)s - %(message)s", - datefmt="%y.%m.%d %H:%M:%S", + # Log file handler - fixed log level to DEBUG + file_handler = _create_file_handler( + logger_name, log_dir or Path.cwd() / "log", auto_rollover_sec, max_log_files ) + logger.addHandler(file_handler) + + # Console logging handler - variable log level + stream_handler = _create_stream_handler(verbosity, use_rich) + logger.addHandler(stream_handler) + +def _create_stream_handler(verbosity: int, use_rich: bool) -> logging.Handler: + # By default stderr may have different encoding which may result in coding errors + # in least expected places in code after unfortunate use of some complex character. sys.stderr.reconfigure(encoding=LOG_ENCODING) # type: ignore + if use_rich: + # Rich library stream handler allowing for colorful log. + stream_handler: logging.Handler = NoHighlightRichHandler( + rich_tracebacks=False, + markup=True, + omit_repeated_times=False, + ) + # Intentionally no formatter is set in this branch, rich's default is good. + else: + # This stream handler will not use color tagging and thanks to special formatter + # all coloring tags compatible with rich will be removed from log. + stream_handler = logging.StreamHandler(sys.stderr) + formatter = MarkupStripFormatter( + fmt="%(asctime)s [%(levelname)-5.5s] %(message)s", + datefmt="%y.%m.%d %H:%M:%S", + ) + stream_handler.setFormatter(formatter) + + # Stream handler is only one which verbosity may vary, to avoid cluttering console + # to much. stream_verbosity = VERBOSITY_MAP.get(verbosity, 3) - stream_handler = logging.StreamHandler(sys.stderr) stream_handler.setLevel(stream_verbosity) - stream_handler.setFormatter(formatter) - logger.addHandler(stream_handler) + return stream_handler - LOG_DIR.mkdir(0o777, True, True) - log_file_already_exists = LOG_FILE.exists() - file_verbosity = logging.DEBUG +def _create_file_handler( + logger_name: str, + log_dir: Path, + auto_rollover_sec: int, + max_log_files: int, +) -> logging.Handler: + # Create logging directory before trying to put files there. + log_dir.mkdir(0o777, True, True) + log_file = log_dir / logger_name + # If file already exists, logger may decide to start appending its logs to it, + # which is not desired - preferably, one file for one session. + log_file_already_exists = log_file.exists() + file_handler = handlers.TimedRotatingFileHandler( - LOG_FILE, + log_file, # Only way to get full time stamp is to select "S" - seconds when="S", # Roll over during execution only after 24h, but time stamp includes seconds, # thus rollover on the beginning of execution will be noticed after 1 second - interval=24 * 60 * 60, - backupCount=10, + interval=auto_rollover_sec, + backupCount=max_log_files, encoding=LOG_ENCODING, ) + # Log file has fixed verbosity to make it possible to determine the issue after + # system crash. + file_verbosity = logging.DEBUG file_handler.setLevel(file_verbosity) + + # Format tagging specific to rich will not make log file any easier to read, + # therefore special formatter is used which will remove all excessive elements + # from log. + formatter = MarkupStripFormatter( + fmt="%(asctime)s [%(levelname)-5.5s] %(message)s", + datefmt="%y.%m.%d %H:%M:%S", + ) file_handler.setFormatter(formatter) + # As mentioned above, when this variable was created, we may need to manually do + # rollover to get new file for logging after startup. if log_file_already_exists: file_handler.doRollover() - logger.addHandler(file_handler) - - LOGGER = FormatStringAdapter(logger) # type: ignore - - -def get_logger() -> logging.Logger: - """Return CSSFinder logger instance.""" - return LOGGER + return file_handler diff --git a/cssfinder/project/__init__.py b/cssfinder/project/__init__.py index 7cd2caf..7b7dfeb 100644 --- a/cssfinder/project/__init__.py +++ b/cssfinder/project/__init__.py @@ -26,9 +26,9 @@ from __future__ import annotations import json +import logging from pathlib import Path -from cssfinder.log import get_logger from cssfinder.project.cssfproject import CSSFProject @@ -50,7 +50,6 @@ def load_project_from(file_or_directory: str | Path) -> CSSFProject: InvalidCSSFProjectContent Raised when project file content is not a dictionary. """ - logger = get_logger() # Unify path type to Path file_or_directory = Path(file_or_directory).expanduser().resolve() @@ -65,7 +64,7 @@ def load_project_from(file_or_directory: str | Path) -> CSSFProject: file_path = file_or_directory del file_or_directory - logger.debug(f"Resolved project path to {file_path.as_posix()!r}") + logging.debug("Resolved project path to %r", file_path.as_posix()) content = file_path.read_text(encoding="utf-8") try: @@ -74,7 +73,7 @@ def load_project_from(file_or_directory: str | Path) -> CSSFProject: raise MalformedProjectFileError() from exc if not isinstance(content, dict): - logger.critical("Content of cssfproject.json file is not a dictionary.") + logging.critical("Content of cssfproject.json file is not a dictionary.") raise InvalidCSSFProjectContent(content) project = CSSFProject(**content) diff --git a/cssfinder/project/cssfproject.py b/cssfinder/project/cssfproject.py index 7368e25..7e245b8 100644 --- a/cssfinder/project/cssfproject.py +++ b/cssfinder/project/cssfproject.py @@ -28,14 +28,13 @@ from __future__ import annotations +import logging from enum import Enum from pathlib import Path from typing import Optional, Type, TypeVar from pydantic import BaseModel, ConstrainedStr, EmailStr, Extra, Field -from cssfinder.log import get_logger - class CSSFProject(BaseModel): """CSSFProject file specification.""" @@ -74,6 +73,13 @@ def directory(self) -> Path: return Path.cwd() return self._file.parent + @property + def output(self) -> Path: + """Path to output directory for this project.""" + directory = self.directory / "output" + directory.mkdir(0o764, True, True) + return directory + def expand_path(self, path: str) -> str: """Expand all special variables in path string. @@ -94,8 +100,7 @@ def expand_path(self, path: str) -> str: def info_display(self) -> None: """Display configuration content.""" - logger = get_logger() - logger.info("\n" + self.json(indent=2), extra=dict(disable_format=True)) + logging.info("%s", "\n" + self.json(indent=2)) class Meta(BaseModel): diff --git a/cssfinder/report.py b/cssfinder/report.py new file mode 100644 index 0000000..7c9763e --- /dev/null +++ b/cssfinder/report.py @@ -0,0 +1,22 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +from __future__ import annotations diff --git a/poetry.lock b/poetry.lock index e4cd5a7..292c307 100644 --- a/poetry.lock +++ b/poetry.lock @@ -14,14 +14,14 @@ files = [ [[package]] name = "astroid" -version = "2.13.3" +version = "2.14.2" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false python-versions = ">=3.7.2" files = [ - {file = "astroid-2.13.3-py3-none-any.whl", hash = "sha256:14c1603c41cc61aae731cad1884a073c4645e26f126d13ac8346113c95577f3b"}, - {file = "astroid-2.13.3.tar.gz", hash = "sha256:6afc22718a48a689ca24a97981ad377ba7fb78c133f40335dfd16772f29bcfb1"}, + {file = "astroid-2.14.2-py3-none-any.whl", hash = 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{file = "zipp-3.11.0-py3-none-any.whl", hash = "sha256:83a28fcb75844b5c0cdaf5aa4003c2d728c77e05f5aeabe8e95e56727005fbaa"}, - {file = "zipp-3.11.0.tar.gz", hash = "sha256:a7a22e05929290a67401440b39690ae6563279bced5f314609d9d03798f56766"}, + {file = "zipp-3.14.0-py3-none-any.whl", hash = "sha256:188834565033387710d046e3fe96acfc9b5e86cbca7f39ff69cf21a4128198b7"}, + {file = "zipp-3.14.0.tar.gz", hash = "sha256:9e5421e176ef5ab4c0ad896624e87a7b2f07aca746c9b2aa305952800cb8eecb"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "ff349197eb217f487fa3a0aa37c57b4f0bafaa6989780138a454676c9691a916" +content-hash = "d3fca6417c70e00b5c246d96f24a78052c3f7df2a4afdbb585f38c8a21e8c4d2" diff --git a/pyproject.toml b/pyproject.toml index 30753a7..20b0ef0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,6 +20,7 @@ pydantic = "^1.10.5" packaging = "^23.0" email-validator = "^1.3.1" typing-extensions = "^4.5.0" +rich = "^13.3.1" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" @@ -35,6 +36,7 @@ ptpython = "^3.0.22" typing-extensions = "^4.4.0" snakeviz = "^2.1.1" poethepoet = "^0.18.1" +poetry = "^1.3.2" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" @@ -462,7 +464,7 @@ known-third-party = [] [tool.pylint.logging] # ANCHOR: tool.pylint.logging # The type of string formatting that logging methods do. `old` means using % # formatting, `new` is for `{}` formatting. -logging-format-style = "new" +logging-format-style = "old" # Logging modules to check that the string format arguments are in logging # function parameter format. logging-modules = ["logging"] From 23c01126eed54698a9d8add0b529625df955e920 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 27 Feb 2023 01:49:58 +0100 Subject: [PATCH 038/227] Implemented template based implementation code generation --- cssfinder/__init__.py | 2 +- cssfinder/algorithm/backend/__init__.py | 15 +- .../backend/numpy/_impl/_complex128.py | 161 +++++++------ .../backend/numpy/_impl/_complex64.py | 204 ++++++++++++++++ .../algorithm/backend/numpy/_impl/_float32.py | 205 ++++++++++++++++ .../algorithm/backend/numpy/_impl/_float64.py | 205 ++++++++++++++++ .../backend/numpy/_impl/_type.py.jinja2 | 0 cssfinder/algorithm/backend/numpy/base.py | 74 ++++-- .../algorithm/backend/numpy/complex128.py | 12 +- .../algorithm/backend/numpy/complex64.py | 42 ++++ cssfinder/algorithm/backend/numpy/float32.py | 42 ++++ cssfinder/algorithm/backend/numpy/float64.py | 42 ++++ cssfinder/algorithm/backend/numpy/impl.py | 38 +-- cssfinder/algorithm/gilbert.py | 4 +- cssfinder/cli.py | 1 + poetry.lock | 80 ++++++- pyproject.toml | 4 +- scripts/gen_numpy_impl.py | 50 ++++ scripts/templates/numpy.pyjinja2 | 222 ++++++++++++++++++ 19 files changed, 1288 insertions(+), 115 deletions(-) create mode 100644 cssfinder/algorithm/backend/numpy/_impl/_complex64.py create mode 100644 cssfinder/algorithm/backend/numpy/_impl/_float32.py create mode 100644 cssfinder/algorithm/backend/numpy/_impl/_float64.py delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 create mode 100644 cssfinder/algorithm/backend/numpy/complex64.py create mode 100644 cssfinder/algorithm/backend/numpy/float32.py create mode 100644 cssfinder/algorithm/backend/numpy/float64.py create mode 100644 scripts/gen_numpy_impl.py create mode 100644 scripts/templates/numpy.pyjinja2 diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 7fd7251..b3818d4 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -24,4 +24,4 @@ from __future__ import annotations -__version__ = "0.1.0" +__version__ = "1.0.0" diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 1b32755..53052f7 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -29,6 +29,9 @@ from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 +from cssfinder.algorithm.backend.numpy.complex64 import NumPyC64 +from cssfinder.algorithm.backend.numpy.float64 import NumPyF64 +from cssfinder.algorithm.backend.numpy.float32 import NumPyF32 from cssfinder.project.cssfproject import Backend, Precision @@ -37,8 +40,16 @@ def new(backend: Backend, precision: Precision) -> Type[BackendBase]: if backend == Backend.NumPy: if precision == Precision.Complex128: return NumPyC128 - - raise UnsupportedBackendError(f"Backend {backend.name!r} not supported.") + if precision == Precision.Complex64: + return NumPyC64 + if precision == Precision.Float64: + return NumPyF64 + if precision == Precision.Float32: + return NumPyF32 + + raise UnsupportedBackendError( + f"Backend {backend.name!r} with precision {precision.name!r} not supported." + ) class UnsupportedBackendError(Exception): diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 1145fb3..5fa6b73 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -18,63 +18,25 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. +"""This module contains implementation of backend operations in numpy. -"""This module contains implementation of Gilbert algorithm using numpy and complex128 -precision.""" -from __future__ import annotations +Spec +---- + +- Primary precision: np.complex128 +- Floating precision: np.float64 +- Complex precision: np.complex128 -from typing import cast +""" + +from __future__ import annotations import numpy as np import numpy.typing as npt from numba import jit -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] -) -> np.float64: - """Calculate scalar product of two matrices.""" - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Normalization of a vector.""" - mtx2 = np.dot(mtx, np.conj(mtx)) - val = np.sqrt(np.real(mtx2)) - return mtx / val # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: - """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - return real + 1j * imaginary - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Build a projection from a vector.""" - return np.outer(mtx1, np.conj(mtx1)) - - -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) - - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) - vector = np.outer(vector, idx_vector).flatten() - - vector = project(vector) - return vector # type: ignore - - -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) +@jit(forceobj=True) def optimize_d_fs( rho2: npt.NDArray[np.complex128], rho3: npt.NDArray[np.complex128], @@ -106,34 +68,91 @@ def optimize_d_fs( rotated_2 = rotate(rotated_2, unitary) product_rot2_3 = product(rotated_2, rho3) - return rotated_2 + return rotated_2.astype(np.complex128, copy=False) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] +) -> np.float64: + """Calculate scalar product of two matrices.""" + + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) +@jit(forceobj=True, cache=True) def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex128]: """N quDits.""" value = _random_unitary_d_fs_val(depth) mtx = expand_d_fs(value, depth, quantity, idx) - return mtx + + return mtx # type: ignore + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = _REAL + _IMAG - 1 @jit(nopython=True, nogil=True, cache=True) def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: - real = np.cos(0.01 * np.pi) - imag = 1j * np.sin(0.01 * np.pi) - value = real + imag - 1 - random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth).astype(np.complex128) - value = np.add(np.multiply(value, random_mtx), identity_mtx) - return value + identity_mtx = np.identity(depth) + + rand_mul = np.multiply(_VALUE, random_mtx) + + value = np.add(rand_mul, identity_mtx) + + return value # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + """Random n quDit state.""" + vector = normalize(get_random_haar(depth)) + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) + vector = np.outer(vector, idx_vector).flatten() + + vector = project(vector) -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + return (real + 1j * imaginary).astype(np.complex128) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) def expand_d_fs( value: npt.NDArray[np.complex128], depth: int, @@ -141,20 +160,22 @@ def expand_d_fs( idx: int, ) -> npt.NDArray[np.complex128]: """Expand an operator to n quDits.""" + depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype(np.complex128) + identity_1 = np.identity(depth_1).astype(np.complex128, copy=False) depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype(np.complex128) + identity_2 = np.identity(depth_2).astype(np.complex128, copy=False) kronecker_1 = kronecker(identity_1, value) kronecker_2 = kronecker(kronecker_1, identity_2) - return cast(npt.NDArray[np.complex128], kronecker_2) + retval = kronecker_2.astype(np.complex128, copy=False) + + return retval # type: ignore -# @jit(nopython=True, nogil=True, cache=True) -# @jit(forceobj=True) +@jit(forceobj=True, cache=True) def kronecker( mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: @@ -166,7 +187,9 @@ def kronecker( dot_0_1 = np.tensordot(mtx, mtx1, 0) out_mtx = np.swapaxes(dot_0_1, 1, 2) - return out_mtx.reshape(output_shape) + retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) + + return retval # type: ignore @jit(nopython=True, nogil=True, cache=True) @@ -174,6 +197,8 @@ def rotate( rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: """Sandwich an operator with a unitary.""" + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py new file mode 100644 index 0000000..493d145 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -0,0 +1,204 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains implementation of backend operations in numpy. + +Spec +---- + +- Primary precision: np.complex64 +- Floating precision: np.float32 +- Complex precision: np.complex64 + +""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt +from numba import jit + + +@jit(forceobj=True) +def optimize_d_fs( + rho2: npt.NDArray[np.complex64], + rho3: npt.NDArray[np.complex64], + depth: int, + quantity: int, + epochs: int, +) -> npt.NDArray[np.complex64]: + """Optimize implementation for FSnQd mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + idx_mod = idx % int(quantity) + unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2.astype(np.complex64, copy=False) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.complex64], matrix2: npt.NDArray[np.complex64] +) -> np.float32: + """Calculate scalar product of two matrices.""" + + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + + +@jit(forceobj=True, cache=True) +def random_unitary_d_fs( + depth: int, quantity: int, idx: int +) -> npt.NDArray[np.complex64]: + """N quDits.""" + value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) + + return mtx # type: ignore + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = _REAL + _IMAG - 1 + + +@jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex64]: + random_mtx = random_d_fs(depth, 1) + identity_mtx = np.identity(depth) + + rand_mul = np.multiply(_VALUE, random_mtx) + + value = np.add(rand_mul, identity_mtx) + + return value # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: + """Random n quDit state.""" + vector = normalize(get_random_haar(depth)) + + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) + vector = np.outer(vector, idx_vector).flatten() + + vector = project(vector) + + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar(depth: int) -> npt.NDArray[np.complex64]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + return (real + 1j * imaginary).astype(np.complex64) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def expand_d_fs( + value: npt.NDArray[np.complex64], + depth: int, + quantity: int, + idx: int, +) -> npt.NDArray[np.complex64]: + """Expand an operator to n quDits.""" + + depth_1 = int(depth**idx) + identity_1 = np.identity(depth_1).astype(np.complex64, copy=False) + + depth_2 = int(depth ** (quantity - idx - 1)) + identity_2 = np.identity(depth_2).astype(np.complex64, copy=False) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + retval = kronecker_2.astype(np.complex64, copy=False) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def kronecker( + mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] +) -> npt.NDArray[np.complex64]: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.complex64], unitary: npt.NDArray[np.complex64] +) -> npt.NDArray[np.complex64]: + """Sandwich an operator with a unitary.""" + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + + return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_float32.py b/cssfinder/algorithm/backend/numpy/_impl/_float32.py new file mode 100644 index 0000000..28d3f74 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/_impl/_float32.py @@ -0,0 +1,205 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains implementation of backend operations in numpy. + +Spec +---- + +- Primary precision: np.float32 +- Floating precision: np.float32 +- Complex precision: np.complex64 + +""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt +from numba import jit + + +@jit(forceobj=True) +def optimize_d_fs( + rho2: npt.NDArray[np.float32], + rho3: npt.NDArray[np.float32], + depth: int, + quantity: int, + epochs: int, +) -> npt.NDArray[np.float32]: + """Optimize implementation for FSnQd mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + idx_mod = idx % int(quantity) + unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2.astype(np.float32, copy=False) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.float32], matrix2: npt.NDArray[np.float32] +) -> np.float32: + """Calculate scalar product of two matrices.""" + + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + + +@jit(forceobj=True, cache=True) +def random_unitary_d_fs(depth: int, quantity: int, idx: int) -> npt.NDArray[np.float32]: + """N quDits.""" + value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) + + return mtx # type: ignore + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = _REAL + _IMAG - 1 + + +@jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.float32]: + random_mtx = random_d_fs(depth, 1) + identity_mtx = np.identity(depth) + + rand_mul = np.multiply(_VALUE, random_mtx) + rand_mul = rand_mul.real + + value = np.add(rand_mul, identity_mtx) + + return value # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.float32]: + """Random n quDit state.""" + vector = normalize(get_random_haar(depth)) + + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) + vector = np.outer(vector, idx_vector).flatten() + + vector = vector.real + + vector = project(vector) + + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar(depth: int) -> npt.NDArray[np.complex64]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + return (real + 1j * imaginary).astype(np.complex64) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.float32]) -> npt.NDArray[np.float32]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def expand_d_fs( + value: npt.NDArray[np.float32], + depth: int, + quantity: int, + idx: int, +) -> npt.NDArray[np.float32]: + """Expand an operator to n quDits.""" + + depth_1 = int(depth**idx) + identity_1 = np.identity(depth_1).astype(np.float32, copy=False) + + depth_2 = int(depth ** (quantity - idx - 1)) + identity_2 = np.identity(depth_2).astype(np.float32, copy=False) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + retval = kronecker_2.astype(np.float32, copy=False) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def kronecker( + mtx: npt.NDArray[np.float32], mtx1: npt.NDArray[np.float32] +) -> npt.NDArray[np.float32]: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype(np.float32, copy=False) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.float32], unitary: npt.NDArray[np.float32] +) -> npt.NDArray[np.float32]: + """Sandwich an operator with a unitary.""" + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + + return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_float64.py b/cssfinder/algorithm/backend/numpy/_impl/_float64.py new file mode 100644 index 0000000..9642d98 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/_impl/_float64.py @@ -0,0 +1,205 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains implementation of backend operations in numpy. + +Spec +---- + +- Primary precision: np.float64 +- Floating precision: np.float64 +- Complex precision: np.complex128 + +""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt +from numba import jit + + +@jit(forceobj=True) +def optimize_d_fs( + rho2: npt.NDArray[np.float64], + rho3: npt.NDArray[np.float64], + depth: int, + quantity: int, + epochs: int, +) -> npt.NDArray[np.float64]: + """Optimize implementation for FSnQd mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + idx_mod = idx % int(quantity) + unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2.astype(np.float64, copy=False) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.float64], matrix2: npt.NDArray[np.float64] +) -> np.float64: + """Calculate scalar product of two matrices.""" + + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + + +@jit(forceobj=True, cache=True) +def random_unitary_d_fs(depth: int, quantity: int, idx: int) -> npt.NDArray[np.float64]: + """N quDits.""" + value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) + + return mtx # type: ignore + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = _REAL + _IMAG - 1 + + +@jit(nopython=True, nogil=True, cache=True) +def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.float64]: + random_mtx = random_d_fs(depth, 1) + identity_mtx = np.identity(depth) + + rand_mul = np.multiply(_VALUE, random_mtx) + rand_mul = rand_mul.real + + value = np.add(rand_mul, identity_mtx) + + return value # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.float64]: + """Random n quDit state.""" + vector = normalize(get_random_haar(depth)) + + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) + vector = np.outer(vector, idx_vector).flatten() + + vector = vector.real + + vector = project(vector) + + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + return (real + 1j * imaginary).astype(np.complex128) # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.float64]) -> npt.NDArray[np.float64]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def expand_d_fs( + value: npt.NDArray[np.float64], + depth: int, + quantity: int, + idx: int, +) -> npt.NDArray[np.float64]: + """Expand an operator to n quDits.""" + + depth_1 = int(depth**idx) + identity_1 = np.identity(depth_1).astype(np.float64, copy=False) + + depth_2 = int(depth ** (quantity - idx - 1)) + identity_2 = np.identity(depth_2).astype(np.float64, copy=False) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + retval = kronecker_2.astype(np.float64, copy=False) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def kronecker( + mtx: npt.NDArray[np.float64], mtx1: npt.NDArray[np.float64] +) -> npt.NDArray[np.float64]: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype(np.float64, copy=False) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.float64], unitary: npt.NDArray[np.float64] +) -> npt.NDArray[np.float64]: + """Sandwich an operator with a unitary.""" + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + + return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 b/cssfinder/algorithm/backend/numpy/_impl/_type.py.jinja2 deleted file mode 100644 index e69de29..0000000 diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 8435fef..920e2bc 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -23,23 +23,35 @@ specific precision.""" from __future__ import annotations +from typing import Generic, Type, TypeVar, cast import numpy as np import numpy.typing as npt +from numba import jit + from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy.impl import Implementation from cssfinder.io.asset_loader import State from cssfinder.project.cssfproject import AlgoMode -class NumPyBase(BackendBase): +PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64, np.float64, np.float32) +SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) + + +class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): """Implementation of Gilbert algorithm using python numpy library.""" - _visibility: npt.NDArray[np.complex128] - _intermediate: npt.NDArray[np.complex128] + _visibility: npt.NDArray[PRIMARY] + _intermediate: npt.NDArray[PRIMARY] + _visibility_reduced: npt.NDArray[PRIMARY] + _corrections: list[tuple[int, int, float]] - impl: Implementation + + impl: Implementation[PRIMARY, SECONDARY_co] + primary_t: Type[PRIMARY] + secondary_t: Type[SECONDARY_co] def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: super().__init__(initial, mode, visibility) @@ -48,27 +60,37 @@ def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: self._intermediate = self._create_intermediate_state() self._corrections = [] - self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) - self._aa6 = self.impl.product(self._intermediate, self._intermediate) - self._visibility_reduced = self._visibility - self._intermediate - self._dd1 = self.impl.product(self._intermediate, self._visibility_reduced) + self._aa4: SECONDARY_co = 2 * self.impl.product( + self._visibility, self._intermediate + ) + self._aa6: SECONDARY_co = self.impl.product( + self._intermediate, self._intermediate + ) + self._visibility_reduced = cast( + npt.NDArray[PRIMARY], (self._visibility - self._intermediate) + ) + self._dd1: SECONDARY_co = self.impl.product( + self._intermediate, self._visibility_reduced + ) - def _create_visibility_matrix(self) -> npt.NDArray[np.complex128]: + def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: vis_state = self.visibility * self.initial.state inv_vis_ident = (1 - self.visibility) * np.identity( len(self.initial.state), dtype=np.complex128 ) - return vis_state + inv_vis_ident / len(self.initial.state) + return (vis_state + inv_vis_ident / len(self.initial.state)).astype( + self.primary_t + ) - def _create_intermediate_state(self) -> npt.NDArray[np.complex128]: + def _create_intermediate_state(self) -> npt.NDArray[PRIMARY]: intermediate = np.zeros_like(self._visibility, dtype=np.complex128) np.fill_diagonal(intermediate, self._visibility.diagonal()) - return intermediate + return intermediate.astype(self.primary_t) @property def state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" - return self._intermediate.copy() + return self._intermediate.copy().astype(np.complex128) @property def corrections(self) -> list[tuple[int, int, float]]: @@ -80,6 +102,7 @@ def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" return len(self._corrections) + @jit(forceobj=True, cache=True, looplift=False) def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" @@ -98,9 +121,10 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: alternative_state, iterations, epoch_index, epochs, iteration_index ) + @jit(forceobj=True, cache=True, looplift=False, inline="always") def _update_state( self, - alternative_state: npt.NDArray[np.complex128], + alternative_state: npt.NDArray[PRIMARY], iterations: int, epoch_index: int, epochs: int, @@ -113,18 +137,26 @@ def _update_state( alternative_state, self._visibility_reduced, depth, quantity, epochs ) - aa3 = self.impl.product(alternative_state, alternative_state) - aa2 = 2 * self.impl.product(self._visibility, alternative_state) - aa5 = 2 * self.impl.product(self._intermediate, alternative_state) + aa3: SECONDARY_co = self.impl.product(alternative_state, alternative_state) + aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) + aa5: SECONDARY_co = 2 * self.impl.product(self._intermediate, alternative_state) - param = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / (2 * (self._aa6 - aa5 + aa3)) + param: SECONDARY_co = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / ( + 2 * (self._aa6 - aa5 + aa3) + ) if 0 <= param <= 1: - self._intermediate = ( - param * self._intermediate + (1 - param) * alternative_state + inv_alternative_state: npt.NDArray[PRIMARY] = cast( + npt.NDArray[PRIMARY], ((1 - param) * alternative_state) + ) + self._intermediate = cast( + npt.NDArray[PRIMARY], + (param * self._intermediate) + inv_alternative_state, ) - self._visibility_reduced = self._visibility - self._intermediate + self._visibility_reduced = cast( + npt.NDArray[PRIMARY], (self._visibility - self._intermediate) + ) self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) self._aa6 = self.impl.product(self._intermediate, self._intermediate) self._dd1 = self._aa4 / 2 - self._aa6 diff --git a/cssfinder/algorithm/backend/numpy/complex128.py b/cssfinder/algorithm/backend/numpy/complex128.py index cc029c5..c9badde 100644 --- a/cssfinder/algorithm/backend/numpy/complex128.py +++ b/cssfinder/algorithm/backend/numpy/complex128.py @@ -23,14 +23,20 @@ from __future__ import annotations -from typing import cast +from typing import Type, cast + +import numpy as np from cssfinder.algorithm.backend.numpy._impl import _complex128 from cssfinder.algorithm.backend.numpy.base import NumPyBase from cssfinder.algorithm.backend.numpy.impl import Implementation -class NumPyC128(NumPyBase): +class NumPyC128(NumPyBase[np.complex128, np.float64]): """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" - impl: Implementation = cast(Implementation, _complex128) + impl: Implementation[np.complex128, np.float64] = cast( + Implementation[np.complex128, np.float64], _complex128 + ) + primary_t: Type[np.complex128] = np.complex128 + secondary_t: Type[np.float64] = np.float64 diff --git a/cssfinder/algorithm/backend/numpy/complex64.py b/cssfinder/algorithm/backend/numpy/complex64.py new file mode 100644 index 0000000..86ec288 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/complex64.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Numpy backend with fixed precision of complex 128-bit.""" + +from __future__ import annotations + +from typing import Type, cast + +import numpy as np + +from cssfinder.algorithm.backend.numpy._impl import _complex64 +from cssfinder.algorithm.backend.numpy.base import NumPyBase +from cssfinder.algorithm.backend.numpy.impl import Implementation + + +class NumPyC64(NumPyBase[np.complex64, np.float32]): + """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" + + impl: Implementation[np.complex64, np.float32] = cast( + Implementation[np.complex64, np.float32], _complex64 + ) + primary_t: Type[np.complex64] = np.complex64 + secondary_t: Type[np.float32] = np.float32 diff --git a/cssfinder/algorithm/backend/numpy/float32.py b/cssfinder/algorithm/backend/numpy/float32.py new file mode 100644 index 0000000..e5159c7 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/float32.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Numpy backend with fixed precision of complex 128-bit.""" + +from __future__ import annotations + +from typing import Type, cast + +import numpy as np + +from cssfinder.algorithm.backend.numpy._impl import _float64 +from cssfinder.algorithm.backend.numpy.base import NumPyBase +from cssfinder.algorithm.backend.numpy.impl import Implementation + + +class NumPyF32(NumPyBase[np.float32, np.float32]): + """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" + + impl: Implementation[np.float32, np.float32] = cast( + Implementation[np.float32, np.float32], _float64 + ) + primary_t: Type[np.float32] = np.float32 + secondary_t: Type[np.float32] = np.float32 diff --git a/cssfinder/algorithm/backend/numpy/float64.py b/cssfinder/algorithm/backend/numpy/float64.py new file mode 100644 index 0000000..38d2b92 --- /dev/null +++ b/cssfinder/algorithm/backend/numpy/float64.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Numpy backend with fixed precision of complex 128-bit.""" + +from __future__ import annotations + +from typing import Type, cast + +import numpy as np + +from cssfinder.algorithm.backend.numpy._impl import _float64 +from cssfinder.algorithm.backend.numpy.base import NumPyBase +from cssfinder.algorithm.backend.numpy.impl import Implementation + + +class NumPyF64(NumPyBase[np.float64, np.float64]): + """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" + + impl: Implementation[np.float64, np.float64] = cast( + Implementation[np.float64, np.float64], _float64 + ) + primary_t: Type[np.float64] = np.float64 + secondary_t: Type[np.float64] = np.float64 diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index 6415c5a..1ba2743 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -23,80 +23,84 @@ backends.""" from __future__ import annotations +from typing import Generic, TypeVar import numpy as np import numpy.typing as npt from typing_extensions import Protocol +PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64, np.float64, np.float32) +SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) -class Implementation(Protocol): + +class Implementation(Generic[PRIMARY, SECONDARY_co], Protocol): """Implementation of Gilbert algorithm utilities with specific precision.""" @staticmethod def product( - matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] - ) -> np.float64: + matrix1: npt.NDArray[PRIMARY], matrix2: npt.NDArray[PRIMARY] + ) -> SECONDARY_co: """Calculate scalar product of two matrices.""" ... @staticmethod - def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + def normalize(mtx: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: """Normalization of a vector.""" ... @staticmethod - def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: + def get_random_haar(depth: int) -> npt.NDArray[PRIMARY]: """Generate a random vector with Haar measure.""" ... @staticmethod - def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + def project(mtx1: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: """Build a projection from a vector.""" ... @staticmethod - def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + def random_d_fs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: """Random n quDit state.""" ... @staticmethod def optimize_d_fs( - rho2: npt.NDArray[np.complex128], - rho3: npt.NDArray[np.complex128], + rho2: npt.NDArray[PRIMARY], + rho3: npt.NDArray[PRIMARY], depth: int, quantity: int, epochs: int, - ) -> npt.NDArray[np.complex128]: + ) -> npt.NDArray[PRIMARY]: """Optimize implementation for FSnQd mode.""" ... @staticmethod def random_unitary_d_fs( depth: int, quantity: int, idx: int - ) -> npt.NDArray[np.complex128]: + ) -> npt.NDArray[PRIMARY]: """N quDits.""" ... @staticmethod def expand_d_fs( # pylint: disable=invalid-name - value: npt.NDArray[np.complex128], + value: npt.NDArray[PRIMARY], depth: int, quantity: int, idx: int, - ) -> npt.NDArray[np.complex128]: + ) -> npt.NDArray[PRIMARY]: """Expand an operator to n quDits.""" ... @staticmethod def kronecker( - mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] - ) -> npt.NDArray[np.complex128]: + mtx: npt.NDArray[PRIMARY], mtx1: npt.NDArray[PRIMARY] + ) -> npt.NDArray[PRIMARY]: """Kronecker Product.""" ... @staticmethod def rotate( - rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] - ) -> npt.NDArray[np.complex128]: + rho2: npt.NDArray[PRIMARY], unitary: npt.NDArray[PRIMARY] + ) -> npt.NDArray[PRIMARY]: """Sandwich an operator with a unitary.""" ... diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index d5ca4b6..b25f769 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -62,10 +62,12 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: for epoch_index in range(epochs): logging.info( - "Executing epoch %r / %r (%.2f)", + "Executing epoch %r / %r (%.2f) - corrections: %r best: %r", epoch_index + 1, epochs, ((epoch_index + 1) / epochs) * 100, + self.backend.corrections_count, + self.backend.corrections[-1][2] if self.backend.corrections_count > 0 else None ) # Run N iterations of algorithm without checking stop conditions. self.backend.run_epoch(iterations, epoch_index) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index eb01592..4937a86 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -54,6 +54,7 @@ def main(verbose: int) -> None: """CSSFinder is a script for finding closest separable states.""" configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) + logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %r", pendulum.now()) if verbose >= 2: diff --git a/poetry.lock b/poetry.lock index 292c307..cd49864 100644 --- a/poetry.lock +++ b/poetry.lock @@ -778,6 +778,24 @@ files = [ test = ["async-timeout", "pytest", "pytest-asyncio (>=0.17)", "pytest-trio", "testpath", "trio"] trio = ["async_generator", "trio"] +[[package]] +name = "jinja2" +version = "3.1.2" +description = "A very fast and expressive template engine." +category = "dev" +optional = false +python-versions = ">=3.7" +files = [ + {file = "Jinja2-3.1.2-py3-none-any.whl", hash = "sha256:6088930bfe239f0e6710546ab9c19c9ef35e29792895fed6e6e31a023a182a61"}, + {file = "Jinja2-3.1.2.tar.gz", hash = "sha256:31351a702a408a9e7595a8fc6150fc3f43bb6bf7e319770cbc0db9df9437e852"}, +] + +[package.dependencies] +MarkupSafe = ">=2.0" + +[package.extras] 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+++ b/pyproject.toml @@ -37,6 +37,7 @@ typing-extensions = "^4.4.0" snakeviz = "^2.1.1" poethepoet = "^0.18.1" poetry = "^1.3.2" +jinja2 = "^3.1.2" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" @@ -46,6 +47,7 @@ cssf = "cssfinder.cli:main" install-hooks = "pre-commit install --install-hooks --overwrite" run-hooks = "pre-commit run --all-files -v" build = "poetry build --format=wheel" +gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } [build-system] requires = ["poetry-core"] @@ -221,7 +223,7 @@ show_absolute_path = true # A comma-separated list of package or module names from where C extensions may # be loaded. Extensions are loading into the active Python interpreter and may # run arbitrary code. -extension-pkg-allow-list = ["pydantic"] +extension-pkg-allow-list = ["pydantic", "black"] # A comma-separated list of package or module names from where C extensions may # be loaded. Extensions are loading into the active Python interpreter and may # run arbitrary code. (This is an alternative name to extension-pkg-allow-list diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py new file mode 100644 index 0000000..f571554 --- /dev/null +++ b/scripts/gen_numpy_impl.py @@ -0,0 +1,50 @@ +"""Script for generating numpy precision backends from template.""" + +import logging +from pathlib import Path +import click +import jinja2 +import black +import black.mode + + +TEMPLATES_DIR = Path(__file__).parent / "templates" +DEFAULT_DEST = Path(__file__).parent.parent / "cssfinder/algorithm/backend/numpy/_impl" + + +@click.command() +@click.option("--dest", default=DEFAULT_DEST, type=Path) +@click.option("-d", "--debug", is_flag=True, default=False) +@click.option("--debug-dtype-checks", is_flag=True, default=False) +def main(dest: Path, debug: bool, debug_dtype_checks: bool) -> None: + """Generate numpy precision backends from template.""" + + env = jinja2.Environment( + loader=jinja2.FileSystemLoader(TEMPLATES_DIR.as_posix()), + autoescape=jinja2.select_autoescape(), + ) + template = env.get_template("numpy.pyjinja2") + + for name, primary, floating, complex_ in [ + ("_complex128.py", "np.complex128", "np.float64", "np.complex128"), + ("_complex64.py", "np.complex64", "np.float32", "np.complex64"), + ("_float64.py", "np.float64", "np.float64", "np.complex128"), + ("_float32.py", "np.float32", "np.float32", "np.complex64"), + ]: + logging.warning("Rendering %r %r %r %r", name, primary, floating, complex_) + source = template.render( + primary=primary, + floating=floating, + complex=complex_, + is_debug=debug, + debug_dtype_checks=debug_dtype_checks, + is_floating=("float" in primary), + ) + source = black.format_str(source, mode=black.mode.Mode()) + (dest / name).write_text(source, "utf-8") + + raise SystemExit(0) + + +if __name__ == "__main__": + main() # pylint: disable=no-value-for-parameter diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 new file mode 100644 index 0000000..9a89770 --- /dev/null +++ b/scripts/templates/numpy.pyjinja2 @@ -0,0 +1,222 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains implementation of backend operations in numpy. + +Spec +---- + +- Primary precision: {{primary}} +- Floating precision: {{floating}} +- Complex precision: {{complex}} + +""" + +from __future__ import annotations + +import numpy as np +import numpy.typing as npt +from numba import jit + + +{% if debug_dtype_checks %} +from typing import Any + + +def assert_dtype(ob: Any, dtype: Any) -> None: + if ob.dtype != dtype: + raise RuntimeError(ob.dtype) +{% endif %} + + +{% if not is_debug %}@jit(forceobj=True) +{% endif %}def optimize_d_fs( + rho2: npt.NDArray[{{primary}}], + rho3: npt.NDArray[{{primary}}], + depth: int, + quantity: int, + epochs: int, +) -> npt.NDArray[{{primary}}]: + """Optimize implementation for FSnQd mode.""" + + product_2_3 = product(rho2, rho3) + + # To make sure rotated_2 is not unbound + unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) + + for idx in range(epochs): + idx_mod = idx % int(quantity) + unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) + + product_rot2_3 = product(rotated_2, rho3) + + if product_2_3 > product_rot2_3: + unitary = unitary.conj().T + rotated_2 = rotate(rho2, unitary) + + while (new_product_2_3 := product_rot2_3) > product_2_3: + product_2_3 = new_product_2_3 + rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) + + return rotated_2.astype({{primary}}, copy=False) # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def product( + matrix1: npt.NDArray[{{primary}}], matrix2: npt.NDArray[{{primary}}] +) -> {{floating}}: + """Calculate scalar product of two matrices.""" + {% if debug_dtype_checks %}assert_dtype(matrix1, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(matrix2, {{primary}}){% endif %} + return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + + +{% if not is_debug %}@jit(forceobj=True, cache=True) +{% endif %}def random_unitary_d_fs( + depth: int, quantity: int, idx: int +) -> npt.NDArray[{{primary}}]: + """N quDits.""" + value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) + {% if debug_dtype_checks %}assert_dtype(mtx, {{primary}}){% endif %} + return mtx # type: ignore + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = _REAL + _IMAG - 1 + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[{{primary}}]: + random_mtx = random_d_fs(depth, 1) + identity_mtx = np.identity(depth) + {% if debug_dtype_checks %}assert_dtype(identity_mtx, np.float64){% endif %} + + rand_mul = np.multiply(_VALUE, random_mtx) + {% if is_floating %}rand_mul = rand_mul.real{%endif%} + {% if debug_dtype_checks %}assert_dtype(rand_mul, {{primary}}){% endif %} + + value = np.add(rand_mul, identity_mtx) + {% if debug_dtype_checks %}assert_dtype(value, {{primary}}){% endif %} + return value # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{primary}}]: + """Random n quDit state.""" + vector = normalize(get_random_haar(depth)) + {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} + + for _ in range(quantity - 1): + idx_vector = normalize(get_random_haar(depth)) + vector = np.outer(vector, idx_vector).flatten() + {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} + {% if is_floating %}vector = vector.real{%endif%} + {% if debug_dtype_checks %}assert_dtype(vector, {{floating}}){% endif %} + vector = project(vector) + {% if debug_dtype_checks %}assert_dtype(vector, {{primary}}){% endif %} + return vector # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def get_random_haar(depth: int) -> npt.NDArray[{{complex}}]: + """Generate a random vector with Haar measure.""" + real = np.random.normal(0, 1, depth) + imaginary = np.random.normal(0, 1, depth) + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + return (real + 1j * imaginary).astype({{complex}}) # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: + """Normalization of a vector.""" + {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = (mtx / val) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + return retval # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def project(mtx1: npt.NDArray[{{primary}}]) -> npt.NDArray[{{primary}}]: + """Build a projection from a vector.""" + {% if debug_dtype_checks %}assert_dtype(mtx1, {{primary}}){% endif %} + retval = np.outer(mtx1, np.conj(mtx1)) + {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} + return retval # type: ignore + + +{% if not is_debug %}@jit(forceobj=True, cache=True) +{% endif %}def expand_d_fs( + value: npt.NDArray[{{primary}}], + depth: int, + quantity: int, + idx: int, +) -> npt.NDArray[{{primary}}]: + """Expand an operator to n quDits.""" + {% if debug_dtype_checks %}assert_dtype(value, {{primary}}){% endif %} + depth_1 = int(depth**idx) + identity_1 = np.identity(depth_1).astype({{primary}}, copy=False) + + depth_2 = int(depth ** (quantity - idx - 1)) + identity_2 = np.identity(depth_2).astype({{primary}}, copy=False) + + kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) + + retval = kronecker_2.astype({{primary}}, copy=False) + {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} + return retval # type: ignore + + +{% if not is_debug %}@jit(forceobj=True, cache=True) +{% endif %}def kronecker( + mtx: npt.NDArray[{{primary}}], mtx1: npt.NDArray[{{primary}}] +) -> npt.NDArray[{{primary}}]: + """Kronecker Product.""" + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype({{primary}}, copy=False) + {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} + return retval # type: ignore + + +{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def rotate( + rho2: npt.NDArray[{{primary}}], unitary: npt.NDArray[{{primary}}] +) -> npt.NDArray[{{primary}}]: + """Sandwich an operator with a unitary.""" + {% if debug_dtype_checks %}assert_dtype(rho2, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(unitary, {{primary}}){% endif %} + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + {% if debug_dtype_checks %}assert_dtype(rho2a, {{primary}}){% endif %} + return rho2a # type: ignore From ce0b3b9929ac182079ae804216c769859339d78f Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 27 Feb 2023 21:34:20 +0100 Subject: [PATCH 039/227] Fix implementation of numpy backend, add debug utilities to template --- 5qubits/cssfproject.json | 29 -- cssfinder/algorithm/backend/__init__.py | 12 +- .../backend/numpy/_impl/_complex128.py | 41 ++- .../backend/numpy/_impl/_complex64.py | 35 +- cssfinder/algorithm/backend/numpy/base.py | 5 +- cssfinder/algorithm/backend/numpy/impl.py | 3 +- cssfinder/algorithm/gilbert.py | 9 +- cssfinder/cli.py | 2 +- cssfinder/io/asset_loader.py | 6 +- cssfinder/project/cssfproject.py | 10 +- cssfinder/report.py | 1 + poetry.lock | 302 +++++++++--------- pyproject.toml | 17 +- scripts/gen_numpy_impl.py | 29 +- scripts/templates/numpy.pyjinja2 | 163 ++++++---- 15 files changed, 363 insertions(+), 301 deletions(-) delete mode 100644 5qubits/cssfproject.json diff --git a/5qubits/cssfproject.json b/5qubits/cssfproject.json deleted file mode 100644 index 9a7c2a6..0000000 --- a/5qubits/cssfproject.json +++ /dev/null @@ -1,29 +0,0 @@ -{ - "version": "1.0.0", - "meta": { - "author": "Example", - "email": "example@example.com", - "name": "5qubits", - "description": "Project description", - "version": "1.0.0" - }, - "resources": { - "initial_state": { - "file": "{project.directory}/5qubits_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": null, - "projection": null - }, - "algorithm": { - "type": "Gilbert", - "mode": "FSnQd", - "backend": "numpy", - "precision": "complex128", - "visibility": 0.1, - "max_epochs": 1000, - "iters_per_epoch": 1000, - "max_corrections": 1000 - } -} diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 53052f7..58dc3e8 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -28,24 +28,18 @@ from typing import Type from cssfinder.algorithm.backend.base import BackendBase -from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 from cssfinder.algorithm.backend.numpy.complex64 import NumPyC64 -from cssfinder.algorithm.backend.numpy.float64 import NumPyF64 -from cssfinder.algorithm.backend.numpy.float32 import NumPyF32 +from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 from cssfinder.project.cssfproject import Backend, Precision def new(backend: Backend, precision: Precision) -> Type[BackendBase]: """Select one of the backends with fixed precision.""" if backend == Backend.NumPy: - if precision == Precision.Complex128: + if precision == Precision.DOUBLE: return NumPyC128 - if precision == Precision.Complex64: + if precision == Precision.FULL: return NumPyC64 - if precision == Precision.Float64: - return NumPyF64 - if precision == Precision.Float32: - return NumPyF32 raise UnsupportedBackendError( f"Backend {backend.name!r} with precision {precision.name!r} not supported." diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 5fa6b73..f5e896d 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -17,16 +17,23 @@ # HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - +# +# ------------------------------------------------------------------------------------ # +# # +# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # +# # +# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # +# use `poe gen-numpy-impl` to generate python files. # +# # +# ------------------------------------------------------------------------------------ # +# """This module contains implementation of backend operations in numpy. Spec ---- -- Primary precision: np.complex128 - Floating precision: np.float64 - Complex precision: np.complex128 - """ from __future__ import annotations @@ -50,11 +57,13 @@ def optimize_d_fs( # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) product_rot2_3 = product(rotated_2, rho3) @@ -66,6 +75,7 @@ def optimize_d_fs( while (new_product_2_3 := product_rot2_3) > product_2_3: product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) return rotated_2.astype(np.complex128, copy=False) # type: ignore @@ -77,7 +87,9 @@ def product( ) -> np.float64: """Calculate scalar product of two matrices.""" - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + retval = np.trace(np.dot(matrix1, matrix2)).real + + return retval # type: ignore @jit(forceobj=True, cache=True) @@ -86,6 +98,7 @@ def random_unitary_d_fs( ) -> npt.NDArray[np.complex128]: """N quDits.""" value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) return mtx # type: ignore @@ -93,13 +106,14 @@ def random_unitary_d_fs( _REAL = np.cos(0.01 * np.pi) _IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = _REAL + _IMAG - 1 +_VALUE = (_REAL + _IMAG - 1).astype(np.complex128) @jit(nopython=True, nogil=True, cache=True) def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth) + + identity_mtx = np.identity(depth).astype(np.float64) rand_mul = np.multiply(_VALUE, random_mtx) @@ -137,7 +151,9 @@ def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: """Normalization of a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val return retval # type: ignore @@ -162,17 +178,16 @@ def expand_d_fs( """Expand an operator to n quDits.""" depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype(np.complex128, copy=False) + identity_1 = np.identity(depth_1, dtype=np.complex128) depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype(np.complex128, copy=False) + identity_2 = np.identity(depth_2, dtype=np.complex128) kronecker_1 = kronecker(identity_1, value) - kronecker_2 = kronecker(kronecker_1, identity_2) - retval = kronecker_2.astype(np.complex128, copy=False) + kronecker_2 = kronecker(kronecker_1, identity_2) - return retval # type: ignore + return kronecker_2 # type: ignore @jit(forceobj=True, cache=True) @@ -180,11 +195,14 @@ def kronecker( mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: """Kronecker Product.""" + ddd1 = len(mtx) ddd2 = len(mtx1) output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) @@ -199,6 +217,7 @@ def rotate( """Sandwich an operator with a unitary.""" rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 493d145..2ae3501 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -17,16 +17,23 @@ # HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - +# +# ------------------------------------------------------------------------------------ # +# # +# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # +# # +# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # +# use `poe gen-numpy-impl` to generate python files. # +# # +# ------------------------------------------------------------------------------------ # +# """This module contains implementation of backend operations in numpy. Spec ---- -- Primary precision: np.complex64 - Floating precision: np.float32 - Complex precision: np.complex64 - """ from __future__ import annotations @@ -77,7 +84,9 @@ def product( ) -> np.float32: """Calculate scalar product of two matrices.""" - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + retval = np.trace(np.dot(matrix1, matrix2)).real + + return retval # type: ignore @jit(forceobj=True, cache=True) @@ -93,13 +102,14 @@ def random_unitary_d_fs( _REAL = np.cos(0.01 * np.pi) _IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = _REAL + _IMAG - 1 +_VALUE = (_REAL + _IMAG - 1).astype(np.complex64) @jit(nopython=True, nogil=True, cache=True) def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex64]: random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth) + + identity_mtx = np.identity(depth).astype(np.float32) rand_mul = np.multiply(_VALUE, random_mtx) @@ -137,7 +147,9 @@ def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: """Normalization of a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) + val = np.sqrt(np.real(mtx2)) + retval = mtx / val return retval # type: ignore @@ -162,17 +174,16 @@ def expand_d_fs( """Expand an operator to n quDits.""" depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype(np.complex64, copy=False) + identity_1 = np.identity(depth_1, dtype=np.complex64) depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype(np.complex64, copy=False) + identity_2 = np.identity(depth_2, dtype=np.complex64) kronecker_1 = kronecker(identity_1, value) + kronecker_2 = kronecker(kronecker_1, identity_2) - retval = kronecker_2.astype(np.complex64, copy=False) - - return retval # type: ignore + return kronecker_2 # type: ignore @jit(forceobj=True, cache=True) @@ -184,7 +195,9 @@ def kronecker( ddd2 = len(mtx1) output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + out_mtx = np.swapaxes(dot_0_1, 1, 2) retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 920e2bc..23c7ca9 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -23,11 +23,11 @@ specific precision.""" from __future__ import annotations + from typing import Generic, Type, TypeVar, cast import numpy as np import numpy.typing as npt - from numba import jit from cssfinder.algorithm.backend.base import BackendBase @@ -35,8 +35,7 @@ from cssfinder.io.asset_loader import State from cssfinder.project.cssfproject import AlgoMode - -PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64, np.float64, np.float32) +PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index 1ba2743..08c6f42 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -23,13 +23,14 @@ backends.""" from __future__ import annotations + from typing import Generic, TypeVar import numpy as np import numpy.typing as npt from typing_extensions import Protocol -PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64, np.float64, np.float32) +PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index b25f769..84846f0 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -24,6 +24,7 @@ from __future__ import annotations import logging +from time import perf_counter from typing import Optional import numpy as np @@ -58,6 +59,7 @@ def __init__( def run(self, epochs: int, iterations: int, max_corrections: int) -> None: """Run epochs of iterations each, or up to max_corrections found.""" + start = perf_counter() total_iterations = epochs * iterations for epoch_index in range(epochs): @@ -67,7 +69,9 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: epochs, ((epoch_index + 1) / epochs) * 100, self.backend.corrections_count, - self.backend.corrections[-1][2] if self.backend.corrections_count > 0 else None + self.backend.corrections[-1][2] + if self.backend.corrections_count > 0 + else None, ) # Run N iterations of algorithm without checking stop conditions. self.backend.run_epoch(iterations, epoch_index) @@ -90,6 +94,9 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: self._state = self.backend.state self._corrections = self.backend.corrections + end = perf_counter() + logging.info("Elapsed time: %r.", end - start) + @property def state(self) -> npt.NDArray[np.complex128]: """Returns correction from saturated algorithm.""" diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 4937a86..3fd3434 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -25,7 +25,7 @@ import logging from pathlib import Path -from typing import Optional, cast +from typing import Optional import click import pendulum diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index 4eab6e8..ec26bfa 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -80,10 +80,8 @@ def load_initial_state(self, force_squash: bool = False) -> State: if old_quantity is not None: logging.warning( - ( - "State quantity (%r) was ignored, as depth is None, " - + "quantity of %r was deduced." - ), + "State quantity (%r) was ignored, as depth is None, quantity of %r \ + was deduced.", old_quantity, quantity, ) diff --git a/cssfinder/project/cssfproject.py b/cssfinder/project/cssfproject.py index 7e245b8..2f591f9 100644 --- a/cssfinder/project/cssfproject.py +++ b/cssfinder/project/cssfproject.py @@ -263,16 +263,10 @@ class Precision(_CIEnum): # pylint: disable=invalid-name - Float64 = "Float64" - """64bit floating point without complex values.""" - - Float32 = "Float32" - """32bit floating point without complex values.""" - - Complex128 = "Complex128" + DOUBLE = "double" """64 bit floating point real part with 64 bit floating point complex value.""" - Complex64 = "Complex64" + FULL = "full" """32 bit floating point real part with 32 bit floating point complex value.""" # pylint: enable=invalid-name diff --git a/cssfinder/report.py b/cssfinder/report.py index 7c9763e..1982e95 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -18,5 +18,6 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. +"""Utilities for runtime report creation.""" from __future__ import annotations diff --git a/poetry.lock b/poetry.lock index cd49864..fe13fb9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -16,7 +16,7 @@ files = [ name = "astroid" version = "2.14.2" 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"zipp" -version = "3.14.0" +version = "3.15.0" description = "Backport of pathlib-compatible object wrapper for zip files" category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "zipp-3.14.0-py3-none-any.whl", hash = "sha256:188834565033387710d046e3fe96acfc9b5e86cbca7f39ff69cf21a4128198b7"}, - {file = "zipp-3.14.0.tar.gz", hash = "sha256:9e5421e176ef5ab4c0ad896624e87a7b2f07aca746c9b2aa305952800cb8eecb"}, + {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"}, + {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"}, ] [package.extras] docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] +testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "676a52eb731e03fefbeda74867e59ec14d92a4d4be719632626a8871f0ab99b4" +content-hash = "1f9ed39154401a6c68d46fc600d1448fbf28ecbade65221026c51d30a70b6a75" diff --git a/pyproject.toml b/pyproject.toml index 427e56a..4dd77f5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,11 +16,10 @@ numpy = "^1.23.0" numba = "^0.56.4" pendulum = "^2.1.2" scipy = "^1.9.3" -pydantic = "^1.10.5" -packaging = "^23.0" -email-validator = "^1.3.1" +pydantic = { extras = ["email"], version = "^1.10.5" } typing-extensions = "^4.5.0" rich = "^13.3.1" +pylint = "^2.16.2" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" @@ -73,7 +72,7 @@ line_length = 88 [tool.black] # ANCHOR: tool.black # https://black.readthedocs.io/en/stable/usage_and_configuration/the_basics.html#configuration-format line-length = 88 -target-version = ['py39'] +target-version = ['py38', 'py39', 'py310', 'py311'] extend-exclude = "(external)" [tool.docformatter] @@ -88,11 +87,11 @@ blank = true # https://mypy.readthedocs.io/en/stable/command_line.html # # https://mypy.readthedocs.io/en/stable/cheat_sheet_py3.html # # ---------------------------------------------------------------------------- # -python_version = "3.9" +python_version = "3.8" # A regular expression that matches file names, directory names and paths which # mypy should ignore while recursively discovering files to check. Use forward #slashes (/) as directory separators on all platforms. -exclude = ["external", ".tox"] +exclude = ["external", ".tox", ".venv", ".vscode"] # ---------------------------------------------------------------------------- # # Import discovery # # ---------------------------------------------------------------------------- # @@ -223,7 +222,7 @@ show_absolute_path = true # A comma-separated list of package or module names from where C extensions may # be loaded. Extensions are loading into the active Python interpreter and may # run arbitrary code. -extension-pkg-allow-list = ["pydantic", "black"] +extension-pkg-allow-list = ["pydantic"] # A comma-separated list of package or module names from where C extensions may # be loaded. Extensions are loading into the active Python interpreter and may # run arbitrary code. (This is an alternative name to extension-pkg-allow-list @@ -250,7 +249,7 @@ ignore-patterns = ["^\\.#"] # for modules/projects where namespaces are manipulated during runtime and thus # existing member attributes cannot be deduced by static analysis). It supports # qualified module names, as well as Unix pattern matching. -# ignored-modules = +ignored-modules = ["black"] # Python code to execute, usually for sys.path manipulation such as # pygtk.require(). # init-hook = @@ -417,7 +416,7 @@ min-public-methods = 0 [tool.pylint.exceptions] # ANCHOR: tool.pylint.exceptions # Exceptions that will emit a warning when caught. -overgeneral-exceptions = ["BaseException", "Exception"] +overgeneral-exceptions = ["builtins.BaseException", "builtins.Exception"] [tool.pylint.format] # ANCHOR: tool.pylint.format # Expected format of line ending, e.g. empty (any line ending), LF or CRLF. diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py index f571554..220670f 100644 --- a/scripts/gen_numpy_impl.py +++ b/scripts/gen_numpy_impl.py @@ -1,12 +1,14 @@ """Script for generating numpy precision backends from template.""" +from __future__ import annotations + import logging from pathlib import Path -import click -import jinja2 + import black import black.mode - +import click +import jinja2 TEMPLATES_DIR = Path(__file__).parent / "templates" DEFAULT_DEST = Path(__file__).parent.parent / "cssfinder/algorithm/backend/numpy/_impl" @@ -14,31 +16,30 @@ @click.command() @click.option("--dest", default=DEFAULT_DEST, type=Path) -@click.option("-d", "--debug", is_flag=True, default=False) +@click.option("--disable-jit", is_flag=True, default=False) @click.option("--debug-dtype-checks", is_flag=True, default=False) -def main(dest: Path, debug: bool, debug_dtype_checks: bool) -> None: +def main(dest: Path, disable_jit: bool, debug_dtype_checks: bool) -> None: """Generate numpy precision backends from template.""" + logging.warning("Option --disable-jit %r", disable_jit) + logging.warning("Option --debug-dtype-checks %r", debug_dtype_checks) + env = jinja2.Environment( loader=jinja2.FileSystemLoader(TEMPLATES_DIR.as_posix()), autoescape=jinja2.select_autoescape(), ) template = env.get_template("numpy.pyjinja2") - for name, primary, floating, complex_ in [ - ("_complex128.py", "np.complex128", "np.float64", "np.complex128"), - ("_complex64.py", "np.complex64", "np.float32", "np.complex64"), - ("_float64.py", "np.float64", "np.float64", "np.complex128"), - ("_float32.py", "np.float32", "np.float32", "np.complex64"), + for name, floating, complex_ in [ + ("_complex128.py", "np.float64", "np.complex128"), + ("_complex64.py", "np.float32", "np.complex64"), ]: - logging.warning("Rendering %r %r %r %r", name, primary, floating, complex_) + logging.warning("Rendering %r %r %r", name, floating, complex_) source = template.render( - primary=primary, floating=floating, complex=complex_, - is_debug=debug, + disable_jit=disable_jit, debug_dtype_checks=debug_dtype_checks, - is_floating=("float" in primary), ) source = black.format_str(source, mode=black.mode.Mode()) (dest / name).write_text(source, "utf-8") diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index 9a89770..ff926e9 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -17,13 +17,21 @@ # HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - +# +# ------------------------------------------------------------------------------------ # +# # +# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # +# # +# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # +# use `poe gen-numpy-impl` to generate python files. # +# # +# ------------------------------------------------------------------------------------ # +# """This module contains implementation of backend operations in numpy. Spec ---- -- Primary precision: {{primary}} - Floating precision: {{floating}} - Complex precision: {{complex}} @@ -42,104 +50,125 @@ from typing import Any def assert_dtype(ob: Any, dtype: Any) -> None: if ob.dtype != dtype: - raise RuntimeError(ob.dtype) + raise AssertionError(ob.dtype) {% endif %} -{% if not is_debug %}@jit(forceobj=True) +{% if not disable_jit %}@jit(forceobj=True) {% endif %}def optimize_d_fs( - rho2: npt.NDArray[{{primary}}], - rho3: npt.NDArray[{{primary}}], + rho2: npt.NDArray[{{complex}}], + rho3: npt.NDArray[{{complex}}], depth: int, quantity: int, epochs: int, -) -> npt.NDArray[{{primary}}]: +) -> npt.NDArray[{{complex}}]: """Optimize implementation for FSnQd mode.""" + {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(rho3, {{complex}}){% endif %} + product_2_3 = product(rho2, rho3) # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) + {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} + rotated_2 = rotate(rho2, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) + {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} + rotated_2 = rotate(rho2, unitary) + {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} product_rot2_3 = product(rotated_2, rho3) if product_2_3 > product_rot2_3: unitary = unitary.conj().T rotated_2 = rotate(rho2, unitary) + {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} while (new_product_2_3 := product_rot2_3) > product_2_3: product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) + {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} + product_rot2_3 = product(rotated_2, rho3) - return rotated_2.astype({{primary}}, copy=False) # type: ignore + return rotated_2.astype({{complex}}, copy=False) # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def product( - matrix1: npt.NDArray[{{primary}}], matrix2: npt.NDArray[{{primary}}] + matrix1: npt.NDArray[{{complex}}], matrix2: npt.NDArray[{{complex}}] ) -> {{floating}}: """Calculate scalar product of two matrices.""" - {% if debug_dtype_checks %}assert_dtype(matrix1, {{primary}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(matrix2, {{primary}}){% endif %} - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore + {% if debug_dtype_checks %}assert_dtype(matrix1, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(matrix2, {{complex}}){% endif %} + + retval = np.trace(np.dot(matrix1, matrix2)).real + {% if debug_dtype_checks %}assert_dtype(retval, {{floating}}){% endif %} + + return retval # type: ignore -{% if not is_debug %}@jit(forceobj=True, cache=True) +{% if not disable_jit %}@jit(forceobj=True, cache=True) {% endif %}def random_unitary_d_fs( depth: int, quantity: int, idx: int -) -> npt.NDArray[{{primary}}]: +) -> npt.NDArray[{{complex}}]: """N quDits.""" value = _random_unitary_d_fs_val(depth) + {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} + mtx = expand_d_fs(value, depth, quantity, idx) - {% if debug_dtype_checks %}assert_dtype(mtx, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + return mtx # type: ignore _REAL = np.cos(0.01 * np.pi) _IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = _REAL + _IMAG - 1 +_VALUE = (_REAL + _IMAG - 1).astype({{complex}}) -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[{{primary}}]: +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[{{complex}}]: random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth) - {% if debug_dtype_checks %}assert_dtype(identity_mtx, np.float64){% endif %} + {% if debug_dtype_checks %}assert_dtype(random_mtx, {{complex}}){% endif %} + + identity_mtx = np.identity(depth).astype({{floating}}) + {% if debug_dtype_checks %}assert_dtype(identity_mtx, {{floating}}){% endif %} rand_mul = np.multiply(_VALUE, random_mtx) - {% if is_floating %}rand_mul = rand_mul.real{%endif%} - {% if debug_dtype_checks %}assert_dtype(rand_mul, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(rand_mul, {{complex}}){% endif %} value = np.add(rand_mul, identity_mtx) - {% if debug_dtype_checks %}assert_dtype(value, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} return value # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{primary}}]: +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Random n quDit state.""" vector = normalize(get_random_haar(depth)) {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} for _ in range(quantity - 1): idx_vector = normalize(get_random_haar(depth)) + {% if debug_dtype_checks %}assert_dtype(idx_vector, {{complex}}){% endif %} + vector = np.outer(vector, idx_vector).flatten() {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - {% if is_floating %}vector = vector.real{%endif%} - {% if debug_dtype_checks %}assert_dtype(vector, {{floating}}){% endif %} + vector = project(vector) - {% if debug_dtype_checks %}assert_dtype(vector, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} + return vector # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def get_random_haar(depth: int) -> npt.NDArray[{{complex}}]: """Generate a random vector with Haar measure.""" real = np.random.normal(0, 1, depth) @@ -149,74 +178,98 @@ _VALUE = _REAL + _IMAG - 1 return (real + 1j * imaginary).astype({{complex}}) # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: """Normalization of a vector.""" {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + mtx2 = np.dot(mtx, np.conj(mtx)) + {% if debug_dtype_checks %}assert_dtype(mtx2, {{complex}}){% endif %} + val = np.sqrt(np.real(mtx2)) + {% if debug_dtype_checks %}assert_dtype(val, {{floating}}){% endif %} + retval = (mtx / val) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + return retval # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def project(mtx1: npt.NDArray[{{primary}}]) -> npt.NDArray[{{primary}}]: +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: """Build a projection from a vector.""" - {% if debug_dtype_checks %}assert_dtype(mtx1, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} + retval = np.outer(mtx1, np.conj(mtx1)) - {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + return retval # type: ignore -{% if not is_debug %}@jit(forceobj=True, cache=True) +{% if not disable_jit %}@jit(forceobj=True, cache=True) {% endif %}def expand_d_fs( - value: npt.NDArray[{{primary}}], + value: npt.NDArray[{{complex}}], depth: int, quantity: int, idx: int, -) -> npt.NDArray[{{primary}}]: +) -> npt.NDArray[{{complex}}]: """Expand an operator to n quDits.""" - {% if debug_dtype_checks %}assert_dtype(value, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} + depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype({{primary}}, copy=False) + identity_1 = np.identity(depth_1, dtype={{complex}}) + {% if debug_dtype_checks %}assert_dtype(identity_1, {{complex}}){% endif %} depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype({{primary}}, copy=False) + identity_2 = np.identity(depth_2, dtype={{complex}}) + {% if debug_dtype_checks %}assert_dtype(identity_2, {{complex}}){% endif %} kronecker_1 = kronecker(identity_1, value) + {% if debug_dtype_checks %}assert_dtype(kronecker_1, {{complex}}){% endif %} + kronecker_2 = kronecker(kronecker_1, identity_2) + {% if debug_dtype_checks %}assert_dtype(kronecker_2, {{complex}}){% endif %} - retval = kronecker_2.astype({{primary}}, copy=False) - {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} - return retval # type: ignore + return kronecker_2 # type: ignore -{% if not is_debug %}@jit(forceobj=True, cache=True) +{% if not disable_jit %}@jit(forceobj=True, cache=True) {% endif %}def kronecker( - mtx: npt.NDArray[{{primary}}], mtx1: npt.NDArray[{{primary}}] -) -> npt.NDArray[{{primary}}]: + mtx: npt.NDArray[{{complex}}], mtx1: npt.NDArray[{{complex}}] +) -> npt.NDArray[{{complex}}]: """Kronecker Product.""" + {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} + ddd1 = len(mtx) ddd2 = len(mtx1) output_shape = (ddd1 * ddd2, ddd1 * ddd2) + dot_0_1 = np.tensordot(mtx, mtx1, 0) + {% if debug_dtype_checks %}assert_dtype(dot_0_1, {{complex}}){% endif %} + out_mtx = np.swapaxes(dot_0_1, 1, 2) + {% if debug_dtype_checks %}assert_dtype(out_mtx, {{complex}}){% endif %} + + retval = out_mtx.reshape(output_shape).astype({{complex}}, copy=False) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - retval = out_mtx.reshape(output_shape).astype({{primary}}, copy=False) - {% if debug_dtype_checks %}assert_dtype(retval, {{primary}}){% endif %} return retval # type: ignore -{% if not is_debug %}@jit(nopython=True, nogil=True, cache=True) +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def rotate( - rho2: npt.NDArray[{{primary}}], unitary: npt.NDArray[{{primary}}] -) -> npt.NDArray[{{primary}}]: + rho2: npt.NDArray[{{complex}}], unitary: npt.NDArray[{{complex}}] +) -> npt.NDArray[{{complex}}]: """Sandwich an operator with a unitary.""" - {% if debug_dtype_checks %}assert_dtype(rho2, {{primary}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(unitary, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - {% if debug_dtype_checks %}assert_dtype(rho2a, {{primary}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + return rho2a # type: ignore From f66303dc640db408a7e81a15f18126c80278f0a2 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 28 Feb 2023 00:10:59 +0100 Subject: [PATCH 040/227] Add examples directory --- examples/.gitignore | 1 + examples/5qubits/5qubits_in.mtx | 531 ++++++++++++++++++++++++++++++ examples/5qubits/cssfproject.json | 29 ++ 3 files changed, 561 insertions(+) create mode 100644 examples/.gitignore create mode 100644 examples/5qubits/5qubits_in.mtx create mode 100644 examples/5qubits/cssfproject.json diff --git a/examples/.gitignore b/examples/.gitignore new file mode 100644 index 0000000..a56081e --- /dev/null +++ b/examples/.gitignore @@ -0,0 +1 @@ +**/output diff --git a/examples/5qubits/5qubits_in.mtx b/examples/5qubits/5qubits_in.mtx new file mode 100644 index 0000000..91c5cd9 --- /dev/null +++ b/examples/5qubits/5qubits_in.mtx @@ -0,0 +1,531 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram Language : www.wolfram.com +32 32 +1 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 diff --git a/examples/5qubits/cssfproject.json b/examples/5qubits/cssfproject.json new file mode 100644 index 0000000..c628518 --- /dev/null +++ b/examples/5qubits/cssfproject.json @@ -0,0 +1,29 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "5qubits", + "description": "Project description", + "version": "1.0.0" + }, + "resources": { + "initial_state": { + "file": "{project.directory}/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": null, + "projection": null + }, + "algorithm": { + "type": "Gilbert", + "mode": "FSnQd", + "backend": "numpy", + "precision": "full", + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 20000, + "max_corrections": 1000 + } +} From 9db78dab2a05f3f8a362b141f64cacb77dd07364 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 28 Feb 2023 00:12:14 +0100 Subject: [PATCH 041/227] Remove leftovers of float optimization --- .../algorithm/backend/numpy/_impl/_float32.py | 205 ------------------ .../algorithm/backend/numpy/_impl/_float64.py | 205 ------------------ cssfinder/algorithm/backend/numpy/float32.py | 42 ---- cssfinder/algorithm/backend/numpy/float64.py | 42 ---- 4 files changed, 494 deletions(-) delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/_float32.py delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/_float64.py delete mode 100644 cssfinder/algorithm/backend/numpy/float32.py delete mode 100644 cssfinder/algorithm/backend/numpy/float64.py diff --git a/cssfinder/algorithm/backend/numpy/_impl/_float32.py b/cssfinder/algorithm/backend/numpy/_impl/_float32.py deleted file mode 100644 index 28d3f74..0000000 --- a/cssfinder/algorithm/backend/numpy/_impl/_float32.py +++ /dev/null @@ -1,205 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -"""This module contains implementation of backend operations in numpy. - -Spec ----- - -- Primary precision: np.float32 -- Floating precision: np.float32 -- Complex precision: np.complex64 - -""" - -from __future__ import annotations - -import numpy as np -import numpy.typing as npt -from numba import jit - - -@jit(forceobj=True) -def optimize_d_fs( - rho2: npt.NDArray[np.float32], - rho3: npt.NDArray[np.float32], - depth: int, - quantity: int, - epochs: int, -) -> npt.NDArray[np.float32]: - """Optimize implementation for FSnQd mode.""" - - product_2_3 = product(rho2, rho3) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(depth, quantity, 0) - rotated_2 = rotate(rho2, unitary) - - for idx in range(epochs): - idx_mod = idx % int(quantity) - unitary = random_unitary_d_fs(depth, quantity, idx_mod) - rotated_2 = rotate(rho2, unitary) - - product_rot2_3 = product(rotated_2, rho3) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) - - while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - product_rot2_3 = product(rotated_2, rho3) - - return rotated_2.astype(np.float32, copy=False) # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.float32], matrix2: npt.NDArray[np.float32] -) -> np.float32: - """Calculate scalar product of two matrices.""" - - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore - - -@jit(forceobj=True, cache=True) -def random_unitary_d_fs(depth: int, quantity: int, idx: int) -> npt.NDArray[np.float32]: - """N quDits.""" - value = _random_unitary_d_fs_val(depth) - mtx = expand_d_fs(value, depth, quantity, idx) - - return mtx # type: ignore - - -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = _REAL + _IMAG - 1 - - -@jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.float32]: - random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth) - - rand_mul = np.multiply(_VALUE, random_mtx) - rand_mul = rand_mul.real - - value = np.add(rand_mul, identity_mtx) - - return value # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.float32]: - """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) - - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) - vector = np.outer(vector, idx_vector).flatten() - - vector = vector.real - - vector = project(vector) - - return vector # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int) -> npt.NDArray[np.complex64]: - """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - return (real + 1j * imaginary).astype(np.complex64) # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Normalization of a vector.""" - - mtx2 = np.dot(mtx, np.conj(mtx)) - val = np.sqrt(np.real(mtx2)) - retval = mtx / val - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.float32]) -> npt.NDArray[np.float32]: - """Build a projection from a vector.""" - - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore - - -@jit(forceobj=True, cache=True) -def expand_d_fs( - value: npt.NDArray[np.float32], - depth: int, - quantity: int, - idx: int, -) -> npt.NDArray[np.float32]: - """Expand an operator to n quDits.""" - - depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype(np.float32, copy=False) - - depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype(np.float32, copy=False) - - kronecker_1 = kronecker(identity_1, value) - kronecker_2 = kronecker(kronecker_1, identity_2) - - retval = kronecker_2.astype(np.float32, copy=False) - - return retval # type: ignore - - -@jit(forceobj=True, cache=True) -def kronecker( - mtx: npt.NDArray[np.float32], mtx1: npt.NDArray[np.float32] -) -> npt.NDArray[np.float32]: - """Kronecker Product.""" - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - dot_0_1 = np.tensordot(mtx, mtx1, 0) - out_mtx = np.swapaxes(dot_0_1, 1, 2) - - retval = out_mtx.reshape(output_shape).astype(np.float32, copy=False) - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.float32], unitary: npt.NDArray[np.float32] -) -> npt.NDArray[np.float32]: - """Sandwich an operator with a unitary.""" - - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - - return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/_impl/_float64.py b/cssfinder/algorithm/backend/numpy/_impl/_float64.py deleted file mode 100644 index 9642d98..0000000 --- a/cssfinder/algorithm/backend/numpy/_impl/_float64.py +++ /dev/null @@ -1,205 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -"""This module contains implementation of backend operations in numpy. - -Spec ----- - -- Primary precision: np.float64 -- Floating precision: np.float64 -- Complex precision: np.complex128 - -""" - -from __future__ import annotations - -import numpy as np -import numpy.typing as npt -from numba import jit - - -@jit(forceobj=True) -def optimize_d_fs( - rho2: npt.NDArray[np.float64], - rho3: npt.NDArray[np.float64], - depth: int, - quantity: int, - epochs: int, -) -> npt.NDArray[np.float64]: - """Optimize implementation for FSnQd mode.""" - - product_2_3 = product(rho2, rho3) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(depth, quantity, 0) - rotated_2 = rotate(rho2, unitary) - - for idx in range(epochs): - idx_mod = idx % int(quantity) - unitary = random_unitary_d_fs(depth, quantity, idx_mod) - rotated_2 = rotate(rho2, unitary) - - product_rot2_3 = product(rotated_2, rho3) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) - - while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - product_rot2_3 = product(rotated_2, rho3) - - return rotated_2.astype(np.float64, copy=False) # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.float64], matrix2: npt.NDArray[np.float64] -) -> np.float64: - """Calculate scalar product of two matrices.""" - - return np.trace(np.dot(matrix1, matrix2)).real # type: ignore - - -@jit(forceobj=True, cache=True) -def random_unitary_d_fs(depth: int, quantity: int, idx: int) -> npt.NDArray[np.float64]: - """N quDits.""" - value = _random_unitary_d_fs_val(depth) - mtx = expand_d_fs(value, depth, quantity, idx) - - return mtx # type: ignore - - -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = _REAL + _IMAG - 1 - - -@jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.float64]: - random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth) - - rand_mul = np.multiply(_VALUE, random_mtx) - rand_mul = rand_mul.real - - value = np.add(rand_mul, identity_mtx) - - return value # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.float64]: - """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) - - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) - vector = np.outer(vector, idx_vector).flatten() - - vector = vector.real - - vector = project(vector) - - return vector # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: - """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - return (real + 1j * imaginary).astype(np.complex128) # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Normalization of a vector.""" - - mtx2 = np.dot(mtx, np.conj(mtx)) - val = np.sqrt(np.real(mtx2)) - retval = mtx / val - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.float64]) -> npt.NDArray[np.float64]: - """Build a projection from a vector.""" - - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore - - -@jit(forceobj=True, cache=True) -def expand_d_fs( - value: npt.NDArray[np.float64], - depth: int, - quantity: int, - idx: int, -) -> npt.NDArray[np.float64]: - """Expand an operator to n quDits.""" - - depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1).astype(np.float64, copy=False) - - depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2).astype(np.float64, copy=False) - - kronecker_1 = kronecker(identity_1, value) - kronecker_2 = kronecker(kronecker_1, identity_2) - - retval = kronecker_2.astype(np.float64, copy=False) - - return retval # type: ignore - - -@jit(forceobj=True, cache=True) -def kronecker( - mtx: npt.NDArray[np.float64], mtx1: npt.NDArray[np.float64] -) -> npt.NDArray[np.float64]: - """Kronecker Product.""" - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - dot_0_1 = np.tensordot(mtx, mtx1, 0) - out_mtx = np.swapaxes(dot_0_1, 1, 2) - - retval = out_mtx.reshape(output_shape).astype(np.float64, copy=False) - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.float64], unitary: npt.NDArray[np.float64] -) -> npt.NDArray[np.float64]: - """Sandwich an operator with a unitary.""" - - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - - return rho2a # type: ignore diff --git a/cssfinder/algorithm/backend/numpy/float32.py b/cssfinder/algorithm/backend/numpy/float32.py deleted file mode 100644 index e5159c7..0000000 --- a/cssfinder/algorithm/backend/numpy/float32.py +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Numpy backend with fixed precision of complex 128-bit.""" - -from __future__ import annotations - -from typing import Type, cast - -import numpy as np - -from cssfinder.algorithm.backend.numpy._impl import _float64 -from cssfinder.algorithm.backend.numpy.base import NumPyBase -from cssfinder.algorithm.backend.numpy.impl import Implementation - - -class NumPyF32(NumPyBase[np.float32, np.float32]): - """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" - - impl: Implementation[np.float32, np.float32] = cast( - Implementation[np.float32, np.float32], _float64 - ) - primary_t: Type[np.float32] = np.float32 - secondary_t: Type[np.float32] = np.float32 diff --git a/cssfinder/algorithm/backend/numpy/float64.py b/cssfinder/algorithm/backend/numpy/float64.py deleted file mode 100644 index 38d2b92..0000000 --- a/cssfinder/algorithm/backend/numpy/float64.py +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Numpy backend with fixed precision of complex 128-bit.""" - -from __future__ import annotations - -from typing import Type, cast - -import numpy as np - -from cssfinder.algorithm.backend.numpy._impl import _float64 -from cssfinder.algorithm.backend.numpy.base import NumPyBase -from cssfinder.algorithm.backend.numpy.impl import Implementation - - -class NumPyF64(NumPyBase[np.float64, np.float64]): - """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" - - impl: Implementation[np.float64, np.float64] = cast( - Implementation[np.float64, np.float64], _float64 - ) - primary_t: Type[np.float64] = np.float64 - secondary_t: Type[np.float64] = np.float64 From b8cb17a57b01dbe75a91d1da6086d856f17d2d90 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 28 Feb 2023 00:48:46 +0100 Subject: [PATCH 042/227] Add examples source --- examples/GHZ3/GHZ3_in.mtx | 39 +++++++++ examples/GHZ3/GHZ3_sym_0_0.mtx | 39 +++++++++ examples/GHZ3/GHZ3_sym_0_1.mtx | 39 +++++++++ examples/GHZ3/GHZ3_sym_1_0.mtx | 39 +++++++++ examples/GHZ3/GHZ3_sym_1_1.mtx | 67 ++++++++++++++ examples/GHZ3/GHZ3_sym_1_2.mtx | 31 +++++++ examples/GHZ3/GHZ3_sym_1_3.mtx | 67 ++++++++++++++ examples/GHZ3/GHZ3_sym_1_4.mtx | 39 +++++++++ examples/GHZ3/GHZ3_sym_1_5.mtx | 67 ++++++++++++++ examples/GHZ3/GHZ3_sym_1_6.mtx | 31 +++++++ examples/GHZ3/GHZ3_sym_1_7.mtx | 67 ++++++++++++++ examples/GHZ3/cssfproject.json | 40 +++++++++ examples/GHZ4/GHZ4_in.mtx | 139 ++++++++++++++++++++++++++++++ examples/GHZ4/cssfproject.json | 29 +++++++ examples/future_project_file.json | 47 ++++++++++ examples/proj/cssfproject.json | 29 +++++++ examples/proj/proj_in.mtx | 48 +++++++++++ examples/proj/proj_proj.mtx | 48 +++++++++++ 18 files changed, 905 insertions(+) create mode 100644 examples/GHZ3/GHZ3_in.mtx create mode 100644 examples/GHZ3/GHZ3_sym_0_0.mtx create mode 100644 examples/GHZ3/GHZ3_sym_0_1.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_0.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_1.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_2.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_3.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_4.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_5.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_6.mtx create mode 100644 examples/GHZ3/GHZ3_sym_1_7.mtx create mode 100644 examples/GHZ3/cssfproject.json create mode 100644 examples/GHZ4/GHZ4_in.mtx create mode 100644 examples/GHZ4/cssfproject.json create mode 100644 examples/future_project_file.json create mode 100644 examples/proj/cssfproject.json create mode 100644 examples/proj/proj_in.mtx create mode 100644 examples/proj/proj_proj.mtx diff --git a/examples/GHZ3/GHZ3_in.mtx b/examples/GHZ3/GHZ3_in.mtx new file mode 100644 index 0000000..50e63b5 --- /dev/null +++ b/examples/GHZ3/GHZ3_in.mtx @@ -0,0 +1,39 @@ +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 diff --git a/examples/GHZ3/GHZ3_sym_0_0.mtx b/examples/GHZ3/GHZ3_sym_0_0.mtx new file mode 100644 index 0000000..cbc1275 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_0_0.mtx @@ -0,0 +1,39 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +1 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +1 diff --git a/examples/GHZ3/GHZ3_sym_0_1.mtx b/examples/GHZ3/GHZ3_sym_0_1.mtx new file mode 100644 index 0000000..47a7ef7 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_0_1.mtx @@ -0,0 +1,39 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +1 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +1 diff --git a/examples/GHZ3/GHZ3_sym_1_0.mtx b/examples/GHZ3/GHZ3_sym_1_0.mtx new file mode 100644 index 0000000..9265c85 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_0.mtx @@ -0,0 +1,39 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +1 +0 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +1 +0 +0 +0 +1 +0 +0 +1 +0 +1 diff --git a/examples/GHZ3/GHZ3_sym_1_1.mtx b/examples/GHZ3/GHZ3_sym_1_1.mtx new file mode 100644 index 0000000..e5a6629 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_1.mtx @@ -0,0 +1,67 @@ +%%MatrixMarket matrix array real general +%Created with the Wolfram Language : www.wolfram.com +8 8 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 diff --git a/examples/GHZ3/GHZ3_sym_1_2.mtx b/examples/GHZ3/GHZ3_sym_1_2.mtx new file mode 100644 index 0000000..d2e36e0 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_2.mtx @@ -0,0 +1,31 @@ +%%MatrixMarket matrix array integer skew-symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +0 +0 +0 +0 +0 +0 +1 +0 +0 +0 +0 +-1 +0 +0 +0 +-1 +0 +0 +1 +0 +0 +0 +0 +0 +0 +0 +0 +0 diff --git a/examples/GHZ3/GHZ3_sym_1_3.mtx b/examples/GHZ3/GHZ3_sym_1_3.mtx new file mode 100644 index 0000000..e87be11 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_3.mtx @@ -0,0 +1,67 @@ +%%MatrixMarket matrix array real general +%Created with the Wolfram Language : www.wolfram.com +8 8 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 diff --git a/examples/GHZ3/GHZ3_sym_1_4.mtx b/examples/GHZ3/GHZ3_sym_1_4.mtx new file mode 100644 index 0000000..1cab455 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_4.mtx @@ -0,0 +1,39 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +-1 +0 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +-1 +0 +0 +0 +-1 +0 +0 +-1 +0 +-1 diff --git a/examples/GHZ3/GHZ3_sym_1_5.mtx b/examples/GHZ3/GHZ3_sym_1_5.mtx new file mode 100644 index 0000000..190f28e --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_5.mtx @@ -0,0 +1,67 @@ +%%MatrixMarket matrix array real general +%Created with the Wolfram Language : www.wolfram.com +8 8 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 diff --git a/examples/GHZ3/GHZ3_sym_1_6.mtx b/examples/GHZ3/GHZ3_sym_1_6.mtx new file mode 100644 index 0000000..5cbda56 --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_6.mtx @@ -0,0 +1,31 @@ +%%MatrixMarket matrix array integer skew-symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 +0 +0 +0 +0 +0 +0 +-1 +0 +0 +0 +0 +1 +0 +0 +0 +1 +0 +0 +-1 +0 +0 +0 +0 +0 +0 +0 +0 +0 diff --git a/examples/GHZ3/GHZ3_sym_1_7.mtx b/examples/GHZ3/GHZ3_sym_1_7.mtx new file mode 100644 index 0000000..ada3dfe --- /dev/null +++ b/examples/GHZ3/GHZ3_sym_1_7.mtx @@ -0,0 +1,67 @@ +%%MatrixMarket matrix array real general +%Created with the Wolfram Language : www.wolfram.com +8 8 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + -3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 + 3.5355339059327373E-01 diff --git a/examples/GHZ3/cssfproject.json b/examples/GHZ3/cssfproject.json new file mode 100644 index 0000000..c31a549 --- /dev/null +++ b/examples/GHZ3/cssfproject.json @@ -0,0 +1,40 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "GHZ3", + "description": "Project description", + "version": "1.0.0" + }, + "resources": { + "initial_state": { + "file": "{project.directory}/GHZ3_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": [ + "{project.directory}/GHZ3_sym_0_0.mtx", + "{project.directory}/GHZ3_sym_0_1.mtx", + "{project.directory}/GHZ3_sym_1_0.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx", + "{project.directory}/GHZ3_sym_1_2.mtx", + "{project.directory}/GHZ3_sym_1_3.mtx", + "{project.directory}/GHZ3_sym_1_4.mtx", + "{project.directory}/GHZ3_sym_1_5.mtx", + "{project.directory}/GHZ3_sym_1_6.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx" + ], + "projection": null + }, + "algorithm": { + "type": "Gilbert", + "mode": "G3PaE3qD", + "backend": "numpy", + "precision": "full", + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + } +} diff --git a/examples/GHZ4/GHZ4_in.mtx b/examples/GHZ4/GHZ4_in.mtx new file mode 100644 index 0000000..4794a20 --- /dev/null +++ b/examples/GHZ4/GHZ4_in.mtx @@ -0,0 +1,139 @@ +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +16 16 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + -1.2500000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + -6.2500000000000000E-02 + -6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 6.2500000000000000E-02 + 0.0000000000000000E+00 + 0.0000000000000000E+00 diff --git a/examples/GHZ4/cssfproject.json b/examples/GHZ4/cssfproject.json new file mode 100644 index 0000000..5884161 --- /dev/null +++ b/examples/GHZ4/cssfproject.json @@ -0,0 +1,29 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "5qubits", + "description": "Project description", + "version": "1.0.0" + }, + "resources": { + "initial_state": { + "file": "{project.directory}/GHZ4_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": null, + "projection": null + }, + "algorithm": { + "type": "Gilbert", + "mode": "G4PaE3qD", + "backend": "numpy", + "precision": "full", + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + } +} diff --git a/examples/future_project_file.json b/examples/future_project_file.json new file mode 100644 index 0000000..92b55cf --- /dev/null +++ b/examples/future_project_file.json @@ -0,0 +1,47 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "5qubits", + "description": "Project description", + "version": "1.0.0" + }, + "algorithm": { + "gilbert": { + "profiles": { + "0": { + "config": { + "mode": "FSnQd", + "backend": "numpy", + "precision": "full", + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 20000, + "max_corrections": 1000 + }, + "resources": { + "initial_state": { + "file": "{project.directory}/GHZ3_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": [ + "{project.directory}/GHZ3_sym_0_0.mtx", + "{project.directory}/GHZ3_sym_0_1.mtx", + "{project.directory}/GHZ3_sym_1_0.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx", + "{project.directory}/GHZ3_sym_1_2.mtx", + "{project.directory}/GHZ3_sym_1_3.mtx", + "{project.directory}/GHZ3_sym_1_4.mtx", + "{project.directory}/GHZ3_sym_1_5.mtx", + "{project.directory}/GHZ3_sym_1_6.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx" + ], + "projection": null + } + } + } + } + } +} diff --git a/examples/proj/cssfproject.json b/examples/proj/cssfproject.json new file mode 100644 index 0000000..57e467e --- /dev/null +++ b/examples/proj/cssfproject.json @@ -0,0 +1,29 @@ +{ + "version": "1.0.0", + "meta": { + "author": "Example", + "email": "example@example.com", + "name": "5qubits", + "description": "Project description", + "version": "1.0.0" + }, + "resources": { + "initial_state": { + "file": "{project.directory}/proj_in.mtx", + "depth": null, + "quantity": null + }, + "symmetries": null, + "projection": null + }, + "algorithm": { + "type": "Gilbert", + "mode": "SBiPi", + "backend": "numpy", + "precision": "full", + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + } +} diff --git a/examples/proj/proj_in.mtx b/examples/proj/proj_in.mtx new file mode 100644 index 0000000..11364df --- /dev/null +++ b/examples/proj/proj_in.mtx @@ -0,0 +1,48 @@ +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +9 9 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 1.2500000000000000E-01 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 1.2500000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 1.2500000000000000E-01 + 1.2500000000000000E-01 + 1.2500000000000000E-01 diff --git a/examples/proj/proj_proj.mtx b/examples/proj/proj_proj.mtx new file mode 100644 index 0000000..33785ab --- /dev/null +++ b/examples/proj/proj_proj.mtx @@ -0,0 +1,48 @@ +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +9 9 + 1.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 5.0000000000000000E-01 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 5.0000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 2.5000000000000000E-01 From 1068283c6727471fa669ea2aeab8140b2d701963 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 1 Mar 2023 15:44:46 +0100 Subject: [PATCH 043/227] Change random number generation to uniform distribution based --- .../backend/numpy/_impl/_complex128.py | 22 ++++++++------ .../backend/numpy/_impl/_complex64.py | 30 +++++++++++++------ pyproject.toml | 5 ++-- scripts/gen_numpy_impl.py | 8 ++++- scripts/templates/numpy.pyjinja2 | 28 +++++++++++------ 5 files changed, 62 insertions(+), 31 deletions(-) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index f5e896d..8e4c391 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -125,10 +125,12 @@ def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: @jit(nopython=True, nogil=True, cache=True) def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) + rand_vectors = get_random_haar(depth, quantity) + vector = normalize(rand_vectors[0]) + + for i in range(quantity - 1): + idx_vector = normalize(rand_vectors[i]) - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) vector = np.outer(vector, idx_vector).flatten() vector = project(vector) @@ -137,13 +139,15 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: @jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int) -> npt.NDArray[np.complex128]: +def get_random_haar(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - return (real + 1j * imaginary).astype(np.complex128) # type: ignore + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + return retval # type: ignore @jit(nopython=True, nogil=True, cache=True) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 2ae3501..b69ac53 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -57,11 +57,13 @@ def optimize_d_fs( # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) + rotated_2 = rotate(rho2, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) + rotated_2 = rotate(rho2, unitary) product_rot2_3 = product(rotated_2, rho3) @@ -73,6 +75,7 @@ def optimize_d_fs( while (new_product_2_3 := product_rot2_3) > product_2_3: product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) + product_rot2_3 = product(rotated_2, rho3) return rotated_2.astype(np.complex64, copy=False) # type: ignore @@ -95,6 +98,7 @@ def random_unitary_d_fs( ) -> npt.NDArray[np.complex64]: """N quDits.""" value = _random_unitary_d_fs_val(depth) + mtx = expand_d_fs(value, depth, quantity, idx) return mtx # type: ignore @@ -121,10 +125,12 @@ def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex64]: @jit(nopython=True, nogil=True, cache=True) def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) + rand_vectors = get_random_haar(depth, quantity) + vector = normalize(rand_vectors[0]) + + for i in range(quantity - 1): + idx_vector = normalize(rand_vectors[i]) - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) vector = np.outer(vector, idx_vector).flatten() vector = project(vector) @@ -133,13 +139,17 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: @jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int) -> npt.NDArray[np.complex64]: +def get_random_haar(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - return (real + 1j * imaginary).astype(np.complex64) # type: ignore + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + retval = (retval).astype(np.complex64) + + return retval # type: ignore @jit(nopython=True, nogil=True, cache=True) @@ -191,6 +201,7 @@ def kronecker( mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] ) -> npt.NDArray[np.complex64]: """Kronecker Product.""" + ddd1 = len(mtx) ddd2 = len(mtx1) @@ -212,6 +223,7 @@ def rotate( """Sandwich an operator with a unitary.""" rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot return rho2a # type: ignore diff --git a/pyproject.toml b/pyproject.toml index 4dd77f5..6af2467 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,11 +19,10 @@ scipy = "^1.9.3" pydantic = { extras = ["email"], version = "^1.10.5" } typing-extensions = "^4.5.0" rich = "^13.3.1" -pylint = "^2.16.2" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" -pylint = "^2.15.9" +pylint = "^2.16.2" isort = "^5.11.4" docformatter = { extras = ["tomli"], version = "^1.5.1" } pytest = "^7.2.0" @@ -489,7 +488,7 @@ confidence = [ # --enable=similarities". If you want to run only the classes checker, but have # no Warning level messages displayed, use "--disable=all --enable=classes # --disable=W". -disable = ["logging-too-many-args", "unnecessary-ellipsis"] +disable = ["logging-too-many-args", "unnecessary-ellipsis", "duplicate-code"] # Enable the message, report, category or checker with the given id(s). You can # either give multiple identifier separated by comma (,) or put this option # multiple time (only on the command line, not in the configuration file where it diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py index 220670f..ba44d79 100644 --- a/scripts/gen_numpy_impl.py +++ b/scripts/gen_numpy_impl.py @@ -18,7 +18,10 @@ @click.option("--dest", default=DEFAULT_DEST, type=Path) @click.option("--disable-jit", is_flag=True, default=False) @click.option("--debug-dtype-checks", is_flag=True, default=False) -def main(dest: Path, disable_jit: bool, debug_dtype_checks: bool) -> None: +@click.option("--use-legacy-random", is_flag=True, default=False) +def main( + dest: Path, disable_jit: bool, debug_dtype_checks: bool, use_legacy_random: bool +) -> None: """Generate numpy precision backends from template.""" logging.warning("Option --disable-jit %r", disable_jit) @@ -40,6 +43,9 @@ def main(dest: Path, disable_jit: bool, debug_dtype_checks: bool) -> None: complex=complex_, disable_jit=disable_jit, debug_dtype_checks=debug_dtype_checks, + use_legacy_random=use_legacy_random, + is_64bit="64" in floating, + is_32bit="32" in floating, ) source = black.format_str(source, mode=black.mode.Mode()) (dest / name).write_text(source, "utf-8") diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index ff926e9..ad60868 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -152,11 +152,12 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Random n quDit state.""" - vector = normalize(get_random_haar(depth)) + rand_vectors = get_random_haar(depth, quantity) + vector = normalize(rand_vectors[0]) {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - for _ in range(quantity - 1): - idx_vector = normalize(get_random_haar(depth)) + for i in range(quantity - 1): + idx_vector = normalize(rand_vectors[i]) {% if debug_dtype_checks %}assert_dtype(idx_vector, {{complex}}){% endif %} vector = np.outer(vector, idx_vector).flatten() @@ -169,13 +170,22 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def get_random_haar(depth: int) -> npt.NDArray[{{complex}}]: +{% endif %}def get_random_haar(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Generate a random vector with Haar measure.""" - real = np.random.normal(0, 1, depth) - imaginary = np.random.normal(0, 1, depth) - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - return (real + 1j * imaginary).astype({{complex}}) # type: ignore + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + {% if is_32bit %} + {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} + {# as real * imag results in np.complex128 type. #} + retval = (retval).astype({{complex}}) + {% endif %} + + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) From 6b3d458595380c25c9eb03433e80fd6290f79934 Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 2 Mar 2023 01:10:42 +0100 Subject: [PATCH 044/227] Improve project definition file () capabilities by allowing refs --- cssfinder/algorithm/backend/__init__.py | 4 +- cssfinder/algorithm/backend/base.py | 2 +- cssfinder/algorithm/backend/numpy/base.py | 15 +- cssfinder/algorithm/gilbert.py | 48 ++- cssfinder/api.py | 90 +++++ cssfinder/cli.py | 57 ++-- cssfinder/cssfproject.py | 387 ++++++++++++++++++++++ cssfinder/enums.py | 43 +++ cssfinder/hooks.py | 74 +++++ cssfinder/io/asset_loader.py | 109 +++--- cssfinder/project/__init__.py | 89 ----- cssfinder/project/cssfproject.py | 278 ---------------- examples/5qubits/cssfproject.json | 65 +++- poetry.lock | 34 +- pyproject.toml | 1 + 15 files changed, 782 insertions(+), 514 deletions(-) create mode 100644 cssfinder/api.py create mode 100644 cssfinder/cssfproject.py create mode 100644 cssfinder/enums.py create mode 100644 cssfinder/hooks.py delete mode 100644 cssfinder/project/__init__.py delete mode 100644 cssfinder/project/cssfproject.py diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 58dc3e8..94c595c 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -30,7 +30,7 @@ from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy.complex64 import NumPyC64 from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 -from cssfinder.project.cssfproject import Backend, Precision +from cssfinder.cssfproject import Backend, Precision def new(backend: Backend, precision: Precision) -> Type[BackendBase]: @@ -38,7 +38,7 @@ def new(backend: Backend, precision: Precision) -> Type[BackendBase]: if backend == Backend.NumPy: if precision == Precision.DOUBLE: return NumPyC128 - if precision == Precision.FULL: + if precision == Precision.SINGLE: return NumPyC64 raise UnsupportedBackendError( diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index b1ad986..431ac0e 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -30,8 +30,8 @@ import numpy as np import numpy.typing as npt +from cssfinder.cssfproject import AlgoMode, Backend, Precision from cssfinder.io.asset_loader import State -from cssfinder.project.cssfproject import AlgoMode, Backend, Precision BackendT = TypeVar("BackendT", bound="BackendBase") diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 23c7ca9..ab9426b 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -32,8 +32,8 @@ from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy.impl import Implementation +from cssfinder.cssfproject import AlgoMode from cssfinder.io.asset_loader import State -from cssfinder.project.cssfproject import AlgoMode PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) @@ -140,17 +140,14 @@ def _update_state( aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) aa5: SECONDARY_co = 2 * self.impl.product(self._intermediate, alternative_state) - param: SECONDARY_co = -(-self._aa4 + aa2 + aa5 - 2 * aa3) / ( - 2 * (self._aa6 - aa5 + aa3) - ) + bb2: SECONDARY_co = -self._aa4 + aa2 + aa5 - 2 * aa3 + bb3: SECONDARY_co = self._aa6 - aa5 + aa3 + cc1: SECONDARY_co = -bb2 / (2 * bb3) - if 0 <= param <= 1: - inv_alternative_state: npt.NDArray[PRIMARY] = cast( - npt.NDArray[PRIMARY], ((1 - param) * alternative_state) - ) + if 0 <= cc1 <= 1: self._intermediate = cast( npt.NDArray[PRIMARY], - (param * self._intermediate) + inv_alternative_state, + (cc1 * self._intermediate) + ((1 - cc1) * alternative_state), ) self._visibility_reduced = cast( diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 84846f0..b5b9ce8 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -25,14 +25,14 @@ import logging from time import perf_counter -from typing import Optional +from typing import Callable, Optional import numpy as np import numpy.typing as npt from cssfinder.algorithm import backend as _backend +from cssfinder.cssfproject import AlgoMode, Backend, Precision from cssfinder.io.asset_loader import State -from cssfinder.project.cssfproject import AlgoMode, Backend, Precision class Gilbert: @@ -57,7 +57,15 @@ def __init__( self._state: Optional[npt.NDArray[np.complex128]] = None self._corrections: Optional[list[tuple[int, int, float]]] = None - def run(self, epochs: int, iterations: int, max_corrections: int) -> None: + def run( + self, + epochs: int, + iterations: int, + max_corrections: int, + *, + save_state_hook: Callable[[npt.NDArray[np.complex128]], None], + save_corrections_hook: Callable[[list[tuple[int, int, float]]], None], + ) -> None: """Run epochs of iterations each, or up to max_corrections found.""" start = perf_counter() total_iterations = epochs * iterations @@ -76,6 +84,23 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: # Run N iterations of algorithm without checking stop conditions. self.backend.run_epoch(iterations, epoch_index) + self._state = self.backend.state + self._corrections = self.backend.corrections + + try: + save_state_hook(self._state) + except Exception as exc: + logging.critical("Exception occurred within save_state_hook() call.") + raise SaveStateHookError() from exc + + try: + save_corrections_hook(self._corrections) + except Exception as exc: + logging.critical( + "Exception occurred within save_corrections_hook() call." + ) + raise SaveCorrectionsHookError() from exc + iterations_executed = (epoch_index + 1) * iterations logging.debug( "Executed %r iterations, total %r / %r (%.2f)", @@ -91,9 +116,6 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: ) break - self._state = self.backend.state - self._corrections = self.backend.corrections - end = perf_counter() logging.info("Elapsed time: %r.", end - start) @@ -101,7 +123,7 @@ def run(self, epochs: int, iterations: int, max_corrections: int) -> None: def state(self) -> npt.NDArray[np.complex128]: """Returns correction from saturated algorithm.""" if self._state is None: - raise AlgorithmNotSaturatedError("Run algorithm first to obtain state!") + raise AlgorithmNotSaturatedError("Run algorithm first, to obtain state!") return self._state @property @@ -121,3 +143,15 @@ class AlgorithmError(Exception): class AlgorithmNotSaturatedError(Exception): """Raised when action was performed on which required algorithm to finish execution on instance which was not run.""" + + +class HookError(Exception): + """Base class for hook error wrappers.""" + + +class SaveStateHookError(HookError): + """Wrapper for exceptions raised by save_state_hook.""" + + +class SaveCorrectionsHookError(HookError): + """Wrapper for exceptions raised by save_state_hook.""" diff --git a/cssfinder/api.py b/cssfinder/api.py new file mode 100644 index 0000000..cd2e44a --- /dev/null +++ b/cssfinder/api.py @@ -0,0 +1,90 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains high level API of cssfinder.""" + +from __future__ import annotations + +import logging +from pathlib import Path +from typing import Optional + +from cssfinder.algorithm.gilbert import Gilbert +from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task +from cssfinder.hooks import save_corrections_hook, save_matrix_hook +from cssfinder.io.asset_loader import GilbertAssetLoader + + +def run_project_file( + project_file_path: Path | str, tasks: Optional[list[str]] = None +) -> None: + """Load project and run all tasks.""" + project = CSSFProject.load_project(project_file_path) + logging.info( + "Loaded project %r by %r <%r>.", + project.meta.name, + project.meta.author, + project.meta.email, + ) + run_project(project, tasks) + + +def run_project(project: CSSFProject, tasks: Optional[list[str]] = None) -> None: + """Run all tasks defined in project.""" + project.eval_dynamic() + logging.debug("Running project %r", project.meta.name) + + message = "\n | ".join(project.json(indent=2).split("\n")) + logging.info("%s", "\n | " + message) + + for name, task in project.tasks.items(): + if tasks is None or name in tasks: + run_task(task, project.output / name) + + +def run_task(task: Task, task_output_dir: Path) -> None: + """Run task until completed.""" + if task.gilbert: + run_gilbert(task.gilbert, task_output_dir) + + +def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: + """Run Gilbert algorithm part of task.""" + asset_loader = GilbertAssetLoader() + assets = asset_loader.load_assets(config) + + task_output_dir.mkdir(0o764, parents=True, exist_ok=True) + + algorithm = Gilbert( + assets.state, + mode=config.mode, + backend=config.backend.name, + precision=config.backend.precision, + visibility=config.runtime.visibility, + ) + algorithm.run( + epochs=config.runtime.max_epochs, + iterations=config.runtime.iters_per_epoch, + max_corrections=config.runtime.max_corrections, + save_state_hook=save_matrix_hook(task_output_dir / "state.mtx"), + save_corrections_hook=save_corrections_hook( + task_output_dir / "corrections.json" + ), + ) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 3fd3434..4a9336c 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -31,14 +31,14 @@ import pendulum import cssfinder -from cssfinder.algorithm.gilbert import Gilbert -from cssfinder.io.asset_loader import AssetLoader -from cssfinder.log import configure_logger -from cssfinder.project import ( +from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError +from cssfinder.api import run_project_file +from cssfinder.cssfproject import ( InvalidCSSFProjectContent, MalformedProjectFileError, - load_project_from, + ProjectFileNotFound, ) +from cssfinder.log import configure_logger @click.group(invoke_without_command=True, no_args_is_help=True) @@ -72,20 +72,18 @@ def main(verbose: int) -> None: @main.command("project") @click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) -@click.option("--force-squash", is_flag=True, default=False) -def _project(path: str, force_squash: bool) -> None: +@click.option("--tasks", "-t", multiple=True) +def _project(path: str, tasks: Optional[list[str]]) -> None: """Use project file to determine runtime configuration.""" + if not tasks: + tasks = None + try: - project = load_project_from(path) - logging.info( - "Loaded project %r by %r <%r>.", - project.meta.name, - project.meta.author, - project.meta.email, - ) - except FileNotFoundError as exc: - logging.critical("Project file not found.") + run_project_file(path, tasks) + + except ProjectFileNotFound as exc: + logging.critical("Project file not found. %s", exc.args[0]) raise SystemExit(300_000) from exc except MalformedProjectFileError as exc: @@ -99,26 +97,13 @@ def _project(path: str, force_squash: bool) -> None: logging.critical("Fix it and try again.") raise SystemExit(302_000) from exc - project.info_display() - - asset_loader = AssetLoader(project) - state = asset_loader.load_initial_state(force_squash) - - algorithm = Gilbert( - state, - mode=project.algorithm.mode, - backend=project.algorithm.backend, - precision=project.algorithm.precision, - visibility=project.algorithm.visibility, - ) - algorithm.run( - epochs=project.algorithm.max_epochs, - iterations=project.algorithm.iters_per_epoch, - max_corrections=project.algorithm.max_corrections, - ) - - asset_loader.save_output_state(algorithm.state) - asset_loader.save_output_corrections(algorithm.corrections) + except SaveStateHookError as exc: + logging.exception(exc) + raise SystemExit(303_000) from exc + + except SaveCorrectionsHookError as exc: + logging.exception(exc) + raise SystemExit(303_000) from exc raise SystemExit(0) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py new file mode 100644 index 0000000..06ec033 --- /dev/null +++ b/cssfinder/cssfproject.py @@ -0,0 +1,387 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""CSSFinder uses its own project format allowing for file based customization of +parameters used by gilbert algorithm. + +This file contains implementation of project configuration in 1.0.0 version. +""" + + +from __future__ import annotations + +import logging +from pathlib import Path +from typing import TYPE_CHECKING, Any, Iterable, Optional + +import jsonref +from pydantic import BaseModel, ConstrainedStr, EmailStr, Extra, Field, validator + +from cssfinder.enums import CaseInsensitiveEnum + +if TYPE_CHECKING: + from typing_extensions import Self + + +class CSSFProject(BaseModel): + """CSSFProject file specification.""" + + meta: Meta + """Project meta information like name and author.""" + + tasks: dict[str, Task] + """List of tasks within project which can be executed.""" + + _file: Optional[Path] = None + """Path to loaded project file.""" + + _is_evaluated: bool = False + + class Config: + validate_assignment = True + extra = Extra.ignore + underscore_attrs_are_private = True + + @validator("tasks", pre=True, always=True) + @classmethod + def _validate_tasks( + cls, value: Iterable[dict[str, Any]] | dict[str, dict[str, Any]] + ) -> dict[str, dict[str, Any]]: + if isinstance(value, dict): + assert all(isinstance(v, dict) for v in value.values()) + return {str(k): dict(v) for k, v in value.items()} + + return {str(i): t for i, t in enumerate(value)} + + def eval_dynamic(self) -> None: + """Evaluate dynamic path expressions.""" + for task_name, task in self.tasks.items(): + task.eval_dynamic(self, task_name, task) + self._is_evaluated = True + + def set_file_path(self, file: Path) -> None: + """Set `cssfproject.json` file path.""" + self._file = file.expanduser().resolve() + + @property + def file(self) -> Path: + """Path to `cssfproject.json` file.""" + if self._file is None: + return Path.cwd() / "cssfproject.json" + return self._file + + @property + def directory(self) -> Path: + """Path to directory containing `cssfproject.json` file.""" + if self._file is None: + return Path.cwd() + return self._file.parent + + @property + def output(self) -> Path: + """Path to output directory for this project.""" + directory = self.directory / "output" + directory.mkdir(0o764, True, True) + return directory + + @classmethod + def load_project(cls, file_or_directory: str | Path) -> Self: + """Load CSSFinder project in at least 1.0.0 version. + + Parameters + ---------- + file_or_directory : str | Path + Either project file (cssfproject.json) or directory containing project file. + + Returns + ------- + CSSFProject + Project information container. + + Raises + ------ + InvalidCSSFProjectContent + Raised when project file content is not a dictionary. + MalformedProjectFileError + When content of project file is not valid json. + """ + + # Unify path type to Path + file_or_directory = Path(file_or_directory).expanduser().resolve() + + # When points to directory, dir must contain cssfproject.json file + if file_or_directory.is_dir(): + file_or_directory /= "cssfproject.json" + file_path = file_or_directory + del file_or_directory + + else: + file_path = file_or_directory + del file_or_directory + + logging.debug("Resolved project path to %r", file_path.as_posix()) + try: + content = file_path.read_text(encoding="utf-8") + except FileNotFoundError as exc: + raise ProjectFileNotFound( + f"Make sure you path is correct: {file_path!r}" + ) from exc + + try: + content = jsonref.loads(content) + except jsonref.JsonRefError as exc: + raise MalformedProjectFileError() from exc + + if not isinstance(content, dict): + logging.critical("Content of cssfproject.json file is not a dictionary.") + raise InvalidCSSFProjectContent(content) + + project = cls(**content) + project.set_file_path(file_path) + + return project + + +class InvalidCSSFProjectContent(ValueError): + """Raised by load_from() when file content is not a dictionary.""" + + +class MalformedProjectFileError(ValueError): + """Rased when project file content can't be correctly decoded.""" + + +class ProjectFileNotFound(FileNotFoundError): + """Raised when project file can't be found in expected place.""" + + +class Meta(BaseModel): + """Project meta information.""" + + author: str + """Author full name.""" + + email: EmailStr + """Author email address.""" + + name: str + """Name of the project.""" + + description: str + """Description of the project.""" + + version: SemVerStr + """Version of the project.""" + + +class SemVerStr(ConstrainedStr): + """Semantic versioning string regex, see https://semver.org/""" + + regex = ( + r"^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-]" + + r"[0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(" + + r"[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$" + ) + + +class Task(BaseModel): + """This represents algorithm task.""" + + gilbert: Optional[GilbertCfg] = Field(default=None) + """Configuration of gilbert algorithm.""" + + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: + """Evaluate dynamic path expressions.""" + if self.gilbert is not None: + self.gilbert.eval_dynamic(project, task_name, task) + + +class GilbertCfg(BaseModel): + """Gilbert algorithm configuration container class.""" + + mode: AlgoMode + """Algorithm mode to use.""" + + backend: BackendCfg + """Configuration of backend which will be used for execution.""" + + state: State | str | Path + """Path to file containing initial state matrix.""" + + runtime: RuntimeCfg + """Configuration of runtime limits and parameters influencing algorithm run time.""" + + resources: Resources + """Additional resources which may be used by algorithm.""" + + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: + """Evaluate dynamic path expressions.""" + + if isinstance(self.state, str): + self.state = State(file=self.state) + + elif isinstance(self.state, Path): + self.state = State(file=self.state.expanduser().resolve().as_posix()) + + self.state.eval_dynamic(project, task_name, task) + self.resources.eval_dynamic(project, task_name, task) + + def get_state(self) -> State: + """Return initial state information.""" + assert isinstance(self.state, State) + return self.state + + +class AlgoMode(CaseInsensitiveEnum): + """Mode of algorithm.""" + + # pylint: disable=invalid-name + + FSnQd = "FSnQd" + """Full separability of n-quDit state.""" + + SBiPa = "SBiPi" + """Separability of a bipartite state.""" + + G3PaE3qD = "G3PaE3qD" + """Genuine 3-partite entanglement of a 3-quDit state.""" + + G4PaE3qD = "G4PaE3qD" + """Genuine 4-partite entanglement of a 3-quDit state.""" + + # pylint: enable=invalid-name + + +class BackendCfg(BaseModel): + """Container class grouping configuration of backend used by Gilbert algorithm.""" + + name: Backend + """Name of backend to use.""" + + precision: Precision + + +class Backend(CaseInsensitiveEnum): + """Backend to use for calculations.""" + + # pylint: disable=invalid-name + + NumPy = "NumPy" + + # pylint: enable=invalid-name + + +class Precision(CaseInsensitiveEnum): + """Precision of calculations performed.""" + + # pylint: disable=invalid-name + + DOUBLE = "double" + """64 bit floating point real part with 64 bit floating point complex value.""" + + SINGLE = "single" + """32 bit floating point real part with 32 bit floating point complex value.""" + + # pylint: enable=invalid-name + + +class State(BaseModel): + """State configuration.""" + + file: str + """Path to file containing state matrix.""" + + depth: Optional[int] = Field(default=None) + """Depth of system, ie. + + number of dimensions in qu(D)it. (d) + """ + + quantity: Optional[int] = Field(default=None) + """Quantity of systems. + + ie. number of qu(D)its in state. (n) + """ + + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: + """Evaluate dynamic path expressions.""" + self.file = self.file.format(project=project, task_name=task_name, task=task) + + +class RuntimeCfg(BaseModel): + """Configuration of runtime limits and parameters influencing algorithm run time.""" + + visibility: float = Field(ge=0.0, le=1.0) + """Visibility against white noise. + + Between 0 and 1. + """ + + max_epochs: int = Field(ge=1, le=1_000_000_000) + """Maximal number of algorithm epochs to perform. + + If other interruption condition is met before the number of epochs, algorithm wont + execute the rest of epochs. + """ + + iters_per_epoch: int = Field(ge=1, le=1_000_000_000) + """Number of iterations per epochs. + + Between iterations no checks are performed, which may speed up calculations. However + intermediate state of systems are not saved anywhere. + """ + + max_corrections: int + """Maximal number of corrections to collect. + + Use -1 to disable this limit. + """ + + +class Resources(BaseModel): + """Project resources.""" + + symmetries: Optional[list[str]] = Field(default=None) + """List of paths to files containing symmetry matrices.""" + + projection: Optional[str] = Field(default=None) + """Path to file containing projection matrix.""" + + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: + """Evaluate dynamic path expressions.""" + if self.symmetries is not None: + for i, sym in enumerate(self.symmetries): + self.symmetries[i] = sym.format( + project=project, task_name=task_name, task=task + ) + + if self.projection is not None: + self.projection = self.projection.format( + project=project, task_name=task_name, task=task + ) + + +BackendCfg.update_forward_refs() +GilbertCfg.update_forward_refs() # type: ignore +Resources.update_forward_refs() # type: ignore +Meta.update_forward_refs() # type: ignore +RuntimeCfg.update_forward_refs() # type: ignore +Task.update_forward_refs() # type: ignore +CSSFProject.update_forward_refs() # type: ignore diff --git a/cssfinder/enums.py b/cssfinder/enums.py new file mode 100644 index 0000000..f410dc8 --- /dev/null +++ b/cssfinder/enums.py @@ -0,0 +1,43 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""This module contains utility enums used within the cssfinder project.""" + +from __future__ import annotations + +from enum import Enum +from typing import TYPE_CHECKING + +if TYPE_CHECKING: + from typing_extensions import Self + + +class CaseInsensitiveEnum(Enum): + """Case insensitive enum base class.""" + + @classmethod + def _missing_(cls, value: object) -> Self: + name = str(value) + for member in cls: + if member.name.casefold() == name.casefold(): + return member + + raise AttributeError(f"No enum value matches name {name!r}.") diff --git a/cssfinder/hooks.py b/cssfinder/hooks.py new file mode 100644 index 0000000..668f942 --- /dev/null +++ b/cssfinder/hooks.py @@ -0,0 +1,74 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +from __future__ import annotations + +import json +import logging +from pathlib import Path +from typing import Callable + +import numpy as np +import numpy.typing as npt + +from cssfinder.io.matrix import MatrixIO + + +def save_matrix_hook( + destination: str | Path, +) -> Callable[[npt.NDArray[np.complex128]], None]: + """Builtin hook for saving state matrix. + + Matrix will be saved every time hook is called. + """ + destination_path = Path(destination) + mtx_io = MatrixIO.new(destination_path) + + def _save_matrix_hook(matrix: npt.NDArray[np.complex128]) -> None: + logging.debug( + "Saving output state to %r with matrix size %r", + destination_path.as_posix(), + matrix.shape, + ) + mtx_io.dump(matrix) + + return _save_matrix_hook + + +def save_corrections_hook( + destination: str | Path, +) -> Callable[[list[tuple[int, int, float]]], None]: + """Builtin hook for saving corrections array. + + Corrections will be saved every time hook is called. + """ + destination_path = Path(destination) + + def _save_corrections_hook(corrections: list[tuple[int, int, float]]) -> None: + logging.debug( + "Saving output state to %r with total corrections %r", + destination_path.as_posix(), + len(corrections), + ) + with destination_path.open("w", encoding="utf-8") as file: + json.dump(corrections, file, indent=2) + + return _save_corrections_hook diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index ec26bfa..333f38f 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -24,33 +24,50 @@ from __future__ import annotations -import json import logging import math -import operator from dataclasses import dataclass -from functools import reduce +from typing import Optional import numpy as np import numpy.typing as npt +from pydantic import BaseModel from cssfinder.constants import PRIMES +from cssfinder.cssfproject import GilbertCfg from cssfinder.io.matrix import MatrixIO -from cssfinder.project.cssfproject import CSSFProject -class AssetLoader: - """Provides interface for loading project assets from files.""" +class GilbertAssets(BaseModel): + """Container class for assets used by gilbert algorithm.""" - def __init__(self, project: CSSFProject) -> None: - self.project = project + state: State + """Initial state for algorithm.""" - def load_initial_state(self, force_squash: bool = False) -> State: + symmetries: Optional[list[npt.NDArray[np.complex128]]] + """List of symmetries of state.""" + + projection: Optional[npt.NDArray[np.complex128]] + """Projection to apply to state.""" + + class Config: + arbitrary_types_allowed = True + + +class GilbertAssetLoader: + """Loader of Gilbert algorithm assets.""" + + def load_assets(self, gilbert_cfg: GilbertCfg) -> GilbertAssets: """Load initial state from file indicated by cssfproject configuration.""" + return GilbertAssets( + state=self._load_state(gilbert_cfg), + symmetries=self._load_symmetries(gilbert_cfg), + projection=self._load_projection(gilbert_cfg), + ) - state_props = self.project.resources.initial_state - # Replace magic variables with dynamically determined values - state_matrix_file_path = self.project.expand_path(state_props.file) + def _load_state(self, gilbert_cfg: GilbertCfg) -> State: + state_props = gilbert_cfg.get_state() + state_matrix_file_path = state_props.file loader = MatrixIO.new(state_matrix_file_path) mtx = loader.load().astype(np.complex128) @@ -58,25 +75,18 @@ def load_initial_state(self, force_squash: bool = False) -> State: "Loaded matrix from %r of shape %r", state_matrix_file_path, mtx.shape ) - # Forcefully reshape array to match shape criterion - if force_squash: - total_size = reduce(operator.mul, mtx.shape) - one_axis_size = np.sqrt(total_size) - mtx = mtx.reshape((one_axis_size, one_axis_size)) - # We are expecting loaded ndarray to be a square matrix, all other numbers of # dimensions cause crash. self._check_matrix_shape(mtx) total_size = len(mtx) - depth, quantity = state_props.depth, state_props.quantity # Depth and quantity are optional and we can determine first matching pair # of those values based on number of rows in matrix if depth is None: old_quantity = quantity - depth, quantity = self.detect_depth_and_quantity(total_size) + depth, quantity = self._detect_depth_and_quantity(total_size) if old_quantity is not None: logging.warning( @@ -87,7 +97,7 @@ def load_initial_state(self, force_squash: bool = False) -> State: ) elif quantity is None: - quantity = self.detect_system_quantity(depth, total_size) + quantity = self._detect_system_quantity(depth, total_size) logging.info( "Matrix represents system with depth = %r, quantity = %r", depth, quantity @@ -125,7 +135,7 @@ def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: logging.critical("Expected square matrix, but received shape %r", mtx.shape) raise IncorrectMatrixShape(mtx) - def detect_depth_and_quantity(self, total: int) -> tuple[int, int]: + def _detect_depth_and_quantity(self, total: int) -> tuple[int, int]: """Detect both system depth and system quantity. Parameters @@ -159,7 +169,7 @@ def detect_depth_and_quantity(self, total: int) -> tuple[int, int]: "Couldn't determine size of system, prime number range exceeded." ) - def detect_system_quantity(self, depth: int, total: int) -> int: + def _detect_system_quantity(self, depth: int, total: int) -> int: """Detect system quantity (number of subsystems). Parameters @@ -190,49 +200,17 @@ def detect_system_quantity(self, depth: int, total: int) -> int: "False.", ) - def load_symmetries(self) -> None: + def _load_symmetries( + self, gilbert_cfg: GilbertCfg + ) -> Optional[list[npt.NDArray[np.complex128]]]: """Load matrices describing symmetries of system state.""" + return None - def load_projection(self) -> None: + def _load_projection( + self, gilbert_cfg: GilbertCfg + ) -> Optional[npt.NDArray[np.complex128]]: """Load matrix describing projection of system state.""" - - def save_output_state(self, state: npt.NDArray[np.complex128]) -> None: - """Save state in project output state file `state.mtx` in `output` directory of - your project. - - Parameters - ---------- - state : npt.NDArray[np.complex128] - State matrix to save. - """ - dest = self.project.output / "state.mtx" - logging.debug( - "Saving output state to %r with matrix size %r", - dest.as_posix(), - state.shape, - ) - mtx_io = MatrixIO.new(dest) - mtx_io.dump(state) - - def save_output_corrections( - self, corrections: list[tuple[int, int, float]] - ) -> None: - """Save corrections in project output state file `corrections.json` in `output` - directory of your project. - - Parameters - ---------- - corrections : npt.NDArray[np.complex128] - State matrix to save. - """ - dest = self.project.output / "corrections.json" - logging.debug( - "Saving output state to %r with total corrections %r", - dest.as_posix(), - len(corrections), - ) - with dest.open("w", encoding="utf-8") as file: - json.dump(corrections, file, indent=2) + return None @dataclass @@ -245,7 +223,7 @@ class State: depth: int """Depth of system, ie. - (D)imensions in qu(D)it. (d) + Dimensions in qu(D)it. (d) """ quantity: int @@ -273,3 +251,6 @@ class NotExpectedVector(IncorrectMatrixShape): class NotExpectedScalar(IncorrectMatrixShape): """Raised when got scalar instead of matrix.""" + + +GilbertAssets.update_forward_refs() diff --git a/cssfinder/project/__init__.py b/cssfinder/project/__init__.py deleted file mode 100644 index 7b7dfeb..0000000 --- a/cssfinder/project/__init__.py +++ /dev/null @@ -1,89 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Contains utilities directly corrected with structure and operations of -cssfproject.json files.""" - - -from __future__ import annotations - -import json -import logging -from pathlib import Path - -from cssfinder.project.cssfproject import CSSFProject - - -def load_project_from(file_or_directory: str | Path) -> CSSFProject: - """Load CSSFinder project in at least 1.0.0 version. - - Parameters - ---------- - file_or_directory : str | Path - Either project file (cssfproject.json) or directory containing project file. - - Returns - ------- - CSSFProjectV100 - Project information container. - - Raises - ------ - InvalidCSSFProjectContent - Raised when project file content is not a dictionary. - """ - - # Unify path type to Path - file_or_directory = Path(file_or_directory).expanduser().resolve() - - # When points to directory, dir must contain cssfproject.json file - if file_or_directory.is_dir(): - file_or_directory /= "cssfproject.json" - file_path = file_or_directory - del file_or_directory - - else: - file_path = file_or_directory - del file_or_directory - - logging.debug("Resolved project path to %r", file_path.as_posix()) - - content = file_path.read_text(encoding="utf-8") - try: - content = json.loads(content) - except json.JSONDecodeError as exc: - raise MalformedProjectFileError() from exc - - if not isinstance(content, dict): - logging.critical("Content of cssfproject.json file is not a dictionary.") - raise InvalidCSSFProjectContent(content) - - project = CSSFProject(**content) - project.set_file_path(file_path) - return project - - -class InvalidCSSFProjectContent(ValueError): - """Raised by load_from() when file content is not a dictionary.""" - - -class MalformedProjectFileError(ValueError): - """Rased when project file content can't be correctly decoded.""" diff --git a/cssfinder/project/cssfproject.py b/cssfinder/project/cssfproject.py deleted file mode 100644 index 2f591f9..0000000 --- a/cssfinder/project/cssfproject.py +++ /dev/null @@ -1,278 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""CSSFinder uses its own project format allowing for file based customization of -parameters used by gilbert algorithm. - -This file contains implementation of project configuration in 1.0.0 version. -""" - - -from __future__ import annotations - -import logging -from enum import Enum -from pathlib import Path -from typing import Optional, Type, TypeVar - -from pydantic import BaseModel, ConstrainedStr, EmailStr, Extra, Field - - -class CSSFProject(BaseModel): - """CSSFProject file specification.""" - - meta: Meta - """Project meta information like name and author.""" - - resources: Resources - """Resources used by project, including state matrices and other files.""" - - algorithm: Algorithm - - _file: Optional[Path] = None - """Path to loaded project file.""" - - class Config: - validate_assignment = True - extra = Extra.ignore - underscore_attrs_are_private = True - - def set_file_path(self, file: Path) -> None: - """Set `cssfproject.json` file path.""" - self._file = file.expanduser().resolve() - - @property - def file(self) -> Path: - """Path to `cssfproject.json` file.""" - if self._file is None: - return Path.cwd() / "cssfproject.json" - return self._file - - @property - def directory(self) -> Path: - """Path to directory containing `cssfproject.json` file.""" - if self._file is None: - return Path.cwd() - return self._file.parent - - @property - def output(self) -> Path: - """Path to output directory for this project.""" - directory = self.directory / "output" - directory.mkdir(0o764, True, True) - return directory - - def expand_path(self, path: str) -> str: - """Expand all special variables in path string. - - Parameters - ---------- - path : str - Path string to expand. - project : CSSFProjectBase - Project to expand path for, it will be used as source of some special - variables. - - Returns - ------- - str - Expanded path. - """ - return path.format(project=self) - - def info_display(self) -> None: - """Display configuration content.""" - logging.info("%s", "\n" + self.json(indent=2)) - - -class Meta(BaseModel): - """Project meta information.""" - - author: str - """Author full name.""" - - email: EmailStr - """Author email address.""" - - name: str - """Name of the project.""" - - description: str - """Description of the project.""" - - version: SemVerStr - """Version of the project.""" - - -class SemVerStr(ConstrainedStr): - """Semantic versioning string regex, see https://semver.org/""" - - regex = ( - r"^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-]" - + r"[0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(" - + r"[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$" - ) - - -class Resources(BaseModel): - """Project resources.""" - - initial_state: State - """Path to file containing initial state matrix.""" - - symmetries: Optional[list[str]] - """List of paths to files containing symmetry matrices.""" - - projection: Optional[str] - """Path to file containing projection matrix.""" - - -class State(BaseModel): - """State configuration.""" - - file: str - """Path to file containing state matrix.""" - - depth: Optional[int] - """Depth of system, ie. - - (D)imensions in qu(D)it. (d) - """ - - quantity: Optional[int] - """Quantity of systems. - - ie. number of qu(D)its in state. (n) - """ - - -class Algorithm(BaseModel): - """Algorithm configuration.""" - - type: AlgoType - """Type of algorithm to execute.""" - - mode: AlgoMode - """Algorithm mode to use.""" - - backend: Backend - """Backend to use for calculations.""" - - precision: Precision - """Precision of calculations.""" - - visibility: float = Field(ge=0.0, le=1.0) - """Visibility against white noise. - - Between 0 and 1. - """ - - max_epochs: int = Field(ge=1, le=1_000_000_000) - """Maximal number of algorithm epochs to perform. - - If other interruption condition is met before the number of epochs, algorithm wont - execute the rest of epochs. - """ - - iters_per_epoch: int = Field(ge=1, le=1_000_000) - """Number of iterations per epochs. - - Between iterations no checks are performed, which may speed up calculations. However - intermediate state of systems are not saved anywhere. - """ - - max_corrections: int - """Maximal number of corrections to collect. - - Use -1 to disable this limit. - """ - - -_CIEnumT = TypeVar("_CIEnumT", bound="_CIEnum") - - -class _CIEnum(Enum): - """Case insensitive enum base class.""" - - @classmethod - def _missing_(cls: Type[_CIEnumT], value: object) -> _CIEnumT: - name = str(value) - for member in cls: - if member.name.casefold() == name.casefold(): - return member - - raise AttributeError(f"No enum value matches name {name!r}.") - - -class AlgoType(_CIEnum): - """Type of algorithm.""" - - GILBERT = "GILBERT" - - -class AlgoMode(_CIEnum): - """Mode of algorithm.""" - - # pylint: disable=invalid-name - - FSnQd = "FSnQd" - """Full separability of n-quDit state.""" - - SBiPa = "SBiPi" - """Separability of a bipartite state.""" - - G3PaE3qD = "G3PaE3qD" - """Genuine 3-partite entanglement of a 3-quDit state.""" - - G4PaE3qD = "G4PaE3qD" - """Genuine 4-partite entanglement of a 3-quDit state.""" - - # pylint: enable=invalid-name - - -class Backend(_CIEnum): - """Backend to use for calculations.""" - - # pylint: disable=invalid-name - - NumPy = "NumPy" - - # pylint: enable=invalid-name - - -class Precision(_CIEnum): - """Precision of calculations performed.""" - - # pylint: disable=invalid-name - - DOUBLE = "double" - """64 bit floating point real part with 64 bit floating point complex value.""" - - FULL = "full" - """32 bit floating point real part with 32 bit floating point complex value.""" - - # pylint: enable=invalid-name - - -Algorithm.update_forward_refs() # type: ignore -Resources.update_forward_refs() # type: ignore -Meta.update_forward_refs() # type: ignore -CSSFProject.update_forward_refs() # type: ignore diff --git a/examples/5qubits/cssfproject.json b/examples/5qubits/cssfproject.json index c628518..4075e8f 100644 --- a/examples/5qubits/cssfproject.json +++ b/examples/5qubits/cssfproject.json @@ -7,23 +7,54 @@ "description": "Project description", "version": "1.0.0" }, - "resources": { - "initial_state": { - "file": "{project.directory}/5qubits_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": null, - "projection": null + "execution": { + "process_pool_size": "auto" }, - "algorithm": { - "type": "Gilbert", - "mode": "FSnQd", - "backend": "numpy", - "precision": "full", - "visibility": 0.4, - "max_epochs": 1000, - "iters_per_epoch": 20000, - "max_corrections": 1000 + "tasks": { + "0": { + "gilbert": { + "mode": "FSnQd", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 2000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.directory}/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } + }, + "1": { + "gilbert": { + "mode": { + "$ref": "#/tasks/0/gilbert/mode" + }, + "backend": { + "$ref": "#/tasks/0/gilbert/backend" + }, + "runtime": { + "$ref": "#/tasks/0/gilbert/runtime" + }, + "state": { + "file": "{project.directory}/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "$ref": "#/tasks/0/gilbert/resources" + } + } + } } } diff --git a/poetry.lock b/poetry.lock index fe13fb9..d1b0d2f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -16,7 +16,7 @@ files = [ name = "astroid" version = "2.14.2" description = "An abstract syntax tree for Python with inference support." -category = "main" +category = "dev" optional = false python-versions = ">=3.7.2" files = [ @@ -412,7 +412,7 @@ tox = ["tox"] name = "dill" version = "0.3.6" description = "serialize all of python" -category = "main" +category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -709,7 +709,7 @@ files = [ name = "isort" version = "5.12.0" description = "A Python utility / library to sort Python imports." -category = "main" +category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -796,6 +796,18 @@ MarkupSafe = ">=2.0" [package.extras] i18n = ["Babel (>=2.7)"] +[[package]] +name = "jsonref" +version = "1.1.0" +description = "jsonref is a library for automatic dereferencing of JSON Reference objects for Python." +category = "main" +optional = false +python-versions = ">=3.7" +files = [ + {file = "jsonref-1.1.0-py3-none-any.whl", hash = "sha256:590dc7773df6c21cbf948b5dac07a72a251db28b0238ceecce0a2abfa8ec30a9"}, + {file = "jsonref-1.1.0.tar.gz", hash = "sha256:32fe8e1d85af0fdefbebce950af85590b22b60f9e95443176adbde4e1ecea552"}, +] + [[package]] name = "jsonschema" version = "4.17.3" @@ -847,7 +859,7 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "lazy-object-proxy" version = "1.9.0" description = "A fast and thorough lazy object proxy." -category = "main" +category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1028,7 +1040,7 @@ files = [ name = "mccabe" version = "0.7.0" description = "McCabe checker, plugin for flake8" -category = "main" +category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1411,7 +1423,7 @@ files = [ name = "platformdirs" version = "2.6.2" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" +category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1693,7 +1705,7 @@ plugins = ["importlib-metadata"] name = "pylint" version = "2.16.2" description = "python code static checker" -category = "main" +category = "dev" optional = false python-versions = ">=3.7.2" files = [ @@ -2162,7 +2174,7 @@ tornado = ">=2.0" name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "main" +category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2174,7 +2186,7 @@ files = [ name = "tomlkit" version = "0.11.6" description = "Style preserving TOML library" -category = "main" +category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2325,7 +2337,7 @@ files = [ name = "wrapt" version = "1.15.0" description = "Module for decorators, wrappers and monkey patching." -category = "main" +category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" files = [ @@ -2510,4 +2522,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "1f9ed39154401a6c68d46fc600d1448fbf28ecbade65221026c51d30a70b6a75" +content-hash = "f689d627cb3c8f406e6ba79a7dbfb325f6a9ab07852639fc6f0ddf81781f52a0" diff --git a/pyproject.toml b/pyproject.toml index 6af2467..9808e2b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,7 @@ scipy = "^1.9.3" pydantic = { extras = ["email"], version = "^1.10.5" } typing-extensions = "^4.5.0" rich = "^13.3.1" +jsonref = "^1.1.0" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" From e44d2bfc6363594093ab3b0c2550d817cb19c444 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 3 Mar 2023 19:37:37 +0100 Subject: [PATCH 045/227] Add command line for showing plot of distance decay --- cssfinder/api.py | 52 ++++- cssfinder/base_model.py | 37 +++ cssfinder/cli.py | 42 +++- cssfinder/cssfproject.py | 99 ++++++-- cssfinder/hooks.py | 1 + cssfinder/io/asset_loader.py | 11 +- cssfinder/io/output_loader.py | 43 ++++ cssfinder/log.py | 8 +- cssfinder/report.py | 21 ++ poetry.lock | 427 +++++++++++++++++++++++++++++++++- pyproject.toml | 2 + 11 files changed, 701 insertions(+), 42 deletions(-) create mode 100644 cssfinder/base_model.py create mode 100644 cssfinder/io/output_loader.py diff --git a/cssfinder/api.py b/cssfinder/api.py index cd2e44a..c36d269 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -30,9 +30,11 @@ from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task from cssfinder.hooks import save_corrections_hook, save_matrix_hook from cssfinder.io.asset_loader import GilbertAssetLoader +from cssfinder.io.output_loader import GilbertOutputLoader +from cssfinder.report import create_corrections_plot -def run_project_file( +def run_project_from( project_file_path: Path | str, tasks: Optional[list[str]] = None ) -> None: """Load project and run all tasks.""" @@ -54,15 +56,14 @@ def run_project(project: CSSFProject, tasks: Optional[list[str]] = None) -> None message = "\n | ".join(project.json(indent=2).split("\n")) logging.info("%s", "\n | " + message) - for name, task in project.tasks.items(): - if tasks is None or name in tasks: - run_task(task, project.output / name) + for task in project.select_tasks(tasks): + run_task(task) -def run_task(task: Task, task_output_dir: Path) -> None: +def run_task(task: Task) -> None: """Run task until completed.""" if task.gilbert: - run_gilbert(task.gilbert, task_output_dir) + run_gilbert(task.gilbert, task.output) def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: @@ -75,8 +76,8 @@ def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: algorithm = Gilbert( assets.state, mode=config.mode, - backend=config.backend.name, - precision=config.backend.precision, + backend=config.get_backend().name, + precision=config.get_backend().precision, visibility=config.runtime.visibility, ) algorithm.run( @@ -88,3 +89,38 @@ def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: task_output_dir / "corrections.json" ), ) + + +def create_report_from(project_file_path: Path | str, task: str) -> None: + """Load project (`cssfproject.json`) and create report for task selected by + pattern.""" + project = CSSFProject.load_project(project_file_path) + logging.info( + "Loaded project %r by %r <%r>.", + project.meta.name, + project.meta.author, + project.meta.email, + ) + create_report(project, task) + + +def create_report(project: CSSFProject, task: str) -> None: + """Create report for task selected by pattern from project object.""" + + tasks = project.select_tasks([task]) + + if len(tasks) > 1: + matched_tasks_names = [t.name for t in tasks] + raise AmbiguousTaskKeyError( + f"Pattern {task!r} matches more than one task ({len(tasks)}): " + f"{matched_tasks_names!r}" + ) + + task_object, *_ = tasks + + corrections = GilbertOutputLoader().load_corrections(task_object) + create_corrections_plot(corrections) + + +class AmbiguousTaskKeyError(KeyError): + """Raised during report creation when name pattern selects more than one task.""" diff --git a/cssfinder/base_model.py b/cssfinder/base_model.py new file mode 100644 index 0000000..e447ae1 --- /dev/null +++ b/cssfinder/base_model.py @@ -0,0 +1,37 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""This module contains classes deriving from BaseModel used as base classes in +cssfinder code.""" + +from __future__ import annotations + +from pydantic import BaseModel, Extra + + +class CommonBaseModel(BaseModel): + """Universal base class for most of model classes which contains commonly used model + configuration.""" + + class Config: + validate_assignment = True + extra = Extra.ignore + underscore_attrs_are_private = True + arbitrary_types_allowed = True diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 4a9336c..0711739 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -32,7 +32,7 @@ import cssfinder from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError -from cssfinder.api import run_project_file +from cssfinder.api import AmbiguousTaskKeyError, create_report_from, run_project_from from cssfinder.cssfproject import ( InvalidCSSFProjectContent, MalformedProjectFileError, @@ -70,17 +70,29 @@ def main(verbose: int) -> None: ) -@main.command("project") +@main.group("project") +@click.pass_context @click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) -@click.option("--tasks", "-t", multiple=True) -def _project(path: str, tasks: Optional[list[str]]) -> None: - """Use project file to determine runtime configuration.""" +def _project(ctx: click.Context, path: str) -> None: + ctx.obj = path + + +@_project.command("run") +@click.option( + "--tasks", + "-t", + multiple=True, + help="Use to specify names of tasks to run. When omitted, all tasks are executed.", +) +@click.pass_obj +def _run(path: str, tasks: Optional[list[str]]) -> None: + """Run tasks from the project.""" if not tasks: tasks = None try: - run_project_file(path, tasks) + run_project_from(path, tasks) except ProjectFileNotFound as exc: logging.critical("Project file not found. %s", exc.args[0]) @@ -108,6 +120,24 @@ def _project(path: str, tasks: Optional[list[str]]) -> None: raise SystemExit(0) +@_project.command("task-report") +@click.argument( + "task", +) +@click.pass_obj +def _task_report(path: Path, task: str) -> None: + """Create short report for task. + + TASK - name pattern matching exactly one task, for which report should be created. + """ + try: + create_report_from(path, task) + + except AmbiguousTaskKeyError as exc: + logging.critical(exc.args[0]) + raise SystemExit(304_00) from exc + + @main.command() @click.argument( "mode", diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 06ec033..af6762f 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -28,20 +28,22 @@ from __future__ import annotations +import fnmatch import logging from pathlib import Path from typing import TYPE_CHECKING, Any, Iterable, Optional import jsonref -from pydantic import BaseModel, ConstrainedStr, EmailStr, Extra, Field, validator +from pydantic import ConstrainedStr, EmailStr, Field, validator +from cssfinder.base_model import CommonBaseModel from cssfinder.enums import CaseInsensitiveEnum if TYPE_CHECKING: from typing_extensions import Self -class CSSFProject(BaseModel): +class CSSFProject(CommonBaseModel): """CSSFProject file specification.""" meta: Meta @@ -55,10 +57,8 @@ class CSSFProject(BaseModel): _is_evaluated: bool = False - class Config: - validate_assignment = True - extra = Extra.ignore - underscore_attrs_are_private = True + def __init__(self, meta: Meta, tasks: list[Task] | dict[str, Task]) -> None: + super().__init__(meta=meta, tasks=tasks) @validator("tasks", pre=True, always=True) @classmethod @@ -73,8 +73,12 @@ def _validate_tasks( def eval_dynamic(self) -> None: """Evaluate dynamic path expressions.""" + if self._is_evaluated: + return + for task_name, task in self.tasks.items(): task.eval_dynamic(self, task_name, task) + self._is_evaluated = True def set_file_path(self, file: Path) -> None: @@ -156,9 +160,22 @@ def load_project(cls, file_or_directory: str | Path) -> Self: project = cls(**content) project.set_file_path(file_path) + project.eval_dynamic() return project + def select_tasks(self, patterns: Optional[list[str]] = None) -> list[Task]: + """Select all tasks matching list of patterns.""" + if patterns is None: + return list(self.tasks.values()) + + keys = set() + + for pattern in patterns: + keys.update(fnmatch.filter(self.tasks.keys(), pattern)) + + return [self.tasks[k] for k in keys] + class InvalidCSSFProjectContent(ValueError): """Raised by load_from() when file content is not a dictionary.""" @@ -172,7 +189,7 @@ class ProjectFileNotFound(FileNotFoundError): """Raised when project file can't be found in expected place.""" -class Meta(BaseModel): +class Meta(CommonBaseModel): """Project meta information.""" author: str @@ -201,26 +218,47 @@ class SemVerStr(ConstrainedStr): ) -class Task(BaseModel): +class Task(CommonBaseModel): """This represents algorithm task.""" gilbert: Optional[GilbertCfg] = Field(default=None) """Configuration of gilbert algorithm.""" + _output: Path = Field(default=Path.cwd()) + """Path default output directory.""" + + _task_name: str = Field(default="") + """Name of task assigned to it in project.""" + + @property + def output(self) -> Path: + """Path to output directory of task.""" + return self._output + + @property + def name(self) -> str: + """Name of this task in project.""" + return self._task_name + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: """Evaluate dynamic path expressions.""" if self.gilbert is not None: self.gilbert.eval_dynamic(project, task_name, task) + self._output = project.output / task_name + self._task_name = task_name -class GilbertCfg(BaseModel): +class GilbertCfg(CommonBaseModel): """Gilbert algorithm configuration container class.""" mode: AlgoMode """Algorithm mode to use.""" - backend: BackendCfg - """Configuration of backend which will be used for execution.""" + backend: Optional[BackendCfg] = Field(default=None) + """Configuration of backend which will be used for execution. + + When backend configuration is not specified, numpy with double precision is used. + """ state: State | str | Path """Path to file containing initial state matrix.""" @@ -228,9 +266,35 @@ class GilbertCfg(BaseModel): runtime: RuntimeCfg """Configuration of runtime limits and parameters influencing algorithm run time.""" - resources: Resources + resources: Optional[Resources] = Field(default=None) """Additional resources which may be used by algorithm.""" + @validator("resources", pre=True) + @classmethod + def _use_default_resources(cls, value: Optional[Resources]) -> Resources: + if value is None: + return Resources() + return value + + @validator("backend", pre=True) + @classmethod + def _use_default_backend(cls, value: Optional[BackendCfg]) -> BackendCfg: + if value is None: + return BackendCfg(name=Backend.NumPy, precision=Precision.DOUBLE) + return value + + def get_backend(self) -> BackendCfg: + """Return resources object.""" + if self.backend is None: + raise TypeError("Missing backend object.") + return self.backend + + def get_resources(self) -> Resources: + """Return resources object.""" + if self.resources is None: + raise TypeError("Missing resources object.") + return self.resources + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: """Evaluate dynamic path expressions.""" @@ -241,7 +305,7 @@ def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None self.state = State(file=self.state.expanduser().resolve().as_posix()) self.state.eval_dynamic(project, task_name, task) - self.resources.eval_dynamic(project, task_name, task) + self.get_resources().eval_dynamic(project, task_name, task) def get_state(self) -> State: """Return initial state information.""" @@ -269,13 +333,14 @@ class AlgoMode(CaseInsensitiveEnum): # pylint: enable=invalid-name -class BackendCfg(BaseModel): +class BackendCfg(CommonBaseModel): """Container class grouping configuration of backend used by Gilbert algorithm.""" name: Backend """Name of backend to use.""" precision: Precision + """Specify precision of calculations.""" class Backend(CaseInsensitiveEnum): @@ -302,7 +367,7 @@ class Precision(CaseInsensitiveEnum): # pylint: enable=invalid-name -class State(BaseModel): +class State(CommonBaseModel): """State configuration.""" file: str @@ -325,7 +390,7 @@ def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None self.file = self.file.format(project=project, task_name=task_name, task=task) -class RuntimeCfg(BaseModel): +class RuntimeCfg(CommonBaseModel): """Configuration of runtime limits and parameters influencing algorithm run time.""" visibility: float = Field(ge=0.0, le=1.0) @@ -355,7 +420,7 @@ class RuntimeCfg(BaseModel): """ -class Resources(BaseModel): +class Resources(CommonBaseModel): """Project resources.""" symmetries: Optional[list[str]] = Field(default=None) diff --git a/cssfinder/hooks.py b/cssfinder/hooks.py index 668f942..5ea80ef 100644 --- a/cssfinder/hooks.py +++ b/cssfinder/hooks.py @@ -18,6 +18,7 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. +"""This module contains basic hooks which can be used by tasks.""" from __future__ import annotations diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index 333f38f..8da8d87 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -31,14 +31,14 @@ import numpy as np import numpy.typing as npt -from pydantic import BaseModel +from cssfinder.base_model import CommonBaseModel from cssfinder.constants import PRIMES from cssfinder.cssfproject import GilbertCfg from cssfinder.io.matrix import MatrixIO -class GilbertAssets(BaseModel): +class GilbertAssets(CommonBaseModel): """Container class for assets used by gilbert algorithm.""" state: State @@ -50,9 +50,6 @@ class GilbertAssets(BaseModel): projection: Optional[npt.NDArray[np.complex128]] """Projection to apply to state.""" - class Config: - arbitrary_types_allowed = True - class GilbertAssetLoader: """Loader of Gilbert algorithm assets.""" @@ -201,13 +198,13 @@ def _detect_system_quantity(self, depth: int, total: int) -> int: ) def _load_symmetries( - self, gilbert_cfg: GilbertCfg + self, gilbert_cfg: GilbertCfg # pylint: disable=unused-argument ) -> Optional[list[npt.NDArray[np.complex128]]]: """Load matrices describing symmetries of system state.""" return None def _load_projection( - self, gilbert_cfg: GilbertCfg + self, gilbert_cfg: GilbertCfg # pylint: disable=unused-argument ) -> Optional[npt.NDArray[np.complex128]]: """Load matrix describing projection of system state.""" return None diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py new file mode 100644 index 0000000..d2a828f --- /dev/null +++ b/cssfinder/io/output_loader.py @@ -0,0 +1,43 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Contains class for loading output of Gilbert algorithm.""" + +from __future__ import annotations + +import pandas as pd + +from cssfinder.cssfproject import Task + + +class GilbertOutputLoader: + """Loader of Gilbert output files.""" + + def load_corrections(self, task: Task) -> pd.DataFrame: + """Load corrections saved from executed task. + + DataFrame object will have 3 columns: "iteration", "index" and "value". + """ + data_frame = pd.read_json(task.output / "corrections.json") + data_frame.rename( # pylint: disable=no-member + columns={0: "iteration", 1: "index", 2: "value"}, inplace=True + ) + + return data_frame diff --git a/cssfinder/log.py b/cssfinder/log.py index f0e3377..a600296 100644 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -35,7 +35,7 @@ import logging import sys -from logging import LogRecord, handlers +from logging import LogRecord, getLogger, handlers from pathlib import Path from typing import Any, Optional @@ -125,6 +125,12 @@ def configure_logger( stream_handler = _create_stream_handler(verbosity, use_rich) logger.addHandler(stream_handler) + matplotlib_logger = getLogger("matplotlib") + matplotlib_logger.setLevel(logging.WARNING) + + pandas_logger = getLogger("pandas") + pandas_logger.setLevel(logging.WARNING) + def _create_stream_handler(verbosity: int, use_rich: bool) -> logging.Handler: # By default stderr may have different encoding which may result in coding errors diff --git a/cssfinder/report.py b/cssfinder/report.py index 1982e95..1bc1e7e 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -21,3 +21,24 @@ """Utilities for runtime report creation.""" from __future__ import annotations + +import pandas as pd +from matplotlib import pyplot as plt + + +def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: + """Create corrections plot from data in DataFrame. + + DataFrame object must have 2 columns: "iteration" and "value". + """ + axes = plt.subplot() + + axes.plot(corrections[["index"]], corrections[["value"]]) + axes.grid(True) + + axes.set_xlabel("Correction index") + axes.set_ylabel("Correction value") + + axes.set_title("Distance decay") + + return axes diff --git a/poetry.lock b/poetry.lock index d1b0d2f..009e2de 100644 --- a/poetry.lock +++ b/poetry.lock @@ -283,6 +283,81 @@ files = [ {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] +[[package]] +name = "contourpy" +version = "1.0.7" +description = "Python library for calculating contours of 2D quadrilateral grids" +category = "main" +optional = false +python-versions = ">=3.8" +files = [ + {file = "contourpy-1.0.7-cp310-cp310-macosx_10_9_universal2.whl", hash = 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"jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "f689d627cb3c8f406e6ba79a7dbfb325f6a9ab07852639fc6f0ddf81781f52a0" +content-hash = "01480b1e733bcfeee215ece18261c7078b7657a3e533c97057fc813f5933dc9b" diff --git a/pyproject.toml b/pyproject.toml index 9808e2b..0780df2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,6 +20,8 @@ pydantic = { extras = ["email"], version = "^1.10.5" } typing-extensions = "^4.5.0" rich = "^13.3.1" jsonref = "^1.1.0" +matplotlib = "^3.7.0" +pandas = "^1.5.3" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" From cfd05628b31d50ba1dadbe0d8687e4873a1e735f Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 3 Mar 2023 19:43:16 +0100 Subject: [PATCH 046/227] Add dynamic configuration example to 5qubits example --- examples/5qubits/5qubits_in.mtx | 22 ++++++------ examples/5qubits/cssfproject.py | 61 +++++++++++++++++++++++++++++++++ 2 files changed, 72 insertions(+), 11 deletions(-) create mode 100644 examples/5qubits/cssfproject.py diff --git a/examples/5qubits/5qubits_in.mtx b/examples/5qubits/5qubits_in.mtx index 91c5cd9..c8abc16 100644 --- a/examples/5qubits/5qubits_in.mtx +++ b/examples/5qubits/5qubits_in.mtx @@ -1,9 +1,9 @@ -%%MatrixMarket matrix array integer symmetric +%%MatrixMarket matrix array float symmetric %Created with the Wolfram Language : www.wolfram.com 32 32 -1 +0.25 0 -1 +0.25 0 0 0 @@ -25,14 +25,14 @@ 0 0 0 -1 +0.25 0 0 0 0 0 0 --1 +-0.25 0 0 0 @@ -64,7 +64,7 @@ 0 0 0 -1 +0.25 0 0 0 @@ -86,14 +86,14 @@ 0 0 0 -1 +0.25 0 0 0 0 0 0 --1 +-0.25 0 0 0 @@ -493,14 +493,14 @@ 0 0 0 -1 +0.25 0 0 0 0 0 0 --1 +-0.25 0 0 0 @@ -528,4 +528,4 @@ 0 0 0 -1 +0.25 diff --git a/examples/5qubits/cssfproject.py b/examples/5qubits/cssfproject.py new file mode 100644 index 0000000..e9a14f2 --- /dev/null +++ b/examples/5qubits/cssfproject.py @@ -0,0 +1,61 @@ +"""This file contains example of dynamically generated configuration. + +In fact, what this script does, it simply uses cssfinder as library to perform +calculations. This approach allows us to determine list of tasks without typical +limitations of static files. +""" + +from __future__ import annotations + +from pathlib import Path + +from pydantic import EmailStr + +from cssfinder.api import run_project +from cssfinder.cssfproject import ( + AlgoMode, + Backend, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, +) + +TASKS = [ + Task( + gilbert=GilbertCfg( + mode=AlgoMode.FSnQd, + backend=BackendCfg( + name=Backend.NumPy, + precision=Precision.SINGLE, + ), + state=State(file=path.as_posix()), + runtime=RuntimeCfg( + visibility=0.4, + max_epochs=1000, + iters_per_epoch=1000, + max_corrections=1000, + ), + ), + ) + for path in Path(__file__).parent.glob("*_in.mtx") +] + + +run_project( + CSSFProject( + meta=Meta( + author="Example", + email=EmailStr("example@example.com"), + name="5qubits", + description="Project description", + version=SemVerStr("1.0.0"), + ), + tasks=TASKS, + ) +) From dc32e6340b4321bec160527dac52786057b81168 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 3 Mar 2023 19:43:50 +0100 Subject: [PATCH 047/227] Add Visual Studio Code configuration to repository --- .gitignore | 2 +- .vscode/dictionary.txt | 24 +++++++++++++ .vscode/settings.json | 80 ++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 105 insertions(+), 1 deletion(-) create mode 100644 .vscode/dictionary.txt create mode 100644 .vscode/settings.json diff --git a/.gitignore b/.gitignore index 4daf30d..fee0548 100644 --- a/.gitignore +++ b/.gitignore @@ -504,6 +504,7 @@ cython_debug/ !.vscode/launch.json !.vscode/extensions.json !.vscode/*.code-snippets +!.vscode/dictionary.txt # Local History for Visual Studio Code .history/ @@ -932,7 +933,6 @@ FodyWeavers.xsd # Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option) -.vscode/ .vs/ .jupyter/ coverage/ diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt new file mode 100644 index 0000000..ca4bf6d --- /dev/null +++ b/.vscode/dictionary.txt @@ -0,0 +1,24 @@ +astype +cssfinder +cssfproject +dtype +figsize +forceobj +jsonref +Krzysztof +looplift +mmread +mmwrite +ndarray +nogil +nopython +numba +numpy +pydantic +qubits +scipy +swapaxes +tensordot +Wiśniewski +xlabel +ylabel diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..a11b4df --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,80 @@ +{ + "python.analysis.indexing": true, + "python.autoComplete.extraPaths": ["source"], + "python.formatting.provider": "black", + "python.languageServer": "Pylance", + "python.linting.mypyArgs": [ + "--follow-imports=silent", + "--show-column-numbers", + "--no-pretty", + "--config-file=pyproject.toml" + ], + "python.linting.mypyEnabled": true, + "python.linting.mypyCategorySeverity.note": "Warning", + "python.linting.pylintEnabled": true, + "python.linting.flake8Enabled": false, + "python.terminal.activateEnvInCurrentTerminal": true, + "python.testing.pytestEnabled": true, + "python.testing.unittestEnabled": false, + "autoDocstring.docstringFormat": "numpy", + "autoDocstring.includeName": false, + "editor.rulers": [88, 100], + "editor.renderWhitespace": "selection", + "python.testing.pytestArgs": [ + "tests", + "source", + "--log-level=DEBUG", + "-s" + ], + "cSpell.customDictionaries": { + "custom-dictionary-user": { + "name": "workspace-dictionary", + "path": "./.vscode/dictionary.txt", + "addWords": true, + "scope": "workspace" + } + }, + "editor.codeActionsOnSave": { + "source.organizeImports": true, + "source.fixAll": true + }, + "python.linting.maxNumberOfProblems": 1000, + "python.analysis.extraPaths": [], + "files.exclude": { + "**/__pycache__": true, + "**/.hypothesis": true, + "**/.mypy_cache": true, + "**/.pytest_cache": true + }, + "python.analysis.diagnosticMode": "workspace", + "explorer.copyRelativePathSeparator": "/", + "C_Cpp.preferredPathSeparator": "Forward Slash", + "python.analysis.typeCheckingMode": "basic", + "python.analysis.inlayHints.functionReturnTypes": true, + "python.analysis.packageIndexDepths": [ + { + "name": "cssfinder", + "depth": 32, + "includeAllSymbols": true + }, + { + "name": "sklearn", + "depth": 2 + }, + { + "name": "matplotlib", + "depth": 2 + }, + { + "name": "scipy", + "depth": 2 + }, + { + "name": "django", + "depth": 2 + } + ], + "python.analysis.autoImportCompletions": true, + "python.analysis.completeFunctionParens": false, + "python.analysis.useLibraryCodeForTypes": true +} From ed5e8d6bfb7eb155181e162c7d01c8bf1d8657d0 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sat, 4 Mar 2023 00:47:18 +0100 Subject: [PATCH 048/227] Implement MVP of execution reports --- cssfinder/algorithm/backend/numpy/base.py | 4 +- cssfinder/api.py | 19 +++- cssfinder/cssfproject.py | 4 +- cssfinder/report.py | 130 ++++++++++++++++++++++ 4 files changed, 152 insertions(+), 5 deletions(-) diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index ab9426b..1a17b88 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -159,8 +159,8 @@ def _update_state( self._corrections.append( ( - epoch_index * iterations + iteration_index, - len(self._corrections), + epoch_index * iterations + iteration_index + 1, + len(self._corrections) + 1, float( self.impl.product( self._visibility_reduced, diff --git a/cssfinder/api.py b/cssfinder/api.py index c36d269..b176f5c 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -31,7 +31,11 @@ from cssfinder.hooks import save_corrections_hook, save_matrix_hook from cssfinder.io.asset_loader import GilbertAssetLoader from cssfinder.io.output_loader import GilbertOutputLoader -from cssfinder.report import create_corrections_plot +from cssfinder.report import ( + create_corrections_plot, + create_iteration_linear_plot, + display_short_report, +) def run_project_from( @@ -119,7 +123,18 @@ def create_report(project: CSSFProject, task: str) -> None: task_object, *_ = tasks corrections = GilbertOutputLoader().load_corrections(task_object) - create_corrections_plot(corrections) + + axes = create_corrections_plot(corrections) + axes.figure.set_figwidth(10) + axes.figure.set_figheight(10) + axes.figure.savefig((task_object.output / "decay.png").as_posix(), dpi=300) + + axes = create_iteration_linear_plot(corrections) + axes.figure.set_figwidth(10) + axes.figure.set_figheight(10) + axes.figure.savefig((task_object.output / "iterations.png").as_posix(), dpi=300) + + display_short_report(corrections.to_numpy()) class AmbiguousTaskKeyError(KeyError): diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index af6762f..240bce5 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -57,7 +57,9 @@ class CSSFProject(CommonBaseModel): _is_evaluated: bool = False - def __init__(self, meta: Meta, tasks: list[Task] | dict[str, Task]) -> None: + def __init__( + self, meta: Meta, tasks: list[Task] | dict[str, Task], *_: Any, **_k: Any + ) -> None: super().__init__(meta=meta, tasks=tasks) @validator("tasks", pre=True, always=True) diff --git a/cssfinder/report.py b/cssfinder/report.py index 1bc1e7e..fac4525 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -22,15 +22,25 @@ from __future__ import annotations +from dataclasses import dataclass +from functools import lru_cache +from typing import TYPE_CHECKING + +import numpy as np +import numpy.typing as npt import pandas as pd from matplotlib import pyplot as plt +if TYPE_CHECKING: + from typing_extensions import Self + def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: """Create corrections plot from data in DataFrame. DataFrame object must have 2 columns: "iteration" and "value". """ + plt.figure() axes = plt.subplot() axes.plot(corrections[["index"]], corrections[["value"]]) @@ -42,3 +52,123 @@ def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: axes.set_title("Distance decay") return axes + + +def create_iteration_linear_plot(corrections: pd.DataFrame) -> plt.Axes: + plt.figure() + axes = plt.subplot() + + axes.grid(True) + + props = SlopeProperties.find(corrections.to_numpy()) + axes.plot( + corrections[["iteration"]], + props.get_correction(corrections[["index"]].to_numpy()), + ) + + return axes + + +def cov( + array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] +) -> np.float64: + return np.mean( + np.multiply( + np.subtract(array_1, np.mean(array_1)), + np.subtract(array_2, np.mean(array_2)), + ) + ) + + +def trend( + array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] +) -> np.float64: + l1a = np.log(array_1) + l2a = np.log(array_2) + + return cov(l1a, l2a) / cov(l1a, l1a) + + +def offset( + array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] +) -> np.float64: + array_1_mean = np.mean(np.log(array_1)) + array_2_mean = np.mean(np.log(array_2)) + decay_trend = trend(array_1, array_2) + return_value = array_1_mean - array_2_mean * decay_trend + return return_value + + +def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: + values = values + upper_half = values[len(values) // 2 :] + + optimum = upper_half[-1] - 1e-6 + step1 = optimum / 10000 + + while R(upper_half, optimum - step1) > R(upper_half, optimum) and optimum > 0: + optimum = optimum - step1 + + return optimum + + +@lru_cache(16) +def _r_indexes(length: int) -> npt.NDArray[np.float64]: + indexes = np.arange(length) + return np.mean(np.square(indexes)) - np.square(np.mean(indexes)) + + +@lru_cache(16) +def _indexes(length: int) -> npt.NDArray[np.float64]: + return np.arange(length, dtype=np.float64) + + +def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: + ll1 = np.divide(1.0, np.subtract(values, a)) + length = len(values) + indexes = _indexes(length) + + aa1 = np.mean(np.multiply(ll1, indexes)) - np.mean(ll1) * np.mean(indexes) + aa2 = np.sqrt( + (np.mean(np.square(ll1)) - np.square(np.mean(ll1))) * _r_indexes(length) + ) + + return np.divide(aa1, aa2) + + +def display_short_report(data: npt.NDArray[np.float64]): + slope_properties = SlopeProperties.find(data) + + expr = f"corrections = trail ^ {slope_properties.aa1} * {slope_properties.bb1}" + + print( + "Basing on decay, the squared HS distance is estimated to be", + f"{slope_properties.optimum} (R={slope_properties.r_value})", + ) + print(f"The dependence between correction and trail is approximately: {expr}") + + +@dataclass +class SlopeProperties: + optimum: np.float64 + r_value: np.float64 + aa1: np.float64 + bb1: np.float64 + + def get_correction(self, x: np.float64) -> np.float64: + return np.multiply(np.power(x, self.aa1), self.bb1) + + @classmethod + def find(cls, data: npt.NDArray[np.float64]) -> Self: + iteration_index: npt.NDArray[np.float64] = data[:, 0] + correction_index: npt.NDArray[np.float64] = data[:, 1] + correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] + + optimum = find_correction_optimum(data[:, 2]) + + r_value = R(correction_value, optimum) + + aa1 = trend(iteration_index, correction_index) + bb1 = np.exp(offset(iteration_index, correction_index)) + + return cls(optimum, r_value, aa1, bb1) From 5d21b32faec2d1bf23ed0169d6f3bef50526b2ae Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 5 Mar 2023 22:57:43 +0100 Subject: [PATCH 049/227] Implement biseparable state mode --- .vscode/dictionary.txt | 2 + cssfinder/algorithm/backend/base.py | 10 +- .../backend/numpy/_impl/_complex128.py | 301 ++++++++++---- .../backend/numpy/_impl/_complex64.py | 307 ++++++++++---- cssfinder/algorithm/backend/numpy/base.py | 53 ++- cssfinder/algorithm/backend/numpy/impl.py | 102 ++++- cssfinder/algorithm/gilbert.py | 7 +- cssfinder/api.py | 22 +- cssfinder/cli.py | 24 +- cssfinder/io/output_loader.py | 12 +- examples/5qubits/cssfproject.json | 3 - examples/GHZ3/cssfproject.json | 65 +-- examples/GHZ4/cssfproject.json | 44 +- examples/future_project_file.json | 47 --- examples/proj/cssfproject.json | 44 +- scripts/templates/numpy.pyjinja2 | 381 +++++++++++++----- 16 files changed, 1004 insertions(+), 420 deletions(-) delete mode 100644 examples/future_project_file.json diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index ca4bf6d..9846f3c 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -1,4 +1,5 @@ astype +biseparable cssfinder cssfproject dtype @@ -16,6 +17,7 @@ numba numpy pydantic qubits +savefig scipy swapaxes tensordot diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index 431ac0e..3eb81cc 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -41,10 +41,18 @@ class BackendBase: backend_index: dict[tuple[Backend, Precision], Type[BackendBase]] = {} - def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: + def __init__( + self, + initial: State, + mode: AlgoMode, + visibility: float, + *, + is_debug: bool = False, + ) -> None: self.initial = initial self.visibility = visibility self.mode = mode + self.is_debug = is_debug @property def state(self) -> npt.NDArray[np.complex128]: diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 8e4c391..6301655 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -42,78 +42,174 @@ import numpy.typing as npt from numba import jit +# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ +# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ +# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = (_REAL + _IMAG - 1).astype(np.complex128) + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] +) -> np.float64: + """Calculate scalar product of two matrices.""" + + retval = np.trace(np.dot(matrix1, matrix2)).real + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex128]: + """Generate a random vector with Haar measure.""" + + real = np.random.uniform(0, 1, depth) + imag = np.random.uniform(0, 1, depth) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + """Generate multiple random vectors with Haar measure in form of matrix.""" + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + + val = np.sqrt(np.real(mtx2)) + + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def kronecker( + mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] +) -> npt.NDArray[np.complex128]: + """Kronecker Product.""" + + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + + dot_0_1 = np.tensordot(mtx, mtx1, 0) + + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] +) -> npt.NDArray[np.complex128]: + """Sandwich an operator with a unitary.""" + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + + return rho2a # type: ignore + + +# pylint: disable=line-too-long +# +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ +# +# pylint: disable=line-too-long + @jit(forceobj=True) def optimize_d_fs( - rho2: npt.NDArray[np.complex128], - rho3: npt.NDArray[np.complex128], + new_state: npt.NDArray[np.complex128], + visibility_state: npt.NDArray[np.complex128], depth: int, quantity: int, epochs: int, ) -> npt.NDArray[np.complex128]: """Optimize implementation for FSnQd mode.""" - product_2_3 = product(rho2, rho3) + product_2_3 = product(new_state, visibility_state) # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) if product_2_3 > product_rot2_3: unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) while (new_product_2_3 := product_rot2_3) > product_2_3: product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) return rotated_2.astype(np.complex128, copy=False) # type: ignore -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] -) -> np.float64: - """Calculate scalar product of two matrices.""" - - retval = np.trace(np.dot(matrix1, matrix2)).real - - return retval # type: ignore - - @jit(forceobj=True, cache=True) def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex128]: """N quDits.""" - value = _random_unitary_d_fs_val(depth) + value = _random_unitary_d_fs(depth) mtx = expand_d_fs(value, depth, quantity, idx) return mtx # type: ignore -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype(np.complex128) - - @jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: +def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex128]: random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth).astype(np.float64) + identity_mtx = np.identity(depth).astype(np.complex128) rand_mul = np.multiply(_VALUE, random_mtx) @@ -125,7 +221,7 @@ def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex128]: @jit(nopython=True, nogil=True, cache=True) def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Random n quDit state.""" - rand_vectors = get_random_haar(depth, quantity) + rand_vectors = get_random_haar_2d(depth, quantity) vector = normalize(rand_vectors[0]) for i in range(quantity - 1): @@ -138,40 +234,6 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: return vector # type: ignore -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Generate a random vector with Haar measure.""" - - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Normalization of a vector.""" - - mtx2 = np.dot(mtx, np.conj(mtx)) - - val = np.sqrt(np.real(mtx2)) - - retval = mtx / val - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Build a projection from a vector.""" - - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore - - @jit(forceobj=True, cache=True) def expand_d_fs( value: npt.NDArray[np.complex128], @@ -194,34 +256,113 @@ def expand_d_fs( return kronecker_2 # type: ignore -@jit(forceobj=True, cache=True) -def kronecker( - mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] -) -> npt.NDArray[np.complex128]: - """Kronecker Product.""" +# ██████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ██ ██████ ██████ ███████ - ddd1 = len(mtx) - ddd2 = len(mtx1) - output_shape = (ddd1 * ddd2, ddd1 * ddd2) +@jit(nopython=True, nogil=True, cache=True) +def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + """Draw random biseparable state.""" + random_vector_1 = normalize(get_random_haar_1d(depth)) + random_vector_2 = normalize(get_random_haar_1d(quantity)) + print(random_vector_1.shape) + print(random_vector_2.shape) - dot_0_1 = np.tensordot(mtx, mtx1, 0) + vector = np.outer(random_vector_1, random_vector_2) - out_mtx = np.swapaxes(dot_0_1, 1, 2) + vector = project(vector) - retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + """Draw random unitary for biseparable state.""" + + random_vector = normalize(get_random_haar_1d(depth)) + + random_matrix = project(random_vector) + + identity_depth = np.identity(depth).astype(np.complex128) + + identity_quantity = np.identity(quantity).astype(np.complex128) + + unitary_biseparable = _VALUE * random_matrix + identity_depth + + retval = kronecker(unitary_biseparable, identity_quantity) return retval # type: ignore @jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] -) -> npt.NDArray[np.complex128]: - """Sandwich an operator with a unitary.""" +def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex128]: + """Draw random unitary for biseparable state.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + random_vector = normalize(get_random_haar_1d(depth)) - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + random_matrix = project(random_vector) - return rho2a # type: ignore + identity_depth = np.identity(depth).astype(np.complex128) + + identity_quantity = np.identity(quantity).astype(np.complex128) + + unitary_biseparable = _VALUE * random_matrix + identity_depth + + retval = kronecker(identity_quantity, unitary_biseparable) + + return retval # type: ignore + + +@jit(forceobj=True) +def optimize_bs( + new_state: npt.NDArray[np.complex128], + visibility_state: npt.NDArray[np.complex128], + depth: int, + quantity: int, + updates_count: int, +) -> npt.NDArray[np.complex128]: + """Runs the minimization algorithm to optimize the biseparable state. + + Parameters + ---------- + new_state : npt.NDArray[np.complex128] + Randomly drawn state to be optimized. + visibility_state : npt.NDArray[np.complex128] + Visibility matrix. + depth : int + Depth of analyzed system. + quantity : int + Quantity of quDits in system. + updates_count : int + Number of optimizer iterations to execute. + + Returns + ------- + npt.NDArray[np.complex128] + Optimized state. + """ + + pp1 = product(new_state, visibility_state) + + return_state = new_state.copy() + + for index in range(updates_count): + if index % 2: + unitary = random_unitary_bs(depth, quantity) + else: + unitary = random_unitary_bs_reverse(depth, quantity) + + return_state = rotate(new_state, unitary) + + if pp1 > product(return_state, visibility_state): + unitary = unitary.conj().T + return_state = rotate(new_state, unitary) + + while (pp2 := product(return_state, visibility_state)) > pp1: + pp1 = pp2 + return_state = rotate(return_state, unitary) + + return return_state diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index b69ac53..f4c275c 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -42,78 +42,178 @@ import numpy.typing as npt from numba import jit +# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ +# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ +# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = (_REAL + _IMAG - 1).astype(np.complex64) + + +@jit(nopython=True, nogil=True, cache=True) +def product( + matrix1: npt.NDArray[np.complex64], matrix2: npt.NDArray[np.complex64] +) -> np.float32: + """Calculate scalar product of two matrices.""" + + retval = np.trace(np.dot(matrix1, matrix2)).real + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex64]: + """Generate a random vector with Haar measure.""" + + real = np.random.uniform(0, 1, depth) + imag = np.random.uniform(0, 1, depth) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + retval = (retval).astype(np.complex64) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex64]: + """Generate multiple random vectors with Haar measure in form of matrix.""" + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + retval = (retval).astype(np.complex64) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: + """Normalization of a vector.""" + + mtx2 = np.dot(mtx, np.conj(mtx)) + + val = np.sqrt(np.real(mtx2)) + + retval = mtx / val + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: + """Build a projection from a vector.""" + + retval = np.outer(mtx1, np.conj(mtx1)) + + return retval # type: ignore + + +@jit(forceobj=True, cache=True) +def kronecker( + mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] +) -> npt.NDArray[np.complex64]: + """Kronecker Product.""" + + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + + dot_0_1 = np.tensordot(mtx, mtx1, 0) + + out_mtx = np.swapaxes(dot_0_1, 1, 2) + + retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) + + return retval # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def rotate( + rho2: npt.NDArray[np.complex64], unitary: npt.NDArray[np.complex64] +) -> npt.NDArray[np.complex64]: + """Sandwich an operator with a unitary.""" + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + + return rho2a # type: ignore + + +# pylint: disable=line-too-long +# +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ +# +# pylint: disable=line-too-long + @jit(forceobj=True) def optimize_d_fs( - rho2: npt.NDArray[np.complex64], - rho3: npt.NDArray[np.complex64], + new_state: npt.NDArray[np.complex64], + visibility_state: npt.NDArray[np.complex64], depth: int, quantity: int, epochs: int, ) -> npt.NDArray[np.complex64]: """Optimize implementation for FSnQd mode.""" - product_2_3 = product(rho2, rho3) + product_2_3 = product(new_state, visibility_state) # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) if product_2_3 > product_rot2_3: unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) while (new_product_2_3 := product_rot2_3) > product_2_3: product_2_3 = new_product_2_3 rotated_2 = rotate(rotated_2, unitary) - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) return rotated_2.astype(np.complex64, copy=False) # type: ignore -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.complex64], matrix2: npt.NDArray[np.complex64] -) -> np.float32: - """Calculate scalar product of two matrices.""" - - retval = np.trace(np.dot(matrix1, matrix2)).real - - return retval # type: ignore - - @jit(forceobj=True, cache=True) def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex64]: """N quDits.""" - value = _random_unitary_d_fs_val(depth) + value = _random_unitary_d_fs(depth) mtx = expand_d_fs(value, depth, quantity, idx) return mtx # type: ignore -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype(np.complex64) - - @jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex64]: +def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex64]: random_mtx = random_d_fs(depth, 1) - identity_mtx = np.identity(depth).astype(np.float32) + identity_mtx = np.identity(depth).astype(np.complex64) rand_mul = np.multiply(_VALUE, random_mtx) @@ -125,7 +225,7 @@ def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[np.complex64]: @jit(nopython=True, nogil=True, cache=True) def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Random n quDit state.""" - rand_vectors = get_random_haar(depth, quantity) + rand_vectors = get_random_haar_2d(depth, quantity) vector = normalize(rand_vectors[0]) for i in range(quantity - 1): @@ -138,42 +238,6 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: return vector # type: ignore -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Generate a random vector with Haar measure.""" - - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - retval = (retval).astype(np.complex64) - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Normalization of a vector.""" - - mtx2 = np.dot(mtx, np.conj(mtx)) - - val = np.sqrt(np.real(mtx2)) - - retval = mtx / val - - return retval # type: ignore - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Build a projection from a vector.""" - - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore - - @jit(forceobj=True, cache=True) def expand_d_fs( value: npt.NDArray[np.complex64], @@ -196,34 +260,113 @@ def expand_d_fs( return kronecker_2 # type: ignore -@jit(forceobj=True, cache=True) -def kronecker( - mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] -) -> npt.NDArray[np.complex64]: - """Kronecker Product.""" +# ██████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ██ ██████ ██████ ███████ - ddd1 = len(mtx) - ddd2 = len(mtx1) - output_shape = (ddd1 * ddd2, ddd1 * ddd2) +@jit(nopython=True, nogil=True, cache=True) +def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: + """Draw random biseparable state.""" + random_vector_1 = normalize(get_random_haar_1d(depth)) + random_vector_2 = normalize(get_random_haar_1d(quantity)) + print(random_vector_1.shape) + print(random_vector_2.shape) - dot_0_1 = np.tensordot(mtx, mtx1, 0) + vector = np.outer(random_vector_1, random_vector_2) - out_mtx = np.swapaxes(dot_0_1, 1, 2) + vector = project(vector) - retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) + return vector # type: ignore + + +@jit(nopython=True, nogil=True, cache=True) +def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: + """Draw random unitary for biseparable state.""" + + random_vector = normalize(get_random_haar_1d(depth)) + + random_matrix = project(random_vector) + + identity_depth = np.identity(depth).astype(np.complex64) + + identity_quantity = np.identity(quantity).astype(np.complex64) + + unitary_biseparable = _VALUE * random_matrix + identity_depth + + retval = kronecker(unitary_biseparable, identity_quantity) return retval # type: ignore @jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.complex64], unitary: npt.NDArray[np.complex64] -) -> npt.NDArray[np.complex64]: - """Sandwich an operator with a unitary.""" +def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex64]: + """Draw random unitary for biseparable state.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + random_vector = normalize(get_random_haar_1d(depth)) - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + random_matrix = project(random_vector) - return rho2a # type: ignore + identity_depth = np.identity(depth).astype(np.complex64) + + identity_quantity = np.identity(quantity).astype(np.complex64) + + unitary_biseparable = _VALUE * random_matrix + identity_depth + + retval = kronecker(identity_quantity, unitary_biseparable) + + return retval # type: ignore + + +@jit(forceobj=True) +def optimize_bs( + new_state: npt.NDArray[np.complex64], + visibility_state: npt.NDArray[np.complex64], + depth: int, + quantity: int, + updates_count: int, +) -> npt.NDArray[np.complex64]: + """Runs the minimization algorithm to optimize the biseparable state. + + Parameters + ---------- + new_state : npt.NDArray[np.complex64] + Randomly drawn state to be optimized. + visibility_state : npt.NDArray[np.complex64] + Visibility matrix. + depth : int + Depth of analyzed system. + quantity : int + Quantity of quDits in system. + updates_count : int + Number of optimizer iterations to execute. + + Returns + ------- + npt.NDArray[np.complex64] + Optimized state. + """ + + pp1 = product(new_state, visibility_state) + + return_state = new_state.copy() + + for index in range(updates_count): + if index % 2: + unitary = random_unitary_bs(depth, quantity) + else: + unitary = random_unitary_bs_reverse(depth, quantity) + + return_state = rotate(new_state, unitary) + + if pp1 > product(return_state, visibility_state): + unitary = unitary.conj().T + return_state = rotate(new_state, unitary) + + while (pp2 := product(return_state, visibility_state)) > pp1: + pp1 = pp2 + return_state = rotate(return_state, unitary) + + return return_state diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 1a17b88..d65c66e 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -24,6 +24,7 @@ from __future__ import annotations +from types import MethodType from typing import Generic, Type, TypeVar, cast import numpy as np @@ -52,8 +53,15 @@ class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): primary_t: Type[PRIMARY] secondary_t: Type[SECONDARY_co] - def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: - super().__init__(initial, mode, visibility) + def __init__( + self, + initial: State, + mode: AlgoMode, + visibility: float, + *, + is_debug: bool = False, + ) -> None: + super().__init__(initial, mode, visibility, is_debug=is_debug) self._visibility = self._create_visibility_matrix() self._intermediate = self._create_intermediate_state() @@ -72,6 +80,25 @@ def __init__(self, initial: State, mode: AlgoMode, visibility: float) -> None: self._intermediate, self._visibility_reduced ) + if not self.is_debug: + self.jit() + + def jit(self) -> None: + """JIT compile performance critical parts of backend with numba.""" + _update_state = jit( # type: ignore + forceobj=True, cache=True, looplift=False, inline="always" + )( + self.__class__._update_state # pylint: disable=protected-access + ) + + setattr(self, "_update_state", MethodType(_update_state, self)) + + run_epoch = jit(forceobj=True, cache=True, looplift=False)( + self.__class__.run_epoch + ) + + setattr(self, "run_epoch", MethodType(run_epoch, self)) + def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: vis_state = self.visibility * self.initial.state inv_vis_ident = (1 - self.visibility) * np.identity( @@ -101,7 +128,6 @@ def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" return len(self._corrections) - @jit(forceobj=True, cache=True, looplift=False) def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" @@ -110,7 +136,12 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: epochs = 20 * depth * depth * quantity for iteration_index in range(iterations): - alternative_state = self.impl.random_d_fs(depth, quantity) + if self.mode == AlgoMode.FSnQd: + alternative_state = self.impl.random_d_fs(depth, quantity) + elif self.mode == AlgoMode.SBiPa: + alternative_state = self.impl.random_bs(depth, quantity) + else: + raise TypeError(self.mode) if ( self.impl.product(alternative_state, self._visibility_reduced) @@ -120,7 +151,6 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: alternative_state, iterations, epoch_index, epochs, iteration_index ) - @jit(forceobj=True, cache=True, looplift=False, inline="always") def _update_state( self, alternative_state: npt.NDArray[PRIMARY], @@ -132,9 +162,16 @@ def _update_state( depth = self.initial.depth quantity = self.initial.quantity - alternative_state = self.impl.optimize_d_fs( - alternative_state, self._visibility_reduced, depth, quantity, epochs - ) + if self.mode == AlgoMode.FSnQd: + alternative_state = self.impl.optimize_d_fs( + alternative_state, self._visibility_reduced, depth, quantity, epochs + ) + elif self.mode == AlgoMode.SBiPa: + alternative_state = self.impl.optimize_bs( + alternative_state, self._visibility_reduced, depth, quantity, epochs + ) + else: + raise TypeError(self.mode) aa3: SECONDARY_co = self.impl.product(alternative_state, alternative_state) aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index 08c6f42..9de340d 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -37,6 +37,12 @@ class Implementation(Generic[PRIMARY, SECONDARY_co], Protocol): """Implementation of Gilbert algorithm utilities with specific precision.""" + # █████ ██████ ███ ███ ███ ███ ██████ ███ ██ + # ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ + # ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ + # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ + # █████ ██████ ██ ██ ██ ██ ██████ ██ ████ + @staticmethod def product( matrix1: npt.NDArray[PRIMARY], matrix2: npt.NDArray[PRIMARY] @@ -45,13 +51,18 @@ def product( ... @staticmethod - def normalize(mtx: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: - """Normalization of a vector.""" + def get_random_haar_1d(depth: int) -> npt.NDArray[PRIMARY]: + """Generate a random vector with Haar measure.""" ... @staticmethod - def get_random_haar(depth: int) -> npt.NDArray[PRIMARY]: - """Generate a random vector with Haar measure.""" + def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: + """Generate multiple random vectors with Haar measure in form of matrix.""" + ... + + @staticmethod + def normalize(mtx: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: + """Normalization of a vector.""" ... @staticmethod @@ -60,14 +71,33 @@ def project(mtx1: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: ... @staticmethod - def random_d_fs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Random n quDit state.""" + def kronecker( + mtx: npt.NDArray[PRIMARY], mtx1: npt.NDArray[PRIMARY] + ) -> npt.NDArray[PRIMARY]: + """Kronecker Product.""" ... + @staticmethod + def rotate( + rho2: npt.NDArray[PRIMARY], unitary: npt.NDArray[PRIMARY] + ) -> npt.NDArray[PRIMARY]: + """Sandwich an operator with a unitary.""" + ... + + # pylint: disable=line-too-long + # + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ + # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ + # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ + # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ + # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ + # + # pylint: enable=line-too-long + @staticmethod def optimize_d_fs( - rho2: npt.NDArray[PRIMARY], - rho3: npt.NDArray[PRIMARY], + new_state: npt.NDArray[PRIMARY], + visibility_state: npt.NDArray[PRIMARY], depth: int, quantity: int, epochs: int, @@ -82,6 +112,11 @@ def random_unitary_d_fs( """N quDits.""" ... + @staticmethod + def random_d_fs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: + """Draw random n quDit state.""" + ... + @staticmethod def expand_d_fs( # pylint: disable=invalid-name value: npt.NDArray[PRIMARY], @@ -92,16 +127,53 @@ def expand_d_fs( # pylint: disable=invalid-name """Expand an operator to n quDits.""" ... + # ██████ ███████ ███ ███ ██████ ██████ ███████ + # ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ + # ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ + # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ + # ██████ ███████ ██ ██ ██████ ██████ ███████ + @staticmethod - def kronecker( - mtx: npt.NDArray[PRIMARY], mtx1: npt.NDArray[PRIMARY] - ) -> npt.NDArray[PRIMARY]: - """Kronecker Product.""" + def random_bs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: + """Draw random biseparable state.""" ... @staticmethod - def rotate( - rho2: npt.NDArray[PRIMARY], unitary: npt.NDArray[PRIMARY] + def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: + """Draw random unitary for biseparable state.""" + ... + + @staticmethod + def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: + """Draw random unitary for biseparable state.""" + ... + + @staticmethod + def optimize_bs( + new_state: npt.NDArray[PRIMARY], + visibility_state: npt.NDArray[PRIMARY], + depth: int, + quantity: int, + updates_count: int, ) -> npt.NDArray[PRIMARY]: - """Sandwich an operator with a unitary.""" + """Runs the minimization algorithm to optimize the biseparable state. + + Parameters + ---------- + new_state : npt.NDArray[np.complex128] + Randomly drawn state to be optimized. + visibility_state : npt.NDArray[np.complex128] + Visibility matrix. + depth : int + Depth of analyzed system. + quantity : int + Quantity of quDits in system. + updates_count : int + Number of optimizer iterations to execute. + + Returns + ------- + npt.NDArray[np.complex128] + Optimized state. + """ ... diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index b5b9ce8..288b7e6 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -45,14 +45,19 @@ def __init__( backend: Backend, precision: Precision, visibility: float, + *, + is_debug: bool = False, ) -> None: self.initial = initial self.mode = mode self.precision = precision self.visibility = visibility + self.is_debug = is_debug backend_type = _backend.new(backend, self.precision) - self.backend = backend_type(self.initial, self.mode, self.visibility) + self.backend = backend_type( + self.initial, self.mode, self.visibility, is_debug=self.is_debug + ) self._state: Optional[npt.NDArray[np.complex128]] = None self._corrections: Optional[list[tuple[int, int, float]]] = None diff --git a/cssfinder/api.py b/cssfinder/api.py index b176f5c..f8c6f34 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -39,7 +39,10 @@ def run_project_from( - project_file_path: Path | str, tasks: Optional[list[str]] = None + project_file_path: Path | str, + tasks: Optional[list[str]] = None, + *, + is_debug: bool = False, ) -> None: """Load project and run all tasks.""" project = CSSFProject.load_project(project_file_path) @@ -49,10 +52,12 @@ def run_project_from( project.meta.author, project.meta.email, ) - run_project(project, tasks) + run_project(project, tasks, is_debug=is_debug) -def run_project(project: CSSFProject, tasks: Optional[list[str]] = None) -> None: +def run_project( + project: CSSFProject, tasks: Optional[list[str]] = None, *, is_debug: bool = False +) -> None: """Run all tasks defined in project.""" project.eval_dynamic() logging.debug("Running project %r", project.meta.name) @@ -61,16 +66,18 @@ def run_project(project: CSSFProject, tasks: Optional[list[str]] = None) -> None logging.info("%s", "\n | " + message) for task in project.select_tasks(tasks): - run_task(task) + run_task(task, is_debug=is_debug) -def run_task(task: Task) -> None: +def run_task(task: Task, *, is_debug: bool = False) -> None: """Run task until completed.""" if task.gilbert: - run_gilbert(task.gilbert, task.output) + run_gilbert(task.gilbert, task.output, is_debug=is_debug) -def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: +def run_gilbert( + config: GilbertCfg, task_output_dir: Path, *, is_debug: bool = False +) -> None: """Run Gilbert algorithm part of task.""" asset_loader = GilbertAssetLoader() assets = asset_loader.load_assets(config) @@ -83,6 +90,7 @@ def run_gilbert(config: GilbertCfg, task_output_dir: Path) -> None: backend=config.get_backend().name, precision=config.get_backend().precision, visibility=config.runtime.visibility, + is_debug=is_debug, ) algorithm.run( epochs=config.runtime.max_epochs, diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 0711739..80fdbdc 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -24,6 +24,7 @@ from __future__ import annotations import logging +from dataclasses import dataclass from pathlib import Path from typing import Optional @@ -41,7 +42,16 @@ from cssfinder.log import configure_logger +@dataclass +class Ctx: + """Command line context wrapper class.""" + + is_debug: bool = False + project_path: Optional[str] = None + + @click.group(invoke_without_command=True, no_args_is_help=True) +@click.pass_context @click.option( "-v", "--verbose", @@ -51,8 +61,11 @@ "-v, -vv, -vvv to gradually increase it.", ) @click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") -def main(verbose: int) -> None: +@click.option("--debug", is_flag=True, default=False) +def main(ctx: click.Context, verbose: int, debug: bool) -> None: """CSSFinder is a script for finding closest separable states.""" + ctx.obj = Ctx(is_debug=debug) + configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %r", pendulum.now()) @@ -74,7 +87,7 @@ def main(verbose: int) -> None: @click.pass_context @click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) def _project(ctx: click.Context, path: str) -> None: - ctx.obj = path + ctx.obj.project_path = path @_project.command("run") @@ -85,14 +98,17 @@ def _project(ctx: click.Context, path: str) -> None: help="Use to specify names of tasks to run. When omitted, all tasks are executed.", ) @click.pass_obj -def _run(path: str, tasks: Optional[list[str]]) -> None: +def _run(ctx: Ctx, tasks: Optional[list[str]]) -> None: """Run tasks from the project.""" if not tasks: tasks = None + if ctx.project_path is None: + raise RuntimeError("ctx.project_path shall not be None.") + try: - run_project_from(path, tasks) + run_project_from(ctx.project_path, tasks, is_debug=ctx.is_debug) except ProjectFileNotFound as exc: logging.critical("Project file not found. %s", exc.args[0]) diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py index d2a828f..3ade426 100644 --- a/cssfinder/io/output_loader.py +++ b/cssfinder/io/output_loader.py @@ -22,6 +22,8 @@ from __future__ import annotations +from typing import cast + import pandas as pd from cssfinder.cssfproject import Task @@ -35,9 +37,13 @@ def load_corrections(self, task: Task) -> pd.DataFrame: DataFrame object will have 3 columns: "iteration", "index" and "value". """ - data_frame = pd.read_json(task.output / "corrections.json") - data_frame.rename( # pylint: disable=no-member - columns={0: "iteration", 1: "index", 2: "value"}, inplace=True + # pylint: disable + data_frame: pd.DataFrame = cast( + pd.DataFrame, pd.read_json(task.output / "corrections.json") ) + data_frame.rename( + columns={0: "iteration", 1: "index", 2: "value"}, inplace=True + ) + # pylint: enable return data_frame diff --git a/examples/5qubits/cssfproject.json b/examples/5qubits/cssfproject.json index 4075e8f..ebcb30f 100644 --- a/examples/5qubits/cssfproject.json +++ b/examples/5qubits/cssfproject.json @@ -7,9 +7,6 @@ "description": "Project description", "version": "1.0.0" }, - "execution": { - "process_pool_size": "auto" - }, "tasks": { "0": { "gilbert": { diff --git a/examples/GHZ3/cssfproject.json b/examples/GHZ3/cssfproject.json index c31a549..b6e3829 100644 --- a/examples/GHZ3/cssfproject.json +++ b/examples/GHZ3/cssfproject.json @@ -7,34 +7,41 @@ "description": "Project description", "version": "1.0.0" }, - "resources": { - "initial_state": { - "file": "{project.directory}/GHZ3_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": [ - "{project.directory}/GHZ3_sym_0_0.mtx", - "{project.directory}/GHZ3_sym_0_1.mtx", - "{project.directory}/GHZ3_sym_1_0.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx", - "{project.directory}/GHZ3_sym_1_2.mtx", - "{project.directory}/GHZ3_sym_1_3.mtx", - "{project.directory}/GHZ3_sym_1_4.mtx", - "{project.directory}/GHZ3_sym_1_5.mtx", - "{project.directory}/GHZ3_sym_1_6.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx" - ], - "projection": null - }, - "algorithm": { - "type": "Gilbert", - "mode": "G3PaE3qD", - "backend": "numpy", - "precision": "full", - "visibility": 0.4, - "max_epochs": 1000, - "iters_per_epoch": 1000, - "max_corrections": 1000 + "tasks": { + "0": { + "gilbert": { + "mode": "G3PaE3qD", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.directory}/GHZ3_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": [ + "{project.directory}/GHZ3_sym_0_0.mtx", + "{project.directory}/GHZ3_sym_0_1.mtx", + "{project.directory}/GHZ3_sym_1_0.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx", + "{project.directory}/GHZ3_sym_1_2.mtx", + "{project.directory}/GHZ3_sym_1_3.mtx", + "{project.directory}/GHZ3_sym_1_4.mtx", + "{project.directory}/GHZ3_sym_1_5.mtx", + "{project.directory}/GHZ3_sym_1_6.mtx", + "{project.directory}/GHZ3_sym_1_1.mtx" + ], + "projection": null + } + } + } } } diff --git a/examples/GHZ4/cssfproject.json b/examples/GHZ4/cssfproject.json index 5884161..84b6486 100644 --- a/examples/GHZ4/cssfproject.json +++ b/examples/GHZ4/cssfproject.json @@ -7,23 +7,33 @@ "description": "Project description", "version": "1.0.0" }, - "resources": { - "initial_state": { - "file": "{project.directory}/GHZ4_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": null, - "projection": null + "execution": { + "process_pool_size": "auto" }, - "algorithm": { - "type": "Gilbert", - "mode": "G4PaE3qD", - "backend": "numpy", - "precision": "full", - "visibility": 0.4, - "max_epochs": 1000, - "iters_per_epoch": 1000, - "max_corrections": 1000 + "tasks": { + "0": { + "gilbert": { + "mode": "G4PaE3qD", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.directory}/GHZ4_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } + } } } diff --git a/examples/future_project_file.json b/examples/future_project_file.json deleted file mode 100644 index 92b55cf..0000000 --- a/examples/future_project_file.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "version": "1.0.0", - "meta": { - "author": "Example", - "email": "example@example.com", - "name": "5qubits", - "description": "Project description", - "version": "1.0.0" - }, - "algorithm": { - "gilbert": { - "profiles": { - "0": { - "config": { - "mode": "FSnQd", - "backend": "numpy", - "precision": "full", - "visibility": 0.4, - "max_epochs": 1000, - "iters_per_epoch": 20000, - "max_corrections": 1000 - }, - "resources": { - "initial_state": { - "file": "{project.directory}/GHZ3_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": [ - "{project.directory}/GHZ3_sym_0_0.mtx", - "{project.directory}/GHZ3_sym_0_1.mtx", - "{project.directory}/GHZ3_sym_1_0.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx", - "{project.directory}/GHZ3_sym_1_2.mtx", - "{project.directory}/GHZ3_sym_1_3.mtx", - "{project.directory}/GHZ3_sym_1_4.mtx", - "{project.directory}/GHZ3_sym_1_5.mtx", - "{project.directory}/GHZ3_sym_1_6.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx" - ], - "projection": null - } - } - } - } - } -} diff --git a/examples/proj/cssfproject.json b/examples/proj/cssfproject.json index 57e467e..6d0de90 100644 --- a/examples/proj/cssfproject.json +++ b/examples/proj/cssfproject.json @@ -7,23 +7,33 @@ "description": "Project description", "version": "1.0.0" }, - "resources": { - "initial_state": { - "file": "{project.directory}/proj_in.mtx", - "depth": null, - "quantity": null - }, - "symmetries": null, - "projection": null + "execution": { + "process_pool_size": "auto" }, - "algorithm": { - "type": "Gilbert", - "mode": "SBiPi", - "backend": "numpy", - "precision": "full", - "visibility": 0.4, - "max_epochs": 1000, - "iters_per_epoch": 1000, - "max_corrections": 1000 + "tasks": { + "0": { + "gilbert": { + "mode": "SBiPi", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.directory}/proj_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } + } } } diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index ad60868..f8f5008 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -34,7 +34,6 @@ Spec - Floating precision: {{floating}} - Complex precision: {{complex}} - """ from __future__ import annotations @@ -45,49 +44,200 @@ from numba import jit {% if debug_dtype_checks %} + from typing import Any +# ██████ ███████ ██████ ██ ██ ██████ +# ██ ██ ██ ██ ██ ██ ██ ██ +# ██ ██ █████ ██████ ██ ██ ██ ███ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ███████ ██████ ██████ ██████ + + def assert_dtype(ob: Any, dtype: Any) -> None: if ob.dtype != dtype: raise AssertionError(ob.dtype) + {% endif %} +# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ +# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ +# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ + + +_REAL = np.cos(0.01 * np.pi) +_IMAG = 1j * np.sin(0.01 * np.pi) +_VALUE = (_REAL + _IMAG - 1).astype({{complex}}) + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def product( + matrix1: npt.NDArray[{{complex}}], matrix2: npt.NDArray[{{complex}}] +) -> {{floating}}: + """Calculate scalar product of two matrices.""" + {% if debug_dtype_checks %}assert_dtype(matrix1, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(matrix2, {{complex}}){% endif %} + + retval = np.trace(np.dot(matrix1, matrix2)).real + {% if debug_dtype_checks %}assert_dtype(retval, {{floating}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: + """Generate a random vector with Haar measure.""" + + real = np.random.uniform(0, 1, depth) + imag = np.random.uniform(0, 1, depth) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + {% if is_32bit %} + {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} + {# as real * imag results in np.complex128 type. #} + retval = (retval).astype({{complex}}) + {% endif %} + + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: + """Generate multiple random vectors with Haar measure in form of matrix.""" + + real = np.random.uniform(0, 1, (quantity, depth)) + imag = np.random.uniform(0, 1, (quantity, depth)) + + retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + {% if is_32bit %} + {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} + {# as real * imag results in np.complex128 type. #} + retval = (retval).astype({{complex}}) + {% endif %} + + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: + """Normalization of a vector.""" + {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + + mtx2 = np.dot(mtx, np.conj(mtx)) + {% if debug_dtype_checks %}assert_dtype(mtx2, {{complex}}){% endif %} + + val = np.sqrt(np.real(mtx2)) + {% if debug_dtype_checks %}assert_dtype(val, {{floating}}){% endif %} + + retval = (mtx / val) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: + """Build a projection from a vector.""" + {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} + + retval = np.outer(mtx1, np.conj(mtx1)) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(forceobj=True, cache=True) +{% endif %}def kronecker( + mtx: npt.NDArray[{{complex}}], mtx1: npt.NDArray[{{complex}}] +) -> npt.NDArray[{{complex}}]: + """Kronecker Product.""" + {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} + + ddd1 = len(mtx) + ddd2 = len(mtx1) + + output_shape = (ddd1 * ddd2, ddd1 * ddd2) + + dot_0_1 = np.tensordot(mtx, mtx1, 0) + {% if debug_dtype_checks %}assert_dtype(dot_0_1, {{complex}}){% endif %} + + out_mtx = np.swapaxes(dot_0_1, 1, 2) + {% if debug_dtype_checks %}assert_dtype(out_mtx, {{complex}}){% endif %} + + retval = out_mtx.reshape(output_shape).astype({{complex}}, copy=False) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def rotate( + rho2: npt.NDArray[{{complex}}], unitary: npt.NDArray[{{complex}}] +) -> npt.NDArray[{{complex}}]: + """Sandwich an operator with a unitary.""" + {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} + + rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot + {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + + rho2a = np.dot(unitary, rho2a) # matmul replaced with dot + {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + + return rho2a # type: ignore + +# pylint: disable=line-too-long +# +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ +# +# pylint: disable=line-too-long {% if not disable_jit %}@jit(forceobj=True) {% endif %}def optimize_d_fs( - rho2: npt.NDArray[{{complex}}], - rho3: npt.NDArray[{{complex}}], + new_state: npt.NDArray[{{complex}}], + visibility_state: npt.NDArray[{{complex}}], depth: int, quantity: int, epochs: int, ) -> npt.NDArray[{{complex}}]: """Optimize implementation for FSnQd mode.""" - {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(rho3, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(new_state, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(visibility_state, {{complex}}){% endif %} - product_2_3 = product(rho2, rho3) + product_2_3 = product(new_state, visibility_state) # To make sure rotated_2 is not unbound unitary = random_unitary_d_fs(depth, quantity, 0) {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) for idx in range(epochs): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) if product_2_3 > product_rot2_3: unitary = unitary.conj().T - rotated_2 = rotate(rho2, unitary) + rotated_2 = rotate(new_state, unitary) {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} while (new_product_2_3 := product_rot2_3) > product_2_3: @@ -95,31 +245,17 @@ def assert_dtype(ob: Any, dtype: Any) -> None: rotated_2 = rotate(rotated_2, unitary) {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} - product_rot2_3 = product(rotated_2, rho3) + product_rot2_3 = product(rotated_2, visibility_state) return rotated_2.astype({{complex}}, copy=False) # type: ignore -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def product( - matrix1: npt.NDArray[{{complex}}], matrix2: npt.NDArray[{{complex}}] -) -> {{floating}}: - """Calculate scalar product of two matrices.""" - {% if debug_dtype_checks %}assert_dtype(matrix1, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(matrix2, {{complex}}){% endif %} - - retval = np.trace(np.dot(matrix1, matrix2)).real - {% if debug_dtype_checks %}assert_dtype(retval, {{floating}}){% endif %} - - return retval # type: ignore - - {% if not disable_jit %}@jit(forceobj=True, cache=True) {% endif %}def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[{{complex}}]: """N quDits.""" - value = _random_unitary_d_fs_val(depth) + value = _random_unitary_d_fs(depth) {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} mtx = expand_d_fs(value, depth, quantity, idx) @@ -128,18 +264,13 @@ def assert_dtype(ob: Any, dtype: Any) -> None: return mtx # type: ignore -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype({{complex}}) - - {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def _random_unitary_d_fs_val(depth: int) -> npt.NDArray[{{complex}}]: +{% endif %}def _random_unitary_d_fs(depth: int) -> npt.NDArray[{{complex}}]: random_mtx = random_d_fs(depth, 1) {% if debug_dtype_checks %}assert_dtype(random_mtx, {{complex}}){% endif %} - identity_mtx = np.identity(depth).astype({{floating}}) - {% if debug_dtype_checks %}assert_dtype(identity_mtx, {{floating}}){% endif %} + identity_mtx = np.identity(depth).astype({{complex}}) + {% if debug_dtype_checks %}assert_dtype(identity_mtx, {{complex}}){% endif %} rand_mul = np.multiply(_VALUE, random_mtx) {% if debug_dtype_checks %}assert_dtype(rand_mul, {{complex}}){% endif %} @@ -152,7 +283,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Random n quDit state.""" - rand_vectors = get_random_haar(depth, quantity) + rand_vectors = get_random_haar_2d(depth, quantity) vector = normalize(rand_vectors[0]) {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} @@ -169,52 +300,6 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return vector # type: ignore -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def get_random_haar(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Generate a random vector with Haar measure.""" - - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - {% if is_32bit %} - {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} - {# as real * imag results in np.complex128 type. #} - retval = (retval).astype({{complex}}) - {% endif %} - - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore - - -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: - """Normalization of a vector.""" - {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - - mtx2 = np.dot(mtx, np.conj(mtx)) - {% if debug_dtype_checks %}assert_dtype(mtx2, {{complex}}){% endif %} - - val = np.sqrt(np.real(mtx2)) - {% if debug_dtype_checks %}assert_dtype(val, {{floating}}){% endif %} - - retval = (mtx / val) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore - - -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: - """Build a projection from a vector.""" - {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} - - retval = np.outer(mtx1, np.conj(mtx1)) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore - {% if not disable_jit %}@jit(forceobj=True, cache=True) {% endif %}def expand_d_fs( @@ -243,43 +328,127 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return kronecker_2 # type: ignore -{% if not disable_jit %}@jit(forceobj=True, cache=True) -{% endif %}def kronecker( - mtx: npt.NDArray[{{complex}}], mtx1: npt.NDArray[{{complex}}] -) -> npt.NDArray[{{complex}}]: - """Kronecker Product.""" - {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} +# ██████ ███████ ███ ███ ██████ ██████ ███████ +# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ +# ██████ ███████ ██ ██ ██████ ██████ ███████ - ddd1 = len(mtx) - ddd2 = len(mtx1) - output_shape = (ddd1 * ddd2, ddd1 * ddd2) +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def random_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: + """Draw random biseparable state.""" + random_vector_1 = normalize(get_random_haar_1d(depth)) + random_vector_2 = normalize(get_random_haar_1d(quantity)) + print(random_vector_1.shape) + print(random_vector_2.shape) + + vector = np.outer(random_vector_1, random_vector_2) + {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - dot_0_1 = np.tensordot(mtx, mtx1, 0) - {% if debug_dtype_checks %}assert_dtype(dot_0_1, {{complex}}){% endif %} + vector = project(vector) + {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - out_mtx = np.swapaxes(dot_0_1, 1, 2) - {% if debug_dtype_checks %}assert_dtype(out_mtx, {{complex}}){% endif %} + return vector # type: ignore - retval = out_mtx.reshape(output_shape).astype({{complex}}, copy=False) + +{% macro _random_unitary_bs() -%} + random_vector = normalize(get_random_haar_1d(depth)) + {% if debug_dtype_checks %}assert_dtype(random_vector, {{complex}}){% endif %} + + random_matrix = project(random_vector) + {% if debug_dtype_checks %}assert_dtype(random_matrix, {{complex}}){% endif %} + + identity_depth = np.identity(depth).astype({{complex}}) + {% if debug_dtype_checks %}assert_dtype(identity_depth, {{complex}}){% endif %} + + identity_quantity = np.identity(quantity).astype({{complex}}) + {% if debug_dtype_checks %}assert_dtype(identity_quantity, {{complex}}){% endif %} + + unitary_biseparable = (_VALUE * random_matrix + identity_depth) + {% if debug_dtype_checks %}assert_dtype(unitary_biseparable, {{complex}}){% endif %} +{%- endmacro %} + + +{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) +{% endif %}def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: + """Draw random unitary for biseparable state.""" + + {{_random_unitary_bs()}} + + retval = kronecker(unitary_biseparable, identity_quantity) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} return retval # type: ignore {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def rotate( - rho2: npt.NDArray[{{complex}}], unitary: npt.NDArray[{{complex}}] +{% endif %}def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: + """Draw random unitary for biseparable state.""" + + {{_random_unitary_bs()}} + + retval = kronecker(identity_quantity, unitary_biseparable) + {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} + + return retval # type: ignore + + +{% if not disable_jit %}@jit(forceobj=True) +{% endif %}def optimize_bs( + new_state: npt.NDArray[{{complex}}], + visibility_state: npt.NDArray[{{complex}}], + depth: int, + quantity: int, + updates_count: int, ) -> npt.NDArray[{{complex}}]: - """Sandwich an operator with a unitary.""" - {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} + """Runs the minimization algorithm to optimize the biseparable state. + + Parameters + ---------- + new_state : npt.NDArray[{{complex}}] + Randomly drawn state to be optimized. + visibility_state : npt.NDArray[{{complex}}] + Visibility matrix. + depth : int + Depth of analyzed system. + quantity : int + Quantity of quDits in system. + updates_count : int + Number of optimizer iterations to execute. + + Returns + ------- + npt.NDArray[{{complex}}] + Optimized state. + """ + + pp1 = product(new_state, visibility_state) + + return_state = new_state.copy() + + for index in range(updates_count): + if index % 2: + unitary = random_unitary_bs(depth, quantity) + else: + unitary = random_unitary_bs_reverse(depth, quantity) + {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + return_state = rotate(new_state, unitary) + {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} + if pp1 > product(return_state, visibility_state): + unitary = unitary.conj().T + return_state = rotate(new_state, unitary) + {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - return rho2a # type: ignore + while (pp2 := product(return_state, visibility_state)) > pp1: + pp1 = pp2 + return_state = rotate(return_state, unitary) + {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} + + {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} + + {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} + + return return_state From 798ecef5c5661bb5d056db74f62e0a2157327512 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 5 Mar 2023 23:09:11 +0100 Subject: [PATCH 050/227] Replace pylint with ruff --- .pre-commit-config.yaml | 14 +- .vscode/settings.json | 16 +- .../backend/numpy/_impl/_complex128.py | 14 +- .../backend/numpy/_impl/_complex64.py | 14 +- cssfinder/algorithm/backend/numpy/impl.py | 14 +- cssfinder/constants.py | 56 +- cssfinder/io/output_loader.py | 3 +- poetry.lock | 610 +++++++----------- pyproject.toml | 440 +------------ scripts/templates/numpy.pyjinja2 | 14 +- 10 files changed, 298 insertions(+), 897 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2fb6525..265b303 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -77,14 +77,8 @@ repos: - id: trailing-whitespace - id: debug-statements - - repo: local + - repo: https://github.com/charliermarsh/ruff-pre-commit + # Ruff version. + rev: "v0.0.254" hooks: - - id: pylint - name: pylint - entry: pylint - language: system - types: [python] - args: [ - "-rn", # Only display messages - "-sn", # Don't display the score - ] + - id: ruff diff --git a/.vscode/settings.json b/.vscode/settings.json index a11b4df..19ea955 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -11,7 +11,7 @@ ], "python.linting.mypyEnabled": true, "python.linting.mypyCategorySeverity.note": "Warning", - "python.linting.pylintEnabled": true, + "python.linting.pylintEnabled": false, "python.linting.flake8Enabled": false, "python.terminal.activateEnvInCurrentTerminal": true, "python.testing.pytestEnabled": true, @@ -57,22 +57,18 @@ "depth": 32, "includeAllSymbols": true }, - { - "name": "sklearn", - "depth": 2 - }, { "name": "matplotlib", - "depth": 2 + "depth": 4 }, { "name": "scipy", - "depth": 2 + "depth": 4 }, { - "name": "django", - "depth": 2 - } + "name": "numpy", + "depth": 4 + }, ], "python.analysis.autoImportCompletions": true, "python.analysis.completeFunctionParens": false, diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 6301655..6ade2e7 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -144,15 +144,11 @@ def rotate( return rho2a # type: ignore -# pylint: disable=line-too-long -# -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ -# -# pylint: disable=line-too-long +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa @jit(forceobj=True) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index f4c275c..7c26f28 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -148,15 +148,11 @@ def rotate( return rho2a # type: ignore -# pylint: disable=line-too-long -# -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ -# -# pylint: disable=line-too-long +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa @jit(forceobj=True) diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index 9de340d..968fdcf 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -84,15 +84,11 @@ def rotate( """Sandwich an operator with a unitary.""" ... - # pylint: disable=line-too-long - # - # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ - # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ - # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ - # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ - # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ - # - # pylint: enable=line-too-long + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa + # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa + # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa + # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa + # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa @staticmethod def optimize_d_fs( diff --git a/cssfinder/constants.py b/cssfinder/constants.py index bdf1024..13f6126 100644 --- a/cssfinder/constants.py +++ b/cssfinder/constants.py @@ -26,37 +26,35 @@ import numpy as np # fmt: off -# pylint: disable=line-too-long PRIMES = np.array([ - 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, - 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, - 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, - 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, - 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, - 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, - 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, - 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, - 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, - 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, - 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, - 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, - 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, - 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, - 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, - 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, - 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, - 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, - 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, - 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, - 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, - 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, - 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, - 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, - 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, - 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, - 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, # noqa + 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, # noqa + 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, # noqa + 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, # noqa + 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, # noqa + 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, # noqa + 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, # noqa + 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, # noqa + 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, # noqa + 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, # noqa + 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, # noqa + 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, # noqa + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, # noqa + 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, # noqa + 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, # noqa + 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, # noqa + 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, # noqa + 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, # noqa + 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, # noqa + 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, # noqa + 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, # noqa + 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, # noqa + 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, # noqa + 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, # noqa + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, # noqa + 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, # noqa + 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, # noqa 1973, 1979, 1987, 1993, 1997, 1999, ], dtype=np.int64) -# pylint: enable=line-too-long # fmt: on """All prime numbers from 2 to 1999, used by algorithms in this package.""" diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py index 3ade426..0ba178b 100644 --- a/cssfinder/io/output_loader.py +++ b/cssfinder/io/output_loader.py @@ -37,7 +37,7 @@ def load_corrections(self, task: Task) -> pd.DataFrame: DataFrame object will have 3 columns: "iteration", "index" and "value". 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"sha256:d06730c6aed78cee4126234cf2d071e01b44b915e725a6cb439a879ec9754a3a"}, -] - [[package]] name = "xattr" version = "0.10.1" @@ -2943,4 +2809,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "01480b1e733bcfeee215ece18261c7078b7657a3e533c97057fc813f5933dc9b" +content-hash = "b2d2337dcb44ecce4f8ab2e11bbe42c7878fad922fc38e9b011b2360a6445d57" diff --git a/pyproject.toml b/pyproject.toml index 0780df2..bbbc525 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,7 +25,6 @@ pandas = "^1.5.3" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = "^22.12.0" -pylint = "^2.16.2" isort = "^5.11.4" docformatter = { extras = ["tomli"], version = "^1.5.1" } pytest = "^7.2.0" @@ -39,6 +38,7 @@ snakeviz = "^2.1.1" poethepoet = "^0.18.1" poetry = "^1.3.2" jinja2 = "^3.1.2" +ruff = "^0.0.254" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" @@ -55,7 +55,7 @@ requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" [tool.pytest.ini_options] # ANCHOR: tool.pytest -minversion = "7.1.0" +minversion = "7.2.0" norecursedirs = ["external", "data"] python_files = ["test_*.py", "*_test.py"] testpaths = ["src/eldritch", "test"] @@ -212,439 +212,3 @@ color_output = true error_summary = true # Show absolute paths to files. show_absolute_path = true - -[tool.pylint.main] # ANCHOR: tool.pylint.main -# Analyse import fallback blocks. This can be used to support both Python 2 and 3 -# compatible code, which means that the block might have code that exists only in -# one or another interpreter, leading to false positives when analysed. -# analyse-fallback-blocks = -# Always return a 0 (non-error) status code, even if lint errors are found. This -# is primarily useful in continuous integration scripts. -# exit-zero = -# A comma-separated list of package or module names from where C extensions may -# be loaded. Extensions are loading into the active Python interpreter and may -# run arbitrary code. -extension-pkg-allow-list = ["pydantic"] -# A comma-separated list of package or module names from where C extensions may -# be loaded. Extensions are loading into the active Python interpreter and may -# run arbitrary code. (This is an alternative name to extension-pkg-allow-list -# for backward compatibility.) -# extension-pkg-whitelist = -# Return non-zero exit code if any of these messages/categories are detected, -# even if score is above --fail-under value. Syntax same as enable. Messages -# specified are enabled, while categories only check already-enabled messages. -# fail-on = -# Specify a score threshold to be exceeded before program exits with error. -fail-under = 10 -# Interpret the stdin as a python script, whose filename needs to be passed as -# the module_or_package argument. -# from-stdin = -# Files or directories to be skipped. They should be base names, not paths. -ignore = ["CVS"] -# Add files or directories matching the regex patterns to the ignore-list. The -# regex matches against paths and can be in Posix or Windows format. -# ignore-paths = -# Files or directories matching the regex patterns are skipped. The regex matches -# against base names, not paths. The default value ignores Emacs file locks -ignore-patterns = ["^\\.#"] -# List of module names for which member attributes should not be checked (useful -# for modules/projects where namespaces are manipulated during runtime and thus -# existing member attributes cannot be deduced by static analysis). It supports -# qualified module names, as well as Unix pattern matching. -ignored-modules = ["black"] -# Python code to execute, usually for sys.path manipulation such as -# pygtk.require(). -# init-hook = -# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the -# number of processors available to use, and will cap the count on Windows to -# avoid hangs. -jobs = 1 -# Control the amount of potential inferred values when inferring a single object. -# This can help the performance when dealing with large functions or complex, -# nested conditions. -limit-inference-results = 100 -# List of plugins (as comma separated values of python module names) to load, -# usually to register additional checkers. -# load-plugins = -# Pickle collected data for later comparisons. -persistent = true -# Minimum Python version to use for version dependent checks. Will default to the -# version used to run pylint. -py-version = "3.9" -# Discover python modules and packages in the file system subtree. -# recursive = -# When enabled, pylint would attempt to guess common misconfiguration and emit -# user-friendly hints instead of false-positive error messages. -suggestion-mode = true - -# Allow loading of arbitrary C extensions. Extensions are imported into the -# active Python interpreter and may run arbitrary code. -# unsafe-load-any-extension = -[tool.pylint.basic] # ANCHOR: tool.pylint.basic -# Naming style matching correct argument names. -argument-naming-style = "snake_case" -# Regular expression matching correct argument names. Overrides argument-naming- -# style. If left empty, argument names will be checked with the set naming style. -# argument-rgx = -# Naming style matching correct attribute names. -attr-naming-style = "snake_case" -# Regular expression matching correct attribute names. Overrides attr-naming- -# style. If left empty, attribute names will be checked with the set naming -# style. -# attr-rgx = -# Bad variable names which should always be refused, separated by a comma. -bad-names = ["foo", "bar", "baz", "toto", "tutu", "tata"] -# Bad variable names regexes, separated by a comma. If names match any regex, -# they will always be refused -# bad-names-rgxs = -# Naming style matching correct class attribute names. -class-attribute-naming-style = "any" -# Regular expression matching correct class attribute names. Overrides class- -# attribute-naming-style. If left empty, class attribute names will be checked -# with the set naming style. -# class-attribute-rgx = -# Naming style matching correct class constant names. -class-const-naming-style = "UPPER_CASE" -# Regular expression matching correct class constant names. Overrides class- -# const-naming-style. If left empty, class constant names will be checked with -# the set naming style. -# class-const-rgx = -# Naming style matching correct class names. -class-naming-style = "PascalCase" -# Regular expression matching correct class names. Overrides class-naming-style. -# If left empty, class names will be checked with the set naming style. -# class-rgx = -# Naming style matching correct constant names. -const-naming-style = "UPPER_CASE" -# Regular expression matching correct constant names. Overrides const-naming- -# style. If left empty, constant names will be checked with the set naming style. -# const-rgx = -# Minimum line length for functions/classes that require docstrings, shorter ones -# are exempt. -docstring-min-length = -1 -# Naming style matching correct function names. -function-naming-style = "snake_case" -# Regular expression matching correct function names. Overrides function-naming- -# style. If left empty, function names will be checked with the set naming style. -# function-rgx = -# Good variable names which should always be accepted, separated by a comma. -good-names = ["i", "j", "k", "ex", "Run", "_"] -# Good variable names regexes, separated by a comma. If names match any regex, -# they will always be accepted -# good-names-rgxs = -# Include a hint for the correct naming format with invalid-name. -# include-naming-hint = -# Naming style matching correct inline iteration names. -inlinevar-naming-style = "any" -# Regular expression matching correct inline iteration names. Overrides -# inlinevar-naming-style. If left empty, inline iteration names will be checked -# with the set naming style. -# inlinevar-rgx = -# Naming style matching correct method names. -method-naming-style = "snake_case" -# Regular expression matching correct method names. Overrides method-naming- -# style. If left empty, method names will be checked with the set naming style. -# method-rgx = -# Naming style matching correct module names. -module-naming-style = "snake_case" -# Regular expression matching correct module names. Overrides module-naming- -# style. If left empty, module names will be checked with the set naming style. -# module-rgx = -# Colon-delimited sets of names that determine each other's naming style when the -# name regexes allow several styles. -# name-group = -# Regular expression which should only match function or class names that do not -# require a docstring. -no-docstring-rgx = "(on_.*?_hook|_.*|Test.*|test_.*|Config)" -# List of decorators that produce properties, such as abc.abstractproperty. Add -# to this list to register other decorators that produce valid properties. These -# decorators are taken in consideration only for invalid-name. -property-classes = ["abc.abstractproperty"] -# Regular expression matching correct type variable names. If left empty, type -# variable names will be checked with the set naming style. -# typevar-rgx = -# Naming style matching correct variable names. -variable-naming-style = "snake_case" - -# Regular expression matching correct variable names. Overrides variable-naming- -# style. If left empty, variable names will be checked with the set naming style. -# variable-rgx = -[tool.pylint.classes] # ANCHOR: tool.pylint.classes -# Warn about protected attribute access inside special methods -# check-protected-access-in-special-methods = -# List of method names used to declare (i.e. assign) instance attributes. -defining-attr-methods = [ - "__init__", - "__new__", - "setUp", - "__post_init__", - "_setup", - "setup_method", -] -# List of member names, which should be excluded from the protected access -# warning. -exclude-protected = ["_asdict", "_fields", "_replace", "_source", "_make"] -# List of valid names for the first argument in a class method. -valid-classmethod-first-arg = ["cls"] -# List of valid names for the first argument in a metaclass class method. -valid-metaclass-classmethod-first-arg = ["cls"] - -[tool.pylint.design] # ANCHOR: tool.pylint.design -# List of regular expressions of class ancestor names to ignore when counting -# public methods (see R0903) -exclude-too-few-public-methods = [".*"] -# List of qualified class names to ignore when counting class parents (see R0901) -# ignored-parents = -# Maximum number of arguments for function / method. -max-args = 6 -# Maximum number of attributes for a class (see R0902). -max-attributes = 24 -# Maximum number of boolean expressions in an if statement (see R0916). -max-bool-expr = 2 -# Maximum number of branch for function / method body. -max-branches = 12 -# Maximum number of locals for function / method body. -max-locals = 15 -# Maximum number of parents for a class (see R0901). -max-parents = 7 -# Maximum number of public methods for a class (see R0904). -max-public-methods = 20 -# Maximum number of return / yield for function / method body. -max-returns = 12 -# Maximum number of statements in function / method body. -max-statements = 50 -# Minimum number of public methods for a class (see R0903). -min-public-methods = 0 - -[tool.pylint.exceptions] # ANCHOR: tool.pylint.exceptions -# Exceptions that will emit a warning when caught. -overgeneral-exceptions = ["builtins.BaseException", "builtins.Exception"] - -[tool.pylint.format] # ANCHOR: tool.pylint.format -# Expected format of line ending, e.g. empty (any line ending), LF or CRLF. -# expected-line-ending-format = -# Regexp for a line that is allowed to be longer than the limit. -ignore-long-lines = "^\\s*(# )??$" -# Number of spaces of indent required inside a hanging or continued line. -indent-after-paren = 4 -# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1 -# tab). -indent-string = " " -# Maximum number of characters on a single line. -max-line-length = 88 -# Maximum number of lines in a module. -max-module-lines = 3000 - -# Allow the body of a class to be on the same line as the declaration if body -# contains single statement. -# single-line-class-stmt = -# Allow the body of an if to be on the same line as the test if there is no else. -# single-line-if-stmt = -[tool.pylint.imports] # ANCHOR: tool.pylint.imports -# List of modules that can be imported at any level, not just the top level one. -# allow-any-import-level = -# Allow wildcard imports from modules that define __all__. -# allow-wildcard-with-all = -# Deprecated modules which should not be used, separated by a comma. -# deprecated-modules = -# Output a graph (.gv or any supported image format) of external dependencies to -# the given file (report RP0402 must not be disabled). -# ext-import-graph = -# Output a graph (.gv or any supported image format) of all (i.e. internal and -# external) dependencies to the given file (report RP0402 must not be disabled). -# import-graph = -# Output a graph (.gv or any supported image format) of internal dependencies to -# the given file (report RP0402 must not be disabled). -# int-import-graph = -# Force import order to recognize a module as part of the standard compatibility -# libraries. -# known-standard-library = -# Force import order to recognize a module as part of a third party library. -known-third-party = [] - -# Couples of modules and preferred modules, separated by a comma. -# preferred-modules = -[tool.pylint.logging] # ANCHOR: tool.pylint.logging -# The type of string formatting that logging methods do. `old` means using % -# formatting, `new` is for `{}` formatting. -logging-format-style = "old" -# Logging modules to check that the string format arguments are in logging -# function parameter format. -logging-modules = ["logging"] - -[tool.pylint."messages control"] # ANCHOR: tool.pylint."messages control" -# Only show warnings with the listed confidence levels. Leave empty to show all. -# Valid levels: HIGH, CONTROL_FLOW, INFERENCE, INFERENCE_FAILURE, UNDEFINED. -confidence = [ - "HIGH", - "CONTROL_FLOW", - "INFERENCE", - "INFERENCE_FAILURE", - "UNDEFINED", -] -# Disable the message, report, category or checker with the given id(s). You can -# either give multiple identifiers separated by comma (,) or put this option -# multiple times (only on the command line, not in the configuration file where -# it should appear only once). You can also use "--disable=all" to disable -# everything first and then re-enable specific checks. For example, if you want -# to run only the similarities checker, you can use "--disable=all -# --enable=similarities". If you want to run only the classes checker, but have -# no Warning level messages displayed, use "--disable=all --enable=classes -# --disable=W". -disable = ["logging-too-many-args", "unnecessary-ellipsis", "duplicate-code"] -# Enable the message, report, category or checker with the given id(s). You can -# either give multiple identifier separated by comma (,) or put this option -# multiple time (only on the command line, not in the configuration file where it -# should appear only once). See also the "--disable" option for examples. -enable = ["c-extension-no-member"] - -[tool.pylint.miscellaneous] # ANCHOR: tool.pylint.miscellaneous -# List of note tags to take in consideration, separated by a comma. -notes = ["FIXME", "XXX", "TODO"] - -# Regular expression of note tags to take in consideration. -# notes-rgx = -[tool.pylint.refactoring] # ANCHOR: tool.pylint.refactoring -# Maximum number of nested blocks for function / method body -max-nested-blocks = 5 -# Complete name of functions that never returns. When checking for inconsistent- -# return-statements if a never returning function is called then it will be -# considered as an explicit return statement and no message will be printed. -never-returning-functions = ["sys.exit", "argparse.parse_error"] - -[tool.pylint.reports] # ANCHOR: tool.pylint.reports -# Python expression which should return a score less than or equal to 10. You -# have access to the variables 'fatal', 'error', 'warning', 'refactor', -# 'convention', and 'info' which contain the number of messages in each category, -# as well as 'statement' which is the total number of statements analyzed. This -# score is used by the global evaluation report (RP0004). -evaluation = "max(0, 0 if fatal else 10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10))" -# Template used to display messages. This is a python new-style format string -# used to format the message information. See doc for all details. -# msg-template = -# Set the output format. Available formats are text, parseable, colorized, json -# and msvs (visual studio). You can also give a reporter class, e.g. -# mypackage.mymodule.MyReporterClass. -# output-format = -# Tells whether to display a full report or only the messages. -# reports = -# Activate the evaluation score. -score = true - -[tool.pylint.similarities] # ANCHOR: tool.pylint.similarities -# Comments are removed from the similarity computation -ignore-comments = true -# Docstrings are removed from the similarity computation -ignore-docstrings = true -# Imports are removed from the similarity computation -ignore-imports = true -# Signatures are removed from the similarity computation -ignore-signatures = true -# Minimum lines number of a similarity. -min-similarity-lines = 4 - -[tool.pylint.spelling] # ANCHOR: tool.pylint.spelling -# Limits count of emitted suggestions for spelling mistakes. -max-spelling-suggestions = 4 -# Spelling dictionary name. Available dictionaries: none. To make it work, -# install the 'python-enchant' package. -# spelling-dict = -# List of comma separated words that should be considered directives if they -# appear at the beginning of a comment and should not be checked. -spelling-ignore-comment-directives = "fmt: on,fmt: off,noqa:,noqa,nosec,isort:skip,mypy:" - -# List of comma separated words that should not be checked. -# spelling-ignore-words = -# A path to a file that contains the private dictionary; one word per line. -# spelling-private-dict-file = -# Tells whether to store unknown words to the private dictionary (see the -# --spelling-private-dict-file option) instead of raising a message. -# spelling-store-unknown-words = -[tool.pylint.string] # ANCHOR: tool.pylint.string -# This flag controls whether inconsistent-quotes generates a warning when the -# character used as a quote delimiter is used inconsistently within a module. -check-quote-consistency = true -# This flag controls whether the implicit-str-concat should generate a warning on -# implicit string concatenation in sequences defined over several lines. -check-str-concat-over-line-jumps = true - -[tool.pylint.typecheck] # ANCHOR: tool.pylint.typecheck -# List of decorators that produce context managers, such as -# contextlib.contextmanager. Add to this list to register other decorators that -# produce valid context managers. -contextmanager-decorators = ["contextlib.contextmanager"] -# List of members which are set dynamically and missed by pylint inference -# system, and so shouldn't trigger E1101 when accessed. Python regular -# expressions are accepted. -generated-members = "" -# Tells whether missing members accessed in mixin class should be ignored. A -# class is considered mixin if its name matches the mixin-class-rgx option. -# Tells whether to warn about missing members when the owner of the attribute is -# inferred to be None. -ignore-none = true -# This flag controls whether pylint should warn about no-member and similar -# checks whenever an opaque object is returned when inferring. The inference can -# return multiple potential results while evaluating a Python object, but some -# branches might not be evaluated, which results in partial inference. In that -# case, it might be useful to still emit no-member and other checks for the rest -# of the inferred objects. -ignore-on-opaque-inference = true -# List of symbolic message names to ignore for Mixin members. -ignored-checks-for-mixins = [ - "no-member", - "not-async-context-manager", - "not-context-manager", - "attribute-defined-outside-init", -] -# List of class names for which member attributes should not be checked (useful -# for classes with dynamically set attributes). This supports the use of -# qualified names. -ignored-classes = [ - "optparse.Values", - "thread._local", - "_thread._local", - "argparse.Namespace", - "_HookRelay", -] -# Show a hint with possible names when a member name was not found. The aspect of -# finding the hint is based on edit distance. -missing-member-hint = true -# The minimum edit distance a name should have in order to be considered a -# similar match for a missing member name. -missing-member-hint-distance = 1 -# The total number of similar names that should be taken in consideration when -# showing a hint for a missing member. -missing-member-max-choices = 1 -# Regex pattern to define which classes are considered mixins. -mixin-class-rgx = ".*[Mm]ixin" - -# List of decorators that change the signature of a decorated function. -# signature-mutators = -[tool.pylint.variables] # ANCHOR: tool.pylint.variables -# List of additional names supposed to be defined in builtins. Remember that you -# should avoid defining new builtins when possible. -# additional-builtins = -# Tells whether unused global variables should be treated as a violation. -allow-global-unused-variables = true -# List of names allowed to shadow builtins -# allowed-redefined-builtins = -# List of strings which can identify a callback function by name. A callback name -# must start or end with one of those strings. -callbacks = ["cb_", "_cb"] -# A regular expression matching the name of dummy variables (i.e. expected to not -# be used). -dummy-variables-rgx = "_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_" -# Argument names that match this expression will be ignored. Default to name with -# leading underscore. -ignored-argument-names = "_.*|^ignored_|^unused_" -# Tells whether we should check for unused import in __init__ files. -# init-import = -# List of qualified module names which can have objects that can redefine -# builtins. -redefining-builtins-modules = [ - "six.moves", - "past.builtins", - "future.builtins", - "builtins", - "io", -] diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index f8f5008..2416405 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -194,15 +194,11 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return rho2a # type: ignore -# pylint: disable=line-too-long -# -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ -# -# pylint: disable=line-too-long +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa {% if not disable_jit %}@jit(forceobj=True) {% endif %}def optimize_d_fs( From 1df040454fb600781f94a923211f4978da1a0401 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 6 Mar 2023 02:11:35 +0100 Subject: [PATCH 051/227] Fix issues in code detected by ruff --- .gitignore | 1 + .pre-commit-config.yaml | 16 +- .vscode/dictionary.txt | 7 + .vscode/settings.json | 4 +- cssfinder/__init__.py | 4 +- cssfinder/__main__.py | 28 + cssfinder/algorithm/backend/__init__.py | 14 +- cssfinder/algorithm/backend/base.py | 26 +- .../algorithm/backend/numpy/_impl/__init__.py | 3 +- .../backend/numpy/_impl/_complex128.py | 75 +- .../backend/numpy/_impl/_complex64.py | 75 +- cssfinder/algorithm/backend/numpy/base.py | 77 +- .../algorithm/backend/numpy/complex128.py | 9 +- .../algorithm/backend/numpy/complex64.py | 9 +- cssfinder/algorithm/backend/numpy/impl.py | 38 +- cssfinder/algorithm/gilbert.py | 51 +- cssfinder/api.py | 29 +- cssfinder/base_model.py | 10 +- cssfinder/cli.py | 173 +- cssfinder/constants.py | 56 +- cssfinder/cssfproject.py | 139 +- cssfinder/enums.py | 9 +- cssfinder/hooks.py | 13 +- cssfinder/io/asset_loader.py | 91 +- cssfinder/io/matrix.py | 45 +- cssfinder/io/output_loader.py | 15 +- cssfinder/log.py | 151 +- cssfinder/report.py | 272 +- examples/5qubits/cssfproject.py | 27 +- profiling/dataset_64_64/dataset_64_64_in.mtx | 4099 ----------------- profiling/fsqn_64_64.py | 26 - pyproject.toml | 502 +- scripts/__init__.py | 23 + scripts/gen_numpy_impl.py | 28 +- scripts/templates/numpy.pyjinja2 | 59 +- 35 files changed, 1519 insertions(+), 4685 deletions(-) create mode 100644 cssfinder/__main__.py mode change 100644 => 100755 cssfinder/log.py delete mode 100644 profiling/dataset_64_64/dataset_64_64_in.mtx delete mode 100644 profiling/fsqn_64_64.py create mode 100644 scripts/__init__.py diff --git a/.gitignore b/.gitignore index fee0548..18447bd 100644 --- a/.gitignore +++ b/.gitignore @@ -941,3 +941,4 @@ typechecking/ \#* \#*/ *.env +.ruff_cache diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 265b303..1c854c3 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -10,6 +10,10 @@ repos: "#", -d, cssfinder, + -d, + scripts, + -d, + examples, -g, "*.py", -g, @@ -36,7 +40,16 @@ repos: hooks: - id: docformatter args: - [--in-place, -r, --wrap-summaries, "88", --wrap-descriptions, "88"] + [ + --in-place, + -r, + --wrap-summaries, + "88", + --wrap-descriptions, + "88", + "--close-quotes-on-newline", + "--blank", + ] - repo: https://github.com/pre-commit/mirrors-prettier rev: "v2.7.1" @@ -82,3 +95,4 @@ repos: rev: "v0.0.254" hooks: - id: ruff + args: ["--fix"] diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index 9846f3c..8ee827e 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -1,13 +1,18 @@ +arange astype biseparable cssfinder cssfproject dtype +figheight figsize +figwidth forceobj jsonref Krzysztof +levelname looplift +matplotlib mmread mmwrite ndarray @@ -16,11 +21,13 @@ nopython numba numpy pydantic +pyplot qubits savefig scipy swapaxes tensordot +tracebacks Wiśniewski xlabel ylabel diff --git a/.vscode/settings.json b/.vscode/settings.json index 19ea955..60ca70d 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -49,7 +49,7 @@ "python.analysis.diagnosticMode": "workspace", "explorer.copyRelativePathSeparator": "/", "C_Cpp.preferredPathSeparator": "Forward Slash", - "python.analysis.typeCheckingMode": "basic", + "python.analysis.typeCheckingMode": "off", "python.analysis.inlayHints.functionReturnTypes": true, "python.analysis.packageIndexDepths": [ { @@ -68,7 +68,7 @@ { "name": "numpy", "depth": 4 - }, + } ], "python.analysis.autoImportCompletions": true, "python.analysis.completeFunctionParens": false, diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index b3818d4..db71ee2 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -20,7 +20,9 @@ """CSSFinder (Closest Separable State Finder) is a package containing implementation of -Gilbert algorithm.""" +Gilbert algorithm for finding an upper bound on the Hilbert-Schmidt distance between a +given state and the set of separable states. +""" from __future__ import annotations diff --git a/cssfinder/__main__.py b/cssfinder/__main__.py new file mode 100644 index 0000000..267d6ed --- /dev/null +++ b/cssfinder/__main__.py @@ -0,0 +1,28 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Entry point of cssfinder package.""" + +from __future__ import annotations + +from cssfinder.cli import main + +if __name__ == "__main__": + main() diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 94c595c..8441667 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -20,20 +20,23 @@ """Backend is an implementation of Gilbert algorithm implemented with specific tools and -supporting various precisions of operation.""" +supporting various precisions of operation. +""" from __future__ import annotations -from typing import Type +from typing import TYPE_CHECKING -from cssfinder.algorithm.backend.base import BackendBase from cssfinder.algorithm.backend.numpy.complex64 import NumPyC64 from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 from cssfinder.cssfproject import Backend, Precision +if TYPE_CHECKING: + from cssfinder.algorithm.backend.base import BackendBase -def new(backend: Backend, precision: Precision) -> Type[BackendBase]: + +def new(backend: Backend, precision: Precision) -> type[BackendBase]: """Select one of the backends with fixed precision.""" if backend == Backend.NumPy: if precision == Precision.DOUBLE: @@ -41,9 +44,10 @@ def new(backend: Backend, precision: Precision) -> Type[BackendBase]: if precision == Precision.SINGLE: return NumPyC64 - raise UnsupportedBackendError( + reason = ( f"Backend {backend.name!r} with precision {precision.name!r} not supported." ) + raise UnsupportedBackendError(reason) class UnsupportedBackendError(Exception): diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index 3eb81cc..4cb7333 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -19,19 +19,21 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains base class for creating Gilbert algorithm backends (concrete -implementations) and exceptions which are expected to be raised from backends.""" +"""Module contains base class for creating Gilbert algorithm backends (concrete +implementations) and exceptions which are expected to be raised from backends. +""" from __future__ import annotations -from typing import Type, TypeVar +from typing import TYPE_CHECKING, TypeVar -import numpy as np -import numpy.typing as npt +if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt -from cssfinder.cssfproject import AlgoMode, Backend, Precision -from cssfinder.io.asset_loader import State + from cssfinder.cssfproject import AlgoMode, Backend, Precision + from cssfinder.io.asset_loader import State BackendT = TypeVar("BackendT", bound="BackendBase") @@ -39,7 +41,7 @@ class BackendBase: """Gilbert algorithm backend (implementation).""" - backend_index: dict[tuple[Backend, Precision], Type[BackendBase]] = {} + backend_index: dict[tuple[Backend, Precision], type[BackendBase]] = {} def __init__( self, @@ -57,18 +59,18 @@ def __init__( @property def state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" - raise NotImplementedError() + raise NotImplementedError @property def corrections(self) -> list[tuple[int, int, float]]: """Return list of all corrections found during optimization.""" - raise NotImplementedError() + raise NotImplementedError @property def corrections_count(self) -> int: """Return number of all corrections found during optimization.""" - raise NotImplementedError() + raise NotImplementedError def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" - raise NotImplementedError() + raise NotImplementedError diff --git a/cssfinder/algorithm/backend/numpy/_impl/__init__.py b/cssfinder/algorithm/backend/numpy/_impl/__init__.py index 4ed7288..d9f1bd1 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/__init__.py +++ b/cssfinder/algorithm/backend/numpy/_impl/__init__.py @@ -20,7 +20,8 @@ """Groups modules containing implementation of Gilbert algorithm utilities with -different precisions.""" +different precisions. +""" from __future__ import annotations diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 6ade2e7..a94f89f 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -27,21 +27,27 @@ # # # ------------------------------------------------------------------------------------ # # -"""This module contains implementation of backend operations in numpy. +"""Module contains implementation of backend operations in numpy. Spec ---- - Floating precision: np.float64 - Complex precision: np.complex128 + """ from __future__ import annotations +from typing import TYPE_CHECKING + import numpy as np -import numpy.typing as npt from numba import jit +if TYPE_CHECKING: + import numpy.typing as npt + + # █████ ██████ ███ ███ ███ ███ ██████ ███ ██ # ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ # ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ @@ -59,56 +65,51 @@ def product( matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] ) -> np.float64: """Calculate scalar product of two matrices.""" - retval = np.trace(np.dot(matrix1, matrix2)).real - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex128]: """Generate a random vector with Haar measure.""" - - real = np.random.uniform(0, 1, depth) - imag = np.random.uniform(0, 1, depth) + real = np.random.uniform(0, 1, depth) # noqa: NPY002 + imag = np.random.uniform(0, 1, depth) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Generate multiple random vectors with Haar measure in form of matrix.""" - - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) + real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 + imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Normalization of a vector.""" - + """Normalize a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) val = np.sqrt(np.real(mtx2)) retval = mtx / val - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: """Build a projection from a vector.""" - retval = np.outer(mtx1, np.conj(mtx1)) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -116,7 +117,6 @@ def kronecker( mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: """Kronecker Product.""" - ddd1 = len(mtx) ddd2 = len(mtx1) @@ -128,7 +128,7 @@ def kronecker( retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -136,19 +136,18 @@ def rotate( rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: """Sandwich an operator with a unitary.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - return rho2a # type: ignore + return rho2a # type: ignore[no-any-return] -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 @jit(forceobj=True) @@ -160,7 +159,6 @@ def optimize_d_fs( epochs: int, ) -> npt.NDArray[np.complex128]: """Optimize implementation for FSnQd mode.""" - product_2_3 = product(new_state, visibility_state) # To make sure rotated_2 is not unbound @@ -186,7 +184,7 @@ def optimize_d_fs( product_rot2_3 = product(rotated_2, visibility_state) - return rotated_2.astype(np.complex128, copy=False) # type: ignore + return rotated_2.astype(np.complex128, copy=False) # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -198,7 +196,7 @@ def random_unitary_d_fs( mtx = expand_d_fs(value, depth, quantity, idx) - return mtx # type: ignore + return mtx # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -211,7 +209,7 @@ def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex128]: value = np.add(rand_mul, identity_mtx) - return value # type: ignore + return value # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -227,7 +225,7 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: vector = project(vector) - return vector # type: ignore + return vector # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -238,7 +236,6 @@ def expand_d_fs( idx: int, ) -> npt.NDArray[np.complex128]: """Expand an operator to n quDits.""" - depth_1 = int(depth**idx) identity_1 = np.identity(depth_1, dtype=np.complex128) @@ -249,7 +246,7 @@ def expand_d_fs( kronecker_2 = kronecker(kronecker_1, identity_2) - return kronecker_2 # type: ignore + return kronecker_2 # type: ignore[no-any-return] # ██████ ███████ ███ ███ ██████ ██████ ███████ @@ -271,13 +268,12 @@ def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: vector = project(vector) - return vector # type: ignore + return vector # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) random_matrix = project(random_vector) @@ -290,13 +286,12 @@ def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: retval = kronecker(unitary_biseparable, identity_quantity) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) random_matrix = project(random_vector) @@ -309,7 +304,7 @@ def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.compl retval = kronecker(identity_quantity, unitary_biseparable) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(forceobj=True) @@ -320,7 +315,7 @@ def optimize_bs( quantity: int, updates_count: int, ) -> npt.NDArray[np.complex128]: - """Runs the minimization algorithm to optimize the biseparable state. + """Run the minimization algorithm to optimize the biseparable state. Parameters ---------- @@ -339,8 +334,8 @@ def optimize_bs( ------- npt.NDArray[np.complex128] Optimized state. - """ + """ pp1 = product(new_state, visibility_state) return_state = new_state.copy() diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 7c26f28..1dab235 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -27,21 +27,27 @@ # # # ------------------------------------------------------------------------------------ # # -"""This module contains implementation of backend operations in numpy. +"""Module contains implementation of backend operations in numpy. Spec ---- - Floating precision: np.float32 - Complex precision: np.complex64 + """ from __future__ import annotations +from typing import TYPE_CHECKING + import numpy as np -import numpy.typing as npt from numba import jit +if TYPE_CHECKING: + import numpy.typing as npt + + # █████ ██████ ███ ███ ███ ███ ██████ ███ ██ # ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ # ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ @@ -59,60 +65,55 @@ def product( matrix1: npt.NDArray[np.complex64], matrix2: npt.NDArray[np.complex64] ) -> np.float32: """Calculate scalar product of two matrices.""" - retval = np.trace(np.dot(matrix1, matrix2)).real - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex64]: """Generate a random vector with Haar measure.""" - - real = np.random.uniform(0, 1, depth) - imag = np.random.uniform(0, 1, depth) + real = np.random.uniform(0, 1, depth) # noqa: NPY002 + imag = np.random.uniform(0, 1, depth) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) retval = (retval).astype(np.complex64) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Generate multiple random vectors with Haar measure in form of matrix.""" - - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) + real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 + imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) retval = (retval).astype(np.complex64) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Normalization of a vector.""" - + """Normalize a vector.""" mtx2 = np.dot(mtx, np.conj(mtx)) val = np.sqrt(np.real(mtx2)) retval = mtx / val - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: """Build a projection from a vector.""" - retval = np.outer(mtx1, np.conj(mtx1)) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -120,7 +121,6 @@ def kronecker( mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] ) -> npt.NDArray[np.complex64]: """Kronecker Product.""" - ddd1 = len(mtx) ddd2 = len(mtx1) @@ -132,7 +132,7 @@ def kronecker( retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -140,19 +140,18 @@ def rotate( rho2: npt.NDArray[np.complex64], unitary: npt.NDArray[np.complex64] ) -> npt.NDArray[np.complex64]: """Sandwich an operator with a unitary.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - return rho2a # type: ignore + return rho2a # type: ignore[no-any-return] -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 @jit(forceobj=True) @@ -164,7 +163,6 @@ def optimize_d_fs( epochs: int, ) -> npt.NDArray[np.complex64]: """Optimize implementation for FSnQd mode.""" - product_2_3 = product(new_state, visibility_state) # To make sure rotated_2 is not unbound @@ -190,7 +188,7 @@ def optimize_d_fs( product_rot2_3 = product(rotated_2, visibility_state) - return rotated_2.astype(np.complex64, copy=False) # type: ignore + return rotated_2.astype(np.complex64, copy=False) # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -202,7 +200,7 @@ def random_unitary_d_fs( mtx = expand_d_fs(value, depth, quantity, idx) - return mtx # type: ignore + return mtx # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -215,7 +213,7 @@ def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex64]: value = np.add(rand_mul, identity_mtx) - return value # type: ignore + return value # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) @@ -231,7 +229,7 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: vector = project(vector) - return vector # type: ignore + return vector # type: ignore[no-any-return] @jit(forceobj=True, cache=True) @@ -242,7 +240,6 @@ def expand_d_fs( idx: int, ) -> npt.NDArray[np.complex64]: """Expand an operator to n quDits.""" - depth_1 = int(depth**idx) identity_1 = np.identity(depth_1, dtype=np.complex64) @@ -253,7 +250,7 @@ def expand_d_fs( kronecker_2 = kronecker(kronecker_1, identity_2) - return kronecker_2 # type: ignore + return kronecker_2 # type: ignore[no-any-return] # ██████ ███████ ███ ███ ██████ ██████ ███████ @@ -275,13 +272,12 @@ def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: vector = project(vector) - return vector # type: ignore + return vector # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) random_matrix = project(random_vector) @@ -294,13 +290,12 @@ def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: retval = kronecker(unitary_biseparable, identity_quantity) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(nopython=True, nogil=True, cache=True) def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) random_matrix = project(random_vector) @@ -313,7 +308,7 @@ def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.compl retval = kronecker(identity_quantity, unitary_biseparable) - return retval # type: ignore + return retval # type: ignore[no-any-return] @jit(forceobj=True) @@ -324,7 +319,7 @@ def optimize_bs( quantity: int, updates_count: int, ) -> npt.NDArray[np.complex64]: - """Runs the minimization algorithm to optimize the biseparable state. + """Run the minimization algorithm to optimize the biseparable state. Parameters ---------- @@ -343,8 +338,8 @@ def optimize_bs( ------- npt.NDArray[np.complex64] Optimized state. - """ + """ pp1 = product(new_state, visibility_state) return_state = new_state.copy() diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index d65c66e..d27cf0c 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -19,22 +19,25 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains numpy based implementation of Gilbert algorithm but not bound to -specific precision.""" +"""Module contains numpy based implementation of Gilbert algorithm but not bound to +specific precision. +""" from __future__ import annotations from types import MethodType -from typing import Generic, Type, TypeVar, cast +from typing import TYPE_CHECKING, Generic, TypeVar, cast import numpy as np import numpy.typing as npt from numba import jit from cssfinder.algorithm.backend.base import BackendBase -from cssfinder.algorithm.backend.numpy.impl import Implementation from cssfinder.cssfproject import AlgoMode -from cssfinder.io.asset_loader import State + +if TYPE_CHECKING: + from cssfinder.algorithm.backend.numpy.impl import Implementation + from cssfinder.io.asset_loader import State PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) @@ -50,8 +53,8 @@ class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): _corrections: list[tuple[int, int, float]] impl: Implementation[PRIMARY, SECONDARY_co] - primary_t: Type[PRIMARY] - secondary_t: Type[SECONDARY_co] + primary_t: type[PRIMARY] + secondary_t: type[SECONDARY_co] def __init__( self, @@ -68,16 +71,20 @@ def __init__( self._corrections = [] self._aa4: SECONDARY_co = 2 * self.impl.product( - self._visibility, self._intermediate + self._visibility, + self._intermediate, ) self._aa6: SECONDARY_co = self.impl.product( - self._intermediate, self._intermediate + self._intermediate, + self._intermediate, ) self._visibility_reduced = cast( - npt.NDArray[PRIMARY], (self._visibility - self._intermediate) + npt.NDArray[PRIMARY], + (self._visibility - self._intermediate), ) self._dd1: SECONDARY_co = self.impl.product( - self._intermediate, self._visibility_reduced + self._intermediate, + self._visibility_reduced, ) if not self.is_debug: @@ -85,27 +92,31 @@ def __init__( def jit(self) -> None: """JIT compile performance critical parts of backend with numba.""" - _update_state = jit( # type: ignore - forceobj=True, cache=True, looplift=False, inline="always" + _update_state = jit( # type: ignore[assignment] + forceobj=True, + cache=True, + looplift=False, + inline="always", )( - self.__class__._update_state # pylint: disable=protected-access + self.__class__._update_state, # noqa: SLF001 ) - setattr(self, "_update_state", MethodType(_update_state, self)) + self._update_state = MethodType(_update_state, self) # type: ignore[assignment] run_epoch = jit(forceobj=True, cache=True, looplift=False)( - self.__class__.run_epoch + self.__class__.run_epoch, ) - setattr(self, "run_epoch", MethodType(run_epoch, self)) + self.run_epoch = MethodType(run_epoch, self) # type: ignore[assignment] def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: vis_state = self.visibility * self.initial.state inv_vis_ident = (1 - self.visibility) * np.identity( - len(self.initial.state), dtype=np.complex128 + len(self.initial.state), + dtype=np.complex128, ) return (vis_state + inv_vis_ident / len(self.initial.state)).astype( - self.primary_t + self.primary_t, ) def _create_intermediate_state(self) -> npt.NDArray[PRIMARY]: @@ -130,7 +141,6 @@ def corrections_count(self) -> int: def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" - depth = self.initial.depth quantity = self.initial.quantity epochs = 20 * depth * depth * quantity @@ -148,10 +158,14 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: > self._dd1 ): self._update_state( - alternative_state, iterations, epoch_index, epochs, iteration_index + alternative_state, + iterations, + epoch_index, + epochs, + iteration_index, ) - def _update_state( + def _update_state( # noqa: PLR0913 self, alternative_state: npt.NDArray[PRIMARY], iterations: int, @@ -164,11 +178,19 @@ def _update_state( if self.mode == AlgoMode.FSnQd: alternative_state = self.impl.optimize_d_fs( - alternative_state, self._visibility_reduced, depth, quantity, epochs + alternative_state, + self._visibility_reduced, + depth, + quantity, + epochs, ) elif self.mode == AlgoMode.SBiPa: alternative_state = self.impl.optimize_bs( - alternative_state, self._visibility_reduced, depth, quantity, epochs + alternative_state, + self._visibility_reduced, + depth, + quantity, + epochs, ) else: raise TypeError(self.mode) @@ -188,7 +210,8 @@ def _update_state( ) self._visibility_reduced = cast( - npt.NDArray[PRIMARY], (self._visibility - self._intermediate) + npt.NDArray[PRIMARY], + (self._visibility - self._intermediate), ) self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) self._aa6 = self.impl.product(self._intermediate, self._intermediate) @@ -202,7 +225,7 @@ def _update_state( self.impl.product( self._visibility_reduced, self._visibility_reduced, - ) + ), ), - ) + ), ) diff --git a/cssfinder/algorithm/backend/numpy/complex128.py b/cssfinder/algorithm/backend/numpy/complex128.py index c9badde..002333a 100644 --- a/cssfinder/algorithm/backend/numpy/complex128.py +++ b/cssfinder/algorithm/backend/numpy/complex128.py @@ -23,7 +23,7 @@ from __future__ import annotations -from typing import Type, cast +from typing import cast import numpy as np @@ -36,7 +36,8 @@ class NumPyC128(NumPyBase[np.complex128, np.float64]): """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" impl: Implementation[np.complex128, np.float64] = cast( - Implementation[np.complex128, np.float64], _complex128 + Implementation[np.complex128, np.float64], + _complex128, ) - primary_t: Type[np.complex128] = np.complex128 - secondary_t: Type[np.float64] = np.float64 + primary_t: type[np.complex128] = np.complex128 + secondary_t: type[np.float64] = np.float64 diff --git a/cssfinder/algorithm/backend/numpy/complex64.py b/cssfinder/algorithm/backend/numpy/complex64.py index 86ec288..d14a8f8 100644 --- a/cssfinder/algorithm/backend/numpy/complex64.py +++ b/cssfinder/algorithm/backend/numpy/complex64.py @@ -23,7 +23,7 @@ from __future__ import annotations -from typing import Type, cast +from typing import cast import numpy as np @@ -36,7 +36,8 @@ class NumPyC64(NumPyBase[np.complex64, np.float32]): """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" impl: Implementation[np.complex64, np.float32] = cast( - Implementation[np.complex64, np.float32], _complex64 + Implementation[np.complex64, np.float32], + _complex64, ) - primary_t: Type[np.complex64] = np.complex64 - secondary_t: Type[np.float32] = np.float32 + primary_t: type[np.complex64] = np.complex64 + secondary_t: type[np.float32] = np.float32 diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index 968fdcf..c4cc46e 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -19,16 +19,16 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This file contains declaration of Implementation protocol for numpy based -backends.""" +"""Module contains declaration of Implementation protocol for numpy based backends.""" from __future__ import annotations -from typing import Generic, TypeVar +from typing import TYPE_CHECKING, Generic, Protocol, TypeVar import numpy as np -import numpy.typing as npt -from typing_extensions import Protocol + +if TYPE_CHECKING: + import numpy.typing as npt PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) @@ -45,7 +45,8 @@ class Implementation(Generic[PRIMARY, SECONDARY_co], Protocol): @staticmethod def product( - matrix1: npt.NDArray[PRIMARY], matrix2: npt.NDArray[PRIMARY] + matrix1: npt.NDArray[PRIMARY], + matrix2: npt.NDArray[PRIMARY], ) -> SECONDARY_co: """Calculate scalar product of two matrices.""" ... @@ -62,7 +63,7 @@ def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: @staticmethod def normalize(mtx: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: - """Normalization of a vector.""" + """Normalize a vector.""" ... @staticmethod @@ -72,23 +73,25 @@ def project(mtx1: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: @staticmethod def kronecker( - mtx: npt.NDArray[PRIMARY], mtx1: npt.NDArray[PRIMARY] + mtx: npt.NDArray[PRIMARY], + mtx1: npt.NDArray[PRIMARY], ) -> npt.NDArray[PRIMARY]: """Kronecker Product.""" ... @staticmethod def rotate( - rho2: npt.NDArray[PRIMARY], unitary: npt.NDArray[PRIMARY] + rho2: npt.NDArray[PRIMARY], + unitary: npt.NDArray[PRIMARY], ) -> npt.NDArray[PRIMARY]: """Sandwich an operator with a unitary.""" ... - # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa - # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa - # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa - # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa - # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 + # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 + # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 + # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 + # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 @staticmethod def optimize_d_fs( @@ -103,7 +106,9 @@ def optimize_d_fs( @staticmethod def random_unitary_d_fs( - depth: int, quantity: int, idx: int + depth: int, + quantity: int, + idx: int, ) -> npt.NDArray[PRIMARY]: """N quDits.""" ... @@ -152,7 +157,7 @@ def optimize_bs( quantity: int, updates_count: int, ) -> npt.NDArray[PRIMARY]: - """Runs the minimization algorithm to optimize the biseparable state. + """Run the minimization algorithm to optimize the biseparable state. Parameters ---------- @@ -171,5 +176,6 @@ def optimize_bs( ------- npt.NDArray[np.complex128] Optimized state. + """ ... diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 288b7e6..1bfe45e 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -19,26 +19,28 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains public interface of Gilbert algorithm.""" +"""Module contains public interface of Gilbert algorithm.""" from __future__ import annotations import logging from time import perf_counter -from typing import Callable, Optional - -import numpy as np -import numpy.typing as npt +from typing import TYPE_CHECKING, Callable from cssfinder.algorithm import backend as _backend -from cssfinder.cssfproject import AlgoMode, Backend, Precision -from cssfinder.io.asset_loader import State + +if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt + + from cssfinder.cssfproject import AlgoMode, Backend, Precision + from cssfinder.io.asset_loader import State class Gilbert: """Class interface of gilbert algorithm.""" - def __init__( + def __init__( # noqa: PLR0913 self, initial: State, mode: AlgoMode, @@ -56,11 +58,14 @@ def __init__( backend_type = _backend.new(backend, self.precision) self.backend = backend_type( - self.initial, self.mode, self.visibility, is_debug=self.is_debug + self.initial, + self.mode, + self.visibility, + is_debug=self.is_debug, ) - self._state: Optional[npt.NDArray[np.complex128]] = None - self._corrections: Optional[list[tuple[int, int, float]]] = None + self._state: npt.NDArray[np.complex128] | None = None + self._corrections: list[tuple[int, int, float]] | None = None def run( self, @@ -94,17 +99,17 @@ def run( try: save_state_hook(self._state) - except Exception as exc: + except Exception as exc: # noqa: BLE001 logging.critical("Exception occurred within save_state_hook() call.") - raise SaveStateHookError() from exc + raise SaveStateHookError from exc try: save_corrections_hook(self._corrections) - except Exception as exc: + except Exception as exc: # noqa: BLE001 logging.critical( - "Exception occurred within save_corrections_hook() call." + "Exception occurred within save_corrections_hook() call.", ) - raise SaveCorrectionsHookError() from exc + raise SaveCorrectionsHookError from exc iterations_executed = (epoch_index + 1) * iterations logging.debug( @@ -117,7 +122,8 @@ def run( # Check if we already reached expected number of corrections if self.backend.corrections_count >= max_corrections: logging.info( - "Reached expected maximal number of corrections %r", max_corrections + "Reached expected maximal number of corrections %r", + max_corrections, ) break @@ -128,16 +134,16 @@ def run( def state(self) -> npt.NDArray[np.complex128]: """Returns correction from saturated algorithm.""" if self._state is None: - raise AlgorithmNotSaturatedError("Run algorithm first, to obtain state!") + error_message = "Run algorithm first, to obtain state!" + raise AlgorithmNotSaturatedError(error_message) return self._state @property def corrections(self) -> list[tuple[int, int, float]]: """Returns correction from saturated algorithm.""" if self._corrections is None: - raise AlgorithmNotSaturatedError( - "Run algorithm first to obtain corrections!" - ) + error_message = "Run algorithm first to obtain corrections!" + raise AlgorithmNotSaturatedError(error_message) return self._corrections @@ -147,7 +153,8 @@ class AlgorithmError(Exception): class AlgorithmNotSaturatedError(Exception): """Raised when action was performed on which required algorithm to finish execution - on instance which was not run.""" + on instance which was not run. + """ class HookError(Exception): diff --git a/cssfinder/api.py b/cssfinder/api.py index f8c6f34..5621e2b 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -18,13 +18,12 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains high level API of cssfinder.""" +"""Module contains high level API of cssfinder.""" from __future__ import annotations import logging -from pathlib import Path -from typing import Optional +from typing import TYPE_CHECKING from cssfinder.algorithm.gilbert import Gilbert from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task @@ -37,10 +36,13 @@ display_short_report, ) +if TYPE_CHECKING: + from pathlib import Path + def run_project_from( project_file_path: Path | str, - tasks: Optional[list[str]] = None, + tasks: list[str] | None = None, *, is_debug: bool = False, ) -> None: @@ -56,7 +58,10 @@ def run_project_from( def run_project( - project: CSSFProject, tasks: Optional[list[str]] = None, *, is_debug: bool = False + project: CSSFProject, + tasks: list[str] | None = None, + *, + is_debug: bool = False, ) -> None: """Run all tasks defined in project.""" project.eval_dynamic() @@ -76,7 +81,10 @@ def run_task(task: Task, *, is_debug: bool = False) -> None: def run_gilbert( - config: GilbertCfg, task_output_dir: Path, *, is_debug: bool = False + config: GilbertCfg, + task_output_dir: Path, + *, + is_debug: bool = False, ) -> None: """Run Gilbert algorithm part of task.""" asset_loader = GilbertAssetLoader() @@ -98,14 +106,15 @@ def run_gilbert( max_corrections=config.runtime.max_corrections, save_state_hook=save_matrix_hook(task_output_dir / "state.mtx"), save_corrections_hook=save_corrections_hook( - task_output_dir / "corrections.json" + task_output_dir / "corrections.json", ), ) def create_report_from(project_file_path: Path | str, task: str) -> None: """Load project (`cssfproject.json`) and create report for task selected by - pattern.""" + pattern. + """ project = CSSFProject.load_project(project_file_path) logging.info( "Loaded project %r by %r <%r>.", @@ -118,15 +127,15 @@ def create_report_from(project_file_path: Path | str, task: str) -> None: def create_report(project: CSSFProject, task: str) -> None: """Create report for task selected by pattern from project object.""" - tasks = project.select_tasks([task]) if len(tasks) > 1: matched_tasks_names = [t.name for t in tasks] - raise AmbiguousTaskKeyError( + message = ( f"Pattern {task!r} matches more than one task ({len(tasks)}): " f"{matched_tasks_names!r}" ) + raise AmbiguousTaskKeyError(message) task_object, *_ = tasks diff --git a/cssfinder/base_model.py b/cssfinder/base_model.py index e447ae1..e0ae9b6 100644 --- a/cssfinder/base_model.py +++ b/cssfinder/base_model.py @@ -18,8 +18,9 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains classes deriving from BaseModel used as base classes in -cssfinder code.""" +"""Module contains classes deriving from BaseModel used as base classes in cssfinder +code. +""" from __future__ import annotations @@ -28,9 +29,12 @@ class CommonBaseModel(BaseModel): """Universal base class for most of model classes which contains commonly used model - configuration.""" + configuration. + """ class Config: + """CommonBaseModel behavior configuration.""" + validate_assignment = True extra = Extra.ignore underscore_attrs_are_private = True diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 80fdbdc..48eabdc 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -19,14 +19,12 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains implementation of CSSFinder command line interface.""" +"""Module contains implementation of CSSFinder command line interface.""" from __future__ import annotations import logging from dataclasses import dataclass -from pathlib import Path -from typing import Optional import click import pendulum @@ -35,19 +33,21 @@ from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError from cssfinder.api import AmbiguousTaskKeyError, create_report_from, run_project_from from cssfinder.cssfproject import ( - InvalidCSSFProjectContent, + InvalidCSSFProjectContentError, MalformedProjectFileError, - ProjectFileNotFound, + ProjectFileNotFoundError, ) from cssfinder.log import configure_logger +VERBOSITY_INFO: int = 2 + @dataclass class Ctx: """Command line context wrapper class.""" is_debug: bool = False - project_path: Optional[str] = None + project_path: str | None = None @click.group(invoke_without_command=True, no_args_is_help=True) @@ -62,7 +62,7 @@ class Ctx: ) @click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") @click.option("--debug", is_flag=True, default=False) -def main(ctx: click.Context, verbose: int, debug: bool) -> None: +def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: """CSSFinder is a script for finding closest separable states.""" ctx.obj = Ctx(is_debug=debug) @@ -70,7 +70,7 @@ def main(ctx: click.Context, verbose: int, debug: bool) -> None: logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %r", pendulum.now()) - if verbose >= 2: + if verbose >= VERBOSITY_INFO: print( """ ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ @@ -79,7 +79,7 @@ def main(ctx: click.Context, verbose: int, debug: bool) -> None: ██║ ╚════██║╚════██║██╔══╝ ██║██║╚██╗██║██║ ██║██╔══╝ ██╔══██╗ ╚██████╗███████║███████║██║ ██║██║ ╚████║██████╔╝███████╗██║ ██║ ╚═════╝╚══════╝╚══════╝╚═╝ ╚═╝╚═╝ ╚═══╝╚═════╝ ╚══════╝╚═╝ ╚═╝ -""" +""", ) @@ -98,40 +98,37 @@ def _project(ctx: click.Context, path: str) -> None: help="Use to specify names of tasks to run. When omitted, all tasks are executed.", ) @click.pass_obj -def _run(ctx: Ctx, tasks: Optional[list[str]]) -> None: +def _run(ctx: Ctx, tasks: list[str] | None) -> None: """Run tasks from the project.""" - if not tasks: tasks = None if ctx.project_path is None: - raise RuntimeError("ctx.project_path shall not be None.") + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) try: run_project_from(ctx.project_path, tasks, is_debug=ctx.is_debug) - except ProjectFileNotFound as exc: + except ProjectFileNotFoundError as exc: logging.critical("Project file not found. %s", exc.args[0]) raise SystemExit(300_000) from exc except MalformedProjectFileError as exc: - logging.critical( - "Project file content is not a valid JSON file. Fix it and try again." - ) + logging.critical("Couldn't parse `cssfproject.json` file.") + logging.critical(exc) raise SystemExit(301_000) from exc - except InvalidCSSFProjectContent as exc: + except InvalidCSSFProjectContentError as exc: logging.critical("Project file doesn't contain valid project configuration.") logging.critical("Fix it and try again.") raise SystemExit(302_000) from exc - except SaveStateHookError as exc: - logging.exception(exc) - raise SystemExit(303_000) from exc + except SaveStateHookError: + _log_exit(303_000) - except SaveCorrectionsHookError as exc: - logging.exception(exc) - raise SystemExit(303_000) from exc + except SaveCorrectionsHookError: + _log_exit(304_000) raise SystemExit(0) @@ -141,10 +138,11 @@ def _run(ctx: Ctx, tasks: Optional[list[str]]) -> None: "task", ) @click.pass_obj -def _task_report(path: Path, task: str) -> None: +def _task_report(path: str, task: str) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. + """ try: create_report_from(path, task) @@ -154,127 +152,6 @@ def _task_report(path: Path, task: str) -> None: raise SystemExit(304_00) from exc -@main.command() -@click.argument( - "mode", - type=click.Choice(["FSNQ", "FSNQ+", "SBS", "G3PE3Q", "G4PE3Q"]), -) -@click.option( - "-i", - "--input", - "input_dir", - required=True, - type=click.Path(exists=True, file_okay=False, dir_okay=True, resolve_path=True), - help="See INPUT section.", -) -@click.option( - "--vis", - type=float, - required=True, - help="visibility against white noise. Between 0 and 1. To be used when the " - "algorithm is stuck.", -) -@click.option( - "--steps", - type=int, - required=True, - help="Number of attempts to correct the closest separable state. A negative " - "number adds its value to pre-existing list of results. Rounded down to a " - "multiple of 10.", -) -@click.option( - "--cors", - type=int, - required=True, - help="Maximal number of corrections to the closest separable state. A " - "negative number adds its value to pre-existing list of results. " - "Rounded down to a multiple of 50", -) -@click.option( - "-o", - "--output", - required=False, - default=(Path.cwd() / "out").as_posix(), - help="Path to directory to put output files in.", -) -@click.option( - "-s", - "--size", - type=int, - default=None, - help="Size of system", -) -@click.option( - "-n", - "--sub-sys-size", - type=int, - default=None, - help="Size of each subsystems", -) -@click.option( - "-t", - "--type", - "data_type", - default="complex", - type=click.Choice(["complex", "real", "int"]), -) -def file( # pylint: disable=too-many-arguments - vis: float, - steps: int, - cors: int, - mode: str, - input_dir: str, - output: Optional[str], - size: Optional[str], - sub_sys_size: Optional[str], - data_type: str, -) -> None: - """ - \b - MODE: - FSNQ - full separability of an n-quDit state. - FSNQ+ - full separability of an n-quDit state (d1 optional and can be - arbitrary). - SBS - separability of a bipartite state. - G3PE3Q - genuine 3-partite entanglement of a 3-quDit state - G4PE3Q - genuine 4-partite entanglement of a 3-quDit state - - \b - INPUT: - Path to the directory containing input files, folder should be named with - prefix used by input files inside. All files are expected to be in - Matrix Market exchange format. - Files which can be included: - - {prefix}_in.mtx - the input state. (Required) - - {prefix}_sym_0_0.mtx,{prefix}_sym_0_1.mtx,... - (Optional) - symmetry unitaries applied to the output state. The first number - following the prefix is the symmetry label, the second is the manifold. - - {prefix}_proj.mtx - (Optional) projections applied to the output state. - - \b - Output: - ------- - If these files exist, the program will resume from the last record: - - prefix_mode_d1_out_vis.mtx: final separable state (can be used as an - initial separable state) - - prefix_mode_d1_list_vis.mtx: number of steps, corrections, and the - squared HS distance every 50 corrections - - - prefix_report_mode_d1_vis.txt: The report file. - - prefix_abort.txt: The error message if the algorithm was extremely slow - (for some highly entangled states). - """ - - # String formatting reference: https://peps.python.org/pep-3101/ - logging.debug("INPUT PARAMETERS") - logging.debug("================") - logging.debug(" vis = {0!r}", vis) - logging.debug(" steps = {0!r}", steps) - logging.debug(" cors = {0!r}", cors) - logging.debug(" mode = {0!r}", mode) - logging.debug(" input = {0!r}", input_dir) - logging.debug(" output = {0!r}", output) - logging.debug(" size = {0!r}", size) - logging.debug(" sub_sys_size = {0!r}", sub_sys_size) - - raise NotImplementedError(data_type) +def _log_exit(code: int) -> None: + logging.exception("Exit with code code.") + raise SystemExit(code) diff --git a/cssfinder/constants.py b/cssfinder/constants.py index 13f6126..8ee0c76 100644 --- a/cssfinder/constants.py +++ b/cssfinder/constants.py @@ -19,7 +19,7 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains generic global constants.""" +"""Module contains helper global constants.""" from __future__ import annotations @@ -27,33 +27,33 @@ # fmt: off PRIMES = np.array([ - 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, # noqa - 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, # noqa - 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, # noqa - 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, # noqa - 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, # noqa - 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, # noqa - 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, # noqa - 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, # noqa - 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, # noqa - 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, # noqa - 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, # noqa - 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, # noqa - 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, # noqa - 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, # noqa - 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, # noqa - 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, # noqa - 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, # noqa - 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, # noqa - 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, # noqa - 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, # noqa - 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, # noqa - 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, # noqa - 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, # noqa - 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, # noqa - 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, # noqa - 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, # noqa - 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, # noqa + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, # noqa: E501 + 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, # noqa: E501 + 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, # noqa: E501 + 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, # noqa: E501 + 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, # noqa: E501 + 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, # noqa: E501 + 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, # noqa: E501 + 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, # noqa: E501 + 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, # noqa: E501 + 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, # noqa: E501 + 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, # noqa: E501 + 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, # noqa: E501 + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, # noqa: E501 + 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, # noqa: E501 + 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, # noqa: E501 + 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, # noqa: E501 + 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, # noqa: E501 + 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, # noqa: E501 + 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, # noqa: E501 + 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, # noqa: E501 + 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, # noqa: E501 + 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, # noqa: E501 + 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, # noqa: E501 + 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, # noqa: E501 + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, # noqa: E501 + 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, # noqa: E501 + 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, # noqa: E501 1973, 1979, 1987, 1993, 1997, 1999, ], dtype=np.int64) # fmt: on diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 240bce5..99509f7 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -23,15 +23,17 @@ parameters used by gilbert algorithm. This file contains implementation of project configuration in 1.0.0 version. + """ from __future__ import annotations import fnmatch +import json import logging from pathlib import Path -from typing import TYPE_CHECKING, Any, Iterable, Optional +from typing import TYPE_CHECKING, Any, Iterable import jsonref from pydantic import ConstrainedStr, EmailStr, Field, validator @@ -52,25 +54,44 @@ class CSSFProject(CommonBaseModel): tasks: dict[str, Task] """List of tasks within project which can be executed.""" - _file: Optional[Path] = None + _file: Path | None = None """Path to loaded project file.""" _is_evaluated: bool = False def __init__( - self, meta: Meta, tasks: list[Task] | dict[str, Task], *_: Any, **_k: Any + self, + meta: Meta, + tasks: list[Task] | dict[str, Task], + *_: Any, + **_k: Any, ) -> None: + """Initialize instance. + + extra args and kwargs are ignored. + + """ super().__init__(meta=meta, tasks=tasks) @validator("tasks", pre=True, always=True) @classmethod def _validate_tasks( - cls, value: Iterable[dict[str, Any]] | dict[str, dict[str, Any]] + cls, + value: Iterable[dict[str, Any]] | dict[str, dict[str, Any] | Any], ) -> dict[str, dict[str, Any]]: if isinstance(value, dict): - assert all(isinstance(v, dict) for v in value.values()) + for k, v in value.items(): + if not isinstance(v, dict): + error_message = f"Incorrect format of Tasks field {k!r}." + raise IncorrectFormatOfTaskFieldError(error_message) + return {str(k): dict(v) for k, v in value.items()} + for i, v in enumerate(value): + if not isinstance(v, dict): + error_message = f"Incorrect format of Tasks field {i!r}." + raise IncorrectFormatOfTaskFieldError(error_message) + return {str(i): t for i, t in enumerate(value)} def eval_dynamic(self) -> None: @@ -105,7 +126,7 @@ def directory(self) -> Path: def output(self) -> Path: """Path to output directory for this project.""" directory = self.directory / "output" - directory.mkdir(0o764, True, True) + directory.mkdir(0o764, parents=True, exists_ok=True) return directory @classmethod @@ -128,8 +149,8 @@ def load_project(cls, file_or_directory: str | Path) -> Self: Raised when project file content is not a dictionary. MalformedProjectFileError When content of project file is not valid json. - """ + """ # Unify path type to Path file_or_directory = Path(file_or_directory).expanduser().resolve() @@ -147,18 +168,17 @@ def load_project(cls, file_or_directory: str | Path) -> Self: try: content = file_path.read_text(encoding="utf-8") except FileNotFoundError as exc: - raise ProjectFileNotFound( - f"Make sure you path is correct: {file_path!r}" - ) from exc + error_message = f"Make sure you path is correct: {file_path!r}" + raise ProjectFileNotFoundError(error_message) from exc try: content = jsonref.loads(content) - except jsonref.JsonRefError as exc: - raise MalformedProjectFileError() from exc + except json.decoder.JSONDecodeError as exc: + raise MalformedProjectFileError(exc.msg, exc.doc, exc.pos) from exc if not isinstance(content, dict): logging.critical("Content of cssfproject.json file is not a dictionary.") - raise InvalidCSSFProjectContent(content) + raise InvalidCSSFProjectContentError(content) project = cls(**content) project.set_file_path(file_path) @@ -166,7 +186,7 @@ def load_project(cls, file_or_directory: str | Path) -> Self: return project - def select_tasks(self, patterns: Optional[list[str]] = None) -> list[Task]: + def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: """Select all tasks matching list of patterns.""" if patterns is None: return list(self.tasks.values()) @@ -179,15 +199,40 @@ def select_tasks(self, patterns: Optional[list[str]] = None) -> list[Task]: return [self.tasks[k] for k in keys] -class InvalidCSSFProjectContent(ValueError): +class InvalidCSSFProjectContentError(ValueError): """Raised by load_from() when file content is not a dictionary.""" -class MalformedProjectFileError(ValueError): +class IncorrectFormatOfTaskFieldError(ValueError): + """Raised when "tasks" field contains incorrectly specified tasks.""" + + +class MalformedProjectFileError(json.decoder.JSONDecodeError): """Rased when project file content can't be correctly decoded.""" + def __str__(self) -> str: + """Convert exception to readable error explanation.""" + p = " " * 4 + line_index = self.lineno + + start_index = line_index - 10 + if start_index < 0: + start_index = 0 + + lines = self.doc.split("\n")[start_index:line_index] + lines_joined = f"{p}\n" + "\n".join( + f"{start_index + i + 1:>4}|{p}{line}" for i, line in enumerate(lines) + ) + ellipsis_line = f"{start_index:>4}|{p}..." if start_index != 0 else "" -class ProjectFileNotFound(FileNotFoundError): + context_header = f"\n\n{ellipsis_line}{lines_joined}" + pointer_line = f"{' ' * 4}{self.colno * ' '}~~~~^^^^^" + + msg = f"{self.msg}: line {self.lineno} column {self.colno} (char {self.pos})" + return f"{context_header}\n{pointer_line}\n{p}{msg}.\n" + + +class ProjectFileNotFoundError(FileNotFoundError): """Raised when project file can't be found in expected place.""" @@ -211,19 +256,19 @@ class Meta(CommonBaseModel): class SemVerStr(ConstrainedStr): - """Semantic versioning string regex, see https://semver.org/""" + """Semantic versioning string regex, see https://semver.org/.""" regex = ( r"^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-]" - + r"[0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(" - + r"[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$" + r"[0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(" + r"[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$" ) class Task(CommonBaseModel): - """This represents algorithm task.""" + """Container representing CSSFinder task with some algorithm.""" - gilbert: Optional[GilbertCfg] = Field(default=None) + gilbert: GilbertCfg | None = Field(default=None) """Configuration of gilbert algorithm.""" _output: Path = Field(default=Path.cwd()) @@ -256,10 +301,11 @@ class GilbertCfg(CommonBaseModel): mode: AlgoMode """Algorithm mode to use.""" - backend: Optional[BackendCfg] = Field(default=None) + backend: BackendCfg | None = Field(default=None) """Configuration of backend which will be used for execution. When backend configuration is not specified, numpy with double precision is used. + """ state: State | str | Path @@ -268,19 +314,19 @@ class GilbertCfg(CommonBaseModel): runtime: RuntimeCfg """Configuration of runtime limits and parameters influencing algorithm run time.""" - resources: Optional[Resources] = Field(default=None) + resources: Resources | None = Field(default=None) """Additional resources which may be used by algorithm.""" @validator("resources", pre=True) @classmethod - def _use_default_resources(cls, value: Optional[Resources]) -> Resources: + def _use_default_resources(cls, value: Resources | None) -> Resources: if value is None: return Resources() return value @validator("backend", pre=True) @classmethod - def _use_default_backend(cls, value: Optional[BackendCfg]) -> BackendCfg: + def _use_default_backend(cls, value: BackendCfg | None) -> BackendCfg: if value is None: return BackendCfg(name=Backend.NumPy, precision=Precision.DOUBLE) return value @@ -288,18 +334,19 @@ def _use_default_backend(cls, value: Optional[BackendCfg]) -> BackendCfg: def get_backend(self) -> BackendCfg: """Return resources object.""" if self.backend is None: - raise TypeError("Missing backend object.") + error_message = "Missing backend object." + raise TypeError(error_message) return self.backend def get_resources(self) -> Resources: """Return resources object.""" if self.resources is None: - raise TypeError("Missing resources object.") + error_message = "Missing resources object." + raise TypeError(error_message) return self.resources def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: """Evaluate dynamic path expressions.""" - if isinstance(self.state, str): self.state = State(file=self.state) @@ -375,16 +422,18 @@ class State(CommonBaseModel): file: str """Path to file containing state matrix.""" - depth: Optional[int] = Field(default=None) + depth: int | None = Field(default=None) """Depth of system, ie. number of dimensions in qu(D)it. (d) + """ - quantity: Optional[int] = Field(default=None) + quantity: int | None = Field(default=None) """Quantity of systems. ie. number of qu(D)its in state. (n) + """ def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: @@ -399,6 +448,7 @@ class RuntimeCfg(CommonBaseModel): """Visibility against white noise. Between 0 and 1. + """ max_epochs: int = Field(ge=1, le=1_000_000_000) @@ -406,6 +456,7 @@ class RuntimeCfg(CommonBaseModel): If other interruption condition is met before the number of epochs, algorithm wont execute the rest of epochs. + """ iters_per_epoch: int = Field(ge=1, le=1_000_000_000) @@ -413,22 +464,24 @@ class RuntimeCfg(CommonBaseModel): Between iterations no checks are performed, which may speed up calculations. However intermediate state of systems are not saved anywhere. + """ max_corrections: int """Maximal number of corrections to collect. Use -1 to disable this limit. + """ class Resources(CommonBaseModel): """Project resources.""" - symmetries: Optional[list[str]] = Field(default=None) + symmetries: list[str] | None = Field(default=None) """List of paths to files containing symmetry matrices.""" - projection: Optional[str] = Field(default=None) + projection: str | None = Field(default=None) """Path to file containing projection matrix.""" def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: @@ -436,19 +489,23 @@ def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None if self.symmetries is not None: for i, sym in enumerate(self.symmetries): self.symmetries[i] = sym.format( - project=project, task_name=task_name, task=task + project=project, + task_name=task_name, + task=task, ) if self.projection is not None: self.projection = self.projection.format( - project=project, task_name=task_name, task=task + project=project, + task_name=task_name, + task=task, ) BackendCfg.update_forward_refs() -GilbertCfg.update_forward_refs() # type: ignore -Resources.update_forward_refs() # type: ignore -Meta.update_forward_refs() # type: ignore -RuntimeCfg.update_forward_refs() # type: ignore -Task.update_forward_refs() # type: ignore -CSSFProject.update_forward_refs() # type: ignore +GilbertCfg.update_forward_refs() +Resources.update_forward_refs() +Meta.update_forward_refs() +RuntimeCfg.update_forward_refs() +Task.update_forward_refs() +CSSFProject.update_forward_refs() diff --git a/cssfinder/enums.py b/cssfinder/enums.py index f410dc8..ee242c9 100644 --- a/cssfinder/enums.py +++ b/cssfinder/enums.py @@ -19,7 +19,7 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains utility enums used within the cssfinder project.""" +"""Module contains utility enums used within the cssfinder project.""" from __future__ import annotations @@ -40,4 +40,9 @@ def _missing_(cls, value: object) -> Self: if member.name.casefold() == name.casefold(): return member - raise AttributeError(f"No enum value matches name {name!r}.") + reason = f"No enum value matches name {name!r}." + raise NoMatchingEnumValueError(reason) + + +class NoMatchingEnumValueError(AttributeError): + """Raised when CaseInsensitiveEnum subclass can't find matching enum value.""" diff --git a/cssfinder/hooks.py b/cssfinder/hooks.py index 5ea80ef..09e0ed3 100644 --- a/cssfinder/hooks.py +++ b/cssfinder/hooks.py @@ -18,20 +18,21 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains basic hooks which can be used by tasks.""" +"""Module contains basic hooks which can be used by tasks.""" from __future__ import annotations import json import logging from pathlib import Path -from typing import Callable - -import numpy as np -import numpy.typing as npt +from typing import TYPE_CHECKING, Callable from cssfinder.io.matrix import MatrixIO +if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt + def save_matrix_hook( destination: str | Path, @@ -39,6 +40,7 @@ def save_matrix_hook( """Builtin hook for saving state matrix. Matrix will be saved every time hook is called. + """ destination_path = Path(destination) mtx_io = MatrixIO.new(destination_path) @@ -60,6 +62,7 @@ def save_corrections_hook( """Builtin hook for saving corrections array. Corrections will be saved every time hook is called. + """ destination_path = Path(destination) diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index 8da8d87..f3d1e0f 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -19,24 +19,29 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""This module contains implementation of asset loader class in version 1.0.0 which is -compatible with CSSFProject in version 1.0.0.""" +"""Module contains implementation of asset loader class in version 1.0.0 which is +compatible with CSSFProject in version 1.0.0. +""" from __future__ import annotations import logging import math from dataclasses import dataclass -from typing import Optional +from typing import TYPE_CHECKING import numpy as np -import numpy.typing as npt +import numpy.typing as npt # noqa: TCH002 from cssfinder.base_model import CommonBaseModel from cssfinder.constants import PRIMES -from cssfinder.cssfproject import GilbertCfg from cssfinder.io.matrix import MatrixIO +if TYPE_CHECKING: + from cssfinder.cssfproject import GilbertCfg + +NUMBER_OF_DIMENSIONS_IN_MATRIX: int = 2 + class GilbertAssets(CommonBaseModel): """Container class for assets used by gilbert algorithm.""" @@ -44,10 +49,10 @@ class GilbertAssets(CommonBaseModel): state: State """Initial state for algorithm.""" - symmetries: Optional[list[npt.NDArray[np.complex128]]] + symmetries: list[npt.NDArray[np.complex128]] | None """List of symmetries of state.""" - projection: Optional[npt.NDArray[np.complex128]] + projection: npt.NDArray[np.complex128] | None """Projection to apply to state.""" @@ -69,7 +74,9 @@ def _load_state(self, gilbert_cfg: GilbertCfg) -> State: loader = MatrixIO.new(state_matrix_file_path) mtx = loader.load().astype(np.complex128) logging.info( - "Loaded matrix from %r of shape %r", state_matrix_file_path, mtx.shape + "Loaded matrix from %r of shape %r", + state_matrix_file_path, + mtx.shape, ) # We are expecting loaded ndarray to be a square matrix, all other numbers of @@ -97,31 +104,34 @@ def _load_state(self, gilbert_cfg: GilbertCfg) -> State: quantity = self._detect_system_quantity(depth, total_size) logging.info( - "Matrix represents system with depth = %r, quantity = %r", depth, quantity + "Matrix represents system with depth = %r, quantity = %r", + depth, + quantity, ) return State(state=mtx, depth=depth, quantity=quantity) def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: """Check if ndarray conforms shape rules.""" - - if len(mtx.shape) == 2: + if len(mtx.shape) == NUMBER_OF_DIMENSIONS_IN_MATRIX: pass - elif len(mtx.shape) > 2: + elif len(mtx.shape) > NUMBER_OF_DIMENSIONS_IN_MATRIX: logging.critical( - "Expected square matrix but got tensor with shape %r", mtx.shape + "Expected square matrix but got tensor with shape %r", + mtx.shape, ) - raise NotExpectedTensor(mtx) + raise NotExpectedTensorError(mtx) elif len(mtx.shape) == 1: logging.critical( - "Expected square matrix but got vector with shape %r", mtx.shape + "Expected square matrix but got vector with shape %r", + mtx.shape, ) - raise NotExpectedVector(mtx) + raise NotExpectedVectorError(mtx) elif len(mtx.shape) == 0: logging.critical("Expected square matrix but got scalar (%r)", mtx) - raise NotExpectedScalar(mtx) + raise NotExpectedScalarError(mtx) else: raise AssertionError(mtx.shape) @@ -130,7 +140,7 @@ def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: x_size, y_size = mtx.shape if x_size != y_size: logging.critical("Expected square matrix, but received shape %r", mtx.shape) - raise IncorrectMatrixShape(mtx) + raise IncorrectMatrixShapeError(mtx) def _detect_depth_and_quantity(self, total: int) -> tuple[int, int]: """Detect both system depth and system quantity. @@ -149,6 +159,7 @@ def _detect_depth_and_quantity(self, total: int) -> tuple[int, int]: ------ ValueError When depth and quantity can't be determined. + """ for depth in PRIMES: quantity = int(math.log(total, depth)) @@ -162,9 +173,8 @@ def _detect_depth_and_quantity(self, total: int) -> tuple[int, int]: ) return depth, quantity - raise ValueError( - "Couldn't determine size of system, prime number range exceeded." - ) + reason = "prime number range exceeded" + raise UndefinedSystemSizeError(reason) def _detect_system_quantity(self, depth: int, total: int) -> int: """Detect system quantity (number of subsystems). @@ -185,6 +195,7 @@ def _detect_system_quantity(self, depth: int, total: int) -> int: ------ ValueError When quantity can't be determined. + """ quantity = int(math.log(total, depth)) @@ -192,22 +203,22 @@ def _detect_system_quantity(self, depth: int, total: int) -> int: logging.debug("Deduced quantity %r when given depth of %r", depth, quantity) return quantity - raise ValueError( - f"Couldn't determine size of system: {quantity} == {int(quantity)} is " - "False.", - ) + error_reason = f"{quantity} != {int(quantity)}" + raise UndefinedSystemSizeError(error_reason) def _load_symmetries( - self, gilbert_cfg: GilbertCfg # pylint: disable=unused-argument - ) -> Optional[list[npt.NDArray[np.complex128]]]: + self, + gilbert_cfg: GilbertCfg, # noqa: ARG002 + ) -> list[npt.NDArray[np.complex128]] | None: """Load matrices describing symmetries of system state.""" - return None + return # type: ignore[return-value] def _load_projection( - self, gilbert_cfg: GilbertCfg # pylint: disable=unused-argument - ) -> Optional[npt.NDArray[np.complex128]]: + self, + gilbert_cfg: GilbertCfg, # noqa: ARG002 + ) -> npt.NDArray[np.complex128] | None: """Load matrix describing projection of system state.""" - return None + return # type: ignore[return-value] @dataclass @@ -221,33 +232,43 @@ class State: """Depth of system, ie. Dimensions in qu(D)it. (d) + """ quantity: int """Quantity of systems. ie. number of qu(D)its in state. (n) + """ -class IncorrectMatrixShape(ValueError): +class IncorrectMatrixShapeError(ValueError): """Raised when matrix has incorrect shape.""" def __init__(self, mtx: npt.NDArray[np.complex128]) -> None: + """Store matrix object in `mtx` attribute.""" super().__init__() self.mtx = mtx -class NotExpectedTensor(IncorrectMatrixShape): +class NotExpectedTensorError(IncorrectMatrixShapeError): """Raised when got 3+ dimensional tensor instead of matrix.""" -class NotExpectedVector(IncorrectMatrixShape): +class NotExpectedVectorError(IncorrectMatrixShapeError): """Raised when got vector instead of matrix.""" -class NotExpectedScalar(IncorrectMatrixShape): +class NotExpectedScalarError(IncorrectMatrixShapeError): """Raised when got scalar instead of matrix.""" +class UndefinedSystemSizeError(ValueError): + """Raised when it is not possible to determine system dimensions.""" + + def __init__(self, reason: str) -> None: + super().__init__(f"Couldn't determine size of system: {reason}.") + + GilbertAssets.update_forward_refs() diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index 1597a2f..e975f89 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -26,23 +26,33 @@ import logging from abc import ABC, abstractmethod from pathlib import Path -from typing import Optional, Type +from typing import TYPE_CHECKING import numpy as np -import numpy.typing as npt import scipy.io import cssfinder +if TYPE_CHECKING: + import numpy.typing as npt + class MatrixIO(ABC): """Abstract base class declaring interface of matrix input-output manager.""" def __init__(self, file_path: Path) -> None: + """Initialize matrix IO. + + Parameters + ---------- + file_path : Path + Path to source/destination file. + + """ self.file_path = file_path @classmethod - def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> MatrixIO: + def new(cls, file_path: str | Path, file_format: str | None = None) -> MatrixIO: """Create new instance of matrix loader for file format. When format is None, file format is deduced from file extension. @@ -50,13 +60,14 @@ def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> Matrix ---------- file_path : Path Path to file containing matrix data. - format : Optional[str], optional + file_format : Optional[str], optional File format specifier in form of extension, eg. ".mtx", by default None Returns ------- MatrixIO Matrix loader. + """ if isinstance(file_path, str): file_path = Path(file_path) @@ -65,7 +76,9 @@ def new(cls, file_path: str | Path, file_format: Optional[str] = None) -> Matrix file_format = file_path.suffix logging.debug( - "Using file format %r for file %r", file_format, file_path.as_posix() + "Using file format %r for file %r", + file_format, + file_path.as_posix(), ) return FORMAT_TO_LOADER[file_format](file_path) @@ -83,11 +96,31 @@ class MatrixMarketIO(MatrixIO): """MatrixIO implementation for loading MatrixMarket exchange format files.""" def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: + """Load the data from MatrixMarket exchange format file. + + Returns + ------- + numpy.ndarray + An array containing the data from the file in MatrixMarket format. + + """ mtx = scipy.io.mmread(self.file_path.as_posix()) assert mtx is not None return np.array(mtx) def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None: + """Write data to a MatrixMarket exchange format file. + + Parameters + ---------- + data : numpy.ndarray + An array containing the data to be written to the file. + + Returns + ------- + None + + """ self.file_path.touch(0o664, exist_ok=True) scipy.io.mmwrite( self.file_path.as_posix(), @@ -96,6 +129,6 @@ def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None ) -FORMAT_TO_LOADER: dict[str, Type[MatrixIO]] = { +FORMAT_TO_LOADER: dict[str, type[MatrixIO]] = { ".mtx": MatrixMarketIO, } diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py index 0ba178b..36c2e82 100644 --- a/cssfinder/io/output_loader.py +++ b/cssfinder/io/output_loader.py @@ -22,11 +22,12 @@ from __future__ import annotations -from typing import cast +from typing import TYPE_CHECKING, cast import pandas as pd -from cssfinder.cssfproject import Task +if TYPE_CHECKING: + from cssfinder.cssfproject import Task class GilbertOutputLoader: @@ -36,13 +37,13 @@ def load_corrections(self, task: Task) -> pd.DataFrame: """Load corrections saved from executed task. DataFrame object will have 3 columns: "iteration", "index" and "value". - """ + """ data_frame: pd.DataFrame = cast( - pd.DataFrame, pd.read_json(task.output / "corrections.json") + pd.DataFrame, + pd.read_json(task.output / "corrections.json"), ) - data_frame.rename( - columns={0: "iteration", 1: "index", 2: "value"}, inplace=True + return data_frame.rename( + columns={0: "iteration", 1: "index", 2: "value"}, ) - return data_frame diff --git a/cssfinder/log.py b/cssfinder/log.py old mode 100644 new mode 100755 index a600296..3e3df09 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -18,17 +18,56 @@ # CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. +"""Module configures the logger to log messages. It has a logger object that sends +messages to different logging handlers (file and stream), a few classes for formatters. -"""This module contains functions performing logger configuration. -Example: +Constants: +---------- +LOGGER: logging.Logger + The logger object for sending messages to logging handlers. +VERBOSITY_MAP: dict + A dictionary mapping the verbosity level to the corresponding logging level. +LOG_ENCODING: str + The encoding type of the log file. + +Functions: +---------- +def configure_logger( + *, + verbosity: int, + logger_name: str, + use_rich: bool, + log_dir: Path | None = None, + auto_rollover_sec: int = 24 * 60 * 60, + max_log_files: int = 10, +) -> None: + Configures the logger and creates logging handlers for file and stream. It takes the + following parameters: + * verbosity (int): The verbosity level of the logging messages. Must be an integer + from 0 to 3. Default is 0. + * logger_name (str): The name of the logger. Default is an empty string. + * use_rich (bool): A flag to indicate whether to use the rich library to create a + colorful log. Default is False. + * log_dir (Path | None): The path to the directory where log files will be + created. Default is the current working directory. + * auto_rollover_sec (int): The time interval in seconds before rolling over the + log file. Default is 86400 seconds (24 hours). + * max_log_files (int): The maximum number of log files to keep. Default is 10. + + +Classes: -------- -``` -from log import configure_logger -configure_logger(verbosity=2, logger_name="msts", use_rich=False) -``` -This would configure logger to log messages with severity INFO or higher without -coloring in console. -Project repository: https://github.com/Argmaster/decent-logger-config +MarkupStripFormatter(logging.Formatter) + A class to remove all formatting from the logging messages and return the plain + text. + +Methods +------- + * format(record: LogRecord) -> str: Formats the record and returns the plain text. + +NoHighlightRichHandler(RichHandler) + A subclass of RichHandler to remove all rich formatting from the logging messages. + """ from __future__ import annotations @@ -37,7 +76,7 @@ import sys from logging import LogRecord, getLogger, handlers from pathlib import Path -from typing import Any, Optional +from typing import Any from rich.console import Console from rich.logging import RichHandler @@ -57,10 +96,37 @@ class MarkupStripFormatter(logging.Formatter): - """Formatter subclass configured to remove rich library color tagging from log - messages.""" + """A logging formatter that strips `rich` markup tags from log messages before they + are emitted. + + Attributes + ---------- + None + + Methods + ------- + format(record: logging.LogRecord) -> str: + Return a formatted and stripped version of the log message. + + """ + + def format(self, record: LogRecord) -> str: # noqa: A003 + """Return the formatted string of a log record after stripping all formatting + tags. + + _extended_summary_ + + Parameters + ---------- + record : LogRecord + The log record to be formatted. - def format(self, record: LogRecord) -> str: + Returns + ------- + str + The formatted string with all formatting tags removed. + + """ string = super().format(record) # render strings with rich seg_list = Text.from_markup(string).render(Console()) @@ -69,12 +135,13 @@ def format(self, record: LogRecord) -> str: class NoHighlightRichHandler(RichHandler): - """This is a RichHandler subclass which permanently disables message highlighting - (coloring of integers, strings, etc.).""" + """RichHandler subclass which permanently disables message highlighting (coloring of + integers, strings, etc.). + """ def __init__(self, *args: Any, **kwargs: Any) -> None: super().__init__(*args, **kwargs) - self.highlighter = None # type: ignore + self.highlighter = None # type: ignore[assignment] def configure_logger( @@ -82,27 +149,35 @@ def configure_logger( verbosity: int, logger_name: str, use_rich: bool, - log_dir: Optional[Path] = None, + log_dir: Path | None = None, auto_rollover_sec: int = 24 * 60 * 60, max_log_files: int = 10, ) -> None: - """Configure global logger with stream and file handler. + """Configure a logger with a file handler and a console handler. + Parameters ---------- verbosity : int - Specifies verbosity, 0 is critical, 3 or more is debug, intermediate values - accordingly. When value exceeds this range, it is capped. + The verbosity level for the console handler. The value should be between 0 and + 3, with 0 being the least verbose and 3 being the most verbose. logger_name : str - Name of global logger, usually name of your package (or script) is a good - choice. + The name of the logger. use_rich : bool - Toggle rich logging to console. When disabled, all rich-specific color tagging - will be removed from logged messages. - auto_rollover_sec: int - Max number of seconds after which automatic log file rollover will be performed. - max_log_files: int - Max number of log files stored in log directory. After reaching max, oldest will - be overwritten. + A flag indicating whether to use the rich console handler. If True, use the rich + console handler; otherwise, use the standard console handler. + log_dir : str or Path or None, optional + The path to the directory where log files should be stored. If None, store the + log files in the current working directory. The default is None. + auto_rollover_sec : int, optional + The number of seconds after which to rollover the log file. + The default is 24 * 60 * 60. + max_log_files : int, optional + The maximum number of log files to keep. The default is 10. + + Returns + ------- + None + """ # Clamp verbosity between 0 and 3. verbosity = min(3, max(0, verbosity)) @@ -117,12 +192,15 @@ def configure_logger( # Log file handler - fixed log level to DEBUG file_handler = _create_file_handler( - logger_name, log_dir or Path.cwd() / "log", auto_rollover_sec, max_log_files + logger_name, + log_dir or Path.cwd() / "log", + auto_rollover_sec, + max_log_files, ) logger.addHandler(file_handler) # Console logging handler - variable log level - stream_handler = _create_stream_handler(verbosity, use_rich) + stream_handler = _create_stream_handler(verbosity, use_rich=use_rich) logger.addHandler(stream_handler) matplotlib_logger = getLogger("matplotlib") @@ -132,10 +210,10 @@ def configure_logger( pandas_logger.setLevel(logging.WARNING) -def _create_stream_handler(verbosity: int, use_rich: bool) -> logging.Handler: +def _create_stream_handler(verbosity: int, *, use_rich: bool) -> logging.Handler: # By default stderr may have different encoding which may result in coding errors # in least expected places in code after unfortunate use of some complex character. - sys.stderr.reconfigure(encoding=LOG_ENCODING) # type: ignore + sys.stderr.reconfigure(encoding=LOG_ENCODING) # type: ignore[attr-defined] if use_rich: # Rich library stream handler allowing for colorful log. @@ -170,7 +248,7 @@ def _create_file_handler( max_log_files: int, ) -> logging.Handler: # Create logging directory before trying to put files there. - log_dir.mkdir(0o777, True, True) + log_dir.mkdir(0o777, parents=True, exist_ok=True) log_file = log_dir / logger_name # If file already exists, logger may decide to start appending its logs to it, # which is not desired - preferably, one file for one session. @@ -206,3 +284,8 @@ def _create_file_handler( file_handler.doRollover() return file_handler + + +if __name__ == "__main__": + print(f"Decent log config ver. {__version__}") + raise SystemExit(0) diff --git a/cssfinder/report.py b/cssfinder/report.py index fac4525..5cdefaf 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -22,29 +22,50 @@ from __future__ import annotations +import sys from dataclasses import dataclass from functools import lru_cache from typing import TYPE_CHECKING import numpy as np -import numpy.typing as npt -import pandas as pd from matplotlib import pyplot as plt if TYPE_CHECKING: + import numpy.typing as npt + import pandas as pd from typing_extensions import Self def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: - """Create corrections plot from data in DataFrame. + """Create a plot of distance decay corrections. + + Parameters + ---------- + corrections : pandas.DataFrame + A DataFrame containing the distance decay corrections. The DataFrame + should have an "index" column and a "value" column. + + Returns + ------- + matplotlib.axes.Axes + The axes object for the created plot. + + Notes + ----- + The function creates a line plot of the distance decay corrections, + with the "index" column on the x-axis and the "value" column on the + y-axis. The plot includes a grid and axis labels, and a title indicating + that it shows distance decay. + + The function returns the axes object for the created plot, which can be + further customized or saved using the methods of the matplotlib API. - DataFrame object must have 2 columns: "iteration" and "value". """ plt.figure() axes = plt.subplot() axes.plot(corrections[["index"]], corrections[["value"]]) - axes.grid(True) + axes.grid(visible=True) axes.set_xlabel("Correction index") axes.set_ylabel("Correction value") @@ -55,10 +76,37 @@ def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: def create_iteration_linear_plot(corrections: pd.DataFrame) -> plt.Axes: + """Create a plot of iteration linear corrections. + + Parameters + ---------- + corrections : pandas.DataFrame + A DataFrame containing the iteration linear corrections. The DataFrame + should have columns "iteration" and "index" containing the iteration + number and correction index, respectively. + + Returns + ------- + matplotlib.axes.Axes + The axes object for the created plot. + + Notes + ----- + The function creates a line plot of the iteration linear corrections, + with the "iteration" column on the x-axis and the correction values on + the y-axis. The correction values are calculated using the + `SlopeProperties` class, which takes the "index" column as input and + returns the corresponding correction values for each iteration. + + The plot includes a grid and axis labels, but no title. The function returns + the axes object for the created plot, which can be further customized or + saved using the methods of the matplotlib API. + + """ plt.figure() axes = plt.subplot() - axes.grid(True) + axes.grid(visible=True) props = SlopeProperties.find(corrections.to_numpy()) axes.plot( @@ -70,19 +118,64 @@ def create_iteration_linear_plot(corrections: pd.DataFrame) -> plt.Axes: def cov( - array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], ) -> np.float64: - return np.mean( + """Calculate the covariance between two arrays. + + Parameters + ---------- + array_1 : numpy.ndarray + The first array. + array_2 : numpy.ndarray + The second array. + + Returns + ------- + float + The covariance between the two arrays. + + Notes + ----- + The covariance is calculated as the mean of the element-wise product of + the deviation from the mean of `array_1` and `array_2`. In other words, + the covariance measures how much two variables change together, and it + is a measure of the linear relationship between them. + + """ + return np.mean( # type: ignore[no-any-return] np.multiply( np.subtract(array_1, np.mean(array_1)), np.subtract(array_2, np.mean(array_2)), - ) + ), ) def trend( - array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], ) -> np.float64: + """Calculate the trend between two arrays. + + Parameters + ---------- + array_1 : numpy.ndarray + The first array. + array_2 : numpy.ndarray + The second array. + + Returns + ------- + float + The trend between the two arrays. + + Notes + ----- + The trend is calculated as the covariance between the logarithm of + `array_1` and `array_2` divided by the covariance between the logarithm + of `array_1` and itself. + + """ l1a = np.log(array_1) l2a = np.log(array_2) @@ -90,16 +183,62 @@ def trend( def offset( - array_1: npt.NDArray[np.float64], array_2: npt.NDArray[np.float64] + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], ) -> np.float64: + """Calculate the offset between the two input arrays. + + Offset is based on their logarithmic means and a decay trend. + + Parameters + ---------- + array_1 : numpy.ndarray[np.float64] + The first input array. + array_2 : numpy.ndarray[np.float64] + The second input array. + + Returns + ------- + numpy.float64 + The calculated offset between the two input arrays. + + Raises + ------ + ValueError + If the input arrays are empty. + + Examples + -------- + ``` + >>> array_1 = np.array([1.0, 2.0, 3.0]) + >>> array_2 = np.array([4.0, 5.0, 6.0]) + >>> offset(array_1, array_2) + 0.01638058574365686 + + ``` + + """ array_1_mean = np.mean(np.log(array_1)) array_2_mean = np.mean(np.log(array_2)) decay_trend = trend(array_1, array_2) - return_value = array_1_mean - array_2_mean * decay_trend - return return_value + + return array_1_mean - array_2_mean * decay_trend # type: ignore[no-any-return] def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: + """Find the optimum correction value for a given input array of values. + + Parameters + ---------- + values : numpy.ndarray[np.float64] + The input array of values for which to find the optimum correction. + + Returns + ------- + numpy.float64 + The optimum correction value for the input array of values. + + """ values = values upper_half = values[len(values) // 2 :] @@ -109,13 +248,14 @@ def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: while R(upper_half, optimum - step1) > R(upper_half, optimum) and optimum > 0: optimum = optimum - step1 - return optimum + return optimum # type: ignore[no-any-return] @lru_cache(16) def _r_indexes(length: int) -> npt.NDArray[np.float64]: indexes = np.arange(length) - return np.mean(np.square(indexes)) - np.square(np.mean(indexes)) + difference = np.mean(np.square(indexes)) - np.square(np.mean(indexes)) + return difference # type: ignore[no-any-return] @lru_cache(16) @@ -123,43 +263,123 @@ def _indexes(length: int) -> npt.NDArray[np.float64]: return np.arange(length, dtype=np.float64) -def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: +def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: # noqa: N802 + """Calculate the R value for a given input array of values and a correction factor. + + Parameters + ---------- + values : numpy.ndarray[np.float64] + The input array of values for which to calculate the R value. + a : numpy.float64 + The correction factor to use when calculating the R value. + + Returns + ------- + numpy.float64 + The R value for the input array of values and correction factor. + + Examples + -------- + >>> values = np.array([0.5, 0.6, 0.7, 0.8, 0.9, 1.0]) + >>> R(values, 1.0) + -0.964557517874 + + """ ll1 = np.divide(1.0, np.subtract(values, a)) length = len(values) indexes = _indexes(length) - aa1 = np.mean(np.multiply(ll1, indexes)) - np.mean(ll1) * np.mean(indexes) - aa2 = np.sqrt( - (np.mean(np.square(ll1)) - np.square(np.mean(ll1))) * _r_indexes(length) + aa1: np.float64 = np.mean(np.multiply(ll1, indexes)) - np.mean(ll1) * np.mean( + indexes, + ) + aa2: np.float64 = np.sqrt( + (np.mean(np.square(ll1)) - np.square(np.mean(ll1))) * _r_indexes(length), ) - return np.divide(aa1, aa2) + return np.divide(aa1, aa2, dtype=np.float64) # type: ignore[no-any-return] -def display_short_report(data: npt.NDArray[np.float64]): +def display_short_report(data: npt.NDArray[np.float64]) -> None: + """Display short report.""" slope_properties = SlopeProperties.find(data) expr = f"corrections = trail ^ {slope_properties.aa1} * {slope_properties.bb1}" - print( - "Basing on decay, the squared HS distance is estimated to be", - f"{slope_properties.optimum} (R={slope_properties.r_value})", + sys.stdout.write( + "Basing on decay, the squared HS distance is estimated to be " + f"{slope_properties.optimum} (R={slope_properties.r_value})\n", + ) + sys.stdout.write( + f"The dependence between correction and trail is approximately: {expr}\n", ) - print(f"The dependence between correction and trail is approximately: {expr}") @dataclass class SlopeProperties: + """Class that encapsulates slope properties and provides methods to calculate + correction values and find slope properties for a given dataset. + + Attributes + ---------- + optimum: np.float64 + The optimum value found during the slope property calculation. + r_value: np.float64 + The r-value calculated for the slope properties. + aa1: np.float64 + The slope of the trend line of the correction index with respect to iteration + index. + bb1: np.float64 + The exponential decay coefficient calculated for the slope properties. + + Methods + ------- + get_correction(x: npt.NDArray[np.float64]) -> np.float64: + Returns the correction values for a given input array `x`. + find(data: npt.NDArray[np.float64]) -> 'SlopeProperties': + Finds the slope properties for a given dataset `data`. + + """ + optimum: np.float64 r_value: np.float64 aa1: np.float64 bb1: np.float64 def get_correction(self, x: np.float64) -> np.float64: - return np.multiply(np.power(x, self.aa1), self.bb1) + """Return the correction values for a given input array `x`. + + Parameters + ---------- + x: npt.NDArray[np.float64] + Input array for which correction values will be calculated. + + Returns + ------- + np.float64 + The correction values calculated for the input array `x`. + + """ + return np.multiply( # type: ignore[no-any-return] + np.power(x, self.aa1), + self.bb1, + ) @classmethod def find(cls, data: npt.NDArray[np.float64]) -> Self: + """Find the slope properties for a given dataset `data`. + + Parameters + ---------- + data: npt.NDArray[np.float64] + The dataset for which slope properties will be calculated. + + Returns + ------- + SlopeProperties + An instance of the SlopeProperties class representing the slope properties + of the input data. + + """ iteration_index: npt.NDArray[np.float64] = data[:, 0] correction_index: npt.NDArray[np.float64] = data[:, 1] correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] diff --git a/examples/5qubits/cssfproject.py b/examples/5qubits/cssfproject.py index e9a14f2..0895d3d 100644 --- a/examples/5qubits/cssfproject.py +++ b/examples/5qubits/cssfproject.py @@ -1,8 +1,31 @@ -"""This file contains example of dynamically generated configuration. +# noqa: INP001 +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains example of dynamically generated configuration. In fact, what this script does, it simply uses cssfinder as library to perform calculations. This approach allows us to determine list of tasks without typical limitations of static files. + """ from __future__ import annotations @@ -57,5 +80,5 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, - ) + ), ) diff --git a/profiling/dataset_64_64/dataset_64_64_in.mtx b/profiling/dataset_64_64/dataset_64_64_in.mtx deleted file mode 100644 index fce7a24..0000000 --- a/profiling/dataset_64_64/dataset_64_64_in.mtx +++ /dev/null @@ -1,4099 +0,0 @@ -%%MatrixMarket matrix array integer general -% -64 64 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -1 -1 -0 -0 -0 -0 -0 -0 -0 -0 -0 -0 -1 -0 -0 -0 -1 -1 -0 -0 -0 -0 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-"""EOL module.""" -from __future__ import annotations - -from pathlib import Path - -from cssfinder.cli import main - -FILE = Path(__file__) -DIR = FILE.parent -DATASET_DIR = DIR / "dataset_64_64" - -if __name__ == "__main__": - # pylint: disable=no-value-for-parameter - main( - [ - "FSNQ", - "-i", - DATASET_DIR.resolve().as_posix(), - "--vis", - "0.4", - "--steps", - "2000000", - "--cors", - "2000", - ] - ) diff --git a/pyproject.toml b/pyproject.toml index bbbc525..f624070 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -56,9 +56,9 @@ build-backend = "poetry.core.masonry.api" [tool.pytest.ini_options] # ANCHOR: tool.pytest minversion = "7.2.0" -norecursedirs = ["external", "data"] +norecursedirs = ["external", "data", ".venv", ".env", "env", "venv"] python_files = ["test_*.py", "*_test.py"] -testpaths = ["src/eldritch", "test"] +testpaths = ["cssfinder", "test"] addopts = """ -ra --strict-markers --doctest-modules --log-level=DEBUG --cov-report=term-missing:skip-covered""" filterwarnings = [] @@ -77,11 +77,6 @@ line-length = 88 target-version = ['py38', 'py39', 'py310', 'py311'] extend-exclude = "(external)" -[tool.docformatter] -recursive = true -wrap-summaries = 88 -wrap-descriptions = 88 -blank = true [tool.mypy] # ANCHOR: tool.mypy # ---------------------------------------------------------------------------- # @@ -93,7 +88,7 @@ python_version = "3.8" # A regular expression that matches file names, directory names and paths which # mypy should ignore while recursively discovering files to check. Use forward #slashes (/) as directory separators on all platforms. -exclude = ["external", ".tox", ".venv", ".vscode"] +exclude = ["external/", ".tox/", ".venv/", ".vscode/"] # ---------------------------------------------------------------------------- # # Import discovery # # ---------------------------------------------------------------------------- # @@ -212,3 +207,494 @@ color_output = true error_summary = true # Show absolute paths to files. show_absolute_path = true + +[tool.ruff] +extend-select = [ + "A001", + "A002", + "A003", + "ANN001", + "ANN002", + "ANN003", + "ANN201", + "ANN202", + "ANN204", + "ANN205", + "ANN206", + "ARG001", + "ARG002", + "ARG003", + "ARG004", + "ARG005", + "B002", + "B003", + "B004", + "B005", + "B006", + "B007", + "B008", + "B009", + "B010", + "B011", + "B012", + "B013", + "B014", + "B015", + "B016", + "B017", + "B018", + "B019", + "B020", + "B021", + "B022", + "B023", + "B024", + "B025", + "B026", + "B027", + "B029", + "B032", + "B904", + "B905", + "BLE001", + "C400", + "C401", + "C402", + "C403", + "C404", + "C405", + "C406", + "C408", + "C409", + "C410", + "C411", + "C413", + "C414", + "C415", + "C416", + "C417", + "C901", + "COM818", + "COM819", + "D100", + "D101", + "D102", + "D103", + "D104", + "D105", + "D106", + # "D107", + "D200", + "D201", + "D202", + # "D203", + "D204", + # "D205", + "D206", + "D207", + "D208", + "D209", + "D210", + "D211", + "D212", + # "D213", + "D214", + "D215", + "D300", + "D301", + "D400", + "D401", + "D402", + "D403", + "D404", + "D405", + "D406", + "D407", + "D408", + "D409", + "D410", + "D411", + "D412", + "D413", + "D414", + "D415", + "D416", + "D417", + "D418", + "D419", + "DJ001", + "DJ008", + "DJ013", + "DTZ001", + "DTZ002", + "DTZ003", + "DTZ004", + "DTZ005", + "DTZ006", + "DTZ007", + "DTZ011", + "DTZ012", + "E101", + "E401", + "E402", + "E501", + "E701", + "E702", + "E703", + "E711", + "E712", + "E713", + "E714", + "E721", + "E722", + "E731", + "E741", + "E742", + "E743", + "E902", + "E999", + "EM101", + "EM102", + "EM103", + "ERA001", + "EXE001", + "EXE002", + "EXE003", + "EXE004", + "EXE005", + "F401", + "F402", + "F403", + "F404", + "F405", + "F406", + "F407", + "F501", + "F502", + "F503", + "F504", + "F505", + "F506", + "F507", + "F508", + "F509", + "F521", + "F522", + "F523", + "F524", + "F525", + "F541", + "F601", + "F602", + "F621", + "F622", + "F631", + "F632", + "F633", + "F634", + "F701", + "F702", + "F704", + "F706", + "F707", + "F722", + "F811", + "F821", + "F822", + "F823", + "F841", + "F842", + "F901", + "FBT001", + "FBT002", + "FBT003", + "G001", + "G002", + "G003", + "G004", + "G010", + "G101", + "G201", + "G202", + "I001", + "I002", + "ICN001", + "INP001", + "ISC001", + "ISC002", + "ISC003", + "N801", + "N802", + "N803", + "N804", + "N805", + "N806", + "N807", + "N811", + "N812", + "N813", + "N814", + "N815", + "N816", + "N817", + "N818", + "N999", + "NPY001", + "NPY002", + "PD002", + "PD003", + "PD004", + "PD007", + "PD008", + "PD009", + "PD010", + "PD011", + "PD012", + "PD013", + "PD015", + "PD901", + "PGH001", + "PGH002", + "PGH003", + "PGH004", + "PIE790", + "PIE794", + "PIE796", + "PIE800", + "PIE804", + "PIE807", + "PIE810", + "PLC041", + "PLC0414", + "PLC300", + "PLC3002", + "PLE010", + "PLE0100", + "PLE0101", + "PLE011", + "PLE0117", + "PLE0118", + "PLE060", + "PLE0604", + "PLE0605", + "PLE114", + "PLE1142", + "PLE120", + "PLE1205", + "PLE1206", + "PLE130", + "PLE1307", + "PLE131", + "PLE1310", + "PLE250", + "PLE2502", + "PLR013", + "PLR0133", + "PLR020", + "PLR0206", + "PLR040", + "PLR0402", + "PLR091", + "PLR0911", + "PLR0912", + "PLR0913", + "PLR0915", + "PLR170", + "PLR1701", + "PLR172", + "PLR1722", + "PLR200", + "PLR2004", + "PLW012", + "PLW0120", + "PLW060", + "PLW0602", + "PLW290", + "PLW2901", + "PT001", + "PT002", + "PT003", + "PT004", + "PT005", + "PT006", + "PT007", + "PT008", + "PT009", + "PT010", + "PT011", + "PT012", + "PT013", + "PT015", + "PT016", + "PT017", + "PT018", + "PT019", + "PT020", + "PT021", + "PT022", + "PT023", + "PT024", + "PT025", + "PT026", + "PTH100", + "PTH101", + "PTH102", + "PTH103", + "PTH104", + "PTH105", + "PTH106", + "PTH107", + "PTH108", + "PTH109", + "PTH110", + "PTH111", + "PTH112", + "PTH113", + "PTH114", + "PTH115", + "PTH116", + "PTH117", + "PTH118", + "PTH119", + "PTH120", + "PTH121", + "PTH122", + "PTH123", + "PTH124", + "PYI001", + "PYI007", + "PYI008", + "Q000", + "Q001", + "Q002", + "Q003", + "RET501", + "RET502", + "RET503", + # "RET504", + "RET505", + "RET506", + "RET507", + "RET508", + "RSE102", + "RUF001", + "RUF002", + "RUF003", + # "RUF004", + "RUF005", + "RUF006", + "RUF100", + "S102", + "S103", + "S104", + "S105", + "S106", + "S107", + "S108", + "S110", + "S112", + "S113", + "S324", + "S501", + "S506", + "S508", + "S509", + "S608", + "S612", + "S701", + "SIM101", + "SIM102", + "SIM103", + "SIM105", + "SIM107", + "SIM108", + "SIM109", + "SIM110", + "SIM112", + "SIM114", + "SIM115", + "SIM116", + "SIM117", + "SIM118", + "SIM201", + "SIM202", + "SIM208", + "SIM210", + "SIM211", + "SIM212", + "SIM220", + "SIM221", + "SIM222", + "SIM223", + "SIM300", + "SIM401", + "SLF001", + "T100", + "T203", + "TCH001", + "TCH002", + "TCH003", + "TCH004", + "TCH005", + "TID251", + "TID252", + "TRY002", + "TRY003", + "TRY004", + "TRY200", + "TRY201", + "TRY300", + "TRY301", + "TRY400", + "TRY401", + "UP001", + "UP003", + "UP004", + "UP005", + "UP006", + "UP007", + "UP008", + "UP009", + "UP010", + "UP011", + "UP012", + "UP013", + "UP014", + "UP015", + "UP017", + "UP018", + "UP019", + "UP020", + "UP021", + "UP022", + "UP023", + "UP024", + "UP025", + "UP026", + "UP027", + "UP028", + "UP029", + "UP030", + "UP031", + "UP032", + "UP033", + "UP034", + "UP035", + "UP036", + "UP037", + "W292", + "W505", + "W605", + "YTT101", + "YTT102", + "YTT103", + "YTT201", + "YTT202", + "YTT203", + "YTT204", + "YTT301", + "YTT302", + "YTT303", +] +show-fixes = true +target-version = "py38" diff --git a/scripts/__init__.py b/scripts/__init__.py new file mode 100644 index 0000000..2ab52dd --- /dev/null +++ b/scripts/__init__.py @@ -0,0 +1,23 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Development utility scripts.""" + +from __future__ import annotations diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py index ba44d79..9faf8cf 100644 --- a/scripts/gen_numpy_impl.py +++ b/scripts/gen_numpy_impl.py @@ -1,3 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + """Script for generating numpy precision backends from template.""" from __future__ import annotations @@ -20,10 +41,13 @@ @click.option("--debug-dtype-checks", is_flag=True, default=False) @click.option("--use-legacy-random", is_flag=True, default=False) def main( - dest: Path, disable_jit: bool, debug_dtype_checks: bool, use_legacy_random: bool + dest: Path, + *, + disable_jit: bool, + debug_dtype_checks: bool, + use_legacy_random: bool, ) -> None: """Generate numpy precision backends from template.""" - logging.warning("Option --disable-jit %r", disable_jit) logging.warning("Option --debug-dtype-checks %r", debug_dtype_checks) diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index 2416405..c331a29 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -27,7 +27,7 @@ # # # ------------------------------------------------------------------------------------ # # -"""This module contains implementation of backend operations in numpy. +"""Module contains implementation of backend operations in numpy. Spec ---- @@ -38,10 +38,13 @@ Spec from __future__ import annotations +from typing import TYPE_CHECKING + import numpy as np -import numpy.typing as npt from numba import jit +if TYPE_CHECKING: + import numpy.typing as npt {% if debug_dtype_checks %} @@ -84,15 +87,15 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = np.trace(np.dot(matrix1, matrix2)).real {% if debug_dtype_checks %}assert_dtype(retval, {{floating}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: """Generate a random vector with Haar measure.""" - real = np.random.uniform(0, 1, depth) - imag = np.random.uniform(0, 1, depth) + real = np.random.uniform(0, 1, depth) # noqa: NPY002 + imag = np.random.uniform(0, 1, depth) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) {% if is_32bit %} @@ -103,15 +106,15 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Generate multiple random vectors with Haar measure in form of matrix.""" - real = np.random.uniform(0, 1, (quantity, depth)) - imag = np.random.uniform(0, 1, (quantity, depth)) + real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 + imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) {% if is_32bit %} @@ -122,12 +125,12 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) {% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: - """Normalization of a vector.""" + """Normalize a vector.""" {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} mtx2 = np.dot(mtx, np.conj(mtx)) @@ -139,7 +142,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = (mtx / val) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) @@ -150,7 +153,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = np.outer(mtx1, np.conj(mtx1)) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(forceobj=True, cache=True) @@ -175,7 +178,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = out_mtx.reshape(output_shape).astype({{complex}}, copy=False) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) @@ -192,13 +195,13 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) rho2a = np.dot(unitary, rho2a) # matmul replaced with dot {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} - return rho2a # type: ignore + return rho2a # type: ignore[no-any-return] -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa +# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 +# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 +# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 +# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 +# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 {% if not disable_jit %}@jit(forceobj=True) {% endif %}def optimize_d_fs( @@ -243,7 +246,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) product_rot2_3 = product(rotated_2, visibility_state) - return rotated_2.astype({{complex}}, copy=False) # type: ignore + return rotated_2.astype({{complex}}, copy=False) # type: ignore[no-any-return] {% if not disable_jit %}@jit(forceobj=True, cache=True) @@ -257,7 +260,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) mtx = expand_d_fs(value, depth, quantity, idx) {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - return mtx # type: ignore + return mtx # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) @@ -273,7 +276,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) value = np.add(rand_mul, identity_mtx) {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} - return value # type: ignore + return value # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) @@ -293,7 +296,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) vector = project(vector) {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - return vector # type: ignore + return vector # type: ignore[no-any-return] @@ -321,7 +324,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) kronecker_2 = kronecker(kronecker_1, identity_2) {% if debug_dtype_checks %}assert_dtype(kronecker_2, {{complex}}){% endif %} - return kronecker_2 # type: ignore + return kronecker_2 # type: ignore[no-any-return] # ██████ ███████ ███ ███ ██████ ██████ ███████ @@ -345,7 +348,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) vector = project(vector) {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - return vector # type: ignore + return vector # type: ignore[no-any-return] {% macro _random_unitary_bs() -%} @@ -375,7 +378,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = kronecker(unitary_biseparable, identity_quantity) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) @@ -387,7 +390,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) retval = kronecker(identity_quantity, unitary_biseparable) {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - return retval # type: ignore + return retval # type: ignore[no-any-return] {% if not disable_jit %}@jit(forceobj=True) @@ -398,7 +401,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) quantity: int, updates_count: int, ) -> npt.NDArray[{{complex}}]: - """Runs the minimization algorithm to optimize the biseparable state. + """Run the minimization algorithm to optimize the biseparable state. Parameters ---------- From 8ebe32a304d3a11c20e40e7dffb48c60d403870b Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 6 Mar 2023 23:52:26 +0100 Subject: [PATCH 052/227] Update README to mach current project state --- README.md | 185 +++++- cssfinder/__init__.py | 2 +- cssfinder/cssfproject.py | 33 +- cssfinder/io/asset_loader.py | 4 +- docs/images/failed_task.png | Bin 0 -> 35598 bytes docs/images/poe_build.png | Bin 0 -> 17558 bytes docs/images/run_hooks_output.png | Bin 0 -> 146627 bytes .../profiling/5qubits_prof/5qubits_in.mtx | 531 ++++++++++++++++++ .../profiling/5qubits_prof/cssfproject.py | 84 +++ poetry.lock | 20 +- pyproject.toml | 2 +- 11 files changed, 798 insertions(+), 63 deletions(-) create mode 100644 docs/images/failed_task.png create mode 100644 docs/images/poe_build.png create mode 100644 docs/images/run_hooks_output.png create mode 100644 examples/profiling/5qubits_prof/5qubits_in.mtx create mode 100644 examples/profiling/5qubits_prof/cssfproject.py diff --git a/README.md b/README.md index 97a8aee..0fae03f 100644 --- a/README.md +++ b/README.md @@ -2,52 +2,193 @@

CSSFinder

-## Building +## Installing -To build wheel file You have to use [poetry](https://pypi.org/project/poetry/) -(version 1.3.1 is recommended): +To install CSSFinder from PyPI, use `pip` in terminal: ``` -pip install poetry==1.3.1 +pip install cssfinder ``` -Then run: +If you want to use development version, traverse `Development` and `Packaging` +sections below. + +## Development + +This project uses `Python` programming language and requires at least python +`3.8` for development and distribution. Development dependencies +[`poetry`](https://pypi.org/project/poetry/) for managing dependencies and +distribution building. It is necessary to perform any operations in development +environment. + +To install poetry globally (preferred way) use `pip` in terminal: ``` -poetry build --format=wheel +pip install poetry ``` -Wheel file will be created: `dist/cssfinder-x.y.z-py3-none-any.whl`. To install -it, use pip: +Then use ``` -pip install dist/cssfinder-x.y.z-py3-none-any.whl +poetry shell ``` -**Important**: Replace `x.y.z` with current version of CSSFinder. You can find -it in `pyproject.toml` file in root of repository. +to spawn new shell with virtual environment activated. Virtual environment will +be indicated by terminal prompt prefix `(cssfinder-py3.10)`, version indicated +in prefix depends on used version of Python interpreter. It is not necessary to +use Python 3.10, however at least 3.8 is required. + +Within shell with active virtual environment use: -```toml -[tool.poetry] -# ... -version = "x.y.z" -# ... +``` +poetry install --sync ``` -## Profiling +To install all dependencies. Every time you perform a `git pull` or change a +branch, you should call this command to make sure you have the correct versions +of dependencies. + +Last line should contain something like: + +``` +Installing the current project: cssfinder (0.1.0) +``` + +If no error messages are shown, You are good to go. + +## Packaging + +A Python Wheel is a built package format for Python that can be easily +installed and distributed, containing all the files necessary to install a +module and can be installed with pip with all dependencies automatically +installed too. + +To create wheel of cssfinder use `poe` task in terminal: + +``` +poe build +``` + +![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) + +This will create `dist/` directory with `cssfinder-0.1.0-py3-none-any.whl` or +alike inside. + +Wheel file can be installed with + +``` +pip install ./dist/cssfinder-0.1.0-py3-none-any.whl +``` + +What you expect is + +``` +Successfully installed cssfinder-0.1.0 +``` + +or rather something like + +``` +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.1.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +``` + +But `cssfinder-0.1.0` should be included in this list. -Performance profiling is done using dummy dataset from profiling directory. -Mentioned directory also contains `fsqn.py` which calls cssfinder machinery -with fixed set of params. +## Code changes + +To ensure that all code follow same style guidelines and code quality rules, +multiple static analysis tools are used. For simplicity, all of them are +configured as `pre-commit` ([learn about pre-commit](https://pre-commit.com/)) +hooks. Most of them however are listed as development dependencies. + +- `autocopyright`: This hook automatically adds copyright headers to files. It + is used to ensure that all files in the repository have a consistent + copyright notice. + +- `autoflake`: This hook automatically removes unused imports from Python code. + It is used to help keep code clean and maintainable by removing unnecessary + code. + +- `docformatter`: This hook automatically formats docstrings in Python code. It + is used to ensure that docstrings are consistent and easy to read. + +- `prettier`: This hook automatically formats code in a variety of languages, + including JavaScript, HTML, CSS, and Markdown. It is used to ensure that code + is consistently formatted and easy to read. + +- `isort`: This hook automatically sorts Python imports. It is used to ensure + that imports are organized in a consistent and readable way. + +- `black`: This hook automatically formats Python code. It is used to ensure + that code is consistently formatted and easy to read. + +- `check-merge-conflict`: This hook checks for merge conflicts. It is used to + ensure that code changes do not conflict with other changes in the + repository. + +- `check-case-conflict`: This hook checks for case conflicts in file names. It + is used to ensure that file names are consistent and do not cause issues on + case-sensitive file systems. + +- `trailing-whitespace`: This hook checks for trailing whitespace in files. It + is used to ensure that files do not contain unnecessary whitespace. + +- `end-of-file-fixer`: This hook adds a newline to the end of files if one is + missing. It is used to ensure that files end with a newline character. + +- `debug-statements`: This hook checks for the presence of debugging statements + (e.g., print statements) in code. It is used to ensure that code changes do + not contain unnecessary debugging code. + +- `check-added-large-files`: This hook checks for large files that have been + added to the repository. It is used to ensure that large files are not + accidentally committed to the repository. + +- `check-toml`: This hook checks for syntax errors in TOML files. It is used to + ensure that TOML files are well-formed. + +- `mixed-line-ending`: This hook checks for mixed line endings (e.g., a mix of + Windows and Unix line endings) in text files. It is used to ensure that text + files have consistent line endings. + +To run all checks, you must install hooks first with poe + +``` +poe install-hooks +``` + +After you have once used this command, you wont have to use it in this +environment. Then you can use + +``` +poe run-hooks +``` + +To run checks and automatic fixing. Not all issues can be automatically fixed, +some of them will require your intervention. + +Successful hooks run should leave no Failed tasks: + +![run_hooks_output](https://user-images.githubusercontent.com/56170852/223247968-8333e9ee-c0f0-4cce-afe1-a8e7917d9b0a.png) + +Example of failed task: + +![failed_task](https://user-images.githubusercontent.com/56170852/223249222-113a1269-fb3c-4d2c-b2ba-3d26e8ac090a.png) + +Those hooks will be run also while you try to commit anything. If any tasks +fails, no commit will be created, instead you will be expected to fix errors +and add stage fixes. Then you may retry running `git commit`. + +## Profiling To run simple profiling, You can use following command: ``` -python -mcProfile -o cssf_64_64.prof profiling/fsqn_64_64.py +python -mcProfile -o "#examples_profile_5qubits_prof.prof" "examples/profiling/5qubits_prof/cssfproject.py" ``` Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): ``` -snakeviz cssf_64_64.prof +snakeviz "#examples_profile_5qubits_prof.prof" ``` diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index db71ee2..030d37f 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "1.0.0" +__version__ = "0.1.0" diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 99509f7..4903ab2 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -21,9 +21,6 @@ """CSSFinder uses its own project format allowing for file based customization of parameters used by gilbert algorithm. - -This file contains implementation of project configuration in 1.0.0 version. - """ @@ -77,18 +74,18 @@ def __init__( @classmethod def _validate_tasks( cls, - value: Iterable[dict[str, Any]] | dict[str, dict[str, Any] | Any], - ) -> dict[str, dict[str, Any]]: + value: Iterable[dict[str, Any] | Task] | dict[str, dict[str, Any] | Task | Any], + ) -> dict[str, dict[str, Any] | Task]: if isinstance(value, dict): for k, v in value.items(): - if not isinstance(v, dict): + if not isinstance(v, (dict, Task)): error_message = f"Incorrect format of Tasks field {k!r}." raise IncorrectFormatOfTaskFieldError(error_message) return {str(k): dict(v) for k, v in value.items()} for i, v in enumerate(value): - if not isinstance(v, dict): + if not isinstance(v, (dict, Task)): error_message = f"Incorrect format of Tasks field {i!r}." raise IncorrectFormatOfTaskFieldError(error_message) @@ -126,7 +123,7 @@ def directory(self) -> Path: def output(self) -> Path: """Path to output directory for this project.""" directory = self.directory / "output" - directory.mkdir(0o764, parents=True, exists_ok=True) + directory.mkdir(0o764, parents=True, exist_ok=True) return directory @classmethod @@ -317,32 +314,16 @@ class GilbertCfg(CommonBaseModel): resources: Resources | None = Field(default=None) """Additional resources which may be used by algorithm.""" - @validator("resources", pre=True) - @classmethod - def _use_default_resources(cls, value: Resources | None) -> Resources: - if value is None: - return Resources() - return value - - @validator("backend", pre=True) - @classmethod - def _use_default_backend(cls, value: BackendCfg | None) -> BackendCfg: - if value is None: - return BackendCfg(name=Backend.NumPy, precision=Precision.DOUBLE) - return value - def get_backend(self) -> BackendCfg: """Return resources object.""" if self.backend is None: - error_message = "Missing backend object." - raise TypeError(error_message) + self.backend = BackendCfg(name=Backend.NumPy, precision=Precision.DOUBLE) return self.backend def get_resources(self) -> Resources: """Return resources object.""" if self.resources is None: - error_message = "Missing resources object." - raise TypeError(error_message) + self.resources = Resources() return self.resources def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index f3d1e0f..4eb3d4a 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -19,9 +19,7 @@ # OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -"""Module contains implementation of asset loader class in version 1.0.0 which is -compatible with CSSFProject in version 1.0.0. -""" +"""Module contains implementation of asset loader class.""" from __future__ import annotations diff --git a/docs/images/failed_task.png b/docs/images/failed_task.png new file mode 100644 index 0000000000000000000000000000000000000000..8243b52acc37fcb248a87d3d4d757e50a28de0c7 GIT binary patch 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rKKsoZk5_;F?d;D|hKad-EMi^YgGS +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains example of dynamically generated configuration. + +In fact, what this script does, it simply uses cssfinder as library to perform +calculations. This approach allows us to determine list of tasks without typical +limitations of static files. + +""" + +from __future__ import annotations + +from pathlib import Path + +from pydantic import EmailStr + +from cssfinder.api import run_project +from cssfinder.cssfproject import ( + AlgoMode, + Backend, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, +) + +TASKS = [ + Task( + gilbert=GilbertCfg( + mode=AlgoMode.FSnQd, + backend=BackendCfg( + name=Backend.NumPy, + precision=Precision.SINGLE, + ), + state=State(file=path.as_posix()), + runtime=RuntimeCfg( + visibility=0.4, + max_epochs=10, + iters_per_epoch=1000, + max_corrections=100, + ), + ), + ) + for path in Path(__file__).parent.glob("*_in.mtx") +] + +project = CSSFProject( + meta=Meta( + author="Example", + email=EmailStr("example@example.com"), + name="5qubits_prof", + description="Project description", + version=SemVerStr("1.0.0"), + ), + tasks=TASKS, +) +project.set_file_path(Path("examples/profiling/5qubits_prof/cssfproject.py")) + +run_project(project) diff --git a/poetry.lock b/poetry.lock index 19b685c..971492a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. [[package]] name = "appdirs" @@ -676,18 +676,18 @@ testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest (>=7.2)", "pyt [[package]] name = "fonttools" -version = "4.38.0" +version = "4.39.0" description = "Tools to manipulate font files" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "fonttools-4.38.0-py3-none-any.whl", hash = "sha256:820466f43c8be8c3009aef8b87e785014133508f0de64ec469e4efb643ae54fb"}, - {file = "fonttools-4.38.0.zip", hash = "sha256:2bb244009f9bf3fa100fc3ead6aeb99febe5985fa20afbfbaa2f8946c2fbdaf1"}, + {file = "fonttools-4.39.0-py3-none-any.whl", hash = "sha256:f5e764e1fd6ad54dfc201ff32af0ba111bcfbe0d05b24540af74c63db4ed6390"}, + {file = "fonttools-4.39.0.zip", hash = "sha256:909c104558835eac27faeb56be5a4c32694192dca123d073bf746ce9254054af"}, ] [package.extras] -all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"] +all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.0.0)", "xattr", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] interpolatable = ["munkres", "scipy"] lxml = ["lxml (>=4.0,<5)"] @@ -697,7 +697,7 @@ repacker = ["uharfbuzz (>=0.23.0)"] symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] -unicode = ["unicodedata2 (>=14.0.0)"] +unicode = ["unicodedata2 (>=15.0.0)"] woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] @@ -2488,14 +2488,14 @@ jeepney = ">=0.6" [[package]] name = "setuptools" -version = "67.4.0" +version = "67.5.1" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "setuptools-67.4.0-py3-none-any.whl", hash = "sha256:f106dee1b506dee5102cc3f3e9e68137bbad6d47b616be7991714b0c62204251"}, - {file = "setuptools-67.4.0.tar.gz", hash = "sha256:e5fd0a713141a4a105412233c63dc4e17ba0090c8e8334594ac790ec97792330"}, + {file = "setuptools-67.5.1-py3-none-any.whl", hash = "sha256:1c39d42bda4cb89f7fdcad52b6762e3c309ec8f8715b27c684176b7d71283242"}, + {file = "setuptools-67.5.1.tar.gz", hash = "sha256:15136a251127da2d2e77ac7a1bc231eb504654f7e3346d93613a13f2e2787535"}, ] [package.extras] diff --git a/pyproject.toml b/pyproject.toml index f624070..994a967 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "1.0.0" +version = "0.1.0" description = "" authors = [ "Krzysztof Wiśniewski ", From de3c12673958efbc7de057d8728c431ed81a527a Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 7 Mar 2023 01:44:40 +0100 Subject: [PATCH 053/227] Add primitive system tests --- .github/workflows/system_tests.yaml | 55 +++++++++++++++ .pre-commit-config.yaml | 2 + .vscode/dictionary.txt | 3 + cssfinder/io/output_loader.py | 34 +++++++-- cssfinder/report.py | 6 -- examples/5qubits/cssfproject.json | 19 ++--- pyproject.toml | 1 + test/__init__.py | 23 ++++++ test/system/__init__.py | 30 ++++++++ test/system/test_fsnqd.py | 104 ++++++++++++++++++++++++++++ 10 files changed, 258 insertions(+), 19 deletions(-) create mode 100644 .github/workflows/system_tests.yaml create mode 100644 test/__init__.py create mode 100644 test/system/__init__.py create mode 100644 test/system/test_fsnqd.py diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml new file mode 100644 index 0000000..15bd716 --- /dev/null +++ b/.github/workflows/system_tests.yaml @@ -0,0 +1,55 @@ +# Name of the workflow. This will be displayed in the Actions tab of your repository. +name: Python package + +# Specifies when the workflow should run. In this case, it will run on every push to the main branch and on every pull request to the main branch. +on: + push: + branches: [main, feature/**] + pull_request: + branches: [main, feature/**] + +# Defines the jobs that should be run as part of this workflow. +jobs: + # The name of this job. You can have multiple jobs in a workflow. + build: + # Defines a matrix of operating systems and Python versions to test against. + strategy: + matrix: + os: [ubuntu-latest, windows-latest, macOS-latest] + python-version: ["3.8", "3.9", "3.10"] + + # Specifies which operating system to run the job on. + runs-on: ${{ matrix.os }} + + # Prevents a workflow run from failing when a job fails. + continue-on-error: true + + # The steps that should be run as part of this job. + steps: + - name: Checkout code + # This step checks out your code from your repository. + uses: actions/checkout@v3.1.0 + + - name: Set up Python ${{ matrix.python-version }} + # This step sets up the specified version of Python. + # Uses setup-python action. + uses: actions/setup-python@v4.5.0 + with: + python-version: ${{ matrix.python-version }} + architecture: "x64" + + - name: Install Poetry + # This step installs Poetry using pip. + run: pip install poetry + + - name: Install dependencies + # This step installs the dependencies specified in the Poetry lock file. + run: poetry install + + - name: Generate debug numpy backend + # This step generated numpy backend with all debug options enabled. + run: poetry run poe gen-numpy-impl --disable-jit --debug-dtype-checks + + - name: Test with pytest + # This step runs the tests using pytest. + run: poetry run poe test-system diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1c854c3..c27280a 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -11,6 +11,8 @@ repos: -d, cssfinder, -d, + tests, + -d, scripts, -d, examples, diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index 8ee827e..a913d4f 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -8,6 +8,8 @@ figheight figsize figwidth forceobj +fsnqd +isreal jsonref Krzysztof levelname @@ -22,6 +24,7 @@ numba numpy pydantic pyplot +pytest qubits savefig scipy diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py index 36c2e82..ef3ace0 100644 --- a/cssfinder/io/output_loader.py +++ b/cssfinder/io/output_loader.py @@ -24,9 +24,16 @@ from typing import TYPE_CHECKING, cast +import numpy as np import pandas as pd +from cssfinder.io.matrix import MatrixIO + if TYPE_CHECKING: + from pathlib import Path + + import numpy.typing as npt + from cssfinder.cssfproject import Task @@ -39,11 +46,30 @@ def load_corrections(self, task: Task) -> pd.DataFrame: DataFrame object will have 3 columns: "iteration", "index" and "value". """ - data_frame: pd.DataFrame = cast( - pd.DataFrame, - pd.read_json(task.output / "corrections.json"), - ) + return self.load_corrections_from(task.output / "corrections.json") + + def load_corrections_from(self, source: Path) -> pd.DataFrame: + """Load corrections from a JSON file and return them as a pandas DataFrame. + + Parameters + ---------- + source : Path + Path to the JSON file containing corrections data. + + Returns + ------- + pd.DataFrame + A DataFrame containing the corrections data, with columns renamed to + "iteration", "index", and "value". + + """ + data_frame: pd.DataFrame = cast(pd.DataFrame, pd.read_json(source)) return data_frame.rename( columns={0: "iteration", 1: "index", 2: "value"}, ) + + def load_state_from(self, source: Path) -> npt.NDArray[np.complex128]: + """Load state matrix from specified location.""" + loader = MatrixIO.new(source) + return loader.load().astype(np.complex128) diff --git a/cssfinder/report.py b/cssfinder/report.py index 5cdefaf..a4162a0 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -278,12 +278,6 @@ def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: # noqa: N8 numpy.float64 The R value for the input array of values and correction factor. - Examples - -------- - >>> values = np.array([0.5, 0.6, 0.7, 0.8, 0.9, 1.0]) - >>> R(values, 1.0) - -0.964557517874 - """ ll1 = np.divide(1.0, np.subtract(values, a)) length = len(values) diff --git a/examples/5qubits/cssfproject.json b/examples/5qubits/cssfproject.json index ebcb30f..ebcb5f0 100644 --- a/examples/5qubits/cssfproject.json +++ b/examples/5qubits/cssfproject.json @@ -8,7 +8,7 @@ "version": "1.0.0" }, "tasks": { - "0": { + "main": { "gilbert": { "mode": "FSnQd", "backend": { @@ -32,24 +32,25 @@ } } }, - "1": { + "test_fsnqd_5qubits": { "gilbert": { "mode": { - "$ref": "#/tasks/0/gilbert/mode" + "$ref": "#/tasks/main/gilbert/mode" }, "backend": { - "$ref": "#/tasks/0/gilbert/backend" + "$ref": "#/tasks/main/gilbert/backend" }, "runtime": { - "$ref": "#/tasks/0/gilbert/runtime" + "visibility": 0.4, + "max_epochs": 10, + "iters_per_epoch": 10, + "max_corrections": 10 }, "state": { - "file": "{project.directory}/5qubits_in.mtx", - "depth": null, - "quantity": null + "$ref": "#/tasks/main/gilbert/state" }, "resources": { - "$ref": "#/tasks/0/gilbert/resources" + "$ref": "#/tasks/main/gilbert/resources" } } } diff --git a/pyproject.toml b/pyproject.toml index 994a967..feb62e8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,7 @@ install-hooks = "pre-commit install --install-hooks --overwrite" run-hooks = "pre-commit run --all-files -v" build = "poetry build --format=wheel" gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } +test-system = " poetry run pytest test/system -v --cov" [build-system] requires = ["poetry-core"] diff --git a/test/__init__.py b/test/__init__.py new file mode 100644 index 0000000..af67abf --- /dev/null +++ b/test/__init__.py @@ -0,0 +1,23 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Root container for all tests.""" + +from __future__ import annotations diff --git a/test/system/__init__.py b/test/system/__init__.py new file mode 100644 index 0000000..a01dc09 --- /dev/null +++ b/test/system/__init__.py @@ -0,0 +1,30 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Root container for all system level tests. + +System Testing: This level of testing involves testing the entire software system as a +whole. The purpose of system testing is to verify that the software meets all the +functional and non-functional requirements and performs as intended. + +""" + + +from __future__ import annotations diff --git a/test/system/test_fsnqd.py b/test/system/test_fsnqd.py new file mode 100644 index 0000000..b85a250 --- /dev/null +++ b/test/system/test_fsnqd.py @@ -0,0 +1,104 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Module groups system level test of FSnQd mode of Gilbert algorithm.""" + +from __future__ import annotations + +from pathlib import Path +from typing import TYPE_CHECKING + +import numpy as np + +from cssfinder.api import run_project_from +from cssfinder.io.output_loader import GilbertOutputLoader + +if TYPE_CHECKING: + import numpy.typing as npt + import pandas as pd + +PROJECT_5QUBITS = Path.cwd() / "examples" / "5qubits" + + +class TestFSnQd5qubits: + """Test behavior of FSnQd mode of Gilbert algorithm.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + + output: Path + """Path to output directory.""" + + corrections: pd.DataFrame + """List of corrections obtained from cssfinder.""" + + state: npt.NDArray[np.complex128] + """Final state matrix.""" + + @classmethod + def setup_class(cls) -> None: + """Run class setup. + + Executed once for class, shared between tests within class. + + """ + run_project_from(PROJECT_5QUBITS, ["test_fsnqd_5qubits"]) + cls.output = PROJECT_5QUBITS / "output" / "test_fsnqd_5qubits" + + cls.corrections = GilbertOutputLoader().load_corrections_from( + cls.output / "corrections.json" + ) + cls.state = GilbertOutputLoader().load_state_from(cls.output / "state.mtx") + + def test_number_of_corrections(self) -> None: + """Check if valid number of corrections was saved.""" + assert len(self.corrections) >= self.EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS + + def test_first_correction(self) -> None: + """Check if first correction value is within expected range.""" + value = self.corrections["value"].iloc[0] + + min_value = 0.118 + max_value = 0.120 + + assert min_value < value < max_value + + def test_last_better_than_first_correction(self) -> None: + """Check if last correction is better (smaller) than first correction.""" + values = self.corrections["value"] + first, last = values.iloc[0], values.iloc[-1] + + min_expected = 0.100 + + assert first > last > min_expected + + def test_state_shape(self) -> None: + """Check if output state has correct shape.""" + state_row_count = 32 + state_column_count = 32 + + assert self.state.shape == (state_row_count, state_column_count) + + def test_state_dtype(self) -> None: + """Check if output state has correct data type.""" + assert self.state.dtype == np.complex128 + + def test_state_not_all_real(self) -> None: + """Check if there are complex parts of values in state.""" + assert not np.all(np.isreal(self.state)) From d3007ec68dd4e234c1115d10eafd3291acac0a40 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 7 Mar 2023 02:02:09 +0100 Subject: [PATCH 054/227] Fix type annotation of models attributes to not use | --- cssfinder/cssfproject.py | 20 ++++++++++---------- cssfinder/io/asset_loader.py | 6 +++--- pyproject.toml | 2 +- 3 files changed, 14 insertions(+), 14 deletions(-) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 4903ab2..b3d279f 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -30,7 +30,7 @@ import json import logging from pathlib import Path -from typing import TYPE_CHECKING, Any, Iterable +from typing import TYPE_CHECKING, Any, Iterable, Optional, Union import jsonref from pydantic import ConstrainedStr, EmailStr, Field, validator @@ -51,7 +51,7 @@ class CSSFProject(CommonBaseModel): tasks: dict[str, Task] """List of tasks within project which can be executed.""" - _file: Path | None = None + _file: Optional[Path] = None """Path to loaded project file.""" _is_evaluated: bool = False @@ -265,7 +265,7 @@ class SemVerStr(ConstrainedStr): class Task(CommonBaseModel): """Container representing CSSFinder task with some algorithm.""" - gilbert: GilbertCfg | None = Field(default=None) + gilbert: Optional[GilbertCfg] = Field(default=None) """Configuration of gilbert algorithm.""" _output: Path = Field(default=Path.cwd()) @@ -298,20 +298,20 @@ class GilbertCfg(CommonBaseModel): mode: AlgoMode """Algorithm mode to use.""" - backend: BackendCfg | None = Field(default=None) + backend: Optional[BackendCfg] = Field(default=None) """Configuration of backend which will be used for execution. When backend configuration is not specified, numpy with double precision is used. """ - state: State | str | Path + state: Union[State, str, Path] """Path to file containing initial state matrix.""" runtime: RuntimeCfg """Configuration of runtime limits and parameters influencing algorithm run time.""" - resources: Resources | None = Field(default=None) + resources: Optional[Resources] = Field(default=None) """Additional resources which may be used by algorithm.""" def get_backend(self) -> BackendCfg: @@ -403,14 +403,14 @@ class State(CommonBaseModel): file: str """Path to file containing state matrix.""" - depth: int | None = Field(default=None) + depth: Optional[int] = Field(default=None) """Depth of system, ie. number of dimensions in qu(D)it. (d) """ - quantity: int | None = Field(default=None) + quantity: Optional[int] = Field(default=None) """Quantity of systems. ie. number of qu(D)its in state. (n) @@ -459,10 +459,10 @@ class RuntimeCfg(CommonBaseModel): class Resources(CommonBaseModel): """Project resources.""" - symmetries: list[str] | None = Field(default=None) + symmetries: Optional[list[str]] = Field(default=None) """List of paths to files containing symmetry matrices.""" - projection: str | None = Field(default=None) + projection: Optional[str] = Field(default=None) """Path to file containing projection matrix.""" def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index 4eb3d4a..e89c370 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -26,7 +26,7 @@ import logging import math from dataclasses import dataclass -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, Optional import numpy as np import numpy.typing as npt # noqa: TCH002 @@ -47,10 +47,10 @@ class GilbertAssets(CommonBaseModel): state: State """Initial state for algorithm.""" - symmetries: list[npt.NDArray[np.complex128]] | None + symmetries: Optional[list[npt.NDArray[np.complex128]]] """List of symmetries of state.""" - projection: npt.NDArray[np.complex128] | None + projection: Optional[npt.NDArray[np.complex128]] """Projection to apply to state.""" diff --git a/pyproject.toml b/pyproject.toml index feb62e8..2c25b86 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -653,7 +653,7 @@ extend-select = [ "UP004", "UP005", "UP006", - "UP007", + # "UP007", # breaks compatibility with Python <3.10 "UP008", "UP009", "UP010", From 9e9c4345332c1ae0d1151eae59e0b7c924df8353 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 7 Mar 2023 02:09:08 +0100 Subject: [PATCH 055/227] Remove other modern type annotations from models for compatibility with py 3.8 --- .github/workflows/system_tests.yaml | 2 +- cssfinder/cssfproject.py | 6 +++--- cssfinder/io/asset_loader.py | 4 ++-- pyproject.toml | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 15bd716..2d73ef4 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -1,5 +1,5 @@ # Name of the workflow. This will be displayed in the Actions tab of your repository. -name: Python package +name: System Tests # Specifies when the workflow should run. In this case, it will run on every push to the main branch and on every pull request to the main branch. on: diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index b3d279f..7684d41 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -30,7 +30,7 @@ import json import logging from pathlib import Path -from typing import TYPE_CHECKING, Any, Iterable, Optional, Union +from typing import TYPE_CHECKING, Any, Dict, Iterable, List, Optional, Union import jsonref from pydantic import ConstrainedStr, EmailStr, Field, validator @@ -48,7 +48,7 @@ class CSSFProject(CommonBaseModel): meta: Meta """Project meta information like name and author.""" - tasks: dict[str, Task] + tasks: Dict[str, Task] """List of tasks within project which can be executed.""" _file: Optional[Path] = None @@ -459,7 +459,7 @@ class RuntimeCfg(CommonBaseModel): class Resources(CommonBaseModel): """Project resources.""" - symmetries: Optional[list[str]] = Field(default=None) + symmetries: Optional[List[str]] = Field(default=None) """List of paths to files containing symmetry matrices.""" projection: Optional[str] = Field(default=None) diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py index e89c370..fd0ea60 100644 --- a/cssfinder/io/asset_loader.py +++ b/cssfinder/io/asset_loader.py @@ -26,7 +26,7 @@ import logging import math from dataclasses import dataclass -from typing import TYPE_CHECKING, Optional +from typing import TYPE_CHECKING, List, Optional import numpy as np import numpy.typing as npt # noqa: TCH002 @@ -47,7 +47,7 @@ class GilbertAssets(CommonBaseModel): state: State """Initial state for algorithm.""" - symmetries: Optional[list[npt.NDArray[np.complex128]]] + symmetries: Optional[List[npt.NDArray[np.complex128]]] """List of symmetries of state.""" projection: Optional[npt.NDArray[np.complex128]] diff --git a/pyproject.toml b/pyproject.toml index 2c25b86..77ed536 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -652,7 +652,7 @@ extend-select = [ "UP003", "UP004", "UP005", - "UP006", + # "UP006", # "UP007", # breaks compatibility with Python <3.10 "UP008", "UP009", From c249961beee19fe857b3ed295b19b4da6227a4f2 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 00:11:18 +0100 Subject: [PATCH 056/227] Add workflows for typechecking and code quality validation, improve poe tasks --- .github/dependabot.yaml | 17 +++++++++ .github/workflows/code_quality.yaml | 33 ++++++++++++++++ .github/workflows/system_tests.yaml | 28 +++----------- .github/workflows/type_check.yaml | 33 ++++++++++++++++ poetry.lock | 58 ++++++++++++++--------------- pyproject.toml | 28 +++++++++++--- 6 files changed, 141 insertions(+), 56 deletions(-) create mode 100644 .github/dependabot.yaml create mode 100644 .github/workflows/code_quality.yaml create mode 100644 .github/workflows/type_check.yaml diff --git a/.github/dependabot.yaml b/.github/dependabot.yaml new file mode 100644 index 0000000..2c98d23 --- /dev/null +++ b/.github/dependabot.yaml @@ -0,0 +1,17 @@ +version: 2 +updates: + - package-ecosystem: "pip" + directory: "/" + schedule: + interval: "daily" + + target-branch: "dev" + + labels: + - "dependencies" + + assignees: + - "Argmaster" + + reviewers: + - "Argmaster" diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml new file mode 100644 index 0000000..12af03a --- /dev/null +++ b/.github/workflows/code_quality.yaml @@ -0,0 +1,33 @@ +name: Code Quality Check + +on: + push: + branches: [main, feature/**, dependabot/**] + pull_request: + branches: [main, feature/**, dependabot/**] + +jobs: + code-quality-check: + strategy: + matrix: + os: [ubuntu-latest] + python-version: ["3.8", "3.9", "3.10"] + + runs-on: ${{ matrix.os }} + continue-on-error: true + + steps: + - name: Checkout code + uses: actions/checkout@v3.1.0 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4.5.0 + with: + python-version: ${{ matrix.python-version }} + architecture: "x64" + + - name: Install Poetry + run: pip install poetry + + - name: Test with pytest + run: poetry run mypy diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 2d73ef4..8cc41ba 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -1,55 +1,39 @@ -# Name of the workflow. This will be displayed in the Actions tab of your repository. name: System Tests -# Specifies when the workflow should run. In this case, it will run on every push to the main branch and on every pull request to the main branch. on: push: - branches: [main, feature/**] + branches: [main, feature/**, dependabot/**] pull_request: - branches: [main, feature/**] + branches: [main, feature/**, dependabot/**] + schedule: + - cron: 0 12 * * 6 -# Defines the jobs that should be run as part of this workflow. jobs: - # The name of this job. You can have multiple jobs in a workflow. - build: - # Defines a matrix of operating systems and Python versions to test against. + system-tests: strategy: matrix: os: [ubuntu-latest, windows-latest, macOS-latest] python-version: ["3.8", "3.9", "3.10"] - # Specifies which operating system to run the job on. runs-on: ${{ matrix.os }} - - # Prevents a workflow run from failing when a job fails. continue-on-error: true - # The steps that should be run as part of this job. steps: - name: Checkout code - # This step checks out your code from your repository. uses: actions/checkout@v3.1.0 - name: Set up Python ${{ matrix.python-version }} - # This step sets up the specified version of Python. - # Uses setup-python action. uses: actions/setup-python@v4.5.0 with: python-version: ${{ matrix.python-version }} architecture: "x64" - name: Install Poetry - # This step installs Poetry using pip. run: pip install poetry - - name: Install dependencies - # This step installs the dependencies specified in the Poetry lock file. - run: poetry install - - name: Generate debug numpy backend - # This step generated numpy backend with all debug options enabled. + # This step generates numpy backend with all debug options enabled. run: poetry run poe gen-numpy-impl --disable-jit --debug-dtype-checks - name: Test with pytest - # This step runs the tests using pytest. run: poetry run poe test-system diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml new file mode 100644 index 0000000..96ab258 --- /dev/null +++ b/.github/workflows/type_check.yaml @@ -0,0 +1,33 @@ +name: Type Check + +on: + push: + branches: [main, feature/**, dependabot/**] + pull_request: + branches: [main, feature/**, dependabot/**] + +jobs: + type-check: + strategy: + matrix: + os: [ubuntu-latest] + python-version: ["3.8", "3.9", "3.10"] + + runs-on: ${{ matrix.os }} + continue-on-error: true + + steps: + - name: Checkout code + uses: actions/checkout@v3.1.0 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4.5.0 + with: + python-version: ${{ matrix.python-version }} + architecture: "x64" + + - name: Install Poetry + run: pip install poetry + + - name: Test with pytest + run: poetry run poe type-check diff --git a/poetry.lock b/poetry.lock index 971492a..7a4bdf6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. 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">=1.1.0", markers = "python_version < \"3.11\""} typing-extensions = ">=3.10" diff --git a/pyproject.toml b/pyproject.toml index 77ed536..8e17c2c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,11 +45,29 @@ cssfinder = "cssfinder.cli:main" cssf = "cssfinder.cli:main" [tool.poe.tasks] -install-hooks = "pre-commit install --install-hooks --overwrite" -run-hooks = "pre-commit run --all-files -v" -build = "poetry build --format=wheel" -gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } -test-system = " poetry run pytest test/system -v --cov" +install-hooks = [ + { cmd = "poetry install --sync" }, + { cmd = "poetry run pre-commit install --install-hooks --overwrite" } +] +run-hooks = [ + { cmd = "poetry install --sync" }, + { cmd = "pre-commit run --all-files -v" } +] +build = [ + { cmd = "poetry build --format=wheel" } +] +gen-numpy-impl = [ + { cmd = "poetry install --sync" }, + { script = "scripts.gen_numpy_impl:main" } +] +test-system = [ + { cmd = "poetry install --sync" }, + { cmd = "pytest test/system -v --cov" } +] +type-check = [ + { cmd = "poetry install --sync" }, + { cmd = "mypy cssfinder test scripts" } +] [build-system] requires = ["poetry-core"] From cf150108f99063145a0035b6572626791868ffca Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 00:35:31 +0100 Subject: [PATCH 057/227] Add deployment workflow --- .github/workflows/code_quality.yaml | 7 ++-- .github/workflows/deploy_to_pypi.yaml | 46 +++++++++++++++++++++++++++ .github/workflows/system_tests.yaml | 5 ++- .github/workflows/type_check.yaml | 3 ++ pyproject.toml | 3 +- 5 files changed, 60 insertions(+), 4 deletions(-) create mode 100644 .github/workflows/deploy_to_pypi.yaml diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 12af03a..868cfb1 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -29,5 +29,8 @@ jobs: - name: Install Poetry run: pip install poetry - - name: Test with pytest - run: poetry run mypy + - name: Install dependencies + run: poetry install --sync + + - name: Run code quality checkers + run: poetry run poe run-hooks diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml new file mode 100644 index 0000000..f2a8cd9 --- /dev/null +++ b/.github/workflows/deploy_to_pypi.yaml @@ -0,0 +1,46 @@ +# https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ +name: Publish CSSFinder distributions 📦 to PyPI and Test PyPI + +on: + push: + tags: + - "v*" + branches: + - "main" + +jobs: + deploy-to-pypi: + name: Build and publish CSSfinder distributions 📦 to PyPI and Test PyPI + runs-on: ubuntu-latest + + steps: + - name: Checkout code + uses: actions/checkout@v3.1.0 + + - name: Set up Python 3.10 + uses: actions/setup-python@v4.5.0 + with: + python-version: "3.10" + architecture: "x64" + + - name: Install Poetry + run: pip install poetry + + - name: Install dependencies + run: poetry install --sync + + - name: Build distribution 📦 + run: poetry run poe build + + - name: Publish distribution 📦 to Test PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository_url: https://test.pypi.org/legacy/ + + - name: Publish distribution 📦 to PyPI + # but only if the current commit is tagged. + if: startsWith(github.ref, 'refs/tags') + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 8cc41ba..bcd185c 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -31,9 +31,12 @@ jobs: - name: Install Poetry run: pip install poetry + - name: Install dependencies + run: poetry install --sync + - name: Generate debug numpy backend # This step generates numpy backend with all debug options enabled. run: poetry run poe gen-numpy-impl --disable-jit --debug-dtype-checks - - name: Test with pytest + - name: Run static type checker run: poetry run poe test-system diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 96ab258..4bda270 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -29,5 +29,8 @@ jobs: - name: Install Poetry run: pip install poetry + - name: Install dependencies + run: poetry install --sync + - name: Test with pytest run: poetry run poe type-check diff --git a/pyproject.toml b/pyproject.toml index 8e17c2c..834bdf4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,8 @@ run-hooks = [ { cmd = "pre-commit run --all-files -v" } ] build = [ - { cmd = "poetry build --format=wheel" } + { cmd = "poetry build --format=wheel" }, + { cmd = "poetry build --format=sdist" } ] gen-numpy-impl = [ { cmd = "poetry install --sync" }, From 1e7f7f9e8095c31c46fe6e06e49d0692b52e6109 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 00:38:09 +0100 Subject: [PATCH 058/227] Disable code quality checks on python 3.8 due to lack of hook compatibility --- .github/workflows/code_quality.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 868cfb1..8e32250 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -11,7 +11,7 @@ jobs: strategy: matrix: os: [ubuntu-latest] - python-version: ["3.8", "3.9", "3.10"] + python-version: ["3.9", "3.10"] runs-on: ${{ matrix.os }} continue-on-error: true From 7708a53101f3bccf8f5cc227167ed53a21661ee6 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 00:39:36 +0100 Subject: [PATCH 059/227] Make gen-numpy-impl task accept arguments --- pyproject.toml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 834bdf4..6a7baa4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,10 +57,7 @@ build = [ { cmd = "poetry build --format=wheel" }, { cmd = "poetry build --format=sdist" } ] -gen-numpy-impl = [ - { cmd = "poetry install --sync" }, - { script = "scripts.gen_numpy_impl:main" } -] +gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } test-system = [ { cmd = "poetry install --sync" }, { cmd = "pytest test/system -v --cov" } From e5500d2b31cffb846a66eae4c44e9c031e63f533 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 01:34:11 +0100 Subject: [PATCH 060/227] Improve workflow triggers --- .github/workflows/code_quality.yaml | 33 ++++++++++++++++++++++++--- .github/workflows/deploy_to_pypi.yaml | 1 + .github/workflows/system_tests.yaml | 31 ++++++++++++++++++++++--- .github/workflows/type_check.yaml | 33 ++++++++++++++++++++++++--- 4 files changed, 89 insertions(+), 9 deletions(-) diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 8e32250..5f5d4fe 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -2,19 +2,46 @@ name: Code Quality Check on: push: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + pull_request: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + types: + - opened + - reopened + + schedule: + - cron: 0 12 * * 6 + + workflow_dispatch: + +concurrency: + group: ${{ github.workflow_ref }}-${{ github.ref }}-code-quality + cancel-in-progress: true jobs: code-quality-check: strategy: + fail-fast: true matrix: os: [ubuntu-latest] python-version: ["3.9", "3.10"] runs-on: ${{ matrix.os }} - continue-on-error: true steps: - name: Checkout code diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index f2a8cd9..77a035d 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -5,6 +5,7 @@ on: push: tags: - "v*" + branches: - "main" diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index bcd185c..482b117 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -2,21 +2,46 @@ name: System Tests on: push: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + pull_request: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + types: + - opened + - reopened + schedule: - cron: 0 12 * * 6 + workflow_dispatch: + +concurrency: + group: ${{ github.workflow_ref }}-${{ github.ref }}-system-tests + cancel-in-progress: true + jobs: system-tests: strategy: + fail-fast: true matrix: os: [ubuntu-latest, windows-latest, macOS-latest] python-version: ["3.8", "3.9", "3.10"] runs-on: ${{ matrix.os }} - continue-on-error: true steps: - name: Checkout code diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 4bda270..dd076fd 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -2,19 +2,46 @@ name: Type Check on: push: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + pull_request: - branches: [main, feature/**, dependabot/**] + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + types: + - opened + - reopened + + schedule: + - cron: 0 12 * * 6 + + workflow_dispatch: + +concurrency: + group: ${{ github.workflow_ref }}-${{ github.ref }}-type-check + cancel-in-progress: true jobs: type-check: strategy: + fail-fast: false matrix: os: [ubuntu-latest] python-version: ["3.8", "3.9", "3.10"] runs-on: ${{ matrix.os }} - continue-on-error: true steps: - name: Checkout code From 181db30419e5e1ad54b8eca25fc3b5d5cad0436e Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 01:49:13 +0100 Subject: [PATCH 061/227] Fix README --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 0fae03f..20ed7c6 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ -
-

CSSFinder

-
+# CSSFinder + +Closest separable state finder. ## Installing @@ -94,7 +94,7 @@ Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.1.0 cycler-0.11.0 But `cssfinder-0.1.0` should be included in this list. -## Code changes +## Code quality To ensure that all code follow same style guidelines and code quality rules, multiple static analysis tools are used. For simplicity, all of them are From 854ca244f982760783d8da7212554cc456d98c72 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 01:51:53 +0100 Subject: [PATCH 062/227] Change reporitory link --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 6a7baa4..b4ef24d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,7 +6,7 @@ authors = [ "Krzysztof Wiśniewski ", "Marcin Wieśniak ", ] -repository = "https://github.com/wiesnim9/CSSFinder" +repository = "https://github.com/argmaster/CSSFinder" readme = "README.md" [tool.poetry.dependencies] # ANCHOR: tool.poetry.dependencies From 2ddde7dd5cf24d464a544ecd3d7c0c7f83a157a4 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 16:42:43 +0100 Subject: [PATCH 063/227] Improve release drafting, add file based label configuration --- .github/dependabot.yaml | 1 + .github/labels.yaml | 69 +++++++++++++++++++++++++++ .github/release-drafter.yaml | 34 +++++++++++++ .github/workflows/code_quality.yaml | 1 + .github/workflows/deploy_to_pypi.yaml | 38 ++++++++++++--- .github/workflows/labeler.yaml | 19 ++++++++ .github/workflows/system_tests.yaml | 1 + .github/workflows/type_check.yaml | 1 + CHANGELOG.md | 17 +++++++ pyproject.toml | 12 ++--- 10 files changed, 181 insertions(+), 12 deletions(-) create mode 100644 .github/labels.yaml create mode 100644 .github/release-drafter.yaml create mode 100644 .github/workflows/labeler.yaml create mode 100644 CHANGELOG.md diff --git a/.github/dependabot.yaml b/.github/dependabot.yaml index 2c98d23..8d1bcf8 100644 --- a/.github/dependabot.yaml +++ b/.github/dependabot.yaml @@ -1,3 +1,4 @@ +--- version: 2 updates: - package-ecosystem: "pip" diff --git a/.github/labels.yaml b/.github/labels.yaml new file mode 100644 index 0000000..f5bf73f --- /dev/null +++ b/.github/labels.yaml @@ -0,0 +1,69 @@ +--- +# Labels names are important as they are used by Release Drafter to decide +# regarding where to record them in changelog or if to skip them. +# +# The repository labels will be automatically configured using this file and +# the GitHub Action https://github.com/marketplace/actions/github-labeler. +- name: breaking + description: Breaking Changes + color: "bfd4f2" +- name: bug + description: Something isn't working + color: "d73a4a" +- name: build + description: Build System and Dependencies + color: "bfdadc" +- name: ci + description: Continuous Integration + color: "4a97d6" +- name: dependencies + description: Pull requests that update a dependency file + color: "0366d6" +- name: documentation + description: Improvements or additions to documentation + color: "0075ca" +- name: duplicate + description: This issue or pull request already exists + color: "cfd3d7" +- name: enhancement + description: New feature or request + color: "a2eeef" +- name: github_actions + description: Pull requests that update Github_actions code + color: "000000" +- name: good first issue + description: Good for newcomers + color: "7057ff" +- name: help wanted + description: Extra attention is needed + color: "008672" +- name: invalid + description: This doesn't seem right + color: "e4e669" +- name: performance + description: Performance + color: "016175" +- name: python + description: Pull requests that update Python code + color: "2b67c6" +- name: question + description: Further information is requested + color: "d876e3" +- name: refactoring + description: Refactoring + color: "ef67c4" +- name: removal + description: Removals and deprecations + color: "9ae7ea" +- name: style + description: Style + color: "c120e5" +- name: testing + description: Testing + color: "b1fc6f" +- name: wontfix + description: This will not be worked on + color: "ffffff" +- name: skip-changelog + description: This will not be added to release notes + color: "dddddd" diff --git a/.github/release-drafter.yaml b/.github/release-drafter.yaml new file mode 100644 index 0000000..c85211e --- /dev/null +++ b/.github/release-drafter.yaml @@ -0,0 +1,34 @@ +--- +template: | + ## Changes + $CHANGES +categories: + - title: ":boom: Breaking Changes" + label: "breaking" + - title: ":rocket: Features" + label: "enhancement" + - title: ":fire: Removals and Deprecations" + label: "removal" + - title: ":beetle: Fixes" + label: "bug" + - title: ":raising_hand: Help wanted" + label: "help wanted" + - title: ":racehorse: Performance" + label: "performance" + - title: ":rotating_light: Testing" + label: "testing" + - title: ":construction_worker: Continuous Integration" + label: "ci" + - title: ":books: Documentation" + label: "documentation" + - title: ":hammer: Refactoring" + label: "refactoring" + - title: ":lipstick: Style" + label: "style" + - title: ":package: Dependencies" + labels: + - "dependencies" + - "build" + +exclude-labels: + - "skip-changelog" diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 5f5d4fe..60535cc 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -1,3 +1,4 @@ +--- name: Code Quality Check on: diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index 77a035d..9b54385 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -1,3 +1,4 @@ +--- # https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ name: Publish CSSFinder distributions 📦 to PyPI and Test PyPI @@ -5,18 +6,20 @@ on: push: tags: - "v*" - branches: - - "main" + - dev jobs: deploy-to-pypi: + if: github.repository_owner == 'Argmaster' name: Build and publish CSSfinder distributions 📦 to PyPI and Test PyPI runs-on: ubuntu-latest steps: - name: Checkout code uses: actions/checkout@v3.1.0 + with: + fetch-depth: 2 - name: Set up Python 3.10 uses: actions/setup-python@v4.5.0 @@ -30,18 +33,41 @@ jobs: - name: Install dependencies run: poetry install --sync + - name: Bump version for developmental release + if: ( !startsWith(github.ref, 'refs/tags') ) + run: | + poetry version patch && + version=$(poetry version | awk '{ print $2 }') && + poetry version $version-dev.$(date +%s) + + - name: Detect and tag new version + id: check-version + uses: salsify/action-detect-and-tag-new-version@v2 + with: + version-command: | + bash -o pipefail -c "poetry version | awk '{ print \$2 }'" + - name: Build distribution 📦 run: poetry run poe build + - name: Publish distribution 📦 to PyPI + # but only if the current commit is tagged. + if: startsWith(github.ref, 'refs/tags') + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.PYPI_API_TOKEN }} + - name: Publish distribution 📦 to Test PyPI uses: pypa/gh-action-pypi-publish@release/v1 with: password: ${{ secrets.TEST_PYPI_API_TOKEN }} repository_url: https://test.pypi.org/legacy/ - - name: Publish distribution 📦 to PyPI - # but only if the current commit is tagged. + - name: Publish the release notes if: startsWith(github.ref, 'refs/tags') - uses: pypa/gh-action-pypi-publish@release/v1 + uses: release-drafter/release-drafter@v5 with: - password: ${{ secrets.PYPI_API_TOKEN }} + publish: ${{ steps.check-version.outputs.tag != '' }} + tag: ${{ steps.check-version.outputs.tag }} + env: + GITHUB_TOKEN: ${{ secrets.REPO_ACCESS_TOKEN }} diff --git a/.github/workflows/labeler.yaml b/.github/workflows/labeler.yaml new file mode 100644 index 0000000..45c8713 --- /dev/null +++ b/.github/workflows/labeler.yaml @@ -0,0 +1,19 @@ +--- +name: Labeler + +"on": + push: + branches: + - main + +jobs: + labeler: + runs-on: ubuntu-latest + steps: + - name: Check out the repository + uses: actions/checkout@v3 + + - name: Run Labeler + uses: crazy-max/ghaction-github-labeler@v4 + with: + skip-delete: false diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 482b117..cfdaa9a 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -1,3 +1,4 @@ +--- name: System Tests on: diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index dd076fd..b0d9e38 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -1,3 +1,4 @@ +--- name: Type Check on: diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..9dc219c --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,17 @@ +# Changelog + +NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. + +### 0.1.0 [in progress] + +- Add project based execution using `cssfproject.json` file. + +- Add report generation for projects with + `cssfinder project task-report ` command. + +- Add fully separable state for n quDits (`FSnQd`) mode. + +- Add backend based on numpy with single (32 bit float) and double (64 bit + float) precision. + +- Add CI system with tests, quality checks and automated deployments. diff --git a/pyproject.toml b/pyproject.toml index b4ef24d..af45d60 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -46,24 +46,24 @@ cssf = "cssfinder.cli:main" [tool.poe.tasks] install-hooks = [ - { cmd = "poetry install --sync" }, + { cmd = "poetry install --sync --no-ansi" }, { cmd = "poetry run pre-commit install --install-hooks --overwrite" } ] run-hooks = [ - { cmd = "poetry install --sync" }, + { cmd = "poetry install --sync --no-ansi" }, { cmd = "pre-commit run --all-files -v" } ] build = [ - { cmd = "poetry build --format=wheel" }, - { cmd = "poetry build --format=sdist" } + { cmd = "poetry build --format=wheel --no-ansi" }, + { cmd = "poetry build --format=sdist --no-ansi" } ] gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } test-system = [ - { cmd = "poetry install --sync" }, + { cmd = "poetry install --sync --no-ansi" }, { cmd = "pytest test/system -v --cov" } ] type-check = [ - { cmd = "poetry install --sync" }, + { cmd = "poetry install --sync --no-ansi" }, { cmd = "mypy cssfinder test scripts" } ] From 9a63d4fd426051df7dcdcec0c5219abba4ea0eef Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 17:45:57 +0100 Subject: [PATCH 064/227] Improve deploy action --- .github/workflows/deploy_to_pypi.yaml | 37 +++++++++++++++++---------- .github/workflows/labeler.yaml | 1 + 2 files changed, 24 insertions(+), 14 deletions(-) diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index 9b54385..a48c979 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -18,56 +18,65 @@ jobs: steps: - name: Checkout code uses: actions/checkout@v3.1.0 - with: - fetch-depth: 2 - name: Set up Python 3.10 + uses: actions/setup-python@v4.5.0 with: python-version: "3.10" architecture: "x64" - - name: Install Poetry + - name: Install Poetry 📜 run: pip install poetry - - name: Install dependencies + - name: Install dependencies 🗄️ run: poetry install --sync - - name: Bump version for developmental release + - name: Bump Version for development 🔨 release + # Executed only for dev branch push if: ( !startsWith(github.ref, 'refs/tags') ) run: | poetry version patch && version=$(poetry version | awk '{ print $2 }') && poetry version $version-dev.$(date +%s) - - name: Detect and tag new version - id: check-version - uses: salsify/action-detect-and-tag-new-version@v2 + - name: Detect Version of project + id: project-version + run: | + echo "::set-output name=version::$(poetry version | awk '{ print $2 }')" + + - name: Create development 🔨 Tag 🏷️ + # Executed only for dev branch push + if: ( !startsWith(github.ref, 'refs/tags') ) + id: tag-version + uses: mathieudutour/github-tag-action@v6.1 with: - version-command: | - bash -o pipefail -c "poetry version | awk '{ print \$2 }'" + custom_tag: ${{ steps.project-version.outputs.version }} + github_token: ${{ secrets.REPO_ACCESS_TOKEN }} - name: Build distribution 📦 run: poetry run poe build - name: Publish distribution 📦 to PyPI - # but only if the current commit is tagged. + # Executed only for version tag push event if: startsWith(github.ref, 'refs/tags') uses: pypa/gh-action-pypi-publish@release/v1 with: password: ${{ secrets.PYPI_API_TOKEN }} - name: Publish distribution 📦 to Test PyPI + # Executed always uses: pypa/gh-action-pypi-publish@release/v1 with: password: ${{ secrets.TEST_PYPI_API_TOKEN }} repository_url: https://test.pypi.org/legacy/ - - name: Publish the release notes + - name: Publish the release notes 📝 + # Executed only for version tag push event if: startsWith(github.ref, 'refs/tags') uses: release-drafter/release-drafter@v5 with: - publish: ${{ steps.check-version.outputs.tag != '' }} - tag: ${{ steps.check-version.outputs.tag }} + publish: ${{ steps.project-version.outputs.version != '' }} + tag: ${{ steps.tag-version.outputs.new_tag }} env: GITHUB_TOKEN: ${{ secrets.REPO_ACCESS_TOKEN }} diff --git a/.github/workflows/labeler.yaml b/.github/workflows/labeler.yaml index 45c8713..8e3d4d8 100644 --- a/.github/workflows/labeler.yaml +++ b/.github/workflows/labeler.yaml @@ -4,6 +4,7 @@ name: Labeler "on": push: branches: + - dev - main jobs: From 925fc72754908e13cc583f446cc68870458ff590 Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 8 Mar 2023 18:02:55 +0100 Subject: [PATCH 065/227] Fix deploy trigger conditions --- .github/workflows/deploy_to_pypi.yaml | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index a48c979..9ef4626 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -34,7 +34,7 @@ jobs: - name: Bump Version for development 🔨 release # Executed only for dev branch push - if: ( !startsWith(github.ref, 'refs/tags') ) + if: endsWith(github.ref, 'dev') == true run: | poetry version patch && version=$(poetry version | awk '{ print $2 }') && @@ -43,11 +43,11 @@ jobs: - name: Detect Version of project id: project-version run: | - echo "::set-output name=version::$(poetry version | awk '{ print $2 }')" + echo "version=$(poetry version | awk '{ print $2 }')" >> $GITHUB_OUTPUT - name: Create development 🔨 Tag 🏷️ # Executed only for dev branch push - if: ( !startsWith(github.ref, 'refs/tags') ) + if: endsWith(github.ref, 'dev') == true id: tag-version uses: mathieudutour/github-tag-action@v6.1 with: @@ -59,24 +59,24 @@ jobs: - name: Publish distribution 📦 to PyPI # Executed only for version tag push event - if: startsWith(github.ref, 'refs/tags') + if: endsWith(github.ref, 'dev') == false uses: pypa/gh-action-pypi-publish@release/v1 with: password: ${{ secrets.PYPI_API_TOKEN }} - - name: Publish distribution 📦 to Test PyPI - # Executed always - uses: pypa/gh-action-pypi-publish@release/v1 - with: - password: ${{ secrets.TEST_PYPI_API_TOKEN }} - repository_url: https://test.pypi.org/legacy/ - - name: Publish the release notes 📝 # Executed only for version tag push event - if: startsWith(github.ref, 'refs/tags') + if: endsWith(github.ref, 'dev') == false uses: release-drafter/release-drafter@v5 with: publish: ${{ steps.project-version.outputs.version != '' }} tag: ${{ steps.tag-version.outputs.new_tag }} env: GITHUB_TOKEN: ${{ secrets.REPO_ACCESS_TOKEN }} + + - name: Publish distribution 📦 to Test PyPI + # Executed always + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository_url: https://test.pypi.org/legacy/ From 29006cd0967c65da0924b5d21d20abe933861b6e Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 9 Mar 2023 00:48:46 +0100 Subject: [PATCH 066/227] Simplify deployment workflows --- .github/labels.yaml | 69 ---------------------- .github/workflows/deploy_to_pypi.yaml | 45 ++------------ .github/workflows/deploy_to_test_pypi.yaml | 59 ++++++++++++++++++ .github/workflows/labeler.yaml | 20 ------- 4 files changed, 63 insertions(+), 130 deletions(-) delete mode 100644 .github/labels.yaml create mode 100644 .github/workflows/deploy_to_test_pypi.yaml delete mode 100644 .github/workflows/labeler.yaml diff --git a/.github/labels.yaml b/.github/labels.yaml deleted file mode 100644 index f5bf73f..0000000 --- a/.github/labels.yaml +++ /dev/null @@ -1,69 +0,0 @@ ---- -# Labels names are important as they are used by Release Drafter to decide -# regarding where to record them in changelog or if to skip them. -# -# The repository labels will be automatically configured using this file and -# the GitHub Action https://github.com/marketplace/actions/github-labeler. -- name: breaking - description: Breaking Changes - color: "bfd4f2" -- name: bug - description: Something isn't working - color: "d73a4a" -- name: build - description: Build System and Dependencies - color: "bfdadc" -- name: ci - description: Continuous Integration - color: "4a97d6" -- name: dependencies - description: Pull requests that update a dependency file - color: "0366d6" -- name: documentation - description: Improvements or additions to documentation - color: "0075ca" -- name: duplicate - description: This issue or pull request already exists - color: "cfd3d7" -- name: enhancement - description: New feature or request - color: "a2eeef" -- name: github_actions - description: Pull requests that update Github_actions code - color: "000000" -- name: good first issue - description: Good for newcomers - color: "7057ff" -- name: help wanted - description: Extra attention is needed - color: "008672" -- name: invalid - description: This doesn't seem right - color: "e4e669" -- name: performance - description: Performance - color: "016175" -- name: python - description: Pull requests that update Python code - color: "2b67c6" -- name: question - description: Further information is requested - color: "d876e3" -- name: refactoring - description: Refactoring - color: "ef67c4" -- name: removal - description: Removals and deprecations - color: "9ae7ea" -- name: style - description: Style - color: "c120e5" -- name: testing - description: Testing - color: "b1fc6f" -- name: wontfix - description: This will not be worked on - color: "ffffff" -- name: skip-changelog - description: This will not be added to release notes - color: "dddddd" diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index 9ef4626..7d0704a 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -1,18 +1,16 @@ --- # https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ -name: Publish CSSFinder distributions 📦 to PyPI and Test PyPI +name: Publish 📦 to PyPI on: push: tags: - "v*" - branches: - - dev jobs: deploy-to-pypi: if: github.repository_owner == 'Argmaster' - name: Build and publish CSSfinder distributions 📦 to PyPI and Test PyPI + name: Deploy 📦 runs-on: ubuntu-latest steps: @@ -32,51 +30,16 @@ jobs: - name: Install dependencies 🗄️ run: poetry install --sync - - name: Bump Version for development 🔨 release - # Executed only for dev branch push - if: endsWith(github.ref, 'dev') == true - run: | - poetry version patch && - version=$(poetry version | awk '{ print $2 }') && - poetry version $version-dev.$(date +%s) + - name: Build distribution 📦 + run: poetry run poe build - name: Detect Version of project id: project-version run: | echo "version=$(poetry version | awk '{ print $2 }')" >> $GITHUB_OUTPUT - - name: Create development 🔨 Tag 🏷️ - # Executed only for dev branch push - if: endsWith(github.ref, 'dev') == true - id: tag-version - uses: mathieudutour/github-tag-action@v6.1 - with: - custom_tag: ${{ steps.project-version.outputs.version }} - github_token: ${{ secrets.REPO_ACCESS_TOKEN }} - - - name: Build distribution 📦 - run: poetry run poe build - - name: Publish distribution 📦 to PyPI # Executed only for version tag push event - if: endsWith(github.ref, 'dev') == false uses: pypa/gh-action-pypi-publish@release/v1 with: password: ${{ secrets.PYPI_API_TOKEN }} - - - name: Publish the release notes 📝 - # Executed only for version tag push event - if: endsWith(github.ref, 'dev') == false - uses: release-drafter/release-drafter@v5 - with: - publish: ${{ steps.project-version.outputs.version != '' }} - tag: ${{ steps.tag-version.outputs.new_tag }} - env: - GITHUB_TOKEN: ${{ secrets.REPO_ACCESS_TOKEN }} - - - name: Publish distribution 📦 to Test PyPI - # Executed always - uses: pypa/gh-action-pypi-publish@release/v1 - with: - password: ${{ secrets.TEST_PYPI_API_TOKEN }} - repository_url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml new file mode 100644 index 0000000..c87d641 --- /dev/null +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -0,0 +1,59 @@ +--- +# https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ +name: Publish 📦 to Test PyPI + +on: + push: + branches: + - dev + +jobs: + deploy-to-pypi: + if: github.repository_owner == 'Argmaster' + name: Test deploy 📦 + runs-on: ubuntu-latest + + steps: + - name: Checkout code + uses: actions/checkout@v3.1.0 + + - name: Set up Python 3.10 + + uses: actions/setup-python@v4.5.0 + with: + python-version: "3.10" + architecture: "x64" + + - name: Install Poetry 📜 + run: pip install poetry + + - name: Install dependencies 🗄️ + run: poetry install --sync + + - name: Build distribution 📦 + run: poetry run poe build + + - name: Bump Version for development 🔨 release + run: | + poetry version patch && + version=$(poetry version | awk '{ print $2 }') && + poetry version $version-dev.$(date +%s) + + - name: Detect Version of project + id: project-version + run: | + echo "version=$(poetry version | awk '{ print $2 }')" >> $GITHUB_OUTPUT + + - name: Create development 🔨 Tag 🏷️ + id: tag-version + uses: mathieudutour/github-tag-action@v6.1 + with: + custom_tag: ${{ steps.project-version.outputs.version }} + github_token: ${{ secrets.REPO_ACCESS_TOKEN }} + + - name: Publish distribution 📦 to Test PyPI + # Executed always + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository_url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/labeler.yaml b/.github/workflows/labeler.yaml deleted file mode 100644 index 8e3d4d8..0000000 --- a/.github/workflows/labeler.yaml +++ /dev/null @@ -1,20 +0,0 @@ ---- -name: Labeler - -"on": - push: - branches: - - dev - - main - -jobs: - labeler: - runs-on: ubuntu-latest - steps: - - name: Check out the repository - uses: actions/checkout@v3 - - - name: Run Labeler - uses: crazy-max/ghaction-github-labeler@v4 - with: - skip-delete: false From 38506ac68a45b464d71ef2ec3ef563329135eb98 Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 9 Mar 2023 00:52:00 +0100 Subject: [PATCH 067/227] Add paths selector to system tests push trigger --- .github/workflows/system_tests.yaml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index cfdaa9a..c911f61 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -11,6 +11,11 @@ on: - feature/** - release/** - dependabot/** + paths: + - cssfinder/** + - test/** + - poetry.lock + - .github/workflows/system_tests.yaml pull_request: branches: From 80c564728d75526d7b90507b6c0150cf07f71c31 Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 9 Mar 2023 01:00:45 +0100 Subject: [PATCH 068/227] =?UTF-8?q?Add=20more=20strict=20selector=20to=20P?= =?UTF-8?q?ublish=20=F0=9F=93=A6=20to=20PyPI=20workflow?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .github/workflows/deploy_to_pypi.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index 7d0704a..6f03768 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -5,7 +5,8 @@ name: Publish 📦 to PyPI on: push: tags: - - "v*" + - "v[0-9]+.[0-9]+.[0-9]+" + - "!*-dev.*" jobs: deploy-to-pypi: From 69bf721ee7ecc9afd60980f5fe896ba5a9531851 Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 9 Mar 2023 01:03:05 +0100 Subject: [PATCH 069/227] Move package build below dev version bump --- .github/workflows/deploy_to_test_pypi.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index c87d641..8876648 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -30,15 +30,15 @@ jobs: - name: Install dependencies 🗄️ run: poetry install --sync - - name: Build distribution 📦 - run: poetry run poe build - - name: Bump Version for development 🔨 release run: | poetry version patch && version=$(poetry version | awk '{ print $2 }') && poetry version $version-dev.$(date +%s) + - name: Build distribution 📦 + run: poetry run poe build + - name: Detect Version of project id: project-version run: | From 5e87075d19e6f5d546846c7f7820370e8f617bc3 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 9 Mar 2023 04:10:47 +0000 Subject: [PATCH 070/227] Bump pre-commit from 2.21.0 to 3.1.1 Bumps [pre-commit](https://github.com/pre-commit/pre-commit) from 2.21.0 to 3.1.1. - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](https://github.com/pre-commit/pre-commit/compare/v2.21.0...v3.1.1) --- updated-dependencies: - dependency-name: pre-commit dependency-type: direct:development update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- poetry.lock | 10 +++++----- pyproject.toml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7a4bdf6..53c8ab2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1875,14 +1875,14 @@ poetry-core = ">=1.3.0,<2.0.0" [[package]] name = "pre-commit" -version = "2.21.0" +version = "3.1.1" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "pre_commit-2.21.0-py2.py3-none-any.whl", hash = "sha256:e2f91727039fc39a92f58a588a25b87f936de6567eed4f0e673e0507edc75bad"}, - {file = "pre_commit-2.21.0.tar.gz", hash = "sha256:31ef31af7e474a8d8995027fefdfcf509b5c913ff31f2015b4ec4beb26a6f658"}, + {file = "pre_commit-3.1.1-py2.py3-none-any.whl", hash = "sha256:b80254e60668e1dd1f5c03a1c9e0413941d61f568a57d745add265945f65bfe8"}, + {file = "pre_commit-3.1.1.tar.gz", hash = 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"sha256:cf95adb0d1671fc38d8c43dd921ad5814a735e7d9b4d9e437c088002863854fd"}, ] [package.dependencies] From f4f6cab1d8f1d15ca29fa4cc1a7d5b98c078d867 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Thu, 9 Mar 2023 10:42:00 +0100 Subject: [PATCH 072/227] Update deploy workflow tag token --- .github/workflows/deploy_to_test_pypi.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index 8876648..21b3eed 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -49,7 +49,7 @@ jobs: uses: mathieudutour/github-tag-action@v6.1 with: custom_tag: ${{ steps.project-version.outputs.version }} - github_token: ${{ secrets.REPO_ACCESS_TOKEN }} + github_token: ${{ secrets.GITHUB_TOKEN }} - name: Publish distribution 📦 to Test PyPI # Executed always From 48ee403993985ce47e305ef697926c3e5f51ecef Mon Sep 17 00:00:00 2001 From: argmaster Date: Thu, 9 Mar 2023 23:40:45 +0100 Subject: [PATCH 073/227] Fix SBiPi mode with given system dimensions --- .../backend/numpy/_impl/_complex128.py | 22 ++--- .../backend/numpy/_impl/_complex64.py | 22 ++--- cssfinder/algorithm/backend/numpy/base.py | 6 +- examples/proj/cssfproject.json | 30 +++++- scripts/gen_numpy_impl.py | 6 +- scripts/templates/numpy.pyjinja2 | 91 +++++++++++-------- 6 files changed, 105 insertions(+), 72 deletions(-) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index a94f89f..28c460f 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -112,7 +112,7 @@ def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: return retval # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def kronecker( mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] ) -> npt.NDArray[np.complex128]: @@ -150,13 +150,13 @@ def rotate( # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 -@jit(forceobj=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def optimize_d_fs( new_state: npt.NDArray[np.complex128], visibility_state: npt.NDArray[np.complex128], depth: int, quantity: int, - epochs: int, + updates_count: int, ) -> npt.NDArray[np.complex128]: """Optimize implementation for FSnQd mode.""" product_2_3 = product(new_state, visibility_state) @@ -166,7 +166,7 @@ def optimize_d_fs( rotated_2 = rotate(new_state, unitary) - for idx in range(epochs): + for idx in range(updates_count): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) @@ -187,7 +187,7 @@ def optimize_d_fs( return rotated_2.astype(np.complex128, copy=False) # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex128]: @@ -228,7 +228,7 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: return vector # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def expand_d_fs( value: npt.NDArray[np.complex128], depth: int, @@ -261,17 +261,15 @@ def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Draw random biseparable state.""" random_vector_1 = normalize(get_random_haar_1d(depth)) random_vector_2 = normalize(get_random_haar_1d(quantity)) - print(random_vector_1.shape) - print(random_vector_2.shape) - vector = np.outer(random_vector_1, random_vector_2) + vector = np.outer(random_vector_1, random_vector_2).flatten() vector = project(vector) return vector # type: ignore[no-any-return] -@jit(nopython=True, nogil=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Draw random unitary for biseparable state.""" random_vector = normalize(get_random_haar_1d(depth)) @@ -289,7 +287,7 @@ def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: return retval # type: ignore[no-any-return] -@jit(nopython=True, nogil=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex128]: """Draw random unitary for biseparable state.""" random_vector = normalize(get_random_haar_1d(depth)) @@ -307,7 +305,7 @@ def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.compl return retval # type: ignore[no-any-return] -@jit(forceobj=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def optimize_bs( new_state: npt.NDArray[np.complex128], visibility_state: npt.NDArray[np.complex128], diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 1dab235..9d587c7 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -116,7 +116,7 @@ def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: return retval # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def kronecker( mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] ) -> npt.NDArray[np.complex64]: @@ -154,13 +154,13 @@ def rotate( # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 -@jit(forceobj=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def optimize_d_fs( new_state: npt.NDArray[np.complex64], visibility_state: npt.NDArray[np.complex64], depth: int, quantity: int, - epochs: int, + updates_count: int, ) -> npt.NDArray[np.complex64]: """Optimize implementation for FSnQd mode.""" product_2_3 = product(new_state, visibility_state) @@ -170,7 +170,7 @@ def optimize_d_fs( rotated_2 = rotate(new_state, unitary) - for idx in range(epochs): + for idx in range(updates_count): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) @@ -191,7 +191,7 @@ def optimize_d_fs( return rotated_2.astype(np.complex64, copy=False) # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[np.complex64]: @@ -232,7 +232,7 @@ def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: return vector # type: ignore[no-any-return] -@jit(forceobj=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def expand_d_fs( value: npt.NDArray[np.complex64], depth: int, @@ -265,17 +265,15 @@ def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Draw random biseparable state.""" random_vector_1 = normalize(get_random_haar_1d(depth)) random_vector_2 = normalize(get_random_haar_1d(quantity)) - print(random_vector_1.shape) - print(random_vector_2.shape) - vector = np.outer(random_vector_1, random_vector_2) + vector = np.outer(random_vector_1, random_vector_2).flatten() vector = project(vector) return vector # type: ignore[no-any-return] -@jit(nopython=True, nogil=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Draw random unitary for biseparable state.""" random_vector = normalize(get_random_haar_1d(depth)) @@ -293,7 +291,7 @@ def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: return retval # type: ignore[no-any-return] -@jit(nopython=True, nogil=True, cache=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex64]: """Draw random unitary for biseparable state.""" random_vector = normalize(get_random_haar_1d(depth)) @@ -311,7 +309,7 @@ def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.compl return retval # type: ignore[no-any-return] -@jit(forceobj=True) +@jit(nopython=False, forceobj=True, cache=True, looplift=False) def optimize_bs( new_state: npt.NDArray[np.complex64], visibility_state: npt.NDArray[np.complex64], diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index d27cf0c..1fbb618 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -92,11 +92,11 @@ def __init__( def jit(self) -> None: """JIT compile performance critical parts of backend with numba.""" + return _update_state = jit( # type: ignore[assignment] forceobj=True, cache=True, looplift=False, - inline="always", )( self.__class__._update_state, # noqa: SLF001 ) @@ -150,8 +150,6 @@ def run_epoch(self, iterations: int, epoch_index: int) -> None: alternative_state = self.impl.random_d_fs(depth, quantity) elif self.mode == AlgoMode.SBiPa: alternative_state = self.impl.random_bs(depth, quantity) - else: - raise TypeError(self.mode) if ( self.impl.product(alternative_state, self._visibility_reduced) @@ -192,8 +190,6 @@ def _update_state( # noqa: PLR0913 quantity, epochs, ) - else: - raise TypeError(self.mode) aa3: SECONDARY_co = self.impl.product(alternative_state, alternative_state) aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) diff --git a/examples/proj/cssfproject.json b/examples/proj/cssfproject.json index 6d0de90..f61a7d0 100644 --- a/examples/proj/cssfproject.json +++ b/examples/proj/cssfproject.json @@ -11,7 +11,7 @@ "process_pool_size": "auto" }, "tasks": { - "0": { + "main": { "gilbert": { "mode": "SBiPi", "backend": { @@ -26,12 +26,34 @@ }, "state": { "file": "{project.directory}/proj_in.mtx", - "depth": null, - "quantity": null + "depth": 3, + "quantity": 3 }, "resources": { "symmetries": null, - "projection": null + "projection": "{project.directory}/proj_proj.mtx" + } + } + }, + "test_sbipi_proj": { + "gilbert": { + "mode": { + "$ref": "#/tasks/main/gilbert/mode" + }, + "backend": { + "$ref": "#/tasks/main/gilbert/backend" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 10, + "iters_per_epoch": 10, + "max_corrections": 10 + }, + "state": { + "$ref": "#/tasks/main/gilbert/state" + }, + "resources": { + "$ref": "#/tasks/main/gilbert/resources" } } } diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py index 9faf8cf..0bb18e2 100644 --- a/scripts/gen_numpy_impl.py +++ b/scripts/gen_numpy_impl.py @@ -24,6 +24,8 @@ from __future__ import annotations import logging +import subprocess +import sys from pathlib import Path import black @@ -72,7 +74,9 @@ def main( is_32bit="32" in floating, ) source = black.format_str(source, mode=black.mode.Mode()) - (dest / name).write_text(source, "utf-8") + dest_file: Path = dest / name + dest_file.write_text(source, "utf-8") + subprocess.run([sys.executable, "-m", "ruff", dest_file.as_posix(), "--fix"]) raise SystemExit(0) diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index c331a29..650c8ab 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -75,9 +75,25 @@ _REAL = np.cos(0.01 * np.pi) _IMAG = 1j * np.sin(0.01 * np.pi) _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) +{% if not disable_jit %} -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def product( +{% macro jit_nopython() -%} +@jit(nopython=True, nogil=True, cache=True) +{%- endmacro %} + +{% macro jit_forceobj() -%} +@jit(nopython=False, forceobj=True, cache=True, looplift=False) +{%- endmacro %} + +{% else %} + +{% macro jit_nopython() -%}{%- endmacro %} +{% macro jit_forceobj() -%}{%- endmacro %} + +{% endif %} + +{{ jit_nopython() }} +def product( matrix1: npt.NDArray[{{complex}}], matrix2: npt.NDArray[{{complex}}] ) -> {{floating}}: """Calculate scalar product of two matrices.""" @@ -90,8 +106,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: """Generate a random vector with Haar measure.""" real = np.random.uniform(0, 1, depth) # noqa: NPY002 @@ -109,8 +125,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Generate multiple random vectors with Haar measure in form of matrix.""" real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 @@ -127,9 +143,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] - -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: """Normalize a vector.""" {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} @@ -145,8 +160,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: """Build a projection from a vector.""" {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} @@ -156,8 +171,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(forceobj=True, cache=True) -{% endif %}def kronecker( +{{ jit_forceobj() }} +def kronecker( mtx: npt.NDArray[{{complex}}], mtx1: npt.NDArray[{{complex}}] ) -> npt.NDArray[{{complex}}]: """Kronecker Product.""" @@ -181,8 +196,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def rotate( +{{ jit_nopython() }} +def rotate( rho2: npt.NDArray[{{complex}}], unitary: npt.NDArray[{{complex}}] ) -> npt.NDArray[{{complex}}]: """Sandwich an operator with a unitary.""" @@ -203,13 +218,13 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 -{% if not disable_jit %}@jit(forceobj=True) -{% endif %}def optimize_d_fs( +{{ jit_forceobj() }} +def optimize_d_fs( new_state: npt.NDArray[{{complex}}], visibility_state: npt.NDArray[{{complex}}], depth: int, quantity: int, - epochs: int, + updates_count: int, ) -> npt.NDArray[{{complex}}]: """Optimize implementation for FSnQd mode.""" @@ -224,7 +239,7 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) rotated_2 = rotate(new_state, unitary) - for idx in range(epochs): + for idx in range(updates_count): idx_mod = idx % int(quantity) unitary = random_unitary_d_fs(depth, quantity, idx_mod) {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} @@ -249,8 +264,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return rotated_2.astype({{complex}}, copy=False) # type: ignore[no-any-return] -{% if not disable_jit %}@jit(forceobj=True, cache=True) -{% endif %}def random_unitary_d_fs( +{{ jit_forceobj() }} +def random_unitary_d_fs( depth: int, quantity: int, idx: int ) -> npt.NDArray[{{complex}}]: """N quDits.""" @@ -263,8 +278,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return mtx # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def _random_unitary_d_fs(depth: int) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def _random_unitary_d_fs(depth: int) -> npt.NDArray[{{complex}}]: random_mtx = random_d_fs(depth, 1) {% if debug_dtype_checks %}assert_dtype(random_mtx, {{complex}}){% endif %} @@ -279,8 +294,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return value # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Random n quDit state.""" rand_vectors = get_random_haar_2d(depth, quantity) vector = normalize(rand_vectors[0]) @@ -300,8 +315,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) -{% if not disable_jit %}@jit(forceobj=True, cache=True) -{% endif %}def expand_d_fs( +{{ jit_forceobj() }} +def expand_d_fs( value: npt.NDArray[{{complex}}], depth: int, quantity: int, @@ -334,15 +349,13 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) # ██████ ███████ ██ ██ ██████ ██████ ███████ -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def random_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: +{{ jit_nopython() }} +def random_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Draw random biseparable state.""" random_vector_1 = normalize(get_random_haar_1d(depth)) random_vector_2 = normalize(get_random_haar_1d(quantity)) - print(random_vector_1.shape) - print(random_vector_2.shape) - vector = np.outer(random_vector_1, random_vector_2) + vector = np.outer(random_vector_1, random_vector_2).flatten() {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} vector = project(vector) @@ -369,8 +382,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) {%- endmacro %} -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: +{{ jit_forceobj() }} +def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Draw random unitary for biseparable state.""" {{_random_unitary_bs()}} @@ -381,8 +394,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(nopython=True, nogil=True, cache=True) -{% endif %}def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: +{{ jit_forceobj() }} +def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Draw random unitary for biseparable state.""" {{_random_unitary_bs()}} @@ -393,8 +406,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) return retval # type: ignore[no-any-return] -{% if not disable_jit %}@jit(forceobj=True) -{% endif %}def optimize_bs( +{{ jit_forceobj() }} +def optimize_bs( new_state: npt.NDArray[{{complex}}], visibility_state: npt.NDArray[{{complex}}], depth: int, @@ -421,6 +434,8 @@ _VALUE = (_REAL + _IMAG - 1).astype({{complex}}) npt.NDArray[{{complex}}] Optimized state. """ + {% if debug_dtype_checks %}assert_dtype(new_state, {{complex}}){% endif %} + {% if debug_dtype_checks %}assert_dtype(visibility_state, {{complex}}){% endif %} pp1 = product(new_state, visibility_state) From 0186038afa8b19dc268b902aba2b79caac7e9ffb Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 00:02:31 +0100 Subject: [PATCH 074/227] Generate fixed numpy backend files --- cssfinder/algorithm/backend/numpy/_impl/_complex128.py | 5 ++++- cssfinder/algorithm/backend/numpy/_impl/_complex64.py | 5 ++++- scripts/templates/numpy.pyjinja2 | 5 ++++- 3 files changed, 12 insertions(+), 3 deletions(-) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 28c460f..53e512f 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -350,8 +350,11 @@ def optimize_bs( unitary = unitary.conj().T return_state = rotate(new_state, unitary) - while (pp2 := product(return_state, visibility_state)) > pp1: + pp2 = product(return_state, visibility_state) + + while pp2 > pp1: pp1 = pp2 return_state = rotate(return_state, unitary) + pp2 = product(return_state, visibility_state) return return_state diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 9d587c7..6511379 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -354,8 +354,11 @@ def optimize_bs( unitary = unitary.conj().T return_state = rotate(new_state, unitary) - while (pp2 := product(return_state, visibility_state)) > pp1: + pp2 = product(return_state, visibility_state) + + while pp2 > pp1: pp1 = pp2 return_state = rotate(return_state, unitary) + pp2 = product(return_state, visibility_state) return return_state diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index 650c8ab..04e8b71 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -456,9 +456,12 @@ def optimize_bs( return_state = rotate(new_state, unitary) {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - while (pp2 := product(return_state, visibility_state)) > pp1: + pp2 = product(return_state, visibility_state) + + while pp2 > pp1: pp1 = pp2 return_state = rotate(return_state, unitary) + pp2 = product(return_state, visibility_state) {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} From be17328da3b8f5fb4c3ac9db4bf6f3546f730077 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 00:07:10 +0100 Subject: [PATCH 075/227] Refactor system tests to avoid code duplication --- test/{system => test_system}/__init__.py | 0 .../test_fsnqd.py => test_system/base.py} | 61 ++++++++++++------- test/test_system/test_fsnqd.py | 40 ++++++++++++ test/test_system/test_sbipi.py | 40 ++++++++++++ 4 files changed, 119 insertions(+), 22 deletions(-) rename test/{system => test_system}/__init__.py (100%) rename test/{system/test_fsnqd.py => test_system/base.py} (67%) create mode 100644 test/test_system/test_fsnqd.py create mode 100644 test/test_system/test_sbipi.py diff --git a/test/system/__init__.py b/test/test_system/__init__.py similarity index 100% rename from test/system/__init__.py rename to test/test_system/__init__.py diff --git a/test/system/test_fsnqd.py b/test/test_system/base.py similarity index 67% rename from test/system/test_fsnqd.py rename to test/test_system/base.py index b85a250..ae60411 100644 --- a/test/system/test_fsnqd.py +++ b/test/test_system/base.py @@ -22,7 +22,7 @@ from __future__ import annotations -from pathlib import Path +from dataclasses import dataclass from typing import TYPE_CHECKING import numpy as np @@ -31,19 +31,34 @@ from cssfinder.io.output_loader import GilbertOutputLoader if TYPE_CHECKING: + from pathlib import Path + import numpy.typing as npt import pandas as pd -PROJECT_5QUBITS = Path.cwd() / "examples" / "5qubits" +class ModeTest: + """Base class for simple mode test suite.""" + + @dataclass + class MinMax: + """Well named container for max and min values of floating range.""" + + min: float # noqa: A003 # not needed in this scope + """Minimal value of range.""" -class TestFSnQd5qubits: - """Test behavior of FSnQd mode of Gilbert algorithm.""" + max: float # noqa: A003 # not needed in this scope + """Maximal value of range.""" - EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int + PROJECT_PATH: Path + TEST_TASK_NAME: str - output: Path - """Path to output directory.""" + OUT_STATE_ROW_COUNT: int + OUT_STATE_COL_COUNT: int + + MIN_CORRECTION_VALUE: float + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax corrections: pd.DataFrame """List of corrections obtained from cssfinder.""" @@ -58,13 +73,19 @@ def setup_class(cls) -> None: Executed once for class, shared between tests within class. """ - run_project_from(PROJECT_5QUBITS, ["test_fsnqd_5qubits"]) - cls.output = PROJECT_5QUBITS / "output" / "test_fsnqd_5qubits" + run_project_from(cls.PROJECT_PATH, [cls.TEST_TASK_NAME]) cls.corrections = GilbertOutputLoader().load_corrections_from( - cls.output / "corrections.json" + cls.get_output_directory() / "corrections.json" + ) + cls.state = GilbertOutputLoader().load_state_from( + cls.get_output_directory() / "state.mtx" ) - cls.state = GilbertOutputLoader().load_state_from(cls.output / "state.mtx") + + @classmethod + def get_output_directory(cls) -> Path: + """Path to output directory.""" + return cls.PROJECT_PATH / "output" / cls.TEST_TASK_NAME def test_number_of_corrections(self) -> None: """Check if valid number of corrections was saved.""" @@ -74,26 +95,22 @@ def test_first_correction(self) -> None: """Check if first correction value is within expected range.""" value = self.corrections["value"].iloc[0] - min_value = 0.118 - max_value = 0.120 - - assert min_value < value < max_value + assert ( + self.MIN_MAX_FIRST_CORRECTION_RANGE.min + < value + < self.MIN_MAX_FIRST_CORRECTION_RANGE.max + ) def test_last_better_than_first_correction(self) -> None: """Check if last correction is better (smaller) than first correction.""" values = self.corrections["value"] first, last = values.iloc[0], values.iloc[-1] - min_expected = 0.100 - - assert first > last > min_expected + assert first > last > self.MIN_CORRECTION_VALUE def test_state_shape(self) -> None: """Check if output state has correct shape.""" - state_row_count = 32 - state_column_count = 32 - - assert self.state.shape == (state_row_count, state_column_count) + assert self.state.shape == (self.OUT_STATE_ROW_COUNT, self.OUT_STATE_COL_COUNT) def test_state_dtype(self) -> None: """Check if output state has correct data type.""" diff --git a/test/test_system/test_fsnqd.py b/test/test_system/test_fsnqd.py new file mode 100644 index 0000000..7740493 --- /dev/null +++ b/test/test_system/test_fsnqd.py @@ -0,0 +1,40 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Module groups system level test of FSnQd mode of Gilbert algorithm.""" + +from __future__ import annotations + +from pathlib import Path +from test.test_system.base import ModeTest + + +class Test_FSnQd(ModeTest): # noqa: N801 # Underscore used for readability. + """Test behavior of FSnQd mode of Gilbert algorithm.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + PROJECT_PATH = Path.cwd() / "examples" / "5qubits" + TEST_TASK_NAME: str = "test_fsnqd_5qubits" + + OUT_STATE_ROW_COUNT: int = 32 + OUT_STATE_COL_COUNT: int = 32 + + MIN_CORRECTION_VALUE: float = 0.100 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.118, 0.120) diff --git a/test/test_system/test_sbipi.py b/test/test_system/test_sbipi.py new file mode 100644 index 0000000..755196e --- /dev/null +++ b/test/test_system/test_sbipi.py @@ -0,0 +1,40 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Module groups system level test of FSnQd mode of Gilbert algorithm.""" + +from __future__ import annotations + +from pathlib import Path +from test.test_system.base import ModeTest + + +class Test_SBiPi(ModeTest): # noqa: N801 # Underscore used for readability. + """Test behavior of SBiPi mode of Gilbert algorithm.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + PROJECT_PATH = Path.cwd() / "examples" / "proj" + TEST_TASK_NAME: str = "test_sbipi_proj" + + OUT_STATE_ROW_COUNT: int = 9 + OUT_STATE_COL_COUNT: int = 9 + + MIN_CORRECTION_VALUE: float = 0.070 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.108, 0.110) From c143ca07635a398c7c17d096c04771b11fda7d8d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 10 Mar 2023 00:21:36 +0100 Subject: [PATCH 076/227] Update test-system poe task in pyproject.toml --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index af45d60..bc29075 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,7 +60,7 @@ build = [ gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } test-system = [ { cmd = "poetry install --sync --no-ansi" }, - { cmd = "pytest test/system -v --cov" } + { cmd = "pytest test/test_system -v --cov" } ] type-check = [ { cmd = "poetry install --sync --no-ansi" }, From db46b84bc62a5adbb69ba832de6d00e8d15b8a80 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 00:25:07 +0100 Subject: [PATCH 077/227] Fix test VSC config and CI config --- .github/workflows/system_tests.yaml | 3 ++- .vscode/settings.json | 4 ++-- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index c911f61..e4d2cab 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -15,6 +15,7 @@ on: - cssfinder/** - test/** - poetry.lock + - pyproject.toml - .github/workflows/system_tests.yaml pull_request: @@ -69,5 +70,5 @@ jobs: # This step generates numpy backend with all debug options enabled. run: poetry run poe gen-numpy-impl --disable-jit --debug-dtype-checks - - name: Run static type checker + - name: Run system tests run: poetry run poe test-system diff --git a/.vscode/settings.json b/.vscode/settings.json index 60ca70d..c8c1421 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -21,8 +21,8 @@ "editor.rulers": [88, 100], "editor.renderWhitespace": "selection", "python.testing.pytestArgs": [ - "tests", - "source", + "test", + "cssfinder", "--log-level=DEBUG", "-s" ], From 91188a8dbebe832d338cf24ec5ca1a6f2c391e5f Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 00:58:58 +0100 Subject: [PATCH 078/227] Add release creator script --- scripts/release.py | 83 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 83 insertions(+) create mode 100644 scripts/release.py diff --git a/scripts/release.py b/scripts/release.py new file mode 100644 index 0000000..84738ac --- /dev/null +++ b/scripts/release.py @@ -0,0 +1,83 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Create release branch and bump version of package.""" + + +from __future__ import annotations + +import re +import subprocess +from pathlib import Path + +import click + +SCRIPTS_DIR = Path(__file__).parent +ROOT_DIR = SCRIPTS_DIR.parent + +PYPROJECT_PATH = ROOT_DIR / "pyproject.toml" +INIT_PATH = ROOT_DIR / "cssfinder" / "__init__.py" +README_PATH = ROOT_DIR / "README.md" + + +@click.command() +@click.argument("version", type=str) +def main(version: str) -> None: + """Create release branch and change version of package.""" + replace_version( + PYPROJECT_PATH, + r"version\s*=\s*\"(.*?)\"\n", + f'version = "{version}"\n', + ) + replace_version( + INIT_PATH, + r"__version__\s*=\s*\"(.*?)\"\n", + f'__version__ = "{version}"\n', + ) + replace_version( + README_PATH, + r"cssfinder-(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?", + f"cssfinder-{version}", + count=0, + ) + + subprocess.run(["git", "switch", "-c", f"release/{version}"]) + subprocess.run(["poetry", "run", "poe", "run-hooks"]) + subprocess.run( + [ + "git", + "add", + PYPROJECT_PATH.relative_to(ROOT_DIR).as_posix(), + INIT_PATH.relative_to(ROOT_DIR).as_posix(), + README_PATH.relative_to(ROOT_DIR).as_posix(), + ] + ) + subprocess.run(["git", "commit", "-m", f"Bump version to {version}"]) + + +def replace_version(src: Path, regex: str, replacement: str, count: int = 1) -> None: + """Read file content, replace version found with and write file.""" + pyproject = src.read_text("utf-8") + pyproject = re.compile(regex).sub(replacement, pyproject, count) + src.write_text(pyproject, "utf-8") + + +if __name__ == "__main__": + main() From e019b17a36eac23c273686e25a05e49083d7efde Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:02:10 +0100 Subject: [PATCH 079/227] Widen accepted value range for test_first_correction in SBiPi mode --- test/test_system/base.py | 4 ++++ test/test_system/test_sbipi.py | 2 +- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/test/test_system/base.py b/test/test_system/base.py index ae60411..8076ae5 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -99,6 +99,10 @@ def test_first_correction(self) -> None: self.MIN_MAX_FIRST_CORRECTION_RANGE.min < value < self.MIN_MAX_FIRST_CORRECTION_RANGE.max + ), ( + self.MIN_MAX_FIRST_CORRECTION_RANGE.min, + value, + self.MIN_MAX_FIRST_CORRECTION_RANGE.max, ) def test_last_better_than_first_correction(self) -> None: diff --git a/test/test_system/test_sbipi.py b/test/test_system/test_sbipi.py index 755196e..0cea119 100644 --- a/test/test_system/test_sbipi.py +++ b/test/test_system/test_sbipi.py @@ -37,4 +37,4 @@ class Test_SBiPi(ModeTest): # noqa: N801 # Underscore used for readability. OUT_STATE_COL_COUNT: int = 9 MIN_CORRECTION_VALUE: float = 0.070 - MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.108, 0.110) + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.115) From 630dd68b6d5beee3b9375a8f4adab726f84fb81f Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:24:54 +0100 Subject: [PATCH 080/227] Improve release creator script --- pyproject.toml | 3 ++- scripts/release.py | 28 +++++++++++++++------------- 2 files changed, 17 insertions(+), 14 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c51c18d..bc3756e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.1.0" +version = "0.2.0" description = "" authors = [ "Krzysztof Wiśniewski ", @@ -45,6 +45,7 @@ cssfinder = "cssfinder.cli:main" cssf = "cssfinder.cli:main" [tool.poe.tasks] +release = { script = "scripts.release:main" } install-hooks = [ { cmd = "poetry install --sync --no-ansi" }, { cmd = "poetry run pre-commit install --install-hooks --overwrite" } diff --git a/scripts/release.py b/scripts/release.py index 84738ac..b7b5a8d 100644 --- a/scripts/release.py +++ b/scripts/release.py @@ -37,10 +37,19 @@ README_PATH = ROOT_DIR / "README.md" -@click.command() +@click.group() +def main() -> None: + """Release manager for releases.""" + + +@main.command() @click.argument("version", type=str) -def main(version: str) -> None: +def create(version: str) -> None: """Create release branch and change version of package.""" + subprocess.run(["git", "add", "-A"]) + subprocess.run(["git", "stash"]) + subprocess.run(["git", "switch", "dev"]) + subprocess.run(["git", "switch", "-c", f"release/{version}"]) replace_version( PYPROJECT_PATH, r"version\s*=\s*\"(.*?)\"\n", @@ -57,19 +66,12 @@ def main(version: str) -> None: f"cssfinder-{version}", count=0, ) - - subprocess.run(["git", "switch", "-c", f"release/{version}"]) + subprocess.run(["git", "add", "-A"]) subprocess.run(["poetry", "run", "poe", "run-hooks"]) - subprocess.run( - [ - "git", - "add", - PYPROJECT_PATH.relative_to(ROOT_DIR).as_posix(), - INIT_PATH.relative_to(ROOT_DIR).as_posix(), - README_PATH.relative_to(ROOT_DIR).as_posix(), - ] - ) + subprocess.run(["git", "add", "-A"]) subprocess.run(["git", "commit", "-m", f"Bump version to {version}"]) + subprocess.run(["git", "push", "--set-upstream", "origin", f"release/{version}"]) + subprocess.run(["git", "stash", "pop"]) def replace_version(src: Path, regex: str, replacement: str, count: int = 1) -> None: From 5314f5deffc1d03b1071f6c17233387e1f3916b3 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:25:50 +0100 Subject: [PATCH 081/227] Bump version to 0.2.0 --- README.md | 11 +++++------ cssfinder/__init__.py | 2 +- 2 files changed, 6 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 20ed7c6..3091023 100644 --- a/README.md +++ b/README.md @@ -71,28 +71,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.1.0-py3-none-any.whl` or -alike inside. +This will create `dist/` directory with `cssfinder-0.2.0` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.1.0-py3-none-any.whl +pip install ./dist/cssfinder-0.2.0 ``` What you expect is ``` -Successfully installed cssfinder-0.1.0 +Successfully installed cssfinder-0.2.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.1.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.2.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.1.0` should be included in this list. +But `cssfinder-0.2.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 030d37f..16feb85 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.1.0" +__version__ = "0.2.0" From 4d6fa7ad12e099fa08ba24e955f1082f317af4c3 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:33:42 +0100 Subject: [PATCH 082/227] Update CHANGELOG.md --- CHANGELOG.md | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9dc219c..2b9c9f7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,12 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. -### 0.1.0 [in progress] +### 0.2.0 - Mar 10, 2023 + +- Fix SBiPi mode when given fixed system size. System size detection is still + not working. + +### 0.1.0 - Mar 8, 2023 - Add project based execution using `cssfproject.json` file. From 2986a02063df1d0950c469f66300a890ee3b06bb Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:40:32 +0100 Subject: [PATCH 083/227] Add stash only when dirty workspace --- scripts/release.py | 23 +++++++++++++++++++---- 1 file changed, 19 insertions(+), 4 deletions(-) diff --git a/scripts/release.py b/scripts/release.py index b7b5a8d..08be7d6 100644 --- a/scripts/release.py +++ b/scripts/release.py @@ -46,9 +46,22 @@ def main() -> None: @click.argument("version", type=str) def create(version: str) -> None: """Create release branch and change version of package.""" - subprocess.run(["git", "add", "-A"]) - subprocess.run(["git", "stash"]) - subprocess.run(["git", "switch", "dev"]) + retval = subprocess.run(["git", "branch", "--show-current"], capture_output=True) + print(retval.stdout.decode("utf-8")) + is_dev = retval.stdout.decode("utf-8").startswith("dev") + + retval = subprocess.run(["git", "status"], capture_output=True) + print(retval.stdout.decode("utf-8")) + is_dirty = "Changes not staged for commit" in retval.stdout.decode("utf-8") + + if is_dirty: + subprocess.run(["git", "add", "-A"]) + subprocess.run(["git", "stash"]) + + if not is_dev: + subprocess.run(["git", "switch", "dev"]) + + subprocess.run(["git", "pull"]) subprocess.run(["git", "switch", "-c", f"release/{version}"]) replace_version( PYPROJECT_PATH, @@ -71,7 +84,9 @@ def create(version: str) -> None: subprocess.run(["git", "add", "-A"]) subprocess.run(["git", "commit", "-m", f"Bump version to {version}"]) subprocess.run(["git", "push", "--set-upstream", "origin", f"release/{version}"]) - subprocess.run(["git", "stash", "pop"]) + + if is_dirty: + subprocess.run(["git", "stash", "pop"]) def replace_version(src: Path, regex: str, replacement: str, count: int = 1) -> None: From 9ec3e8a0ddb1dda251fd1d9a12cec8f2d446029a Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:41:52 +0100 Subject: [PATCH 084/227] Remove unused release-drafter.yaml --- .github/release-drafter.yaml | 34 ---------------------------------- 1 file changed, 34 deletions(-) delete mode 100644 .github/release-drafter.yaml diff --git a/.github/release-drafter.yaml b/.github/release-drafter.yaml deleted file mode 100644 index c85211e..0000000 --- a/.github/release-drafter.yaml +++ /dev/null @@ -1,34 +0,0 @@ ---- -template: | - ## Changes - $CHANGES -categories: - - title: ":boom: Breaking Changes" - label: "breaking" - - title: ":rocket: Features" - label: "enhancement" - - title: ":fire: Removals and Deprecations" - label: "removal" - - title: ":beetle: Fixes" - label: "bug" - - title: ":raising_hand: Help wanted" - label: "help wanted" - - title: ":racehorse: Performance" - label: "performance" - - title: ":rotating_light: Testing" - label: "testing" - - title: ":construction_worker: Continuous Integration" - label: "ci" - - title: ":books: Documentation" - label: "documentation" - - title: ":hammer: Refactoring" - label: "refactoring" - - title: ":lipstick: Style" - label: "style" - - title: ":package: Dependencies" - labels: - - "dependencies" - - "build" - -exclude-labels: - - "skip-changelog" From 6294f304191d90050814691ce2da90401fd7e8ac Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:51:04 +0100 Subject: [PATCH 085/227] Always run system tests --- .github/workflows/system_tests.yaml | 6 ------ 1 file changed, 6 deletions(-) diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index e4d2cab..c4126b4 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -11,12 +11,6 @@ on: - feature/** - release/** - dependabot/** - paths: - - cssfinder/** - - test/** - - poetry.lock - - pyproject.toml - - .github/workflows/system_tests.yaml pull_request: branches: From 4d00bfa2b90a9601310a8178447ef4c6b7bb944d Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 01:52:31 +0100 Subject: [PATCH 086/227] Widen accepted correction ranges for tests --- test/test_system/test_fsnqd.py | 2 +- test/test_system/test_sbipi.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/test/test_system/test_fsnqd.py b/test/test_system/test_fsnqd.py index 7740493..21bfa4d 100644 --- a/test/test_system/test_fsnqd.py +++ b/test/test_system/test_fsnqd.py @@ -37,4 +37,4 @@ class Test_FSnQd(ModeTest): # noqa: N801 # Underscore used for readability. OUT_STATE_COL_COUNT: int = 32 MIN_CORRECTION_VALUE: float = 0.100 - MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.118, 0.120) + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.100, 0.130) diff --git a/test/test_system/test_sbipi.py b/test/test_system/test_sbipi.py index 0cea119..bcf67e4 100644 --- a/test/test_system/test_sbipi.py +++ b/test/test_system/test_sbipi.py @@ -37,4 +37,4 @@ class Test_SBiPi(ModeTest): # noqa: N801 # Underscore used for readability. 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"jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "f6bcd7948720d50651e6f4daf09ec0d4d3d703569fdfa137c6a3b5bbf7c0895c" +content-hash = "f213a991fcf289e01a05dce8be50855f5a6d9b2287fa252a42b4272e1a5f0949" diff --git a/pyproject.toml b/pyproject.toml index bc3756e..49498db 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,7 @@ matplotlib = "^3.7.0" pandas = "^1.5.3" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies -black = "^22.12.0" +black = ">=22.12,<24.0" isort = "^5.11.4" docformatter = { extras = ["tomli"], version = "^1.5.1" } pytest = "^7.2.0" From 49762968472b1a0cc50fb4c08bc203dcc59e520d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 10 Mar 2023 11:43:16 +0100 Subject: [PATCH 088/227] Fix bug in task-report command caused by incorrect argument usage (#9) --- cssfinder/cli.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 48eabdc..45e2016 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -138,14 +138,15 @@ def _run(ctx: Ctx, tasks: list[str] | None) -> None: "task", ) @click.pass_obj -def _task_report(path: str, task: str) -> None: +def _task_report(ctx: Ctx, task: str) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. """ + assert ctx.project_path is not None try: - create_report_from(path, task) + create_report_from(ctx.project_path, task) except AmbiguousTaskKeyError as exc: logging.critical(exc.args[0]) From 8660a3e880292719e7a7bcaf36f8b53837bcf6fb Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 11:45:35 +0100 Subject: [PATCH 089/227] Bump version to 0.2.1 --- README.md | 10 +++++----- cssfinder/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 3091023..9672693 100644 --- a/README.md +++ b/README.md @@ -71,27 +71,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.2.0` or alike inside. +This will create `dist/` directory with `cssfinder-0.2.1` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.2.0 +pip install ./dist/cssfinder-0.2.1 ``` What you expect is ``` -Successfully installed cssfinder-0.2.0 +Successfully installed cssfinder-0.2.1 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.2.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.2.1 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.2.0` should be included in this list. +But `cssfinder-0.2.1` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 16feb85..d13f818 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.2.0" +__version__ = "0.2.1" diff --git a/pyproject.toml b/pyproject.toml index bc3756e..1f2f4bc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.2.0" +version = "0.2.1" description = "" authors = [ "Krzysztof Wiśniewski ", From 2d504de11ec3250c65237c20a5851d51ffe94490 Mon Sep 17 00:00:00 2001 From: argmaster Date: Fri, 10 Mar 2023 23:57:01 +0100 Subject: [PATCH 090/227] Add HTML and PDF reports --- cssfinder/api.py | 38 +- cssfinder/cssfproject.py | 9 + cssfinder/report.py | 531 ++++++++++++++++++------- cssfinder/templates/report.html.jinja2 | 167 ++++++++ poetry.lock | 324 ++++++++++++++- pyproject.toml | 1 + 6 files changed, 911 insertions(+), 159 deletions(-) create mode 100644 cssfinder/templates/report.html.jinja2 diff --git a/cssfinder/api.py b/cssfinder/api.py index 5621e2b..4d997d6 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -30,11 +30,7 @@ from cssfinder.hooks import save_corrections_hook, save_matrix_hook from cssfinder.io.asset_loader import GilbertAssetLoader from cssfinder.io.output_loader import GilbertOutputLoader -from cssfinder.report import ( - create_corrections_plot, - create_iteration_linear_plot, - display_short_report, -) +from cssfinder.report import HTMLReport, Plotter, display_short_report if TYPE_CHECKING: from pathlib import Path @@ -141,15 +137,31 @@ def create_report(project: CSSFProject, task: str) -> None: corrections = GilbertOutputLoader().load_corrections(task_object) - axes = create_corrections_plot(corrections) - axes.figure.set_figwidth(10) - axes.figure.set_figheight(10) - axes.figure.savefig((task_object.output / "decay.png").as_posix(), dpi=300) + plotter = Plotter(corrections) - axes = create_iteration_linear_plot(corrections) - axes.figure.set_figwidth(10) - axes.figure.set_figheight(10) - axes.figure.savefig((task_object.output / "iterations.png").as_posix(), dpi=300) + decay = plotter.plot_corrections().configure() + decay.save_plot(task_object.output / "decay.png") + + inverse_decay = plotter.plot_corrections_inverse().configure() + inverse_decay.save_plot(task_object.output / "inverse_decay.png") + + iterations = plotter.plot_iteration().configure() + iterations.save_plot(task_object.output / "iterations.png") + + plotter.slope_props.save_to(task_object.output / "slope_props.json") + + o = HTMLReport( + plotter.slope_props, + [ + plotter.plot_corrections().configure(), + plotter.plot_corrections_inverse().configure(), + plotter.plot_iteration().configure(), + ], + task_object, + ).render() + + o.save_to(task_object.output / "report.html") + o.save_pdf(task_object.output / "report.pdf") display_short_report(corrections.to_numpy()) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 7684d41..efae461 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -274,6 +274,9 @@ class Task(CommonBaseModel): _task_name: str = Field(default="") """Name of task assigned to it in project.""" + _project: CSSFProject = Field(default="") + """Reference to project object.""" + @property def output(self) -> Path: """Path to output directory of task.""" @@ -284,12 +287,18 @@ def name(self) -> str: """Name of this task in project.""" return self._task_name + @property + def project(self) -> CSSFProject: + """Get project owning this task.""" + return self._project + def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: """Evaluate dynamic path expressions.""" if self.gilbert is not None: self.gilbert.eval_dynamic(project, task_name, task) self._output = project.output / task_name self._task_name = task_name + self._project = project class GilbertCfg(CommonBaseModel): diff --git a/cssfinder/report.py b/cssfinder/report.py index a4162a0..68dc0c7 100644 --- a/cssfinder/report.py +++ b/cssfinder/report.py @@ -22,12 +22,20 @@ from __future__ import annotations +import base64 +import json import sys -from dataclasses import dataclass +from collections import OrderedDict +from dataclasses import asdict, dataclass from functools import lru_cache -from typing import TYPE_CHECKING +from io import BytesIO +from pathlib import Path +from typing import TYPE_CHECKING, Optional +import jinja2 import numpy as np +import weasyprint +from matplotlib import figure as fig from matplotlib import pyplot as plt if TYPE_CHECKING: @@ -35,86 +43,409 @@ import pandas as pd from typing_extensions import Self + from cssfinder.cssfproject import Task -def create_corrections_plot(corrections: pd.DataFrame) -> plt.Axes: - """Create a plot of distance decay corrections. - Parameters - ---------- - corrections : pandas.DataFrame - A DataFrame containing the distance decay corrections. The DataFrame - should have an "index" column and a "value" column. +class HTMLReport: + """HTML based report generator.""" - Returns - ------- - matplotlib.axes.Axes - The axes object for the created plot. + def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> None: + self.ctx = _HTMLReportCtx(props, plots, task) + self.env = jinja2.Environment( + loader=jinja2.PackageLoader("cssfinder"), + autoescape=jinja2.select_autoescape(), + ) - Notes - ----- - The function creates a line plot of the distance decay corrections, - with the "index" column on the x-axis and the "value" column on the - y-axis. The plot includes a grid and axis labels, and a title indicating - that it shows distance decay. + def render(self) -> RenderedReport: + """Render report. - The function returns the axes object for the created plot, which can be - further customized or saved using the methods of the matplotlib API. + Returns + ------- + RenderedReport + Report handle providing interface for saving report. + + """ + template = self.env.get_template("report.html.jinja2") + + return RenderedReport(template.render(ctx=self.ctx)) - """ - plt.figure() - axes = plt.subplot() - axes.plot(corrections[["index"]], corrections[["value"]]) - axes.grid(visible=True) +@dataclass +class _HTMLReportCtx: + props: SlopeProperties + plots: list[Plot] + task: Task + + @property + def title(self) -> str: + return f"Report {self.task.output.parent.parent.name} / {self.task.name}" + + @property + def meta(self) -> OrderedDict: + """Return project metadata.""" + return OrderedDict( + { + "Project name": self.task.project.meta.name, + "Task name": self.task.name, + "Author": self.task.project.meta.author, + "Email": self.task.project.meta.email, + "Description": self.task.project.meta.description, + "Version": self.task.project.meta.version, + } + ) - axes.set_xlabel("Correction index") - axes.set_ylabel("Correction value") + @property + def math_props(self) -> OrderedDict: + """Return mathematical properties.""" + return OrderedDict( + { + "Hilbert-Schmidt distance": f"{self.props.optimum:.3f}", + "Sample correlation coefficient": f"{self.props.r_value:.3f}", + } + ) - axes.set_title("Distance decay") - return axes +class RenderedReport: + """Container for rendered report.""" + def __init__(self, content: str) -> None: + self.content = content -def create_iteration_linear_plot(corrections: pd.DataFrame) -> plt.Axes: - """Create a plot of iteration linear corrections. + def save_to(self, dest: Path) -> None: + """Save report to a file. - Parameters + Parameters + ---------- + dest : Path + Path to destination file. + + """ + dest.write_text(self.content, "utf-8") + + def save_pdf(self, dest: Path) -> None: + """Save content as PDF. + + Parameters + ---------- + dest : Path + Path to destination file. + + """ + weasyprint.HTML(string=self.content).write_pdf(target=dest.as_posix()) + + +class Plotter: + """Plot creator class.""" + + def __init__(self, corrections: pd.DataFrame) -> None: + """Initialize plot creator. + + Parameters + ---------- + corrections : pandas.DataFrame + A DataFrame containing the distance decay corrections. The DataFrame + should have an "index" column and a "value" column. + + """ + self.corrections = corrections + self.slope_props = SlopeProperties.find(self.corrections.to_numpy()) + + def plot_corrections(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot of distance decay corrections. + + Parameters + ---------- + axes : Optional[plt.Axes], optional + Optional axes object to reuse, when none is given, new figure is created, + by default None + + Returns + ------- + Plot + Plot object containing plot axes. + + Notes + ----- + The function creates a line plot of the distance decay corrections, + with the "index" column on the x-axis and the "value" column on the + y-axis. The plot includes a grid and axis labels, and a title indicating + that it shows distance decay. + + The function returns the Plot object granting access to axes for the created + plot, which can be further customized or saved using the methods of the + matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.plot( + self.corrections[["index"]], self.corrections[["value"]], label="correction" + ) + axes.hlines( + [self.slope_props.optimum], + xmin=-10, + xmax=self.corrections[["index"]].max(), + color="red", + label="H-S distance", + ) + axes.grid(visible=True) + + axes.set_xlabel("Correction index") + axes.set_ylabel("Correction value") + + axes.set_title("Distance decay") + plt.legend(loc="upper right") + + return Plot(axes) + + def plot_corrections_inverse(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot offsets inverse of distance decay corrections. + + Parameters + ---------- + axes : Optional[plt.Axes], optional + Optional axes object to reuse, when none is given, new figure is created, + by default None + + Returns + ------- + Plot + Plot object containing plot axes. + + Notes + ----- + The function creates a line plot of the inverse of distance decay corrections, + with the "index" column on the x-axis and the "value" column inverse on the + y-axis. The plot includes a grid and axis labels, and a title indicating + that it shows distance decay. + + The function returns the Plot object granting access to axes for the created + plot, which can be further customized or saved using the methods of the + matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.plot( + self.corrections[["index"]], + 1 / (self.corrections[["value"]] - self.slope_props.optimum), + ) + axes.grid(visible=True) + + axes.set_xlabel("Correction index") + axes.set_ylabel("Correction offsetted inverse value") + + axes.set_title("Distance offsetted inverse decay") + + return Plot(axes) + + def plot_iteration(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot of iteration linear corrections. + + Returns + ------- + matplotlib.axes.Axes + The axes object for the created plot. + + Notes + ----- + The function creates a line plot of the iteration linear corrections, + with the "iteration" column on the x-axis and the correction values on + the y-axis. The correction values are calculated using the + `SlopeProperties` class, which takes the "index" column as input and + returns the corresponding correction values for each iteration. + + The plot includes a grid and axis labels, but no title. The function returns + the axes object for the created plot, which can be further customized or + saved using the methods of the matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.grid(visible=True) + + axes.set_xlabel("Iteration index") + axes.set_ylabel("Correction index") + + axes.set_title("Total number of correction") + + axes.plot( + self.corrections[["iteration"]], + self.corrections[["index"]], + ) + axes.plot( + self.corrections[["iteration"]], + self.corrections[["index"]], + ) + + return Plot(axes) + + +@dataclass +class Plot: + """Container class for plots generated with Plotter class.""" + + axes: plt.Axes + + @property + def figure(self) -> fig.Figure: + """Axes figure.""" + return self.axes.figure + + def configure(self, width: int = 8, height: int = 6) -> Self: + """Set the size of the current figure. + + Parameters + ---------- + width : int, optional + The width of the figure in inches. Default is 10. + height : int, optional + The height of the figure in inches. Default is 10. + + Returns + ------- + Self + Returns the instance of the object to allow for method chaining. + + """ + self.axes.figure.set_figwidth(width) + self.axes.figure.set_figheight(height) + return self + + def save_plot( + self, + dest: Path | BytesIO, + dpi: int = 300, + file_format: Optional[str] = None, + ) -> None: + """Save figure to file. + + Parameters + ---------- + dest : Path | BytesIO + Path to file or writable BytesIO. + dpi : int, optional + Plot output dpi, by default 150 + file_format : Optional[str], optional + File format, when None, deduced from file path, by default None + + """ + self.axes.figure.savefig( + dest.as_posix() if isinstance(dest, Path) else dest, + dpi=dpi, + format=file_format, + ) + + def base64_encode(self, file_format: Optional[str] = None) -> str: + """Encode plot as base64 string. + + Parameters + ---------- + file_format : Optional[str], optional + Preferred file format, by default None + + Returns + ------- + str + Encoded image. + + """ + io = BytesIO() + self.save_plot(io, file_format=file_format) + io.seek(0) + + return base64.b64encode(io.read()).decode("utf-8") + + +@dataclass +class SlopeProperties: + """Class that encapsulates slope properties and provides methods to calculate + correction values and find slope properties for a given dataset. + + Attributes ---------- - corrections : pandas.DataFrame - A DataFrame containing the iteration linear corrections. The DataFrame - should have columns "iteration" and "index" containing the iteration - number and correction index, respectively. + optimum: np.float64 + The optimum value found during the slope property calculation. + r_value: np.float64 + The r-value calculated for the slope properties. + aa1: np.float64 + The slope of the trend line of the correction index with respect to iteration + index. + bb1: np.float64 + The exponential decay coefficient calculated for the slope properties. - Returns + Methods ------- - matplotlib.axes.Axes - The axes object for the created plot. + get_correction(x: npt.NDArray[np.float64]) -> np.float64: + Returns the correction values for a given input array `x`. + find(data: npt.NDArray[np.float64]) -> 'SlopeProperties': + Finds the slope properties for a given dataset `data`. - Notes - ----- - The function creates a line plot of the iteration linear corrections, - with the "iteration" column on the x-axis and the correction values on - the y-axis. The correction values are calculated using the - `SlopeProperties` class, which takes the "index" column as input and - returns the corresponding correction values for each iteration. + """ - The plot includes a grid and axis labels, but no title. The function returns - the axes object for the created plot, which can be further customized or - saved using the methods of the matplotlib API. + optimum: np.float64 + r_value: np.float64 + aa1: np.float64 + bb1: np.float64 - """ - plt.figure() - axes = plt.subplot() + def get_correction_count(self, x: np.float64) -> np.float64: + """Return the correction values for a given input array `x`. - axes.grid(visible=True) + Parameters + ---------- + x: npt.NDArray[np.float64] + Input array for which correction values will be calculated. - props = SlopeProperties.find(corrections.to_numpy()) - axes.plot( - corrections[["iteration"]], - props.get_correction(corrections[["index"]].to_numpy()), - ) + Returns + ------- + np.float64 + The correction values calculated for the input array `x`. - return axes + """ + return np.multiply( # type: ignore[no-any-return] + np.power(x, self.aa1), + self.bb1, + ) + + @classmethod + def find(cls, data: npt.NDArray[np.float64]) -> Self: + """Find the slope properties for a given dataset `data`. + + Parameters + ---------- + data: npt.NDArray[np.float64] + The dataset for which slope properties will be calculated. + + Returns + ------- + SlopeProperties + An instance of the SlopeProperties class representing the slope properties + of the input data. + + """ + iteration_index: npt.NDArray[np.float64] = data[:, 0] + correction_index: npt.NDArray[np.float64] = data[:, 1] + correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] + + optimum = find_correction_optimum(data[:, 2]) + + r_value = R(correction_value, optimum) + + aa1 = trend(iteration_index, correction_index) + bb1 = np.exp(offset(iteration_index, correction_index)) + + return cls(optimum, r_value, aa1, bb1) + + def save_to(self, dest: Path) -> None: + """Save properties to file.""" + with dest.open("w", encoding="utf-8") as file: + json.dump(asdict(self), file) def cov( @@ -306,83 +637,3 @@ def display_short_report(data: npt.NDArray[np.float64]) -> None: sys.stdout.write( f"The dependence between correction and trail is approximately: {expr}\n", ) - - -@dataclass -class SlopeProperties: - """Class that encapsulates slope properties and provides methods to calculate - correction values and find slope properties for a given dataset. - - Attributes - ---------- - optimum: np.float64 - The optimum value found during the slope property calculation. - r_value: np.float64 - The r-value calculated for the slope properties. - aa1: np.float64 - The slope of the trend line of the correction index with respect to iteration - index. - bb1: np.float64 - The exponential decay coefficient calculated for the slope properties. - - Methods - ------- - get_correction(x: npt.NDArray[np.float64]) -> np.float64: - Returns the correction values for a given input array `x`. - find(data: npt.NDArray[np.float64]) -> 'SlopeProperties': - Finds the slope properties for a given dataset `data`. - - """ - - optimum: np.float64 - r_value: np.float64 - aa1: np.float64 - bb1: np.float64 - - def get_correction(self, x: np.float64) -> np.float64: - """Return the correction values for a given input array `x`. - - Parameters - ---------- - x: npt.NDArray[np.float64] - Input array for which correction values will be calculated. - - Returns - ------- - np.float64 - The correction values calculated for the input array `x`. - - """ - return np.multiply( # type: ignore[no-any-return] - np.power(x, self.aa1), - self.bb1, - ) - - @classmethod - def find(cls, data: npt.NDArray[np.float64]) -> Self: - """Find the slope properties for a given dataset `data`. - - Parameters - ---------- - data: npt.NDArray[np.float64] - The dataset for which slope properties will be calculated. - - Returns - ------- - SlopeProperties - An instance of the SlopeProperties class representing the slope properties - of the input data. - - """ - iteration_index: npt.NDArray[np.float64] = data[:, 0] - correction_index: npt.NDArray[np.float64] = data[:, 1] - correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] - - optimum = find_correction_optimum(data[:, 2]) - - r_value = R(correction_value, optimum) - - aa1 = trend(iteration_index, correction_index) - bb1 = np.exp(offset(iteration_index, correction_index)) - - return cls(optimum, r_value, aa1, bb1) diff --git a/cssfinder/templates/report.html.jinja2 b/cssfinder/templates/report.html.jinja2 new file mode 100644 index 0000000..ff50920 --- /dev/null +++ b/cssfinder/templates/report.html.jinja2 @@ -0,0 +1,167 @@ + + + + + + + + {{ ctx.title }} + + + + + + + + + + + +
+

CSSFinder Report

+
+ + {% for key, value in ctx.meta.items() %} + + + + + {% endfor %} +
+ {{ key }} + + {{ value }} +
+
+
+
+ + {% for key, value in ctx.math_props.items() %} + + + + + {% endfor %} +
+ {{ key }} + + {{ value }} +
+
+
+ {% for plot in ctx.plots %} +
+ Plot +
+ {% endfor %} +
+ + + diff --git a/poetry.lock b/poetry.lock index 1aae170..8bf6e46 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. 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cssfinder/reports/renderer.py | 121 +++++++ cssfinder/reports/txt.py | 23 ++ 12 files changed, 1060 insertions(+), 675 deletions(-) delete mode 100644 cssfinder/report.py create mode 100644 cssfinder/reports/__init__.py create mode 100644 cssfinder/reports/archive.py create mode 100644 cssfinder/reports/html.py create mode 100644 cssfinder/reports/manager.py create mode 100644 cssfinder/reports/math.py create mode 100644 cssfinder/reports/pdf.py create mode 100644 cssfinder/reports/plotting.py create mode 100644 cssfinder/reports/renderer.py create mode 100644 cssfinder/reports/txt.py diff --git a/cssfinder/api.py b/cssfinder/api.py index 4d997d6..6b3f872 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -29,12 +29,13 @@ from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task from cssfinder.hooks import save_corrections_hook, save_matrix_hook from cssfinder.io.asset_loader import GilbertAssetLoader -from cssfinder.io.output_loader import GilbertOutputLoader -from cssfinder.report import HTMLReport, Plotter, display_short_report +from cssfinder.reports.manager import ReportManager if TYPE_CHECKING: from pathlib import Path + from cssfinder.reports.renderer import ReportType + def run_project_from( project_file_path: Path | str, @@ -107,7 +108,9 @@ def run_gilbert( ) -def create_report_from(project_file_path: Path | str, task: str) -> None: +def create_report_from( + project_file_path: Path | str, task: str, reports: list[ReportType] +) -> None: """Load project (`cssfproject.json`) and create report for task selected by pattern. """ @@ -118,10 +121,10 @@ def create_report_from(project_file_path: Path | str, task: str) -> None: project.meta.author, project.meta.email, ) - create_report(project, task) + return create_report(project, task, reports) -def create_report(project: CSSFProject, task: str) -> None: +def create_report(project: CSSFProject, task: str, reports: list[ReportType]) -> None: """Create report for task selected by pattern from project object.""" tasks = project.select_tasks([task]) @@ -135,35 +138,12 @@ def create_report(project: CSSFProject, task: str) -> None: task_object, *_ = tasks - corrections = GilbertOutputLoader().load_corrections(task_object) - - plotter = Plotter(corrections) - - decay = plotter.plot_corrections().configure() - decay.save_plot(task_object.output / "decay.png") - - inverse_decay = plotter.plot_corrections_inverse().configure() - inverse_decay.save_plot(task_object.output / "inverse_decay.png") - - iterations = plotter.plot_iteration().configure() - iterations.save_plot(task_object.output / "iterations.png") - - plotter.slope_props.save_to(task_object.output / "slope_props.json") - - o = HTMLReport( - plotter.slope_props, - [ - plotter.plot_corrections().configure(), - plotter.plot_corrections_inverse().configure(), - plotter.plot_iteration().configure(), - ], - task_object, - ).render() - - o.save_to(task_object.output / "report.html") - o.save_pdf(task_object.output / "report.pdf") - - display_short_report(corrections.to_numpy()) + manager = ReportManager(project, task_object) + prepared_manager = manager.prepare() + for report_type in reports: + prepared_manager.request_report(report_type).save_to( + task_object.output / f"report.{report_type.name.lower()}" + ) class AmbiguousTaskKeyError(KeyError): diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 45e2016..83ec072 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -38,6 +38,7 @@ ProjectFileNotFoundError, ) from cssfinder.log import configure_logger +from cssfinder.reports.renderer import ReportType VERBOSITY_INFO: int = 2 @@ -137,16 +138,45 @@ def _run(ctx: Ctx, tasks: list[str] | None) -> None: @click.argument( "task", ) +@click.option( + "--html", + "--no-html", + is_flag=True, + default=False, + help="Include HTML report.", +) +@click.option( + "--pdf", + "--no-pdf", + is_flag=True, + default=False, + help="Include PDF report.", +) @click.pass_obj -def _task_report(ctx: Ctx, task: str) -> None: +def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. """ assert ctx.project_path is not None + + include_report_types = [] + + if html: + include_report_types.append(ReportType.HTML) + + if pdf: + include_report_types.append(ReportType.PDF) + + if len(include_report_types) == 0: + logging.critical( + "No report type was selected therefore nothing will be calculated, exiting." + ) + raise SystemExit(0) + try: - create_report_from(ctx.project_path, task) + create_report_from(ctx.project_path, task, include_report_types) except AmbiguousTaskKeyError as exc: logging.critical(exc.args[0]) diff --git a/cssfinder/report.py b/cssfinder/report.py deleted file mode 100644 index 68dc0c7..0000000 --- a/cssfinder/report.py +++ /dev/null @@ -1,639 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -"""Utilities for runtime report creation.""" - -from __future__ import annotations - -import base64 -import json -import sys -from collections import OrderedDict -from dataclasses import asdict, dataclass -from functools import lru_cache -from io import BytesIO -from pathlib import Path -from typing import TYPE_CHECKING, Optional - -import jinja2 -import numpy as np -import weasyprint -from matplotlib import figure as fig -from matplotlib import pyplot as plt - -if TYPE_CHECKING: - import numpy.typing as npt - import pandas as pd - from typing_extensions import Self - - from cssfinder.cssfproject import Task - - -class HTMLReport: - """HTML based report generator.""" - - def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> None: - self.ctx = _HTMLReportCtx(props, plots, task) - self.env = jinja2.Environment( - loader=jinja2.PackageLoader("cssfinder"), - autoescape=jinja2.select_autoescape(), - ) - - def render(self) -> RenderedReport: - """Render report. - - Returns - ------- - RenderedReport - Report handle providing interface for saving report. - - """ - template = self.env.get_template("report.html.jinja2") - - return RenderedReport(template.render(ctx=self.ctx)) - - -@dataclass -class _HTMLReportCtx: - props: SlopeProperties - plots: list[Plot] - task: Task - - @property - def title(self) -> str: - return f"Report {self.task.output.parent.parent.name} / {self.task.name}" - - @property - def meta(self) -> OrderedDict: - """Return project metadata.""" - return OrderedDict( - { - "Project name": self.task.project.meta.name, - "Task name": self.task.name, - "Author": self.task.project.meta.author, - "Email": self.task.project.meta.email, - "Description": self.task.project.meta.description, - "Version": self.task.project.meta.version, - } - ) - - @property - def math_props(self) -> OrderedDict: - """Return mathematical properties.""" - return OrderedDict( - { - "Hilbert-Schmidt distance": f"{self.props.optimum:.3f}", - "Sample correlation coefficient": f"{self.props.r_value:.3f}", - } - ) - - -class RenderedReport: - """Container for rendered report.""" - - def __init__(self, content: str) -> None: - self.content = content - - def save_to(self, dest: Path) -> None: - """Save report to a file. - - Parameters - ---------- - dest : Path - Path to destination file. - - """ - dest.write_text(self.content, "utf-8") - - def save_pdf(self, dest: Path) -> None: - """Save content as PDF. - - Parameters - ---------- - dest : Path - Path to destination file. - - """ - weasyprint.HTML(string=self.content).write_pdf(target=dest.as_posix()) - - -class Plotter: - """Plot creator class.""" - - def __init__(self, corrections: pd.DataFrame) -> None: - """Initialize plot creator. - - Parameters - ---------- - corrections : pandas.DataFrame - A DataFrame containing the distance decay corrections. The DataFrame - should have an "index" column and a "value" column. - - """ - self.corrections = corrections - self.slope_props = SlopeProperties.find(self.corrections.to_numpy()) - - def plot_corrections(self, axes: Optional[plt.Axes] = None) -> Plot: - """Create a plot of distance decay corrections. - - Parameters - ---------- - axes : Optional[plt.Axes], optional - Optional axes object to reuse, when none is given, new figure is created, - by default None - - Returns - ------- - Plot - Plot object containing plot axes. - - Notes - ----- - The function creates a line plot of the distance decay corrections, - with the "index" column on the x-axis and the "value" column on the - y-axis. The plot includes a grid and axis labels, and a title indicating - that it shows distance decay. - - The function returns the Plot object granting access to axes for the created - plot, which can be further customized or saved using the methods of the - matplotlib API. - - """ - if axes is None: - plt.figure() - axes = plt.subplot() - - axes.plot( - self.corrections[["index"]], self.corrections[["value"]], label="correction" - ) - axes.hlines( - [self.slope_props.optimum], - xmin=-10, - xmax=self.corrections[["index"]].max(), - color="red", - label="H-S distance", - ) - axes.grid(visible=True) - - axes.set_xlabel("Correction index") - axes.set_ylabel("Correction value") - - axes.set_title("Distance decay") - plt.legend(loc="upper right") - - return Plot(axes) - - def plot_corrections_inverse(self, axes: Optional[plt.Axes] = None) -> Plot: - """Create a plot offsets inverse of distance decay corrections. - - Parameters - ---------- - axes : Optional[plt.Axes], optional - Optional axes object to reuse, when none is given, new figure is created, - by default None - - Returns - ------- - Plot - Plot object containing plot axes. - - Notes - ----- - The function creates a line plot of the inverse of distance decay corrections, - with the "index" column on the x-axis and the "value" column inverse on the - y-axis. The plot includes a grid and axis labels, and a title indicating - that it shows distance decay. - - The function returns the Plot object granting access to axes for the created - plot, which can be further customized or saved using the methods of the - matplotlib API. - - """ - if axes is None: - plt.figure() - axes = plt.subplot() - - axes.plot( - self.corrections[["index"]], - 1 / (self.corrections[["value"]] - self.slope_props.optimum), - ) - axes.grid(visible=True) - - axes.set_xlabel("Correction index") - axes.set_ylabel("Correction offsetted inverse value") - - axes.set_title("Distance offsetted inverse decay") - - return Plot(axes) - - def plot_iteration(self, axes: Optional[plt.Axes] = None) -> Plot: - """Create a plot of iteration linear corrections. - - Returns - ------- - matplotlib.axes.Axes - The axes object for the created plot. - - Notes - ----- - The function creates a line plot of the iteration linear corrections, - with the "iteration" column on the x-axis and the correction values on - the y-axis. The correction values are calculated using the - `SlopeProperties` class, which takes the "index" column as input and - returns the corresponding correction values for each iteration. - - The plot includes a grid and axis labels, but no title. The function returns - the axes object for the created plot, which can be further customized or - saved using the methods of the matplotlib API. - - """ - if axes is None: - plt.figure() - axes = plt.subplot() - - axes.grid(visible=True) - - axes.set_xlabel("Iteration index") - axes.set_ylabel("Correction index") - - axes.set_title("Total number of correction") - - axes.plot( - self.corrections[["iteration"]], - self.corrections[["index"]], - ) - axes.plot( - self.corrections[["iteration"]], - self.corrections[["index"]], - ) - - return Plot(axes) - - -@dataclass -class Plot: - """Container class for plots generated with Plotter class.""" - - axes: plt.Axes - - @property - def figure(self) -> fig.Figure: - """Axes figure.""" - return self.axes.figure - - def configure(self, width: int = 8, height: int = 6) -> Self: - """Set the size of the current figure. - - Parameters - ---------- - width : int, optional - The width of the figure in inches. Default is 10. - height : int, optional - The height of the figure in inches. Default is 10. - - Returns - ------- - Self - Returns the instance of the object to allow for method chaining. - - """ - self.axes.figure.set_figwidth(width) - self.axes.figure.set_figheight(height) - return self - - def save_plot( - self, - dest: Path | BytesIO, - dpi: int = 300, - file_format: Optional[str] = None, - ) -> None: - """Save figure to file. - - Parameters - ---------- - dest : Path | BytesIO - Path to file or writable BytesIO. - dpi : int, optional - Plot output dpi, by default 150 - file_format : Optional[str], optional - File format, when None, deduced from file path, by default None - - """ - self.axes.figure.savefig( - dest.as_posix() if isinstance(dest, Path) else dest, - dpi=dpi, - format=file_format, - ) - - def base64_encode(self, file_format: Optional[str] = None) -> str: - """Encode plot as base64 string. - - Parameters - ---------- - file_format : Optional[str], optional - Preferred file format, by default None - - Returns - ------- - str - Encoded image. - - """ - io = BytesIO() - self.save_plot(io, file_format=file_format) - io.seek(0) - - return base64.b64encode(io.read()).decode("utf-8") - - -@dataclass -class SlopeProperties: - """Class that encapsulates slope properties and provides methods to calculate - correction values and find slope properties for a given dataset. - - Attributes - ---------- - optimum: np.float64 - The optimum value found during the slope property calculation. - r_value: np.float64 - The r-value calculated for the slope properties. - aa1: np.float64 - The slope of the trend line of the correction index with respect to iteration - index. - bb1: np.float64 - The exponential decay coefficient calculated for the slope properties. - - Methods - ------- - get_correction(x: npt.NDArray[np.float64]) -> np.float64: - Returns the correction values for a given input array `x`. - find(data: npt.NDArray[np.float64]) -> 'SlopeProperties': - Finds the slope properties for a given dataset `data`. - - """ - - optimum: np.float64 - r_value: np.float64 - aa1: np.float64 - bb1: np.float64 - - def get_correction_count(self, x: np.float64) -> np.float64: - """Return the correction values for a given input array `x`. - - Parameters - ---------- - x: npt.NDArray[np.float64] - Input array for which correction values will be calculated. - - Returns - ------- - np.float64 - The correction values calculated for the input array `x`. - - """ - return np.multiply( # type: ignore[no-any-return] - np.power(x, self.aa1), - self.bb1, - ) - - @classmethod - def find(cls, data: npt.NDArray[np.float64]) -> Self: - """Find the slope properties for a given dataset `data`. - - Parameters - ---------- - data: npt.NDArray[np.float64] - The dataset for which slope properties will be calculated. - - Returns - ------- - SlopeProperties - An instance of the SlopeProperties class representing the slope properties - of the input data. - - """ - iteration_index: npt.NDArray[np.float64] = data[:, 0] - correction_index: npt.NDArray[np.float64] = data[:, 1] - correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] - - optimum = find_correction_optimum(data[:, 2]) - - r_value = R(correction_value, optimum) - - aa1 = trend(iteration_index, correction_index) - bb1 = np.exp(offset(iteration_index, correction_index)) - - return cls(optimum, r_value, aa1, bb1) - - def save_to(self, dest: Path) -> None: - """Save properties to file.""" - with dest.open("w", encoding="utf-8") as file: - json.dump(asdict(self), file) - - -def cov( - array_1: npt.NDArray[np.float64], - array_2: npt.NDArray[np.float64], -) -> np.float64: - """Calculate the covariance between two arrays. - - Parameters - ---------- - array_1 : numpy.ndarray - The first array. - array_2 : numpy.ndarray - The second array. - - Returns - ------- - float - The covariance between the two arrays. - - Notes - ----- - The covariance is calculated as the mean of the element-wise product of - the deviation from the mean of `array_1` and `array_2`. In other words, - the covariance measures how much two variables change together, and it - is a measure of the linear relationship between them. - - """ - return np.mean( # type: ignore[no-any-return] - np.multiply( - np.subtract(array_1, np.mean(array_1)), - np.subtract(array_2, np.mean(array_2)), - ), - ) - - -def trend( - array_1: npt.NDArray[np.float64], - array_2: npt.NDArray[np.float64], -) -> np.float64: - """Calculate the trend between two arrays. - - Parameters - ---------- - array_1 : numpy.ndarray - The first array. - array_2 : numpy.ndarray - The second array. - - Returns - ------- - float - The trend between the two arrays. - - Notes - ----- - The trend is calculated as the covariance between the logarithm of - `array_1` and `array_2` divided by the covariance between the logarithm - of `array_1` and itself. - - """ - l1a = np.log(array_1) - l2a = np.log(array_2) - - return cov(l1a, l2a) / cov(l1a, l1a) - - -def offset( - array_1: npt.NDArray[np.float64], - array_2: npt.NDArray[np.float64], -) -> np.float64: - """Calculate the offset between the two input arrays. - - Offset is based on their logarithmic means and a decay trend. - - Parameters - ---------- - array_1 : numpy.ndarray[np.float64] - The first input array. - array_2 : numpy.ndarray[np.float64] - The second input array. - - Returns - ------- - numpy.float64 - The calculated offset between the two input arrays. - - Raises - ------ - ValueError - If the input arrays are empty. - - Examples - -------- - ``` - >>> array_1 = np.array([1.0, 2.0, 3.0]) - >>> array_2 = np.array([4.0, 5.0, 6.0]) - >>> offset(array_1, array_2) - 0.01638058574365686 - - ``` - - """ - array_1_mean = np.mean(np.log(array_1)) - array_2_mean = np.mean(np.log(array_2)) - decay_trend = trend(array_1, array_2) - - return array_1_mean - array_2_mean * decay_trend # type: ignore[no-any-return] - - -def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: - """Find the optimum correction value for a given input array of values. - - Parameters - ---------- - values : numpy.ndarray[np.float64] - The input array of values for which to find the optimum correction. - - Returns - ------- - numpy.float64 - The optimum correction value for the input array of values. - - """ - values = values - upper_half = values[len(values) // 2 :] - - optimum = upper_half[-1] - 1e-6 - step1 = optimum / 10000 - - while R(upper_half, optimum - step1) > R(upper_half, optimum) and optimum > 0: - optimum = optimum - step1 - - return optimum # type: ignore[no-any-return] - - -@lru_cache(16) -def _r_indexes(length: int) -> npt.NDArray[np.float64]: - indexes = np.arange(length) - difference = np.mean(np.square(indexes)) - np.square(np.mean(indexes)) - return difference # type: ignore[no-any-return] - - -@lru_cache(16) -def _indexes(length: int) -> npt.NDArray[np.float64]: - return np.arange(length, dtype=np.float64) - - -def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: # noqa: N802 - """Calculate the R value for a given input array of values and a correction factor. - - Parameters - ---------- - values : numpy.ndarray[np.float64] - The input array of values for which to calculate the R value. - a : numpy.float64 - The correction factor to use when calculating the R value. - - Returns - ------- - numpy.float64 - The R value for the input array of values and correction factor. - - """ - ll1 = np.divide(1.0, np.subtract(values, a)) - length = len(values) - indexes = _indexes(length) - - aa1: np.float64 = np.mean(np.multiply(ll1, indexes)) - np.mean(ll1) * np.mean( - indexes, - ) - aa2: np.float64 = np.sqrt( - (np.mean(np.square(ll1)) - np.square(np.mean(ll1))) * _r_indexes(length), - ) - - return np.divide(aa1, aa2, dtype=np.float64) # type: ignore[no-any-return] - - -def display_short_report(data: npt.NDArray[np.float64]) -> None: - """Display short report.""" - slope_properties = SlopeProperties.find(data) - - expr = f"corrections = trail ^ {slope_properties.aa1} * {slope_properties.bb1}" - - sys.stdout.write( - "Basing on decay, the squared HS distance is estimated to be " - f"{slope_properties.optimum} (R={slope_properties.r_value})\n", - ) - sys.stdout.write( - f"The dependence between correction and trail is approximately: {expr}\n", - ) diff --git a/cssfinder/reports/__init__.py b/cssfinder/reports/__init__.py new file mode 100644 index 0000000..edaf575 --- /dev/null +++ b/cssfinder/reports/__init__.py @@ -0,0 +1,24 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Report generation tools.""" + +from __future__ import annotations diff --git a/cssfinder/reports/archive.py b/cssfinder/reports/archive.py new file mode 100644 index 0000000..47a9937 --- /dev/null +++ b/cssfinder/reports/archive.py @@ -0,0 +1,28 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Report generator outputting archive with all report files. + +In comparison to TXT reports it also includes plots. + +""" + + +from __future__ import annotations diff --git a/cssfinder/reports/html.py b/cssfinder/reports/html.py new file mode 100644 index 0000000..3a57f6a --- /dev/null +++ b/cssfinder/reports/html.py @@ -0,0 +1,50 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""HTML document based report renderer.""" + +from __future__ import annotations + +from typing import TYPE_CHECKING + +import jinja2 + +from cssfinder.reports.renderer import Renderer, Report + +if TYPE_CHECKING: + from cssfinder.cssfproject import Task + from cssfinder.reports.math import SlopeProperties + from cssfinder.reports.plotting import Plot + + +class HTMLRenderer(Renderer): + """Renderer implementation outputting HTML files content.""" + + def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> None: + super().__init__(props, plots, task) + self.env = jinja2.Environment( + loader=jinja2.PackageLoader("cssfinder"), + autoescape=jinja2.select_autoescape(), + ) + + def render(self) -> Report: + """Generate report content.""" + template = self.env.get_template("report.html.jinja2") + return Report(template.render(ctx=self.ctx).encode("utf-8")) diff --git a/cssfinder/reports/manager.py b/cssfinder/reports/manager.py new file mode 100644 index 0000000..7da34ab --- /dev/null +++ b/cssfinder/reports/manager.py @@ -0,0 +1,120 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Implementation of class wrapper around report generation process.""" + +from __future__ import annotations + +from collections import OrderedDict +from dataclasses import dataclass +from typing import TYPE_CHECKING + +from cssfinder.io.output_loader import GilbertOutputLoader +from cssfinder.reports.html import HTMLRenderer +from cssfinder.reports.pdf import PDFRenderer +from cssfinder.reports.plotting import Plot, Plotter +from cssfinder.reports.renderer import Report, ReportType + +if TYPE_CHECKING: + import pandas as pd + + from cssfinder.cssfproject import CSSFProject, Task + from cssfinder.reports.math import SlopeProperties + + +class ReportManager: + """Class wrapper around report generation process.""" + + def __init__(self, project: CSSFProject, task: Task) -> None: + """Initialize a ReportManager object with a CSSFProject and Task. + + Parameters + ---------- + project : CSSFProject + The CSSFProject object associated with the task. + task : Task + The Task object for which report will be generated. + + """ + self.project = project + self.task = task + + def prepare(self) -> PreparedReportManager: + """Prepare the data for generating a report. + + This method loads corrections from a Gilbert output file, generates plots, and + returns a PreparedReportManager object that can be used to generate a report. + + Returns + ------- + PreparedReportManager + A PreparedReportManager object that contains the data and plots needed for + generating a report. + + """ + corrections = GilbertOutputLoader().load_corrections(self.task) + + plots = OrderedDict() + + plotter = Plotter(corrections) + + plots["decay"] = plotter.plot_corrections() + plots["inverse_decay"] = plotter.plot_corrections_inverse() + plots["iterations"] = plotter.plot_iteration() + + return PreparedReportManager( + self.project, plotter.slope_props, plots, self.task, corrections + ) + + +@dataclass +class PreparedReportManager: + """Report manager with calculated report values.""" + + project: CSSFProject + props: SlopeProperties + plots: OrderedDict[str, Plot] + task: Task + corrections: pd.DataFrame + + def request_report(self, report_type: ReportType) -> Report: + """Generate report.""" + if report_type == ReportType.HTML: + return HTMLRenderer( + self.props, + [p.configure() for p in self.plots.values()], + self.task, + ).render() + + if report_type == ReportType.PDF: + return PDFRenderer( + self.props, [p.configure() for p in self.plots.values()], self.task + ).render() + + if report_type == ReportType.TXT: + msg = "Rendering of report type txt is not supported yet." + raise NotImplementedError(msg) + + if report_type == ReportType.ARCHIVE: + msg = "Rendering of report type archive is not supported yet." + raise NotImplementedError(msg) + + msg = f"Unsupported report type {report_type.name!r}" + raise TypeError(msg) diff --git a/cssfinder/reports/math.py b/cssfinder/reports/math.py new file mode 100644 index 0000000..974db3d --- /dev/null +++ b/cssfinder/reports/math.py @@ -0,0 +1,314 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Report math utilities.""" + +from __future__ import annotations + +import json +import sys +from dataclasses import asdict, dataclass +from functools import lru_cache +from typing import TYPE_CHECKING + +import numpy as np + +if TYPE_CHECKING: + from pathlib import Path + + import numpy.typing as npt + from typing_extensions import Self + + +@dataclass +class SlopeProperties: + """Class that encapsulates slope properties and provides methods to calculate + correction values and find slope properties for a given dataset. + + Attributes + ---------- + optimum: np.float64 + The optimum value found during the slope property calculation. + r_value: np.float64 + The r-value calculated for the slope properties. + aa1: np.float64 + The slope of the trend line of the correction index with respect to iteration + index. + bb1: np.float64 + The exponential decay coefficient calculated for the slope properties. + + Methods + ------- + get_correction(x: npt.NDArray[np.float64]) -> np.float64: + Returns the correction values for a given input array `x`. + find(data: npt.NDArray[np.float64]) -> 'SlopeProperties': + Finds the slope properties for a given dataset `data`. + + """ + + optimum: np.float64 + r_value: np.float64 + aa1: np.float64 + bb1: np.float64 + + def get_correction_count(self, x: np.float64) -> np.float64: + """Return the correction values for a given input array `x`. + + Parameters + ---------- + x: npt.NDArray[np.float64] + Input array for which correction values will be calculated. + + Returns + ------- + np.float64 + The correction values calculated for the input array `x`. + + """ + return np.multiply( # type: ignore[no-any-return] + np.power(x, self.aa1), + self.bb1, + ) + + @classmethod + def find(cls, data: npt.NDArray[np.float64]) -> Self: + """Find the slope properties for a given dataset `data`. + + Parameters + ---------- + data: npt.NDArray[np.float64] + The dataset for which slope properties will be calculated. + + Returns + ------- + SlopeProperties + An instance of the SlopeProperties class representing the slope properties + of the input data. + + """ + iteration_index: npt.NDArray[np.float64] = data[:, 0] + correction_index: npt.NDArray[np.float64] = data[:, 1] + correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] + + optimum = find_correction_optimum(data[:, 2]) + + r_value = R(correction_value, optimum) + + aa1 = trend(iteration_index, correction_index) + bb1 = np.exp(offset(iteration_index, correction_index)) + + return cls(optimum, r_value, aa1, bb1) + + def save_to(self, dest: Path) -> None: + """Save properties to file.""" + with dest.open("w", encoding="utf-8") as file: + json.dump(asdict(self), file) + + +def cov( + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], +) -> np.float64: + """Calculate the covariance between two arrays. + + Parameters + ---------- + array_1 : numpy.ndarray + The first array. + array_2 : numpy.ndarray + The second array. + + Returns + ------- + float + The covariance between the two arrays. + + Notes + ----- + The covariance is calculated as the mean of the element-wise product of + the deviation from the mean of `array_1` and `array_2`. In other words, + the covariance measures how much two variables change together, and it + is a measure of the linear relationship between them. + + """ + return np.mean( # type: ignore[no-any-return] + np.multiply( + np.subtract(array_1, np.mean(array_1)), + np.subtract(array_2, np.mean(array_2)), + ), + ) + + +def trend( + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], +) -> np.float64: + """Calculate the trend between two arrays. + + Parameters + ---------- + array_1 : numpy.ndarray + The first array. + array_2 : numpy.ndarray + The second array. + + Returns + ------- + float + The trend between the two arrays. + + Notes + ----- + The trend is calculated as the covariance between the logarithm of + `array_1` and `array_2` divided by the covariance between the logarithm + of `array_1` and itself. + + """ + l1a = np.log(array_1) + l2a = np.log(array_2) + + return cov(l1a, l2a) / cov(l1a, l1a) + + +def offset( + array_1: npt.NDArray[np.float64], + array_2: npt.NDArray[np.float64], +) -> np.float64: + """Calculate the offset between the two input arrays. + + Offset is based on their logarithmic means and a decay trend. + + Parameters + ---------- + array_1 : numpy.ndarray[np.float64] + The first input array. + array_2 : numpy.ndarray[np.float64] + The second input array. + + Returns + ------- + numpy.float64 + The calculated offset between the two input arrays. + + Raises + ------ + ValueError + If the input arrays are empty. + + Examples + -------- + ``` + >>> array_1 = np.array([1.0, 2.0, 3.0]) + >>> array_2 = np.array([4.0, 5.0, 6.0]) + >>> offset(array_1, array_2) + 0.01638058574365686 + + ``` + + """ + array_1_mean = np.mean(np.log(array_1)) + array_2_mean = np.mean(np.log(array_2)) + decay_trend = trend(array_1, array_2) + + return array_1_mean - array_2_mean * decay_trend # type: ignore[no-any-return] + + +def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: + """Find the optimum correction value for a given input array of values. + + Parameters + ---------- + values : numpy.ndarray[np.float64] + The input array of values for which to find the optimum correction. + + Returns + ------- + numpy.float64 + The optimum correction value for the input array of values. + + """ + values = values + upper_half = values[len(values) // 2 :] + + optimum = upper_half[-1] - 1e-6 + step1 = optimum / 10000 + + while R(upper_half, optimum - step1) > R(upper_half, optimum) and optimum > 0: + optimum = optimum - step1 + + return optimum # type: ignore[no-any-return] + + +@lru_cache(16) +def _r_indexes(length: int) -> npt.NDArray[np.float64]: + indexes = np.arange(length) + difference = np.mean(np.square(indexes)) - np.square(np.mean(indexes)) + return difference # type: ignore[no-any-return] + + +@lru_cache(16) +def _indexes(length: int) -> npt.NDArray[np.float64]: + return np.arange(length, dtype=np.float64) + + +def R(values: npt.NDArray[np.float64], a: np.float64) -> np.float64: # noqa: N802 + """Calculate the R value for a given input array of values and a correction factor. + + Parameters + ---------- + values : numpy.ndarray[np.float64] + The input array of values for which to calculate the R value. + a : numpy.float64 + The correction factor to use when calculating the R value. + + Returns + ------- + numpy.float64 + The R value for the input array of values and correction factor. + + """ + ll1 = np.divide(1.0, np.subtract(values, a)) + length = len(values) + indexes = _indexes(length) + + aa1: np.float64 = np.mean(np.multiply(ll1, indexes)) - np.mean(ll1) * np.mean( + indexes, + ) + aa2: np.float64 = np.sqrt( + (np.mean(np.square(ll1)) - np.square(np.mean(ll1))) * _r_indexes(length), + ) + + return np.divide(aa1, aa2, dtype=np.float64) # type: ignore[no-any-return] + + +def display_short_report(data: npt.NDArray[np.float64]) -> None: + """Display short report.""" + slope_properties = SlopeProperties.find(data) + + expr = f"corrections = trail ^ {slope_properties.aa1} * {slope_properties.bb1}" + + sys.stdout.write( + "Basing on decay, the squared HS distance is estimated to be " + f"{slope_properties.optimum} (R={slope_properties.r_value})\n", + ) + sys.stdout.write( + f"The dependence between correction and trail is approximately: {expr}\n", + ) diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py new file mode 100644 index 0000000..c8eace5 --- /dev/null +++ b/cssfinder/reports/pdf.py @@ -0,0 +1,69 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Renderer implementation outputting PDF file.""" + + +from __future__ import annotations + +from typing import TYPE_CHECKING, Any + +from cssfinder.reports.html import HTMLRenderer + +if TYPE_CHECKING: + from cssfinder.reports.renderer import Report + + +class WEasyPrintNotAvailableError(Exception): + """Error raised on Mac OS when attempting to generate PDF report.""" + + def __init__(self) -> None: + super().__init__( + "PDF report can't be generated as weasyprint library failed to import." + "To resolve this issue, you can try running `brew install pango` on Mac or " + "`sudo apt-get install -y libpangocairo-1.0-0` on linux." + ) + + +try: + import weasyprint + +except ImportError: + + class weasyprint: # type: ignore[no-redef] # noqa: N801 + """Dummy class for Mac OS where weasyprint fails to import.""" + + def HTML(*_a: Any, **__kw: Any) -> Any: # noqa: N802 + """Raise exception on Mac OS.""" + raise WEasyPrintNotAvailableError + + +class PDFRenderer(HTMLRenderer): + """Renderer implementation outputting PDF files content.""" + + def render(self) -> Report: + """Generate report content.""" + report = super().render() + report.content = weasyprint.HTML( + string=report.content.decode("utf-8") + ).write_pdf() + + return report diff --git a/cssfinder/reports/plotting.py b/cssfinder/reports/plotting.py new file mode 100644 index 0000000..d64b5ef --- /dev/null +++ b/cssfinder/reports/plotting.py @@ -0,0 +1,265 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Utilities for plot creation.""" + +from __future__ import annotations + +import base64 +from dataclasses import dataclass +from io import BytesIO +from pathlib import Path +from typing import TYPE_CHECKING, Optional + +from matplotlib import figure as fig +from matplotlib import pyplot as plt + +from cssfinder.reports.math import SlopeProperties + +if TYPE_CHECKING: + import pandas as pd + from typing_extensions import Self + + +class Plotter: + """Plot creator class.""" + + def __init__(self, corrections: pd.DataFrame) -> None: + """Initialize plot creator. + + Parameters + ---------- + corrections : pandas.DataFrame + A DataFrame containing the distance decay corrections. The DataFrame + should have an "index" column and a "value" column. + + """ + self.corrections = corrections + self.slope_props = SlopeProperties.find(self.corrections.to_numpy()) + + def plot_corrections(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot of distance decay corrections. + + Parameters + ---------- + axes : Optional[plt.Axes], optional + Optional axes object to reuse, when none is given, new figure is created, + by default None + + Returns + ------- + Plot + Plot object containing plot axes. + + Notes + ----- + The function creates a line plot of the distance decay corrections, + with the "index" column on the x-axis and the "value" column on the + y-axis. The plot includes a grid and axis labels, and a title indicating + that it shows distance decay. + + The function returns the Plot object granting access to axes for the created + plot, which can be further customized or saved using the methods of the + matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.plot( + self.corrections[["index"]], self.corrections[["value"]], label="correction" + ) + axes.hlines( + [self.slope_props.optimum], + xmin=-10, + xmax=self.corrections[["index"]].max(), + color="red", + label="H-S distance", + linestyles="dashed", + ) + axes.grid(visible=True) + + axes.set_xlabel("Correction index") + axes.set_ylabel("Correction value") + + axes.set_title("Distance decay") + plt.legend(loc="upper right") + + return Plot(axes) + + def plot_corrections_inverse(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot offsets inverse of distance decay corrections. + + Parameters + ---------- + axes : Optional[plt.Axes], optional + Optional axes object to reuse, when none is given, new figure is created, + by default None + + Returns + ------- + Plot + Plot object containing plot axes. + + Notes + ----- + The function creates a line plot of the inverse of distance decay corrections, + with the "index" column on the x-axis and the "value" column inverse on the + y-axis. The plot includes a grid and axis labels, and a title indicating + that it shows distance decay. + + The function returns the Plot object granting access to axes for the created + plot, which can be further customized or saved using the methods of the + matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.plot( + self.corrections[["index"]], + 1 / (self.corrections[["value"]] - self.slope_props.optimum), + ) + axes.grid(visible=True) + + axes.set_xlabel("Correction index") + axes.set_ylabel("Correction offsetted inverse value") + + axes.set_title("Distance offsetted inverse decay") + + return Plot(axes) + + def plot_iteration(self, axes: Optional[plt.Axes] = None) -> Plot: + """Create a plot of iteration linear corrections. + + Returns + ------- + matplotlib.axes.Axes + The axes object for the created plot. + + Notes + ----- + The function creates a line plot of the iteration linear corrections, + with the "iteration" column on the x-axis and the correction values on + the y-axis. The correction values are calculated using the + `SlopeProperties` class, which takes the "index" column as input and + returns the corresponding correction values for each iteration. + + The plot includes a grid and axis labels, but no title. The function returns + the axes object for the created plot, which can be further customized or + saved using the methods of the matplotlib API. + + """ + if axes is None: + plt.figure() + axes = plt.subplot() + + axes.grid(visible=True) + + axes.set_xlabel("Iteration index") + axes.set_ylabel("Correction index") + + axes.set_title("Total number of correction") + + axes.plot( + self.corrections[["iteration"]], + self.corrections[["index"]], + ) + + return Plot(axes) + + +@dataclass +class Plot: + """Container class for plots generated with Plotter class.""" + + axes: plt.Axes + + @property + def figure(self) -> fig.Figure: + """Axes figure.""" + return self.axes.figure + + def configure(self, width: int = 8, height: int = 6) -> Self: + """Set the size of the current figure. + + Parameters + ---------- + width : int, optional + The width of the figure in inches. Default is 10. + height : int, optional + The height of the figure in inches. Default is 10. + + Returns + ------- + Self + Returns the instance of the object to allow for method chaining. + + """ + self.axes.figure.set_figwidth(width) + self.axes.figure.set_figheight(height) + return self + + def save_plot( + self, + dest: Path | BytesIO, + dpi: int = 300, + file_format: Optional[str] = None, + ) -> None: + """Save figure to file. + + Parameters + ---------- + dest : Path | BytesIO + Path to file or writable BytesIO. + dpi : int, optional + Plot output dpi, by default 150 + file_format : Optional[str], optional + File format, when None, deduced from file path, by default None + + """ + self.axes.figure.savefig( + dest.as_posix() if isinstance(dest, Path) else dest, + dpi=dpi, + format=file_format, + ) + + def base64_encode(self, file_format: Optional[str] = None) -> str: + """Encode plot as base64 string. + + Parameters + ---------- + file_format : Optional[str], optional + Preferred file format, by default None + + Returns + ------- + str + Encoded image. + + """ + io = BytesIO() + self.save_plot(io, file_format=file_format) + io.seek(0) + + return base64.b64encode(io.read()).decode("utf-8") diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py new file mode 100644 index 0000000..fb1cd24 --- /dev/null +++ b/cssfinder/reports/renderer.py @@ -0,0 +1,121 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Abstract base class for implementing report renderers.""" + + +from __future__ import annotations + +from abc import ABC, abstractmethod +from collections import OrderedDict +from dataclasses import dataclass +from enum import Enum +from typing import TYPE_CHECKING + +if TYPE_CHECKING: + from pathlib import Path + + from cssfinder.cssfproject import Task + from cssfinder.reports.math import SlopeProperties + from cssfinder.reports.plotting import Plot + + +class ReportType(Enum): + """Possible report types.""" + + HTML = "html" + PDF = "pdf" + ARCHIVE = "zip" + TXT = "txt" + + +class Renderer(ABC): + """Base class for creating report renderers.""" + + def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> None: + self.ctx = Ctx(props, plots, task) + + @abstractmethod + def render(self) -> Report: + """Render report. + + Returns + ------- + RenderedReport + Report handle providing interface for saving report. + + """ + + +@dataclass +class Ctx: + """Report template rendering context.""" + + props: SlopeProperties + plots: list[Plot] + task: Task + + @property + def title(self) -> str: + """Document title.""" + return f"Report {self.task.output.parent.parent.name} / {self.task.name}" + + @property + def meta(self) -> OrderedDict: + """Return project metadata.""" + return OrderedDict( + { + "Project name": self.task.project.meta.name, + "Task name": self.task.name, + "Author": self.task.project.meta.author, + "Email": self.task.project.meta.email, + "Description": self.task.project.meta.description, + "Version": self.task.project.meta.version, + } + ) + + @property + def math_props(self) -> OrderedDict: + """Return mathematical properties.""" + return OrderedDict( + { + "Hilbert-Schmidt distance": f"{self.props.optimum:.3f}", + "Sample correlation coefficient": f"{self.props.r_value:.3f}", + } + ) + + +class Report: + """Container for rendered report.""" + + def __init__(self, content: bytes) -> None: + self.content = content + + def save_to(self, dest: Path) -> None: + """Save report to a file. + + Parameters + ---------- + dest : Path + Path to destination file. + + """ + dest.write_bytes(self.content) diff --git a/cssfinder/reports/txt.py b/cssfinder/reports/txt.py new file mode 100644 index 0000000..a9f550d --- /dev/null +++ b/cssfinder/reports/txt.py @@ -0,0 +1,23 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Text based report renderer.""" + +from __future__ import annotations From bf3fd50250013a531767dd19bea1bd3b7d7c219e Mon Sep 17 00:00:00 2001 From: argmaster Date: Sat, 11 Mar 2023 01:27:10 +0100 Subject: [PATCH 092/227] Fix weasyprint import error try block --- cssfinder/reports/pdf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index c8eace5..6c2aa9e 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -46,7 +46,7 @@ def __init__(self) -> None: try: import weasyprint -except ImportError: +except (ImportError, OSError): class weasyprint: # type: ignore[no-redef] # noqa: N801 """Dummy class for Mac OS where weasyprint fails to import.""" From 94a10b6d5c6c33bf8228da19090dc5e75a8b1211 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 17:43:16 +0100 Subject: [PATCH 093/227] Add tests for reports generation --- .pre-commit-config.yaml | 2 +- test/test_system/base.py | 64 ++++++++++++++++--------- test/test_system/test_reports.py | 82 ++++++++++++++++++++++++++++++++ 3 files changed, 125 insertions(+), 23 deletions(-) create mode 100644 test/test_system/test_reports.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c27280a..b8ea2bd 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -11,7 +11,7 @@ repos: -d, cssfinder, -d, - tests, + test, -d, scripts, -d, diff --git a/test/test_system/base.py b/test/test_system/base.py index 8076ae5..0dd8af1 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -22,6 +22,7 @@ from __future__ import annotations +import shutil from dataclasses import dataclass from typing import TYPE_CHECKING @@ -37,35 +38,28 @@ import pandas as pd -class ModeTest: - """Base class for simple mode test suite.""" - - @dataclass - class MinMax: - """Well named container for max and min values of floating range.""" - - min: float # noqa: A003 # not needed in this scope - """Minimal value of range.""" - - max: float # noqa: A003 # not needed in this scope - """Maximal value of range.""" +class SetupRunProjectMixin: + """Mixin class providing class setup running specific project.""" - EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int PROJECT_PATH: Path TEST_TASK_NAME: str - OUT_STATE_ROW_COUNT: int - OUT_STATE_COL_COUNT: int - - MIN_CORRECTION_VALUE: float - MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax - corrections: pd.DataFrame """List of corrections obtained from cssfinder.""" state: npt.NDArray[np.complex128] """Final state matrix.""" + @classmethod + def get_project_directory(cls) -> Path: + """Path to project directory.""" + return cls.PROJECT_PATH + + @classmethod + def get_output_directory(cls) -> Path: + """Path to output directory.""" + return cls.PROJECT_PATH / "output" / cls.TEST_TASK_NAME + @classmethod def setup_class(cls) -> None: """Run class setup. @@ -83,9 +77,35 @@ def setup_class(cls) -> None: ) @classmethod - def get_output_directory(cls) -> Path: - """Path to output directory.""" - return cls.PROJECT_PATH / "output" / cls.TEST_TASK_NAME + def teardown_class(cls) -> None: + """Clean up after class. + + Executed once for class, shared between tests within class. + + """ + shutil.rmtree(cls.get_output_directory()) + + +class ModeTest(SetupRunProjectMixin): + """Base class for simple mode test suite.""" + + @dataclass + class MinMax: + """Well named container for max and min values of floating range.""" + + min: float # noqa: A003 # not needed in this scope + """Minimal value of range.""" + + max: float # noqa: A003 # not needed in this scope + """Maximal value of range.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int + + OUT_STATE_ROW_COUNT: int + OUT_STATE_COL_COUNT: int + + MIN_CORRECTION_VALUE: float + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax def test_number_of_corrections(self) -> None: """Check if valid number of corrections was saved.""" diff --git a/test/test_system/test_reports.py b/test/test_system/test_reports.py new file mode 100644 index 0000000..cebd44e --- /dev/null +++ b/test/test_system/test_reports.py @@ -0,0 +1,82 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Tests validating reports generation.""" + +from __future__ import annotations + +from pathlib import Path +from platform import system +from test.test_system.base import SetupRunProjectMixin + +import pytest + +from cssfinder.api import create_report_from +from cssfinder.reports.pdf import WEasyPrintNotAvailableError +from cssfinder.reports.renderer import ReportType + + +class ReportTestBase(SetupRunProjectMixin): + """Validate report behavior.""" + + PROJECT_PATH = Path.cwd() / "examples" / "5qubits" + TEST_TASK_NAME: str = "test_fsnqd_5qubits" + REPORT_TYPE: ReportType + + def generate_report(self, report_type: ReportType) -> None: + """Generate report.""" + create_report_from( + self.get_project_directory(), self.TEST_TASK_NAME, [report_type] + ) + + def get_report_path(self, report_type: ReportType) -> Path: + """Find report file.""" + return self.get_output_directory() / f"report.{report_type.name.lower()}" + + def delete_report(self, report_type: ReportType) -> None: + """Delete report file.""" + self.get_report_path(report_type).unlink() + + def test_report_exists(self) -> None: + """Find HTML report file.""" + self.generate_report(self.REPORT_TYPE) + report_path = self.get_report_path(self.REPORT_TYPE) + + assert report_path.exists() + + +class TestReportHTML(ReportTestBase): + """Validate report behavior.""" + + REPORT_TYPE = ReportType.HTML + + +class TestReportPDF(ReportTestBase): + """Validate report behavior.""" + + REPORT_TYPE = ReportType.PDF + + def test_report_exists(self) -> None: + """Find HTML report file.""" + if system() == "Darwin": + with pytest.raises(WEasyPrintNotAvailableError): + super().test_report_exists() + else: + super().test_report_exists() From 418dce6491d5e74e9ce1b869b65b344f2b563d40 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 20:01:48 +0100 Subject: [PATCH 094/227] Expand reports tests to covert PDF failures on windows and macOS --- .github/workflows/code_quality.yaml | 4 +- .github/workflows/reports_tests.yaml | 82 +++++++++ .github/workflows/system_tests.yaml | 4 +- .github/workflows/type_check.yaml | 2 +- cssfinder/reports/pdf.py | 26 ++- poetry.lock | 155 ++++++++++-------- pyproject.toml | 14 +- test/conftest.py | 61 +++++++ test/test_reports/__init__.py | 23 +++ .../test_reports.py => test_reports/base.py} | 29 +--- test/test_reports/test_html.py | 33 ++++ test/test_reports/test_pdf.py | 42 +++++ 12 files changed, 359 insertions(+), 116 deletions(-) create mode 100644 .github/workflows/reports_tests.yaml create mode 100644 test/conftest.py create mode 100644 test/test_reports/__init__.py rename test/{test_system/test_reports.py => test_reports/base.py} (78%) create mode 100644 test/test_reports/test_html.py create mode 100644 test/test_reports/test_pdf.py diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 60535cc..7c54499 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -32,12 +32,12 @@ on: concurrency: group: ${{ github.workflow_ref }}-${{ github.ref }}-code-quality - cancel-in-progress: true + cancel-in-progress: false jobs: code-quality-check: strategy: - fail-fast: true + fail-fast: false matrix: os: [ubuntu-latest] python-version: ["3.9", "3.10"] diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml new file mode 100644 index 0000000..0ec8aac --- /dev/null +++ b/.github/workflows/reports_tests.yaml @@ -0,0 +1,82 @@ +--- +name: Reports Tests + +on: + push: + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + + pull_request: + branches: + - main + - dev + - fix/** + - hotfix/** + - feature/** + - release/** + - dependabot/** + types: + - opened + - reopened + + schedule: + - cron: 0 12 * * 6 + + workflow_dispatch: + +concurrency: + group: ${{ github.workflow_ref }}-${{ github.ref }}-reports-tests + cancel-in-progress: false + +jobs: + reports-tests: + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest, windows-latest, macOS-latest] + python-version: ["3.8", "3.9", "3.10"] + + runs-on: ${{ matrix.os }} + + steps: + - name: Checkout code + uses: actions/checkout@v3.1.0 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4.5.0 + with: + python-version: ${{ matrix.python-version }} + architecture: "x64" + + - name: Install Poetry + run: pip install poetry + + - name: Install dependencies + run: poetry install --sync + + - name: Expect PDF reports fails (Windows only) + if: matrix.os == 'windows-latest' || matrix.os == 'macOS-latest' + run: poetry run poe test-reports --pdf-expect-fail + + - name: Install MSYS2 and GTK3 (Windows only) + if: matrix.os == 'windows-latest' + run: | + choco install -y msys2 + C:\tools\msys64\usr\bin\bash.exe -lc "pacman -Syu --noconfirm" + C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-gtk3" + + - name: Install brew and GTK3 (macOS only) + if: matrix.os == 'macOS-latest' + run: | + /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)" + brew update + brew install gtk+3 + + - name: Run reports tests + run: poetry run poe test-reports diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index c4126b4..80cf050 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -32,12 +32,12 @@ on: concurrency: group: ${{ github.workflow_ref }}-${{ github.ref }}-system-tests - cancel-in-progress: true + cancel-in-progress: false jobs: system-tests: strategy: - fail-fast: true + fail-fast: false matrix: os: [ubuntu-latest, windows-latest, macOS-latest] python-version: ["3.8", "3.9", "3.10"] diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index b0d9e38..7cae78c 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -32,7 +32,7 @@ on: concurrency: group: ${{ github.workflow_ref }}-${{ github.ref }}-type-check - cancel-in-progress: true + cancel-in-progress: false jobs: type-check: diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index 6c2aa9e..0d917d9 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -24,6 +24,8 @@ from __future__ import annotations +import logging +from platform import system from typing import TYPE_CHECKING, Any from cssfinder.reports.html import HTMLRenderer @@ -32,21 +34,33 @@ from cssfinder.reports.renderer import Report +WEASYPRINT_NOT_AVAILABLE = ( + "CSSFinder failed to load PDF rendering backend. Therefore PDF reports are " + "unavailable. To overcome this issue, visit `weasyprint` documentation " + "installation guidelines on " + "https://doc.courtbouillon.org/weasyprint/stable/first_steps.html#installation " + "and follow instructions for you platform (" + f"{system() if system() != 'Darwin' else 'macOS'}). " +) + + class WEasyPrintNotAvailableError(Exception): """Error raised on Mac OS when attempting to generate PDF report.""" def __init__(self) -> None: - super().__init__( - "PDF report can't be generated as weasyprint library failed to import." - "To resolve this issue, you can try running `brew install pango` on Mac or " - "`sudo apt-get install -y libpangocairo-1.0-0` on linux." - ) + super().__init__(WEASYPRINT_NOT_AVAILABLE) try: import weasyprint -except (ImportError, OSError): +except (ImportError, OSError) as exc: + logging.warning(WEASYPRINT_NOT_AVAILABLE) + logging.warning( + "Error details:\n\n%s: %s", + exc.__class__.__qualname__, + str(exc), + ) class weasyprint: # type: ignore[no-redef] # noqa: N801 """Dummy class for Mac OS where weasyprint fails to import.""" diff --git a/poetry.lock b/poetry.lock index 8bf6e46..559ecdb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. [[package]] name = "appdirs" @@ -33,14 +33,14 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy [[package]] name = "autoflake" -version = "2.0.1" +version = "2.0.2" description = "Removes unused imports and unused variables" category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "autoflake-2.0.1-py3-none-any.whl", hash = "sha256:143b0843667734af53532c443e950c787316b9b1155b2273558260b44836e8e4"}, - {file = "autoflake-2.0.1.tar.gz", hash = "sha256:1ce520131b7f396915242fe91e57221f4d42408529bbe3ae93adafed286591e0"}, + {file = "autoflake-2.0.2-py3-none-any.whl", hash = "sha256:a82d8efdcbbb7129a8a23238c529fb9d9919c562e26bb7963ea6890fbfff7d02"}, + {file = "autoflake-2.0.2.tar.gz", hash = "sha256:e0164421ff13f805f08a023e249d84200bd00463d213b490906bfefa67e83830"}, ] [package.dependencies] @@ -898,14 +898,14 @@ lxml = ["lxml"] [[package]] name = "identify" -version = "2.5.18" +version = "2.5.20" description = "File identification library for Python" category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "identify-2.5.18-py2.py3-none-any.whl", hash = "sha256:93aac7ecf2f6abf879b8f29a8002d3c6de7086b8c28d88e1ad15045a15ab63f9"}, - {file = "identify-2.5.18.tar.gz", hash = "sha256:89e144fa560cc4cffb6ef2ab5e9fb18ed9f9b3cb054384bab4b95c12f6c309fe"}, + {file = "identify-2.5.20-py2.py3-none-any.whl", hash = "sha256:5dfef8a745ca4f2c95f27e9db74cb4c8b6d9916383988e8791f3595868f78a33"}, + {file = "identify-2.5.20.tar.gz", hash = "sha256:c8b288552bc5f05a08aff09af2f58e6976bf8ac87beb38498a0e3d98ba64eb18"}, ] [package.extras] @@ -1438,64 +1438,75 @@ files = [ [[package]] name = "msgpack" -version = "1.0.4" +version = "1.0.5" description = "MessagePack serializer" category = "dev" optional = false python-versions = "*" files = [ - {file = "msgpack-1.0.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:4ab251d229d10498e9a2f3b1e68ef64cb393394ec477e3370c457f9430ce9250"}, - {file = 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"scripts.gen_numpy_impl:main" } -test-system = [ - { cmd = "poetry install --sync --no-ansi" }, - { cmd = "pytest test/test_system -v --cov" } -] +test-system = { cmd = "pytest test/test_system -v --cov" } +test-reports = { cmd = "pytest test/test_reports -v --cov" } type-check = [ { cmd = "poetry install --sync --no-ansi" }, - { cmd = "mypy cssfinder test scripts" } + { cmd = "mypy cssfinder test scripts" }, ] [build-system] diff --git a/test/conftest.py b/test/conftest.py new file mode 100644 index 0000000..d30bde0 --- /dev/null +++ b/test/conftest.py @@ -0,0 +1,61 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Pytest configuration hooks.""" + +from __future__ import annotations + +from typing import Iterable + +import pytest + + +def pytest_addoption(parser: pytest.Parser) -> None: + """Define a new option, pytest hook.""" + parser.addoption( + "--pdf-expect-fail", + action="store_true", + default=False, + help="run slow tests", + ) + + +def pytest_configure(config: pytest.Config) -> None: + """Modify pytest configuration, pytest hook.""" + config.addinivalue_line("markers", "pdf_expect_fail: mark test as slow to run") + + +def pytest_collection_modifyitems( + config: pytest.Config, items: Iterable[pytest.Item] +) -> None: + """Modify list of tests.""" + if config.getoption("--pdf-expect-fail"): + skip_mark = pytest.mark.skip( + reason="Running only @pytest.mark.pdf_expect_fail (--pdf-expect-fail used)." + ) + for item in items: + if "pdf_expect_fail" not in item.keywords: + item.add_marker(skip_mark) + + else: + skip_mark = pytest.mark.skip(reason="use --pdf-expect-fail to run.") + for item in items: + if "pdf_expect_fail" in item.keywords: + item.add_marker(skip_mark) diff --git a/test/test_reports/__init__.py b/test/test_reports/__init__.py new file mode 100644 index 0000000..0c9c980 --- /dev/null +++ b/test/test_reports/__init__.py @@ -0,0 +1,23 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Groups tests for reports generation.""" + +from __future__ import annotations diff --git a/test/test_system/test_reports.py b/test/test_reports/base.py similarity index 78% rename from test/test_system/test_reports.py rename to test/test_reports/base.py index cebd44e..9d4c483 100644 --- a/test/test_system/test_reports.py +++ b/test/test_reports/base.py @@ -23,14 +23,13 @@ from __future__ import annotations from pathlib import Path -from platform import system from test.test_system.base import SetupRunProjectMixin - -import pytest +from typing import TYPE_CHECKING from cssfinder.api import create_report_from -from cssfinder.reports.pdf import WEasyPrintNotAvailableError -from cssfinder.reports.renderer import ReportType + +if TYPE_CHECKING: + from cssfinder.reports.renderer import ReportType class ReportTestBase(SetupRunProjectMixin): @@ -60,23 +59,3 @@ def test_report_exists(self) -> None: report_path = self.get_report_path(self.REPORT_TYPE) assert report_path.exists() - - -class TestReportHTML(ReportTestBase): - """Validate report behavior.""" - - REPORT_TYPE = ReportType.HTML - - -class TestReportPDF(ReportTestBase): - """Validate report behavior.""" - - REPORT_TYPE = ReportType.PDF - - def test_report_exists(self) -> None: - """Find HTML report file.""" - if system() == "Darwin": - with pytest.raises(WEasyPrintNotAvailableError): - super().test_report_exists() - else: - super().test_report_exists() diff --git a/test/test_reports/test_html.py b/test/test_reports/test_html.py new file mode 100644 index 0000000..23ea4e7 --- /dev/null +++ b/test/test_reports/test_html.py @@ -0,0 +1,33 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Groups tests for HTML reports generation.""" + +from __future__ import annotations + +from test.test_reports.base import ReportTestBase + +from cssfinder.reports.renderer import ReportType + + +class TestReportHTML(ReportTestBase): + """Validate report behavior.""" + + REPORT_TYPE = ReportType.HTML diff --git a/test/test_reports/test_pdf.py b/test/test_reports/test_pdf.py new file mode 100644 index 0000000..9b6e5c7 --- /dev/null +++ b/test/test_reports/test_pdf.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""Groups tests for PDF reports generation.""" + +from __future__ import annotations + +from test.test_reports.base import ReportTestBase + +import pytest + +from cssfinder.reports.pdf import WEasyPrintNotAvailableError +from cssfinder.reports.renderer import ReportType + + +class TestReportPDF(ReportTestBase): + """Validate report behavior.""" + + REPORT_TYPE = ReportType.PDF + + @pytest.mark.pdf_expect_fail() + def test_expect_pdf_rendering_fail(self) -> None: + """Find HTML report file.""" + with pytest.raises(WEasyPrintNotAvailableError): + super().test_report_exists() From afbc987164264f6c55512206a28e553b6ff14d1a Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 21:01:22 +0100 Subject: [PATCH 095/227] Fix for windows reports CI --- .github/workflows/reports_tests.yaml | 3 ++- cssfinder/reports/pdf.py | 8 +++----- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 0ec8aac..4b19616 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -60,7 +60,7 @@ jobs: - name: Install dependencies run: poetry install --sync - - name: Expect PDF reports fails (Windows only) + - name: Expect PDF reports fails (Windows|macOS) if: matrix.os == 'windows-latest' || matrix.os == 'macOS-latest' run: poetry run poe test-reports --pdf-expect-fail @@ -70,6 +70,7 @@ jobs: choco install -y msys2 C:\tools\msys64\usr\bin\bash.exe -lc "pacman -Syu --noconfirm" C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-gtk3" + echo "WEASYPRINT_DLL_DIRECTORIES=C:/tools/msys64/mingw64/bin" >> $GITHUB_ENV - name: Install brew and GTK3 (macOS only) if: matrix.os == 'macOS-latest' diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index 0d917d9..bac081c 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -55,12 +55,10 @@ def __init__(self) -> None: import weasyprint except (ImportError, OSError) as exc: - logging.warning(WEASYPRINT_NOT_AVAILABLE) - logging.warning( - "Error details:\n\n%s: %s", - exc.__class__.__qualname__, - str(exc), + WEASYPRINT_NOT_AVAILABLE += ( + f"\n\nError details:\n\n{exc.__class__.__qualname__}: {exc}" ) + logging.warning(WEASYPRINT_NOT_AVAILABLE) class weasyprint: # type: ignore[no-redef] # noqa: N801 """Dummy class for Mac OS where weasyprint fails to import.""" From aed2b8e6108bf02c09dafd1e7974578b61b9bf2a Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 21:21:05 +0100 Subject: [PATCH 096/227] Add GTK3 bindings to install on windows and add it to system path --- .github/workflows/reports_tests.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 4b19616..a13d82e 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -70,7 +70,9 @@ jobs: choco install -y msys2 C:\tools\msys64\usr\bin\bash.exe -lc "pacman -Syu --noconfirm" C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-gtk3" + C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-python3-gobject" echo "WEASYPRINT_DLL_DIRECTORIES=C:/tools/msys64/mingw64/bin" >> $GITHUB_ENV + echo "C:/tools/msys64/mingw64/bin" >> $GITHUB_PATH - name: Install brew and GTK3 (macOS only) if: matrix.os == 'macOS-latest' From b78f161a4903e4afc0f30f49103bcb9abc40c006 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 22:22:24 +0100 Subject: [PATCH 097/227] Make create_report_from yield report objects instead of saving them --- .github/workflows/reports_tests.yaml | 2 -- cssfinder/api.py | 40 +++++++++++++++------ cssfinder/cli.py | 3 +- cssfinder/reports/__init__.py | 8 +++++ cssfinder/reports/html.py | 8 +++-- cssfinder/reports/manager.py | 54 ++++++++++++++-------------- cssfinder/reports/pdf.py | 23 ++++++------ cssfinder/reports/renderer.py | 24 +++++++++++-- pyproject.toml | 2 +- test/test_reports/base.py | 5 +-- 10 files changed, 111 insertions(+), 58 deletions(-) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index a13d82e..0f4aa25 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -71,8 +71,6 @@ jobs: C:\tools\msys64\usr\bin\bash.exe -lc "pacman -Syu --noconfirm" C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-gtk3" C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-python3-gobject" - echo "WEASYPRINT_DLL_DIRECTORIES=C:/tools/msys64/mingw64/bin" >> $GITHUB_ENV - echo "C:/tools/msys64/mingw64/bin" >> $GITHUB_PATH - name: Install brew and GTK3 (macOS only) if: matrix.os == 'macOS-latest' diff --git a/cssfinder/api.py b/cssfinder/api.py index 6b3f872..0d4d2b2 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -23,7 +23,7 @@ from __future__ import annotations import logging -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, Iterable from cssfinder.algorithm.gilbert import Gilbert from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task @@ -34,7 +34,7 @@ if TYPE_CHECKING: from pathlib import Path - from cssfinder.reports.renderer import ReportType + from cssfinder.reports.renderer import Report, ReportType def run_project_from( @@ -110,9 +110,29 @@ def run_gilbert( def create_report_from( project_file_path: Path | str, task: str, reports: list[ReportType] -) -> None: - """Load project (`cssfproject.json`) and create report for task selected by - pattern. +) -> Iterable[Report]: + """Load project (`cssfproject.json`) and create report for task selected by pattern. + + Parameters + ---------- + project_file_path : Path | str + Path to cssfinder.json file or directory containing one. + task : str + Name or glob expression matching task name, expected to result in selection of + single task. + reports : list[ReportType] + _description_ + + Returns + ------- + Iterable[Report] + _description_ + + Yields + ------ + Iterator[Iterable[Report]] + _description_ + """ project = CSSFProject.load_project(project_file_path) logging.info( @@ -121,10 +141,12 @@ def create_report_from( project.meta.author, project.meta.email, ) - return create_report(project, task, reports) + yield from create_report(project, task, reports) -def create_report(project: CSSFProject, task: str, reports: list[ReportType]) -> None: +def create_report( + project: CSSFProject, task: str, reports: list[ReportType] +) -> Iterable[Report]: """Create report for task selected by pattern from project object.""" tasks = project.select_tasks([task]) @@ -141,9 +163,7 @@ def create_report(project: CSSFProject, task: str, reports: list[ReportType]) -> manager = ReportManager(project, task_object) prepared_manager = manager.prepare() for report_type in reports: - prepared_manager.request_report(report_type).save_to( - task_object.output / f"report.{report_type.name.lower()}" - ) + yield prepared_manager.request_report(report_type) class AmbiguousTaskKeyError(KeyError): diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 83ec072..81b491b 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -176,7 +176,8 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool) -> None: raise SystemExit(0) try: - create_report_from(ctx.project_path, task, include_report_types) + for report in create_report_from(ctx.project_path, task, include_report_types): + report.save_default() except AmbiguousTaskKeyError as exc: logging.critical(exc.args[0]) diff --git a/cssfinder/reports/__init__.py b/cssfinder/reports/__init__.py index edaf575..de1effc 100644 --- a/cssfinder/reports/__init__.py +++ b/cssfinder/reports/__init__.py @@ -22,3 +22,11 @@ """Report generation tools.""" from __future__ import annotations + +from cssfinder.reports.html import HTMLRenderer +from cssfinder.reports.manager import PreparedReportManager +from cssfinder.reports.pdf import PDFRenderer +from cssfinder.reports.renderer import ReportType + +PreparedReportManager.register_renderer(HTMLRenderer, ReportType.HTML) +PreparedReportManager.register_renderer(PDFRenderer, ReportType.PDF) diff --git a/cssfinder/reports/html.py b/cssfinder/reports/html.py index 3a57f6a..4680e05 100644 --- a/cssfinder/reports/html.py +++ b/cssfinder/reports/html.py @@ -26,7 +26,7 @@ import jinja2 -from cssfinder.reports.renderer import Renderer, Report +from cssfinder.reports.renderer import Renderer, Report, ReportType if TYPE_CHECKING: from cssfinder.cssfproject import Task @@ -47,4 +47,8 @@ def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> Non def render(self) -> Report: """Generate report content.""" template = self.env.get_template("report.html.jinja2") - return Report(template.render(ctx=self.ctx).encode("utf-8")) + return Report( + template.render(ctx=self.ctx).encode("utf-8"), + ReportType.HTML, + self.ctx.task.output / "report.html", + ) diff --git a/cssfinder/reports/manager.py b/cssfinder/reports/manager.py index 7da34ab..be1139f 100644 --- a/cssfinder/reports/manager.py +++ b/cssfinder/reports/manager.py @@ -24,13 +24,11 @@ from collections import OrderedDict from dataclasses import dataclass -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, Any, ClassVar, Type from cssfinder.io.output_loader import GilbertOutputLoader -from cssfinder.reports.html import HTMLRenderer -from cssfinder.reports.pdf import PDFRenderer from cssfinder.reports.plotting import Plot, Plotter -from cssfinder.reports.renderer import Report, ReportType +from cssfinder.reports.renderer import Renderer, Report, ReportType if TYPE_CHECKING: import pandas as pd @@ -94,27 +92,29 @@ class PreparedReportManager: task: Task corrections: pd.DataFrame - def request_report(self, report_type: ReportType) -> Report: + RENDERERS: ClassVar[dict[ReportType, Type[Renderer]]] = {} + + @classmethod + def register_renderer( + cls, renderer_cls: Type[Renderer], report_type: ReportType + ) -> None: + """Register renderer for report type.""" + cls.RENDERERS[report_type] = renderer_cls + + def request_report(self, report_type: ReportType | Any) -> Report: """Generate report.""" - if report_type == ReportType.HTML: - return HTMLRenderer( - self.props, - [p.configure() for p in self.plots.values()], - self.task, - ).render() - - if report_type == ReportType.PDF: - return PDFRenderer( - self.props, [p.configure() for p in self.plots.values()], self.task - ).render() - - if report_type == ReportType.TXT: - msg = "Rendering of report type txt is not supported yet." - raise NotImplementedError(msg) - - if report_type == ReportType.ARCHIVE: - msg = "Rendering of report type archive is not supported yet." - raise NotImplementedError(msg) - - msg = f"Unsupported report type {report_type.name!r}" - raise TypeError(msg) + renderer_cls = self.RENDERERS.get(report_type) + + if renderer_cls is None: + if isinstance(report_type, ReportType): + msg = f"Report type {report_type.name} is not supported yet." + raise NotImplementedError(msg) + + msg = f"Unknown report type {report_type!r}" + raise KeyError(msg) + + return renderer_cls( + self.props, + [p.configure() for p in self.plots.values()], + self.task, + ).render() diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index bac081c..ce77cb8 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -25,14 +25,12 @@ from __future__ import annotations import logging +import os from platform import system -from typing import TYPE_CHECKING, Any +from typing import Any from cssfinder.reports.html import HTMLRenderer - -if TYPE_CHECKING: - from cssfinder.reports.renderer import Report - +from cssfinder.reports.renderer import Report, ReportType WEASYPRINT_NOT_AVAILABLE = ( "CSSFinder failed to load PDF rendering backend. Therefore PDF reports are " @@ -43,6 +41,11 @@ f"{system() if system() != 'Darwin' else 'macOS'}). " ) +if system() == "Windows": + os.add_dll_directory( # type: ignore[attr-defined] + os.environ.get("WEASYPRINT_DLL_DIRECTORIES", "C:/tools/msys64/mingw64/bin") + ) + class WEasyPrintNotAvailableError(Exception): """Error raised on Mac OS when attempting to generate PDF report.""" @@ -74,8 +77,8 @@ class PDFRenderer(HTMLRenderer): def render(self) -> Report: """Generate report content.""" report = super().render() - report.content = weasyprint.HTML( - string=report.content.decode("utf-8") - ).write_pdf() - - return report + return Report( + weasyprint.HTML(string=report.content.decode("utf-8")).write_pdf(), + ReportType.PDF, + self.ctx.task.output / "report.pdf", + ) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index fb1cd24..7afdd84 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -28,7 +28,7 @@ from collections import OrderedDict from dataclasses import dataclass from enum import Enum -from typing import TYPE_CHECKING +from typing import TYPE_CHECKING, Optional if TYPE_CHECKING: from pathlib import Path @@ -103,11 +103,19 @@ def math_props(self) -> OrderedDict: ) +@dataclass class Report: """Container for rendered report.""" - def __init__(self, content: bytes) -> None: - self.content = content + content: bytes + report_type: ReportType + default_dest: Optional[Path] = None + + def save_default(self) -> None: + """Save file to default destination.""" + if self.default_dest is None: + raise DefaultDestinationNotSpecifiedError(self.report_type) + self.save_to(self.default_dest) def save_to(self, dest: Path) -> None: """Save report to a file. @@ -119,3 +127,13 @@ def save_to(self, dest: Path) -> None: """ dest.write_bytes(self.content) + + +class DefaultDestinationNotSpecifiedError(Exception): + """Raised when save_default() was called on Report object with no default_dest.""" + + def __init__(self, report_type: ReportType) -> None: + super().__init__( + f"Default destination for report object of type {report_type.name!r} " + "was not specified." + ) diff --git a/pyproject.toml b/pyproject.toml index 250a51d..952bbed 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" version = "0.2.1" -description = "" +description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", "Marcin Wieśniak ", diff --git a/test/test_reports/base.py b/test/test_reports/base.py index 9d4c483..ae24249 100644 --- a/test/test_reports/base.py +++ b/test/test_reports/base.py @@ -41,9 +41,10 @@ class ReportTestBase(SetupRunProjectMixin): def generate_report(self, report_type: ReportType) -> None: """Generate report.""" - create_report_from( + for report in create_report_from( self.get_project_directory(), self.TEST_TASK_NAME, [report_type] - ) + ): + report.save_default() def get_report_path(self, report_type: ReportType) -> Path: """Find report file.""" From 532f01e09fa19d9d761026155d5ed7038f03c830 Mon Sep 17 00:00:00 2001 From: argmaster Date: Sun, 12 Mar 2023 22:27:33 +0100 Subject: [PATCH 098/227] Narrow add_dll_directory condition for windows --- cssfinder/reports/pdf.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index ce77cb8..1e46e9d 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -26,6 +26,7 @@ import logging import os +from pathlib import Path from platform import system from typing import Any @@ -41,7 +42,7 @@ f"{system() if system() != 'Darwin' else 'macOS'}). " ) -if system() == "Windows": +if system() == "Windows" and Path("C:/tools/msys64/mingw64/bin").exists(): os.add_dll_directory( # type: ignore[attr-defined] os.environ.get("WEASYPRINT_DLL_DIRECTORIES", "C:/tools/msys64/mingw64/bin") ) From ce93cba2bfd5b2ce9886eb3f8a18559da3d79011 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 01:32:21 +0100 Subject: [PATCH 099/227] Extend path deduction system on windows --- cssfinder/reports/pdf.py | 15 +++++++++++---- 1 file changed, 11 insertions(+), 4 deletions(-) diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index 1e46e9d..1f3686b 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -42,10 +42,17 @@ f"{system() if system() != 'Darwin' else 'macOS'}). " ) -if system() == "Windows" and Path("C:/tools/msys64/mingw64/bin").exists(): - os.add_dll_directory( # type: ignore[attr-defined] - os.environ.get("WEASYPRINT_DLL_DIRECTORIES", "C:/tools/msys64/mingw64/bin") - ) +if system() == "Windows": + GTK_BIN_PATHS_WIN32: list[Path] = [ + Path(R"C:/tools/msys64/mingw64/bin"), + Path(R"C:/msys64/usr/bin"), + ] + if (environ_path := os.environ.get("WEASYPRINT_DLL_DIRECTORIES")) is not None: + GTK_BIN_PATHS_WIN32.append(Path(environ_path)) + + for path in GTK_BIN_PATHS_WIN32: + if path.exists(): + os.add_dll_directory(path.as_posix()) # type: ignore[attr-defined] class WEasyPrintNotAvailableError(Exception): From b338488c7736a56712d418a10f6a6f8a6f00cb99 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 01:53:59 +0100 Subject: [PATCH 100/227] Modify report tests on windows to rely on tschoonj/GTK repository --- .github/workflows/reports_tests.yaml | 13 ++++++++----- cssfinder/reports/pdf.py | 14 -------------- 2 files changed, 8 insertions(+), 19 deletions(-) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 0f4aa25..726432b 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -64,13 +64,16 @@ jobs: if: matrix.os == 'windows-latest' || matrix.os == 'macOS-latest' run: poetry run poe test-reports --pdf-expect-fail - - name: Install MSYS2 and GTK3 (Windows only) + - name: Download and extract GTK3 (Windows only) if: matrix.os == 'windows-latest' run: | - choco install -y msys2 - C:\tools\msys64\usr\bin\bash.exe -lc "pacman -Syu --noconfirm" - C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-gtk3" - C:\tools\msys64\usr\bin\bash.exe -lc "pacman -S --noconfirm mingw-w64-x86_64-python3-gobject" + cd C:/ + git clone https://github.com/tschoonj/GTK-for-Windows-Runtime-Environment-Installer GTK3 + cd GTK3 + git checkout "2022-01-04" + cd .. + echo "WEASYPRINT_DLL_DIRECTORIES=$(pwd)/GTK3/bin" >> $GITHUB_ENV + echo "$(pwd)/GTK3/bin" >> $GITHUB_PATH - name: Install brew and GTK3 (macOS only) if: matrix.os == 'macOS-latest' diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index 1f3686b..220b17a 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -25,8 +25,6 @@ from __future__ import annotations import logging -import os -from pathlib import Path from platform import system from typing import Any @@ -42,18 +40,6 @@ f"{system() if system() != 'Darwin' else 'macOS'}). " ) -if system() == "Windows": - GTK_BIN_PATHS_WIN32: list[Path] = [ - Path(R"C:/tools/msys64/mingw64/bin"), - Path(R"C:/msys64/usr/bin"), - ] - if (environ_path := os.environ.get("WEASYPRINT_DLL_DIRECTORIES")) is not None: - GTK_BIN_PATHS_WIN32.append(Path(environ_path)) - - for path in GTK_BIN_PATHS_WIN32: - if path.exists(): - os.add_dll_directory(path.as_posix()) # type: ignore[attr-defined] - class WEasyPrintNotAvailableError(Exception): """Error raised on Mac OS when attempting to generate PDF report.""" From 376347c75e99cb5e0fc6424b5b9756d24fcf590a Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 02:23:52 +0100 Subject: [PATCH 101/227] Add task-report cli option --- cssfinder/cli.py | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 81b491b..c28f62d 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -24,6 +24,7 @@ from __future__ import annotations import logging +import webbrowser from dataclasses import dataclass import click @@ -152,8 +153,16 @@ def _run(ctx: Ctx, tasks: list[str] | None) -> None: default=False, help="Include PDF report.", ) +@click.option( + "--open", + "--no-open", + "open_", + is_flag=True, + default=False, + help="Automatically open report in web browser.", +) @click.pass_obj -def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool) -> None: +def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. @@ -178,6 +187,8 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool) -> None: try: for report in create_report_from(ctx.project_path, task, include_report_types): report.save_default() + if open_: + webbrowser.open(url=f"file:///{report.default_dest.as_posix()}") except AmbiguousTaskKeyError as exc: logging.critical(exc.args[0]) From e314b523e9b6d95927e22be417436bbc43981ca8 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 02:24:09 +0100 Subject: [PATCH 102/227] Add cli docs --- README.md | 74 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 74 insertions(+) diff --git a/README.md b/README.md index 9672693..43a0572 100644 --- a/README.md +++ b/README.md @@ -191,3 +191,77 @@ Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): ``` snakeviz "#examples_profile_5qubits_prof.prof" ``` + +## Command Line Interface + +The `CSSFinder` is a script that finds the closest separable states. The script +offers a command-line interface that allows you to execute different tasks +related to your CSSFinder project. This documentation will provide a summary of +the commands and options available. + +Once you have installed CSSFinder, you can use it from the command line: + +`cssfinder [OPTIONS] COMMAND [ARGS]... ` + +You can run `cssfinder` without any arguments to display a help message. + +## Options + +The following options are available: + +- `-v`, `--verbose`: increases the verbosity of logging messages. You can use + `-v` up to `-vvv` to increase the verbosity level. +- `--debug`: enables debug mode. +- `-V`, `--version`: shows the version number of CSSFinder and exits. + +## Commands + +The following commands are available: + +### project + +This command allows you to interact with a CSSFinder project. You need to +provide the path to your project as an argument. + +#### run + +This command runs all tasks in a CSSFinder project. + +`cssfinder project run [OPTIONS] ` + +##### Options + +- `-t`, `--tasks`: run specific tasks from the project. You can specify + multiple tasks by using this option multiple times. + +#### task-report + +This command generates a short report for a single task in a CSSFinder project. + +`cssfinder project task-report TASK [OPTIONS] ` + +##### Arguments + +- `TASK`: the name of the task to generate the report for. + +##### Options + +- `--html`, `--no-html`: include or exclude an HTML report in the generated + report. +- `--pdf`, `--no-pdf`: include or exclude a PDF report in the generated report. + +- `--open`, `--no-open`: automatically open report in web browser. + +## Examples + +Here are some examples of how to use CSSFinder from the command line: + +`cssfinder -vvv project ./examples/5qubits/ run` + +This will run all tasks in the specified project and increase the verbosity +level of logging messages to the maximum (debug). + +`cssfinder project ./examples/5qubits/ task-report main --html` + +This will generate an HTML report for the `my_task` task in the specified +project. From bce9cad669630de04b1a23b21b6e57e66fe8dde2 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 02:25:04 +0100 Subject: [PATCH 103/227] Disable PDF reports tests on win32 --- .github/workflows/reports_tests.yaml | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 726432b..1fd6059 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -64,17 +64,6 @@ jobs: if: matrix.os == 'windows-latest' || matrix.os == 'macOS-latest' run: poetry run poe test-reports --pdf-expect-fail - - name: Download and extract GTK3 (Windows only) - if: matrix.os == 'windows-latest' - run: | - cd C:/ - git clone https://github.com/tschoonj/GTK-for-Windows-Runtime-Environment-Installer GTK3 - cd GTK3 - git checkout "2022-01-04" - cd .. - echo "WEASYPRINT_DLL_DIRECTORIES=$(pwd)/GTK3/bin" >> $GITHUB_ENV - echo "$(pwd)/GTK3/bin" >> $GITHUB_PATH - - name: Install brew and GTK3 (macOS only) if: matrix.os == 'macOS-latest' run: | @@ -83,4 +72,5 @@ jobs: brew install gtk+3 - name: Run reports tests + if: matrix.os != 'windows-latest' run: poetry run poe test-reports From ece3f8a844e0786067e52788d5ffadcc9dc0a538 Mon Sep 17 00:00:00 2001 From: argmaster Date: Mon, 13 Mar 2023 20:25:10 +0100 Subject: [PATCH 104/227] Fix type error caused by default_dest being used without checking it is not None --- cssfinder/cli.py | 3 ++- cssfinder/reports/renderer.py | 14 ++++++++++++-- test/test_reports/base.py | 2 +- 3 files changed, 15 insertions(+), 4 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index c28f62d..64108ca 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -188,7 +188,8 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> for report in create_report_from(ctx.project_path, task, include_report_types): report.save_default() if open_: - webbrowser.open(url=f"file:///{report.default_dest.as_posix()}") + report.get_default_dest() + webbrowser.open(url=report.get_default_dest().as_uri()) except AmbiguousTaskKeyError as exc: logging.critical(exc.args[0]) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index 7afdd84..0b49b4d 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -28,11 +28,10 @@ from collections import OrderedDict from dataclasses import dataclass from enum import Enum +from pathlib import Path from typing import TYPE_CHECKING, Optional if TYPE_CHECKING: - from pathlib import Path - from cssfinder.cssfproject import Task from cssfinder.reports.math import SlopeProperties from cssfinder.reports.plotting import Plot @@ -46,6 +45,10 @@ class ReportType(Enum): ARCHIVE = "zip" TXT = "txt" + def get_file_name(self) -> str: + """Return default file name for specific type of report.""" + return f"report.{self.value}" + class Renderer(ABC): """Base class for creating report renderers.""" @@ -111,6 +114,13 @@ class Report: report_type: ReportType default_dest: Optional[Path] = None + def get_default_dest(self) -> Path: + """Return path to default destination of report file.""" + if self.default_dest is not None: + return self.default_dest + + return Path.cwd() / self.report_type.get_file_name() + def save_default(self) -> None: """Save file to default destination.""" if self.default_dest is None: diff --git a/test/test_reports/base.py b/test/test_reports/base.py index ae24249..cb7eaf5 100644 --- a/test/test_reports/base.py +++ b/test/test_reports/base.py @@ -48,7 +48,7 @@ def generate_report(self, report_type: ReportType) -> None: def get_report_path(self, report_type: ReportType) -> Path: """Find report file.""" - return self.get_output_directory() / f"report.{report_type.name.lower()}" + return self.get_output_directory() / report_type.get_file_name() def delete_report(self, report_type: ReportType) -> None: """Delete report file.""" From ed72010866b58ce66f6aa88952dd35f6a5c49bd2 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 00:09:47 +0100 Subject: [PATCH 105/227] Redesign project, task and task_name propagation within project object --- cssfinder/cssfproject.py | 311 +++++++++++++----- .../profiling/5qubits_prof/cssfproject.py | 3 +- 2 files changed, 233 insertions(+), 81 deletions(-) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index efae461..db5dae9 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -51,15 +51,14 @@ class CSSFProject(CommonBaseModel): tasks: Dict[str, Task] """List of tasks within project which can be executed.""" - _file: Optional[Path] = None - """Path to loaded project file.""" - - _is_evaluated: bool = False + _project_path: Path + """Path to cssfproject.json file.""" def __init__( self, meta: Meta, tasks: list[Task] | dict[str, Task], + project_path: Path, *_: Any, **_k: Any, ) -> None: @@ -69,6 +68,8 @@ def __init__( """ super().__init__(meta=meta, tasks=tasks) + self._project_path = project_path + self.bind() @validator("tasks", pre=True, always=True) @classmethod @@ -91,38 +92,41 @@ def _validate_tasks( return {str(i): t for i, t in enumerate(value)} - def eval_dynamic(self) -> None: - """Evaluate dynamic path expressions.""" - if self._is_evaluated: - return + @validator("file_path", pre=True, always=True) + @classmethod + def _validate_file_path(cls, value: str | Path) -> Path: + if not isinstance(value, Path): + file_path = Path(value) + return file_path.expanduser().resolve() - for task_name, task in self.tasks.items(): - task.eval_dynamic(self, task_name, task) + assert isinstance(value, Path) + file_path = value.expanduser().resolve() + + return file_path - self._is_evaluated = True + def bind(self) -> None: + """Bind fields to this CSSFProject object.""" + self.meta.bind(self) - def set_file_path(self, file: Path) -> None: - """Set `cssfproject.json` file path.""" - self._file = file.expanduser().resolve() + for task_name, task in self.tasks.items(): + task.bind(self, task_name) @property - def file(self) -> Path: + def project_file(self) -> Path: """Path to `cssfproject.json` file.""" - if self._file is None: - return Path.cwd() / "cssfproject.json" - return self._file + if self._project_path.name == "cssfinder.json": + return self._project_path + return self._project_path / "cssfproject.json" @property - def directory(self) -> Path: + def project_directory(self) -> Path: """Path to directory containing `cssfproject.json` file.""" - if self._file is None: - return Path.cwd() - return self._file.parent + return self.project_file.parent @property - def output(self) -> Path: + def project_output_directory(self) -> Path: """Path to output directory for this project.""" - directory = self.directory / "output" + directory = self.project_directory / "output" directory.mkdir(0o764, parents=True, exist_ok=True) return directory @@ -178,9 +182,6 @@ def load_project(cls, file_or_directory: str | Path) -> Self: raise InvalidCSSFProjectContentError(content) project = cls(**content) - project.set_file_path(file_path) - project.eval_dynamic() - return project def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: @@ -233,7 +234,62 @@ class ProjectFileNotFoundError(FileNotFoundError): """Raised when project file can't be found in expected place.""" -class Meta(CommonBaseModel): +class _ProjectFieldMixin: + """Mixin class for CSSFProject CommonBaseModel based fields.""" + + _project: Optional[CSSFProject] = None + """Reference to project object.""" + + @property + def project(self) -> CSSFProject: + """Get project owning this task.""" + if self._project is None: + raise NotBoundToProjectError(self, "Access to 'project' property.") + return self._project + + @property + def project_file(self) -> Path: + """Path to `cssfproject.json` file.""" + if self._project is None: + raise NotBoundToProjectError(self, "Access to 'project_file' property.") + return self.project.project_file + + @property + def project_directory(self) -> Path: + """Path to directory containing `cssfproject.json` file.""" + if self._project is None: + raise NotBoundToProjectError( + self, "Access to 'project_directory' property." + ) + return self.project.project_directory + + @property + def project_output_directory(self) -> Path: + """Path to output directory for this project.""" + if self._project is None: + raise NotBoundToProjectError( + self, "Access to 'project_output_directory' property." + ) + return self.project.project_output_directory + + def bind(self, project: CSSFProject) -> None: + """Bind object to specific CSSFProject.""" + self._project = project + + +class NotBoundToProjectError(Exception): + """Raised when unbound object is used in context requiring it to be bound to + CSSFProject instance. + """ + + def __init__(self, ob: Any, context_msg: str) -> None: + super().__init__( + f"Attempted to use unbound object {ob} in context requiring it to be " + f"bound. ({context_msg})" + ) + + +class Meta(CommonBaseModel, _ProjectFieldMixin): """Project meta information.""" author: str @@ -262,46 +318,81 @@ class SemVerStr(ConstrainedStr): ) -class Task(CommonBaseModel): - """Container representing CSSFinder task with some algorithm.""" +class NotBoundToTaskError(NotBoundToProjectError): + """Raised when unbound object is used in context requiring it to be bound to Task + instance. + """ - gilbert: Optional[GilbertCfg] = Field(default=None) - """Configuration of gilbert algorithm.""" - _output: Path = Field(default=Path.cwd()) - """Path default output directory.""" +class _TaskMixin(_ProjectFieldMixin): + """Mixin specifying binding interface for Task object.""" - _task_name: str = Field(default="") + _name: Optional[str] = None """Name of task assigned to it in project.""" - _project: CSSFProject = Field(default="") - """Reference to project object.""" - @property - def output(self) -> Path: + def task_output_directory(self) -> Path: """Path to output directory of task.""" - return self._output + if self._name is None: + raise NotBoundToTaskError( + self, "Access to 'task_output_directory' property." + ) + return self.project.project_output_directory / self.task_name @property - def name(self) -> str: + def task_name(self) -> str: """Name of this task in project.""" - return self._task_name + if self._name is None: + raise NotBoundToTaskError(self, "Access to 'task_name' property.") + return self._name - @property - def project(self) -> CSSFProject: - """Get project owning this task.""" - return self._project + def bind( + self, + project: CSSFProject, + task_name: Optional[str] = None, + ) -> None: + """Bind object to specific Task.""" + super().bind(project) + self._name = task_name - def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: - """Evaluate dynamic path expressions.""" + +class Task(CommonBaseModel, _TaskMixin): + """Container representing CSSFinder task with some algorithm.""" + + gilbert: Optional[GilbertCfg] = Field(default=None) + """Configuration of gilbert algorithm.""" + + def bind(self, project: CSSFProject, task_name: Optional[str] = None) -> None: + """Bind task to specific CSSFProject instance.""" + super().bind(project, task_name) if self.gilbert is not None: - self.gilbert.eval_dynamic(project, task_name, task) - self._output = project.output / task_name - self._task_name = task_name - self._project = project + self.gilbert.bind(project, task_name, self) + +class _TaskFieldMixin(_TaskMixin): + """Mixin specifying binding interface for Task field.""" -class GilbertCfg(CommonBaseModel): + _task: Optional[Task] = None + + @property + def task(self) -> Task: + """Name of this task in project.""" + if self._task is None: + raise NotBoundToTaskError(self, "Access to 'task' property.") + return self._task + + def bind( + self, + project: CSSFProject, + task_name: Optional[str] = None, + task: Optional[Task] = None, + ) -> None: + """Evaluate dynamic fields of CSSFProject element.""" + super().bind(project, task_name) + self._task = task + + +class GilbertCfg(CommonBaseModel, _TaskFieldMixin): """Gilbert algorithm configuration container class.""" mode: AlgoMode @@ -314,7 +405,7 @@ class GilbertCfg(CommonBaseModel): """ - state: Union[State, str, Path] + state: Union[State, str] """Path to file containing initial state matrix.""" runtime: RuntimeCfg @@ -323,6 +414,14 @@ class GilbertCfg(CommonBaseModel): resources: Optional[Resources] = Field(default=None) """Additional resources which may be used by algorithm.""" + @validator("state", always=True) + @classmethod + def _validate_state(cls, value: str | State) -> State: + if not isinstance(value, State): + return State(file=value) + + return value + def get_backend(self) -> BackendCfg: """Return resources object.""" if self.backend is None: @@ -335,16 +434,18 @@ def get_resources(self) -> Resources: self.resources = Resources() return self.resources - def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: + def bind( + self, + project: CSSFProject, + task_name: Optional[str] = None, + task: Optional[Task] = None, + ) -> None: """Evaluate dynamic path expressions.""" - if isinstance(self.state, str): - self.state = State(file=self.state) - - elif isinstance(self.state, Path): - self.state = State(file=self.state.expanduser().resolve().as_posix()) + super().bind(project, task_name, task) + assert isinstance(self.state, State) - self.state.eval_dynamic(project, task_name, task) - self.get_resources().eval_dynamic(project, task_name, task) + self.state.bind(project, task_name, task) + self.get_resources().bind(project, task_name, task) def get_state(self) -> State: """Return initial state information.""" @@ -406,7 +507,7 @@ class Precision(CaseInsensitiveEnum): # pylint: enable=invalid-name -class State(CommonBaseModel): +class State(CommonBaseModel, _TaskFieldMixin): """State configuration.""" file: str @@ -426,9 +527,28 @@ class State(CommonBaseModel): """ - def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: - """Evaluate dynamic path expressions.""" - self.file = self.file.format(project=project, task_name=task_name, task=task) + def bind( + self, + project: CSSFProject, + task_name: Optional[str] = None, + task: Optional[Task] = None, + ) -> None: + """Evaluate dynamic path expressions. + + Path expands user (~) and is resolved only when correctly bound to project. + + """ + super().bind(project, task_name, task) + + if task_name is None or task is None: + return + + self.file = ( + Path(self.file.format(project=project, task_name=task_name, task=task)) + .expanduser() + .resolve() + .as_posix() + ) class RuntimeCfg(CommonBaseModel): @@ -465,30 +585,61 @@ class RuntimeCfg(CommonBaseModel): """ -class Resources(CommonBaseModel): +class Resources(CommonBaseModel, _TaskFieldMixin): """Project resources.""" - symmetries: Optional[List[str]] = Field(default=None) + symmetries: Optional[List[List[str]]] = Field(default=None) """List of paths to files containing symmetry matrices.""" projection: Optional[str] = Field(default=None) """Path to file containing projection matrix.""" - def eval_dynamic(self, project: CSSFProject, task_name: str, task: Task) -> None: - """Evaluate dynamic path expressions.""" + def bind( + self, + project: CSSFProject, + task_name: Optional[str] = None, + task: Optional[Task] = None, + ) -> None: + """Evaluate dynamic path expressions. + + Paths expands user (~) and are resolved only when correctly bound to project. + + """ + super().bind(project, task_name, task) + + if task_name is None or task is None: + return + if self.symmetries is not None: - for i, sym in enumerate(self.symmetries): - self.symmetries[i] = sym.format( - project=project, - task_name=task_name, - task=task, - ) + self.symmetries = [ + [ + Path( + sym.format( + project=project, + task_name=task_name, + task=task, + ) + ) + .expanduser() + .resolve() + .as_posix() + for sym in row + ] + for row in self.symmetries + ] if self.projection is not None: - self.projection = self.projection.format( - project=project, - task_name=task_name, - task=task, + self.projection = ( + Path( + self.projection.format( + project=project, + task_name=task_name, + task=task, + ) + ) + .expanduser() + .resolve() + .as_posix() ) diff --git a/examples/profiling/5qubits_prof/cssfproject.py b/examples/profiling/5qubits_prof/cssfproject.py index 38983d8..338524d 100644 --- a/examples/profiling/5qubits_prof/cssfproject.py +++ b/examples/profiling/5qubits_prof/cssfproject.py @@ -78,7 +78,8 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, + project_path=Path("examples/profiling/5qubits_prof/cssfproject.py"), ) -project.set_file_path(Path("examples/profiling/5qubits_prof/cssfproject.py")) + run_project(project) From 9703c5db1b83256fe0381da339a3d730bfff97a1 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 02:20:08 +0100 Subject: [PATCH 106/227] Refactor file IO approach in Gilbert algorithm --- cssfinder/algorithm/backend/__init__.py | 2 +- cssfinder/algorithm/backend/base.py | 18 +- cssfinder/algorithm/backend/numpy/base.py | 33 ++- cssfinder/algorithm/gilbert.py | 135 ++++++----- cssfinder/algorithm/mode_util.py | 236 +++++++++++++++++++ cssfinder/api.py | 54 +++-- cssfinder/cssfproject.py | 103 +++++--- cssfinder/hooks.py | 78 ------- cssfinder/io/asset_loader.py | 272 ---------------------- cssfinder/io/gilbert_io.py | 179 ++++++++++++++ cssfinder/io/matrix.py | 110 +++++---- cssfinder/io/output_loader.py | 75 ------ cssfinder/reports/html.py | 2 +- cssfinder/reports/manager.py | 5 +- cssfinder/reports/pdf.py | 2 +- cssfinder/reports/renderer.py | 4 +- 16 files changed, 681 insertions(+), 627 deletions(-) create mode 100644 cssfinder/algorithm/mode_util.py delete mode 100644 cssfinder/hooks.py delete mode 100644 cssfinder/io/asset_loader.py create mode 100644 cssfinder/io/gilbert_io.py delete mode 100644 cssfinder/io/output_loader.py diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 8441667..9b8549c 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -36,7 +36,7 @@ from cssfinder.algorithm.backend.base import BackendBase -def new(backend: Backend, precision: Precision) -> type[BackendBase]: +def select(backend: Backend, precision: Precision) -> type[BackendBase]: """Select one of the backends with fixed precision.""" if backend == Backend.NumPy: if precision == Precision.DOUBLE: diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index 4cb7333..e0fd705 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -33,7 +33,6 @@ import numpy.typing as npt from cssfinder.cssfproject import AlgoMode, Backend, Precision - from cssfinder.io.asset_loader import State BackendT = TypeVar("BackendT", bound="BackendBase") @@ -43,31 +42,32 @@ class BackendBase: backend_index: dict[tuple[Backend, Precision], type[BackendBase]] = {} - def __init__( + def __init__( # noqa: PLR0913 self, - initial: State, + initial: npt.NDArray[np.complex128], + depth: int, + quantity: int, mode: AlgoMode, visibility: float, *, is_debug: bool = False, ) -> None: + self.depth = depth + self.quantity = quantity self.initial = initial self.visibility = visibility self.mode = mode self.is_debug = is_debug - @property - def state(self) -> npt.NDArray[np.complex128]: + def get_state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" raise NotImplementedError - @property - def corrections(self) -> list[tuple[int, int, float]]: + def get_corrections(self) -> list[tuple[int, int, float]]: """Return list of all corrections found during optimization.""" raise NotImplementedError - @property - def corrections_count(self) -> int: + def get_corrections_count(self) -> int: """Return number of all corrections found during optimization.""" raise NotImplementedError diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 1fbb618..610845e 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -37,7 +37,6 @@ if TYPE_CHECKING: from cssfinder.algorithm.backend.numpy.impl import Implementation - from cssfinder.io.asset_loader import State PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) @@ -56,15 +55,17 @@ class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): primary_t: type[PRIMARY] secondary_t: type[SECONDARY_co] - def __init__( + def __init__( # noqa: PLR0913 self, - initial: State, + initial: npt.NDArray[np.complex128], + depth: int, + quantity: int, mode: AlgoMode, visibility: float, *, is_debug: bool = False, ) -> None: - super().__init__(initial, mode, visibility, is_debug=is_debug) + super().__init__(initial, depth, quantity, mode, visibility, is_debug=is_debug) self._visibility = self._create_visibility_matrix() self._intermediate = self._create_intermediate_state() @@ -92,7 +93,6 @@ def __init__( def jit(self) -> None: """JIT compile performance critical parts of backend with numba.""" - return _update_state = jit( # type: ignore[assignment] forceobj=True, cache=True, @@ -110,12 +110,12 @@ def jit(self) -> None: self.run_epoch = MethodType(run_epoch, self) # type: ignore[assignment] def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: - vis_state = self.visibility * self.initial.state + vis_state = self.visibility * self.initial inv_vis_ident = (1 - self.visibility) * np.identity( - len(self.initial.state), + len(self.initial), dtype=np.complex128, ) - return (vis_state + inv_vis_ident / len(self.initial.state)).astype( + return (vis_state + inv_vis_ident / len(self.initial)).astype( self.primary_t, ) @@ -124,25 +124,22 @@ def _create_intermediate_state(self) -> npt.NDArray[PRIMARY]: np.fill_diagonal(intermediate, self._visibility.diagonal()) return intermediate.astype(self.primary_t) - @property - def state(self) -> npt.NDArray[np.complex128]: + def get_state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" return self._intermediate.copy().astype(np.complex128) - @property - def corrections(self) -> list[tuple[int, int, float]]: + def get_corrections(self) -> list[tuple[int, int, float]]: """Return list of all corrections found during optimization.""" return self._corrections.copy() - @property - def corrections_count(self) -> int: + def get_corrections_count(self) -> int: """Return number of all corrections found during optimization.""" return len(self._corrections) def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" - depth = self.initial.depth - quantity = self.initial.quantity + depth = self.depth + quantity = self.quantity epochs = 20 * depth * depth * quantity for iteration_index in range(iterations): @@ -171,8 +168,8 @@ def _update_state( # noqa: PLR0913 epochs: int, iteration_index: int, ) -> None: - depth = self.initial.depth - quantity = self.initial.quantity + depth = self.depth + quantity = self.quantity if self.mode == AlgoMode.FSnQd: alternative_state = self.impl.optimize_d_fs( diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 1bfe45e..5ad3a1b 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -25,7 +25,7 @@ import logging from time import perf_counter -from typing import TYPE_CHECKING, Callable +from typing import TYPE_CHECKING, Iterable, Optional from cssfinder.algorithm import backend as _backend @@ -34,7 +34,6 @@ import numpy.typing as npt from cssfinder.cssfproject import AlgoMode, Backend, Precision - from cssfinder.io.asset_loader import State class Gilbert: @@ -42,109 +41,119 @@ class Gilbert: def __init__( # noqa: PLR0913 self, - initial: State, + initial: npt.NDArray[np.complex128], + depth: int, + quantity: int, mode: AlgoMode, backend: Backend, precision: Precision, visibility: float, + symmetries: list[list[npt.NDArray[np.complex128]]], + projection: Optional[npt.NDArray[np.complex128]], *, is_debug: bool = False, ) -> None: self.initial = initial + self.depth = depth + self.quantity = quantity + self.mode = mode self.precision = precision self.visibility = visibility + + self.symmetries = symmetries + self.projection = projection + self.is_debug = is_debug - backend_type = _backend.new(backend, self.precision) + backend_type = _backend.select(backend, self.precision) self.backend = backend_type( self.initial, + self.depth, + self.quantity, self.mode, self.visibility, is_debug=self.is_debug, ) - self._state: npt.NDArray[np.complex128] | None = None - self._corrections: list[tuple[int, int, float]] | None = None - def run( self, - epochs: int, - iterations: int, + max_epochs: int, + iterations_per_epoch: int, max_corrections: int, - *, - save_state_hook: Callable[[npt.NDArray[np.complex128]], None], - save_corrections_hook: Callable[[list[tuple[int, int, float]]], None], - ) -> None: - """Run epochs of iterations each, or up to max_corrections found.""" + ) -> Iterable[int]: + """Run a specified number of epochs with a given number of iterations per epoch + or until a certain amount of corrections is found. + + Parameters + ---------- + max_epochs : int + The number of epochs to run. + iterations_per_epoch : int + The number of iterations to run per epoch. Within epoch, no stop conditions + are checked, therefore number of corrections can exceed expected threshold. + max_corrections : int + The maximum number of corrections allowed. + + Yields + ------ + int + An iterator over the epoch indices, up to the point where the maximum + number of expected corrections is reached. + + Notes + ----- + This method runs a certain number of epochs with a given number of iterations + per epoch on a backend. It will yield the epoch index at each epoch iteration + while running, and will stop if and when the number of corrections found by the + backend exceeds the specified `max_corrections` or after performing number of + epochs specified with `max_epochs`. + + """ start = perf_counter() - total_iterations = epochs * iterations - - for epoch_index in range(epochs): - logging.info( - "Executing epoch %r / %r (%.2f) - corrections: %r best: %r", - epoch_index + 1, - epochs, - ((epoch_index + 1) / epochs) * 100, - self.backend.corrections_count, - self.backend.corrections[-1][2] - if self.backend.corrections_count > 0 - else None, - ) + total_iterations = max_epochs * iterations_per_epoch + epoch_index = 0 + + for epoch_index in range(max_epochs): # Run N iterations of algorithm without checking stop conditions. - self.backend.run_epoch(iterations, epoch_index) - - self._state = self.backend.state - self._corrections = self.backend.corrections - - try: - save_state_hook(self._state) - except Exception as exc: # noqa: BLE001 - logging.critical("Exception occurred within save_state_hook() call.") - raise SaveStateHookError from exc - - try: - save_corrections_hook(self._corrections) - except Exception as exc: # noqa: BLE001 - logging.critical( - "Exception occurred within save_corrections_hook() call.", - ) - raise SaveCorrectionsHookError from exc + self.backend.run_epoch(iterations_per_epoch, epoch_index) - iterations_executed = (epoch_index + 1) * iterations + iterations_executed = (epoch_index + 1) * iterations_per_epoch logging.debug( "Executed %r iterations, total %r / %r (%.2f)", - iterations, + iterations_per_epoch, iterations_executed, total_iterations, (iterations_executed / total_iterations) * 100, ) # Check if we already reached expected number of corrections - if self.backend.corrections_count >= max_corrections: + if self.backend.get_corrections_count() >= max_corrections: logging.info( "Reached expected maximal number of corrections %r", max_corrections, ) break + yield epoch_index + end = perf_counter() logging.info("Elapsed time: %r.", end - start) - @property - def state(self) -> npt.NDArray[np.complex128]: - """Returns correction from saturated algorithm.""" - if self._state is None: - error_message = "Run algorithm first, to obtain state!" - raise AlgorithmNotSaturatedError(error_message) - return self._state - - @property - def corrections(self) -> list[tuple[int, int, float]]: - """Returns correction from saturated algorithm.""" - if self._corrections is None: - error_message = "Run algorithm first to obtain corrections!" - raise AlgorithmNotSaturatedError(error_message) - return self._corrections + # Possibly trigger user defined code before ending execution. + yield epoch_index + return + + def get_state(self) -> npt.NDArray[np.complex128]: + """Return current system state with all optimizations applied.""" + return self.backend.get_state() + + def get_corrections(self) -> list[tuple[int, int, float]]: + """Return list of all corrections found during optimization.""" + return self.backend.get_corrections() + + def get_corrections_count(self) -> int: + """Return number of all corrections found during optimization.""" + return self.backend.get_corrections_count() class AlgorithmError(Exception): diff --git a/cssfinder/algorithm/mode_util.py b/cssfinder/algorithm/mode_util.py new file mode 100644 index 0000000..09cf206 --- /dev/null +++ b/cssfinder/algorithm/mode_util.py @@ -0,0 +1,236 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Gilbert modes related tools.""" + + +from __future__ import annotations + +import logging +import math +from abc import ABC, abstractmethod +from dataclasses import asdict, dataclass +from typing import TYPE_CHECKING + +from cssfinder.constants import PRIMES +from cssfinder.cssfproject import AlgoMode + +if TYPE_CHECKING: + import numpy as np + import numpy.typing as npt + + +@dataclass +class Dimensions: + """Container for system dimensions.""" + + depth: int + """Depth of system, ie. + + number of dimensions in qu(D)it. (d) + + """ + + quantity: int + """Quantity of systems. + + ie. number of qu(D)its in state. (n) + + """ + + def unpack(self) -> dict[str, int]: + """Convert to dictionary.""" + return asdict(self) + + +class ModeUtil(ABC): + """Base class for implementing mode specific utilities eg. + + shape deduction. + + """ + + @staticmethod + def new(mode: AlgoMode) -> ModeUtil: + """Create new ModeUtil subclass instance. + + Parameters + ---------- + mode : AlgoMode + Util set selector. + + Returns + ------- + ModeUtil + Instance of subclass of ModeUtil. + + Raises + ------ + NotImplementedError + For unsupported AlgoModes and incorrect input. + + """ + if mode == AlgoMode.FSnQd: + return FSnQdUtil() + + if mode == AlgoMode.SBiPa: + return SBiPaUtil() + + msg = f"Unsupported mode {mode.name}" + raise NotImplementedError(msg) + + def get_dimensions(self, state: npt.NDArray[np.complex128]) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + state : int + State matrix to detect dimensions for. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + return self.detect_depth_and_quantity(len(state)) + + @abstractmethod + def detect_depth_and_quantity(self, total: int) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Dimension along one of axes. Matrix is expected to be square. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + + +class FSnQdUtil(ModeUtil): + """FSnQd specific implementation of utilities eg. + + shape deduction. + + """ + + def detect_depth_and_quantity(self, total: int) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Dimension along one of axes. Matrix is expected to be square. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + for depth in PRIMES: + quantity = int(math.log(total, depth)) + + if quantity == int(quantity): + logging.debug( + "Deduced quantity %r and depth %r when given total size %r", + depth, + quantity, + total, + ) + return Dimensions(depth, quantity) + + reason = "prime number range exceeded" + raise UndefinedSystemSizeError(reason) + + +class SBiPaUtil(ModeUtil): + """SBiPa specific implementation of utilities eg. + + shape deduction. + + """ + + def detect_depth_and_quantity(self, total: int) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Dimension along one of axes. Matrix is expected to be square. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + total_sqrt = math.sqrt(total) + floored_total_sqrt = int(total_sqrt) + + if total_sqrt == floored_total_sqrt: + return Dimensions(floored_total_sqrt, floored_total_sqrt) + + for depth in PRIMES: + if total % depth == 0: + quantity = int(total / depth) + logging.debug( + "Deduced quantity %r and depth %r when given total size %r", + depth, + quantity, + total, + ) + return Dimensions(depth, quantity) + + reason = "prime number range exceeded" + raise UndefinedSystemSizeError(reason) + + +class UndefinedSystemSizeError(ValueError): + """Raised when it is not possible to determine system dimensions.""" + + def __init__(self, reason: str) -> None: + super().__init__(f"Couldn't determine size of system: {reason}.") diff --git a/cssfinder/api.py b/cssfinder/api.py index 0d4d2b2..46d42e6 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -26,9 +26,9 @@ from typing import TYPE_CHECKING, Iterable from cssfinder.algorithm.gilbert import Gilbert +from cssfinder.algorithm.mode_util import ModeUtil from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task -from cssfinder.hooks import save_corrections_hook, save_matrix_hook -from cssfinder.io.asset_loader import GilbertAssetLoader +from cssfinder.io.gilbert_io import GilbertIO from cssfinder.reports.manager import ReportManager if TYPE_CHECKING: @@ -61,7 +61,6 @@ def run_project( is_debug: bool = False, ) -> None: """Run all tasks defined in project.""" - project.eval_dynamic() logging.debug("Running project %r", project.meta.name) message = "\n | ".join(project.json(indent=2).split("\n")) @@ -74,38 +73,57 @@ def run_project( def run_task(task: Task, *, is_debug: bool = False) -> None: """Run task until completed.""" if task.gilbert: - run_gilbert(task.gilbert, task.output, is_debug=is_debug) + run_gilbert(task.gilbert, task.task_output_directory, is_debug=is_debug) def run_gilbert( config: GilbertCfg, - task_output_dir: Path, + task_output_directory: Path, *, is_debug: bool = False, ) -> None: """Run Gilbert algorithm part of task.""" - asset_loader = GilbertAssetLoader() - assets = asset_loader.load_assets(config) + asset_io = GilbertIO() - task_output_dir.mkdir(0o764, parents=True, exist_ok=True) + task_output_directory.mkdir(0o764, parents=True, exist_ok=True) + + initial_state = asset_io.load_state(config.get_state().file) + state_dimensions = ModeUtil.new(config.mode).get_dimensions(initial_state) + + symmetries = asset_io.load_symmetries(config.get_resources().symmetries) + projection = asset_io.load_projection(config.get_resources().projection) algorithm = Gilbert( - assets.state, + initial_state, + **state_dimensions.unpack(), mode=config.mode, backend=config.get_backend().name, precision=config.get_backend().precision, visibility=config.runtime.visibility, + symmetries=symmetries, + projection=projection, is_debug=is_debug, ) - algorithm.run( - epochs=config.runtime.max_epochs, - iterations=config.runtime.iters_per_epoch, + + for epoch_index in algorithm.run( + max_epochs=config.runtime.max_epochs, + iterations_per_epoch=config.runtime.iters_per_epoch, max_corrections=config.runtime.max_corrections, - save_state_hook=save_matrix_hook(task_output_dir / "state.mtx"), - save_corrections_hook=save_corrections_hook( - task_output_dir / "corrections.json", - ), - ) + ): + logging.info( + "Executing epoch %r / %r (%.2f) - corrections: %r best: %r", + epoch_index + 1, + config.runtime.max_epochs, + ((epoch_index + 1) / config.runtime.max_epochs) * 100, + algorithm.get_corrections_count(), + algorithm.get_corrections()[-1][2] + if algorithm.get_corrections_count() > 0 + else None, + ) + asset_io.dump_state(algorithm.get_state(), config.output_state_file) + asset_io.dump_corrections( + algorithm.get_corrections(), config.output_corrections_file + ) def create_report_from( @@ -151,7 +169,7 @@ def create_report( tasks = project.select_tasks([task]) if len(tasks) > 1: - matched_tasks_names = [t.name for t in tasks] + matched_tasks_names = [t.task_name for t in tasks] message = ( f"Pattern {task!r} matches more than one task ({len(tasks)}): " f"{matched_tasks_names!r}" diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index db5dae9..5b275aa 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -41,6 +41,8 @@ if TYPE_CHECKING: from typing_extensions import Self +PROJECT_FILE_NAME: str = "cssfproject.json" + class CSSFProject(CommonBaseModel): """CSSFProject file specification.""" @@ -58,7 +60,7 @@ def __init__( self, meta: Meta, tasks: list[Task] | dict[str, Task], - project_path: Path, + project_path: str | Path, *_: Any, **_k: Any, ) -> None: @@ -68,7 +70,12 @@ def __init__( """ super().__init__(meta=meta, tasks=tasks) - self._project_path = project_path + if not isinstance(project_path, Path): + self._project_path = Path(project_path).expanduser().resolve() + + assert isinstance(project_path, Path) + self._project_path = project_path.expanduser().resolve() + self.bind() @validator("tasks", pre=True, always=True) @@ -92,18 +99,6 @@ def _validate_tasks( return {str(i): t for i, t in enumerate(value)} - @validator("file_path", pre=True, always=True) - @classmethod - def _validate_file_path(cls, value: str | Path) -> Path: - if not isinstance(value, Path): - file_path = Path(value) - return file_path.expanduser().resolve() - - assert isinstance(value, Path) - file_path = value.expanduser().resolve() - - return file_path - def bind(self) -> None: """Bind fields to this CSSFProject object.""" self.meta.bind(self) @@ -114,9 +109,10 @@ def bind(self) -> None: @property def project_file(self) -> Path: """Path to `cssfproject.json` file.""" - if self._project_path.name == "cssfinder.json": + if self._project_path.name == PROJECT_FILE_NAME: return self._project_path - return self._project_path / "cssfproject.json" + + return self._project_path / PROJECT_FILE_NAME @property def project_directory(self) -> Path: @@ -157,19 +153,17 @@ def load_project(cls, file_or_directory: str | Path) -> Self: # When points to directory, dir must contain cssfproject.json file if file_or_directory.is_dir(): - file_or_directory /= "cssfproject.json" - file_path = file_or_directory - del file_or_directory + file_or_directory /= PROJECT_FILE_NAME + project_path = file_or_directory else: - file_path = file_or_directory - del file_or_directory + project_path = file_or_directory - logging.debug("Resolved project path to %r", file_path.as_posix()) + logging.debug("Resolved project path to %r", project_path.as_posix()) try: - content = file_path.read_text(encoding="utf-8") + content = project_path.read_text(encoding="utf-8") except FileNotFoundError as exc: - error_message = f"Make sure you path is correct: {file_path!r}" + error_message = f"Make sure you path is correct: {project_path!r}" raise ProjectFileNotFoundError(error_message) from exc try: @@ -181,7 +175,7 @@ def load_project(cls, file_or_directory: str | Path) -> Self: logging.critical("Content of cssfproject.json file is not a dictionary.") raise InvalidCSSFProjectContentError(content) - project = cls(**content) + project = cls(**content, project_path=project_path) return project def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: @@ -307,6 +301,9 @@ class Meta(CommonBaseModel, _ProjectFieldMixin): version: SemVerStr """Version of the project.""" + _project: Optional[CSSFProject] = None + """Reference to project object.""" + class SemVerStr(ConstrainedStr): """Semantic versioning string regex, see https://semver.org/.""" @@ -327,24 +324,34 @@ class NotBoundToTaskError(NotBoundToProjectError): class _TaskMixin(_ProjectFieldMixin): """Mixin specifying binding interface for Task object.""" - _name: Optional[str] = None + _task_name: Optional[str] = None """Name of task assigned to it in project.""" @property def task_output_directory(self) -> Path: """Path to output directory of task.""" - if self._name is None: + if self._task_name is None: raise NotBoundToTaskError( self, "Access to 'task_output_directory' property." ) return self.project.project_output_directory / self.task_name + @property + def output_state_file(self) -> Path: + """Path to output state file.""" + return self.task_output_directory / "state.mtx" + + @property + def output_corrections_file(self) -> Path: + """Path to output corrections file.""" + return self.task_output_directory / "corrections.json" + @property def task_name(self) -> str: """Name of this task in project.""" - if self._name is None: + if self._task_name is None: raise NotBoundToTaskError(self, "Access to 'task_name' property.") - return self._name + return self._task_name def bind( self, @@ -353,7 +360,7 @@ def bind( ) -> None: """Bind object to specific Task.""" super().bind(project) - self._name = task_name + self._task_name = task_name class Task(CommonBaseModel, _TaskMixin): @@ -362,6 +369,12 @@ class Task(CommonBaseModel, _TaskMixin): gilbert: Optional[GilbertCfg] = Field(default=None) """Configuration of gilbert algorithm.""" + _project: Optional[CSSFProject] = None + """Reference to project object.""" + + _task_name: Optional[str] = None + """Name of task assigned to it in project.""" + def bind(self, project: CSSFProject, task_name: Optional[str] = None) -> None: """Bind task to specific CSSFProject instance.""" super().bind(project, task_name) @@ -373,6 +386,7 @@ class _TaskFieldMixin(_TaskMixin): """Mixin specifying binding interface for Task field.""" _task: Optional[Task] = None + """Reference to task object containing this object.""" @property def task(self) -> Task: @@ -414,6 +428,15 @@ class GilbertCfg(CommonBaseModel, _TaskFieldMixin): resources: Optional[Resources] = Field(default=None) """Additional resources which may be used by algorithm.""" + _project: Optional[CSSFProject] = None + """Reference to project object.""" + + _task_name: Optional[str] = None + """Name of task assigned to it in project.""" + + _task: Optional[Task] = None + """Reference to task object containing this object.""" + @validator("state", always=True) @classmethod def _validate_state(cls, value: str | State) -> State: @@ -461,7 +484,7 @@ class AlgoMode(CaseInsensitiveEnum): FSnQd = "FSnQd" """Full separability of n-quDit state.""" - SBiPa = "SBiPi" + SBiPa = "SBiPa" """Separability of a bipartite state.""" G3PaE3qD = "G3PaE3qD" @@ -527,6 +550,15 @@ class State(CommonBaseModel, _TaskFieldMixin): """ + _project: Optional[CSSFProject] = None + """Reference to project object.""" + + _task_name: Optional[str] = None + """Name of task assigned to it in project.""" + + _task: Optional[Task] = None + """Reference to task object containing this object.""" + def bind( self, project: CSSFProject, @@ -594,6 +626,15 @@ class Resources(CommonBaseModel, _TaskFieldMixin): projection: Optional[str] = Field(default=None) """Path to file containing projection matrix.""" + _project: Optional[CSSFProject] = None + """Reference to project object.""" + + _task_name: Optional[str] = None + """Name of task assigned to it in project.""" + + _task: Optional[Task] = None + """Reference to task object containing this object.""" + def bind( self, project: CSSFProject, diff --git a/cssfinder/hooks.py b/cssfinder/hooks.py deleted file mode 100644 index 09e0ed3..0000000 --- a/cssfinder/hooks.py +++ /dev/null @@ -1,78 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -"""Module contains basic hooks which can be used by tasks.""" - -from __future__ import annotations - -import json -import logging -from pathlib import Path -from typing import TYPE_CHECKING, Callable - -from cssfinder.io.matrix import MatrixIO - -if TYPE_CHECKING: - import numpy as np - import numpy.typing as npt - - -def save_matrix_hook( - destination: str | Path, -) -> Callable[[npt.NDArray[np.complex128]], None]: - """Builtin hook for saving state matrix. - - Matrix will be saved every time hook is called. - - """ - destination_path = Path(destination) - mtx_io = MatrixIO.new(destination_path) - - def _save_matrix_hook(matrix: npt.NDArray[np.complex128]) -> None: - logging.debug( - "Saving output state to %r with matrix size %r", - destination_path.as_posix(), - matrix.shape, - ) - mtx_io.dump(matrix) - - return _save_matrix_hook - - -def save_corrections_hook( - destination: str | Path, -) -> Callable[[list[tuple[int, int, float]]], None]: - """Builtin hook for saving corrections array. - - Corrections will be saved every time hook is called. - - """ - destination_path = Path(destination) - - def _save_corrections_hook(corrections: list[tuple[int, int, float]]) -> None: - logging.debug( - "Saving output state to %r with total corrections %r", - destination_path.as_posix(), - len(corrections), - ) - with destination_path.open("w", encoding="utf-8") as file: - json.dump(corrections, file, indent=2) - - return _save_corrections_hook diff --git a/cssfinder/io/asset_loader.py b/cssfinder/io/asset_loader.py deleted file mode 100644 index fd0ea60..0000000 --- a/cssfinder/io/asset_loader.py +++ /dev/null @@ -1,272 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Module contains implementation of asset loader class.""" - -from __future__ import annotations - -import logging -import math -from dataclasses import dataclass -from typing import TYPE_CHECKING, List, Optional - -import numpy as np -import numpy.typing as npt # noqa: TCH002 - -from cssfinder.base_model import CommonBaseModel -from cssfinder.constants import PRIMES -from cssfinder.io.matrix import MatrixIO - -if TYPE_CHECKING: - from cssfinder.cssfproject import GilbertCfg - -NUMBER_OF_DIMENSIONS_IN_MATRIX: int = 2 - - -class GilbertAssets(CommonBaseModel): - """Container class for assets used by gilbert algorithm.""" - - state: State - """Initial state for algorithm.""" - - symmetries: Optional[List[npt.NDArray[np.complex128]]] - """List of symmetries of state.""" - - projection: Optional[npt.NDArray[np.complex128]] - """Projection to apply to state.""" - - -class GilbertAssetLoader: - """Loader of Gilbert algorithm assets.""" - - def load_assets(self, gilbert_cfg: GilbertCfg) -> GilbertAssets: - """Load initial state from file indicated by cssfproject configuration.""" - return GilbertAssets( - state=self._load_state(gilbert_cfg), - symmetries=self._load_symmetries(gilbert_cfg), - projection=self._load_projection(gilbert_cfg), - ) - - def _load_state(self, gilbert_cfg: GilbertCfg) -> State: - state_props = gilbert_cfg.get_state() - state_matrix_file_path = state_props.file - - loader = MatrixIO.new(state_matrix_file_path) - mtx = loader.load().astype(np.complex128) - logging.info( - "Loaded matrix from %r of shape %r", - state_matrix_file_path, - mtx.shape, - ) - - # We are expecting loaded ndarray to be a square matrix, all other numbers of - # dimensions cause crash. - self._check_matrix_shape(mtx) - - total_size = len(mtx) - depth, quantity = state_props.depth, state_props.quantity - - # Depth and quantity are optional and we can determine first matching pair - # of those values based on number of rows in matrix - if depth is None: - old_quantity = quantity - depth, quantity = self._detect_depth_and_quantity(total_size) - - if old_quantity is not None: - logging.warning( - "State quantity (%r) was ignored, as depth is None, quantity of %r \ - was deduced.", - old_quantity, - quantity, - ) - - elif quantity is None: - quantity = self._detect_system_quantity(depth, total_size) - - logging.info( - "Matrix represents system with depth = %r, quantity = %r", - depth, - quantity, - ) - return State(state=mtx, depth=depth, quantity=quantity) - - def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: - """Check if ndarray conforms shape rules.""" - if len(mtx.shape) == NUMBER_OF_DIMENSIONS_IN_MATRIX: - pass - - elif len(mtx.shape) > NUMBER_OF_DIMENSIONS_IN_MATRIX: - logging.critical( - "Expected square matrix but got tensor with shape %r", - mtx.shape, - ) - raise NotExpectedTensorError(mtx) - - elif len(mtx.shape) == 1: - logging.critical( - "Expected square matrix but got vector with shape %r", - mtx.shape, - ) - raise NotExpectedVectorError(mtx) - - elif len(mtx.shape) == 0: - logging.critical("Expected square matrix but got scalar (%r)", mtx) - raise NotExpectedScalarError(mtx) - - else: - raise AssertionError(mtx.shape) - - # Only square matrices are accepted. - x_size, y_size = mtx.shape - if x_size != y_size: - logging.critical("Expected square matrix, but received shape %r", mtx.shape) - raise IncorrectMatrixShapeError(mtx) - - def _detect_depth_and_quantity(self, total: int) -> tuple[int, int]: - """Detect both system depth and system quantity. - - Parameters - ---------- - total : int - Total size of matrix. - - Returns - ------- - tuple[int, int] - Depth, quantity tuple. - - Raises - ------ - ValueError - When depth and quantity can't be determined. - - """ - for depth in PRIMES: - quantity = int(math.log(total, depth)) - - if quantity == int(quantity): - logging.debug( - "Deduced quantity %r and depth %r when given total size %r", - depth, - quantity, - total, - ) - return depth, quantity - - reason = "prime number range exceeded" - raise UndefinedSystemSizeError(reason) - - def _detect_system_quantity(self, depth: int, total: int) -> int: - """Detect system quantity (number of subsystems). - - Parameters - ---------- - depth : int - Depth of each subsystem (d) - total : int - Total size of matrix. - - Returns - ------- - int - Quantity. - - Raises - ------ - ValueError - When quantity can't be determined. - - """ - quantity = int(math.log(total, depth)) - - if quantity == int(quantity): - logging.debug("Deduced quantity %r when given depth of %r", depth, quantity) - return quantity - - error_reason = f"{quantity} != {int(quantity)}" - raise UndefinedSystemSizeError(error_reason) - - def _load_symmetries( - self, - gilbert_cfg: GilbertCfg, # noqa: ARG002 - ) -> list[npt.NDArray[np.complex128]] | None: - """Load matrices describing symmetries of system state.""" - return # type: ignore[return-value] - - def _load_projection( - self, - gilbert_cfg: GilbertCfg, # noqa: ARG002 - ) -> npt.NDArray[np.complex128] | None: - """Load matrix describing projection of system state.""" - return # type: ignore[return-value] - - -@dataclass -class State: - """State matrix and system dimensions.""" - - state: npt.NDArray[np.complex128] - """Path to file containing state matrix.""" - - depth: int - """Depth of system, ie. - - Dimensions in qu(D)it. (d) - - """ - - quantity: int - """Quantity of systems. - - ie. number of qu(D)its in state. (n) - - """ - - -class IncorrectMatrixShapeError(ValueError): - """Raised when matrix has incorrect shape.""" - - def __init__(self, mtx: npt.NDArray[np.complex128]) -> None: - """Store matrix object in `mtx` attribute.""" - super().__init__() - self.mtx = mtx - - -class NotExpectedTensorError(IncorrectMatrixShapeError): - """Raised when got 3+ dimensional tensor instead of matrix.""" - - -class NotExpectedVectorError(IncorrectMatrixShapeError): - """Raised when got vector instead of matrix.""" - - -class NotExpectedScalarError(IncorrectMatrixShapeError): - """Raised when got scalar instead of matrix.""" - - -class UndefinedSystemSizeError(ValueError): - """Raised when it is not possible to determine system dimensions.""" - - def __init__(self, reason: str) -> None: - super().__init__(f"Couldn't determine size of system: {reason}.") - - -GilbertAssets.update_forward_refs() diff --git a/cssfinder/io/gilbert_io.py b/cssfinder/io/gilbert_io.py new file mode 100644 index 0000000..4664a09 --- /dev/null +++ b/cssfinder/io/gilbert_io.py @@ -0,0 +1,179 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Module contains implementation of asset loader class.""" + +from __future__ import annotations + +import json +import logging +from pathlib import Path +from typing import TYPE_CHECKING, Any, Optional, cast + +import numpy as np +import pandas as pd + +from cssfinder.io.matrix import MatrixFormat, MatrixIO + +if TYPE_CHECKING: + import numpy.typing as npt + +NUMBER_OF_DIMENSIONS_IN_MATRIX: int = 2 + + +class GilbertIO: + """Loader of Gilbert algorithm assets.""" + + def __init__( + self, matrix_format: MatrixFormat = MatrixFormat.MATRIX_MARKET + ) -> None: + self.loader = MatrixIO.new(matrix_format) + + def load_state(self, source: str | Path) -> npt.NDArray[np.complex128]: + """Load state matrix from file. + + Parameters + ---------- + source : str | Path + Path to matrix file. + + Returns + ------- + npt.NDArray[np.complex128] + Loaded matrix. Always returns np.complex128. + + """ + mtx = self.loader.load(source).astype(np.complex128) + logging.info( + "Loaded matrix from %r of shape %r", Path(source).as_posix(), mtx.shape + ) + + # We are expecting loaded ndarray to be a square matrix, all other numbers of + # dimensions cause crash. + self._check_matrix_shape(mtx) + + return mtx + + def _check_matrix_shape(self, mtx: npt.NDArray[np.complex128]) -> None: + """Check if ndarray conforms shape rules.""" + if len(mtx.shape) == NUMBER_OF_DIMENSIONS_IN_MATRIX: + pass + + elif len(mtx.shape) > NUMBER_OF_DIMENSIONS_IN_MATRIX: + logging.critical( + "Expected square matrix but got tensor with shape %r", + mtx.shape, + ) + raise NotExpectedTensorError(mtx) + + elif len(mtx.shape) == 1: + logging.critical( + "Expected square matrix but got vector with shape %r", + mtx.shape, + ) + raise NotExpectedVectorError(mtx) + + elif len(mtx.shape) == 0: + logging.critical("Expected square matrix but got scalar (%r)", mtx) + raise NotExpectedScalarError(mtx) + + else: + raise AssertionError(mtx.shape) + + # Only square matrices are accepted. + x_size, y_size = mtx.shape + if x_size != y_size: + logging.critical("Expected square matrix, but received shape %r", mtx.shape) + raise IncorrectMatrixShapeError(mtx) + + def load_symmetries( + self, + symmetries: Optional[list[list[str]]], + ) -> list[list[npt.NDArray[np.complex128]]]: + """Load matrices describing symmetries of system state.""" + if symmetries is None: + return [] + return [ + [self.loader.load(sym).astype(np.complex128) for sym in row] + for row in symmetries + ] + + def load_projection( + self, + projection: Optional[str], + ) -> npt.NDArray[np.complex128] | None: + """Load matrix describing projection of system state.""" + if projection is None: + return None + + return self.loader.load(projection).astype(np.complex128) + + def dump_state(self, state: npt.NDArray[np.complex128], dest: str | Path) -> None: + """Save state to file.""" + return self.loader.dump(state, dest) + + def dump_corrections(self, corrections: Any, dest: str | Path) -> None: + """Save state to file.""" + file_path = Path(dest).with_suffix(".json") + with file_path.open("w", encoding="utf-8") as file: + return json.dump(corrections, file) + + def load_corrections(self, source: Path) -> pd.DataFrame: + """Load corrections from a JSON file and return them as a pandas DataFrame. + + Parameters + ---------- + source : Path + Path to the JSON file containing corrections data. + + Returns + ------- + pd.DataFrame + A DataFrame containing the corrections data, with columns renamed to + "iteration", "index", and "value". + + """ + data_frame: pd.DataFrame = cast(pd.DataFrame, pd.read_json(source)) + + return data_frame.rename( + columns={0: "iteration", 1: "index", 2: "value"}, + ) + + +class IncorrectMatrixShapeError(ValueError): + """Raised when matrix has incorrect shape.""" + + def __init__(self, mtx: npt.NDArray[np.complex128]) -> None: + """Store matrix object in `mtx` attribute.""" + super().__init__() + self.mtx = mtx + + +class NotExpectedTensorError(IncorrectMatrixShapeError): + """Raised when got 3+ dimensional tensor instead of matrix.""" + + +class NotExpectedVectorError(IncorrectMatrixShapeError): + """Raised when got vector instead of matrix.""" + + +class NotExpectedScalarError(IncorrectMatrixShapeError): + """Raised when got scalar instead of matrix.""" diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index e975f89..c21e6a1 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -25,8 +25,9 @@ import logging from abc import ABC, abstractmethod +from enum import Enum from pathlib import Path -from typing import TYPE_CHECKING +from typing import IO, TYPE_CHECKING, ClassVar import numpy as np import scipy.io @@ -37,31 +38,26 @@ import numpy.typing as npt -class MatrixIO(ABC): - """Abstract base class declaring interface of matrix input-output manager.""" +class MatrixFormat(Enum): + """Enumeration of possible supported matrix formats.""" - def __init__(self, file_path: Path) -> None: - """Initialize matrix IO. + MATRIX_MARKET = ".mtx" - Parameters - ---------- - file_path : Path - Path to source/destination file. - """ - self.file_path = file_path +class MatrixIO(ABC): + """Abstract base class declaring interface of matrix input-output manager.""" + + matrix_format: ClassVar[MatrixFormat] @classmethod - def new(cls, file_path: str | Path, file_format: str | None = None) -> MatrixIO: + def new(cls, matrix_format: MatrixFormat) -> MatrixIO: """Create new instance of matrix loader for file format. When format is None, file format is deduced from file extension. Parameters ---------- - file_path : Path + matrix_format : MatrixFormat Path to file containing matrix data. - file_format : Optional[str], optional - File format specifier in form of extension, eg. ".mtx", by default None Returns ------- @@ -69,66 +65,68 @@ def new(cls, file_path: str | Path, file_format: str | None = None) -> MatrixIO: Matrix loader. """ - if isinstance(file_path, str): - file_path = Path(file_path) - - if file_format is None: - file_format = file_path.suffix + io = FORMAT_TO_LOADER[matrix_format]() + logging.debug("Selected matrix IO %r for format %r", io, matrix_format.name) + return io - logging.debug( - "Using file format %r for file %r", - file_format, - file_path.as_posix(), - ) + def load( + self, src: str | Path | IO[bytes] + ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: + """Load matrix from file as numpy array.""" + if isinstance(src, (str, Path)): + with Path(src).open("rb") as file: + return self._load(file) - return FORMAT_TO_LOADER[file_format](file_path) + return self._load(file) @abstractmethod - def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: - """Load matrix from file as numpy array.""" + def _load( + self, src: IO[bytes] + ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: + ... + + def dump( + self, + data: npt.NDArray[np.int64 | np.float64 | np.complex128], + dest: str | Path | IO[bytes], + ) -> None: + """Dump matrix to file from numpy array.""" + if isinstance(dest, (str, Path)): + file_path = Path(dest).with_suffix(self.matrix_format.value) + with file_path.open("wb") as file: + return self._dump(data, file) + + return self._dump(data, file) @abstractmethod - def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None: - """Dump matrix to file from numpy array.""" + def _dump( + self, data: npt.NDArray[np.int64 | np.float64 | np.complex128], dest: IO[bytes] + ) -> None: + ... class MatrixMarketIO(MatrixIO): """MatrixIO implementation for loading MatrixMarket exchange format files.""" - def load(self) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: - """Load the data from MatrixMarket exchange format file. - - Returns - ------- - numpy.ndarray - An array containing the data from the file in MatrixMarket format. + matrix_format: ClassVar[MatrixFormat] = MatrixFormat.MATRIX_MARKET - """ - mtx = scipy.io.mmread(self.file_path.as_posix()) + def _load( + self, dest: IO[bytes] + ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: + mtx = scipy.io.mmread(dest) assert mtx is not None return np.array(mtx) - def dump(self, data: npt.NDArray[np.int64 | np.float64 | np.complex128]) -> None: - """Write data to a MatrixMarket exchange format file. - - Parameters - ---------- - data : numpy.ndarray - An array containing the data to be written to the file. - - Returns - ------- - None - - """ - self.file_path.touch(0o664, exist_ok=True) + def _dump( + self, data: npt.NDArray[np.int64 | np.float64 | np.complex128], dest: IO[bytes] + ) -> None: scipy.io.mmwrite( - self.file_path.as_posix(), + dest, data, comment=f"Created with CSSFinder {cssfinder.__version__}.", ) -FORMAT_TO_LOADER: dict[str, type[MatrixIO]] = { - ".mtx": MatrixMarketIO, +FORMAT_TO_LOADER: dict[MatrixFormat, type[MatrixIO]] = { + MatrixFormat.MATRIX_MARKET: MatrixMarketIO, } diff --git a/cssfinder/io/output_loader.py b/cssfinder/io/output_loader.py deleted file mode 100644 index ef3ace0..0000000 --- a/cssfinder/io/output_loader.py +++ /dev/null @@ -1,75 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -"""Contains class for loading output of Gilbert algorithm.""" - -from __future__ import annotations - -from typing import TYPE_CHECKING, cast - -import numpy as np -import pandas as pd - -from cssfinder.io.matrix import MatrixIO - -if TYPE_CHECKING: - from pathlib import Path - - import numpy.typing as npt - - from cssfinder.cssfproject import Task - - -class GilbertOutputLoader: - """Loader of Gilbert output files.""" - - def load_corrections(self, task: Task) -> pd.DataFrame: - """Load corrections saved from executed task. - - DataFrame object will have 3 columns: "iteration", "index" and "value". - - """ - return self.load_corrections_from(task.output / "corrections.json") - - def load_corrections_from(self, source: Path) -> pd.DataFrame: - """Load corrections from a JSON file and return them as a pandas DataFrame. - - Parameters - ---------- - source : Path - Path to the JSON file containing corrections data. - - Returns - ------- - pd.DataFrame - A DataFrame containing the corrections data, with columns renamed to - "iteration", "index", and "value". - - """ - data_frame: pd.DataFrame = cast(pd.DataFrame, pd.read_json(source)) - - return data_frame.rename( - columns={0: "iteration", 1: "index", 2: "value"}, - ) - - def load_state_from(self, source: Path) -> npt.NDArray[np.complex128]: - """Load state matrix from specified location.""" - loader = MatrixIO.new(source) - return loader.load().astype(np.complex128) diff --git a/cssfinder/reports/html.py b/cssfinder/reports/html.py index 4680e05..7264d5a 100644 --- a/cssfinder/reports/html.py +++ b/cssfinder/reports/html.py @@ -50,5 +50,5 @@ def render(self) -> Report: return Report( template.render(ctx=self.ctx).encode("utf-8"), ReportType.HTML, - self.ctx.task.output / "report.html", + self.ctx.task.task_output_directory / "report.html", ) diff --git a/cssfinder/reports/manager.py b/cssfinder/reports/manager.py index be1139f..8d8a2db 100644 --- a/cssfinder/reports/manager.py +++ b/cssfinder/reports/manager.py @@ -26,7 +26,7 @@ from dataclasses import dataclass from typing import TYPE_CHECKING, Any, ClassVar, Type -from cssfinder.io.output_loader import GilbertOutputLoader +from cssfinder.io.gilbert_io import GilbertIO from cssfinder.reports.plotting import Plot, Plotter from cssfinder.reports.renderer import Renderer, Report, ReportType @@ -53,6 +53,7 @@ def __init__(self, project: CSSFProject, task: Task) -> None: """ self.project = project self.task = task + self.loader = GilbertIO() def prepare(self) -> PreparedReportManager: """Prepare the data for generating a report. @@ -67,7 +68,7 @@ def prepare(self) -> PreparedReportManager: generating a report. """ - corrections = GilbertOutputLoader().load_corrections(self.task) + corrections = self.loader.load_corrections(self.task.output_corrections_file) plots = OrderedDict() diff --git a/cssfinder/reports/pdf.py b/cssfinder/reports/pdf.py index 220b17a..028e524 100644 --- a/cssfinder/reports/pdf.py +++ b/cssfinder/reports/pdf.py @@ -74,5 +74,5 @@ def render(self) -> Report: return Report( weasyprint.HTML(string=report.content.decode("utf-8")).write_pdf(), ReportType.PDF, - self.ctx.task.output / "report.pdf", + self.ctx.task.task_output_directory / "report.pdf", ) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index 0b49b4d..2ed4340 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -79,7 +79,7 @@ class Ctx: @property def title(self) -> str: """Document title.""" - return f"Report {self.task.output.parent.parent.name} / {self.task.name}" + return f"Report {self.task.project_directory.name} / {self.task.task_name}" @property def meta(self) -> OrderedDict: @@ -87,7 +87,7 @@ def meta(self) -> OrderedDict: return OrderedDict( { "Project name": self.task.project.meta.name, - "Task name": self.task.name, + "Task name": self.task.task_name, "Author": self.task.project.meta.author, "Email": self.task.project.meta.email, "Description": self.task.project.meta.description, From 83635fd9ffcf09c3a6dd7e760b6d5d55cc8b7e46 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 02:27:13 +0100 Subject: [PATCH 107/227] Adapt tests and examples to API changes --- examples/5qubits/cssfproject.json | 2 +- examples/5qubits/cssfproject.py | 1 + examples/GHZ3/cssfproject.json | 26 +++++++++++-------- examples/GHZ4/cssfproject.json | 2 +- examples/proj/cssfproject.json | 8 +++--- test/test_system/base.py | 10 +++---- .../{test_sbipi.py => test_sbipa.py} | 6 ++--- 7 files changed, 30 insertions(+), 25 deletions(-) rename test/test_system/{test_sbipi.py => test_sbipa.py} (90%) diff --git a/examples/5qubits/cssfproject.json b/examples/5qubits/cssfproject.json index ebcb5f0..b296a2e 100644 --- a/examples/5qubits/cssfproject.json +++ b/examples/5qubits/cssfproject.json @@ -22,7 +22,7 @@ "max_corrections": 1000 }, "state": { - "file": "{project.directory}/5qubits_in.mtx", + "file": "{project.project_directory}/5qubits_in.mtx", "depth": null, "quantity": null }, diff --git a/examples/5qubits/cssfproject.py b/examples/5qubits/cssfproject.py index 0895d3d..daaca5e 100644 --- a/examples/5qubits/cssfproject.py +++ b/examples/5qubits/cssfproject.py @@ -80,5 +80,6 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, + project_path=Path("./examples/5qubits/cssfproject.json"), ), ) diff --git a/examples/GHZ3/cssfproject.json b/examples/GHZ3/cssfproject.json index b6e3829..8141b23 100644 --- a/examples/GHZ3/cssfproject.json +++ b/examples/GHZ3/cssfproject.json @@ -22,22 +22,26 @@ "max_corrections": 1000 }, "state": { - "file": "{project.directory}/GHZ3_in.mtx", + "file": "{project.project_directory}/GHZ3_in.mtx", "depth": null, "quantity": null }, "resources": { "symmetries": [ - "{project.directory}/GHZ3_sym_0_0.mtx", - "{project.directory}/GHZ3_sym_0_1.mtx", - "{project.directory}/GHZ3_sym_1_0.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx", - "{project.directory}/GHZ3_sym_1_2.mtx", - "{project.directory}/GHZ3_sym_1_3.mtx", - "{project.directory}/GHZ3_sym_1_4.mtx", - "{project.directory}/GHZ3_sym_1_5.mtx", - "{project.directory}/GHZ3_sym_1_6.mtx", - "{project.directory}/GHZ3_sym_1_1.mtx" + [ + "{project.project_directory}/GHZ3_sym_0_0.mtx", + "{project.project_directory}/GHZ3_sym_0_1.mtx" + ], + [ + "{project.project_directory}/GHZ3_sym_1_0.mtx", + "{project.project_directory}/GHZ3_sym_1_1.mtx", + "{project.project_directory}/GHZ3_sym_1_2.mtx", + "{project.project_directory}/GHZ3_sym_1_3.mtx", + "{project.project_directory}/GHZ3_sym_1_4.mtx", + "{project.project_directory}/GHZ3_sym_1_5.mtx", + "{project.project_directory}/GHZ3_sym_1_6.mtx", + "{project.project_directory}/GHZ3_sym_1_1.mtx" + ] ], "projection": null } diff --git a/examples/GHZ4/cssfproject.json b/examples/GHZ4/cssfproject.json index 84b6486..b3fcf53 100644 --- a/examples/GHZ4/cssfproject.json +++ b/examples/GHZ4/cssfproject.json @@ -25,7 +25,7 @@ "max_corrections": 1000 }, "state": { - "file": "{project.directory}/GHZ4_in.mtx", + "file": "{project.project_directory}/GHZ4_in.mtx", "depth": null, "quantity": null }, diff --git a/examples/proj/cssfproject.json b/examples/proj/cssfproject.json index f61a7d0..064e4c0 100644 --- a/examples/proj/cssfproject.json +++ b/examples/proj/cssfproject.json @@ -13,7 +13,7 @@ "tasks": { "main": { "gilbert": { - "mode": "SBiPi", + "mode": "SBiPa", "backend": { "name": "numpy", "precision": "single" @@ -25,17 +25,17 @@ "max_corrections": 1000 }, "state": { - "file": "{project.directory}/proj_in.mtx", + "file": "{project.project_directory}/proj_in.mtx", "depth": 3, "quantity": 3 }, "resources": { "symmetries": null, - "projection": "{project.directory}/proj_proj.mtx" + "projection": "{project.project_directory}/proj_proj.mtx" } } }, - "test_sbipi_proj": { + "test_sbipa_proj": { "gilbert": { "mode": { "$ref": "#/tasks/main/gilbert/mode" diff --git a/test/test_system/base.py b/test/test_system/base.py index 0dd8af1..50eb3c2 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -29,7 +29,7 @@ import numpy as np from cssfinder.api import run_project_from -from cssfinder.io.output_loader import GilbertOutputLoader +from cssfinder.io.gilbert_io import GilbertIO if TYPE_CHECKING: from pathlib import Path @@ -69,12 +69,12 @@ def setup_class(cls) -> None: """ run_project_from(cls.PROJECT_PATH, [cls.TEST_TASK_NAME]) - cls.corrections = GilbertOutputLoader().load_corrections_from( + gilbert_io = GilbertIO() + + cls.corrections = gilbert_io.load_corrections( cls.get_output_directory() / "corrections.json" ) - cls.state = GilbertOutputLoader().load_state_from( - cls.get_output_directory() / "state.mtx" - ) + cls.state = gilbert_io.load_state(cls.get_output_directory() / "state.mtx") @classmethod def teardown_class(cls) -> None: diff --git a/test/test_system/test_sbipi.py b/test/test_system/test_sbipa.py similarity index 90% rename from test/test_system/test_sbipi.py rename to test/test_system/test_sbipa.py index bcf67e4..50d4a74 100644 --- a/test/test_system/test_sbipi.py +++ b/test/test_system/test_sbipa.py @@ -26,12 +26,12 @@ from test.test_system.base import ModeTest -class Test_SBiPi(ModeTest): # noqa: N801 # Underscore used for readability. - """Test behavior of SBiPi mode of Gilbert algorithm.""" +class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. + """Test behavior of SBiPa mode of Gilbert algorithm.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 PROJECT_PATH = Path.cwd() / "examples" / "proj" - TEST_TASK_NAME: str = "test_sbipi_proj" + TEST_TASK_NAME: str = "test_sbipa_proj" OUT_STATE_ROW_COUNT: int = 9 OUT_STATE_COL_COUNT: int = 9 From 8b155b7a453163e42fe76f35da7dd4d1855a00e1 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 02:30:41 +0100 Subject: [PATCH 108/227] Add note about GTK3 problems --- README.md | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/README.md b/README.md index 43a0572..ab24490 100644 --- a/README.md +++ b/README.md @@ -13,6 +13,20 @@ pip install cssfinder If you want to use development version, traverse `Development` and `Packaging` sections below. +### But there is a catch! + +CSSFinder can export PDF reports (and other formats too), but it uses +`weasyprint` for that and `weasyprint` relies on `GTK3`. Unfortunately it is +quite hard to get `GTK3` going on windows and `weasyprint` requires it to work. +Therefore you must handle installation yourself. +[Here](https://doc.courtbouillon.org/weasyprint/stable/first_steps.html#windows) +you can find official guidelines from `weasyprint`. +[This repository](https://github.com/tschoonj/GTK-for-Windows-Runtime-Environment-Installer) +may also help. Alternatively you can use WSL to install and run CSSFinder, as +its seamless to do that. + +Its worth mentioning that other formats are not affected by this issue. + ## Development This project uses `Python` programming language and requires at least python From 9e57ef55648596c7a57caf9a16a46fb6bad05f24 Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 02:33:41 +0100 Subject: [PATCH 109/227] Extend workspace dictionary --- .vscode/dictionary.txt | 15 +++++++++++++++ .vscode/settings.json | 16 +++++++++++++++- 2 files changed, 30 insertions(+), 1 deletion(-) diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index a913d4f..cf1efc0 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -1,36 +1,51 @@ +addinivalue +addoption arange astype +autocopyright +autoflake biseparable cssfinder cssfproject +docformatter +docstrings dtype figheight figsize figwidth forceobj fsnqd +iloc +isort isreal jsonref Krzysztof levelname +libpangocairo looplift matplotlib mmread mmwrite +modifyitems ndarray nogil nopython numba numpy +offsetted +pango pydantic pyplot pytest qubits +redef savefig scipy +snakeviz swapaxes tensordot tracebacks +weasyprint Wiśniewski xlabel ylabel diff --git a/.vscode/settings.json b/.vscode/settings.json index c8c1421..8db58a7 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -72,5 +72,19 @@ ], "python.analysis.autoImportCompletions": true, "python.analysis.completeFunctionParens": false, - "python.analysis.useLibraryCodeForTypes": true + "python.analysis.useLibraryCodeForTypes": true, + "cSpell.ignoreWords": [ + "contourpy", + "dateutil", + "dnspython", + "fonttools", + "idna", + "kiwisolver", + "llvmlite", + "mdurl", + "pygments", + "pyparsing", + "pytz", + "pytzdata" + ] } From 9c2b529e12d00a863b054ec1f9caebb9bad33f0c Mon Sep 17 00:00:00 2001 From: argmaster Date: Tue, 14 Mar 2023 22:45:29 +0100 Subject: [PATCH 110/227] Fix predefined state shape use --- CHANGELOG.md | 2 +- cssfinder/algorithm/gilbert.py | 6 +-- cssfinder/algorithm/mode_util.py | 6 +-- cssfinder/api.py | 72 ++++++++++++++++++++++++-------- cssfinder/cssfproject.py | 24 +++++++++++ 5 files changed, 83 insertions(+), 27 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2b9c9f7..9836ca8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. ### 0.2.0 - Mar 10, 2023 -- Fix SBiPi mode when given fixed system size. System size detection is still +- Fix SBiPa mode when given fixed system size. System size detection is still not working. ### 0.1.0 - Mar 8, 2023 diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 5ad3a1b..379b6f5 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -39,8 +39,9 @@ class Gilbert: """Class interface of gilbert algorithm.""" - def __init__( # noqa: PLR0913 + def __init__( self, + *, initial: npt.NDArray[np.complex128], depth: int, quantity: int, @@ -50,7 +51,6 @@ def __init__( # noqa: PLR0913 visibility: float, symmetries: list[list[npt.NDArray[np.complex128]]], projection: Optional[npt.NDArray[np.complex128]], - *, is_debug: bool = False, ) -> None: self.initial = initial @@ -120,7 +120,7 @@ def run( iterations_executed = (epoch_index + 1) * iterations_per_epoch logging.debug( - "Executed %r iterations, total %r / %r (%.2f)", + "Executed %r iterations, total %r / %r (%.2f%%)", iterations_per_epoch, iterations_executed, total_iterations, diff --git a/cssfinder/algorithm/mode_util.py b/cssfinder/algorithm/mode_util.py index 09cf206..32da6f9 100644 --- a/cssfinder/algorithm/mode_util.py +++ b/cssfinder/algorithm/mode_util.py @@ -27,7 +27,7 @@ import logging import math from abc import ABC, abstractmethod -from dataclasses import asdict, dataclass +from dataclasses import dataclass from typing import TYPE_CHECKING from cssfinder.constants import PRIMES @@ -56,10 +56,6 @@ class Dimensions: """ - def unpack(self) -> dict[str, int]: - """Convert to dictionary.""" - return asdict(self) - class ModeUtil(ABC): """Base class for implementing mode specific utilities eg. diff --git a/cssfinder/api.py b/cssfinder/api.py index 46d42e6..2970dac 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -87,23 +87,7 @@ def run_gilbert( task_output_directory.mkdir(0o764, parents=True, exist_ok=True) - initial_state = asset_io.load_state(config.get_state().file) - state_dimensions = ModeUtil.new(config.mode).get_dimensions(initial_state) - - symmetries = asset_io.load_symmetries(config.get_resources().symmetries) - projection = asset_io.load_projection(config.get_resources().projection) - - algorithm = Gilbert( - initial_state, - **state_dimensions.unpack(), - mode=config.mode, - backend=config.get_backend().name, - precision=config.get_backend().precision, - visibility=config.runtime.visibility, - symmetries=symmetries, - projection=projection, - is_debug=is_debug, - ) + algorithm = create_gilbert(config, asset_io, is_debug=is_debug) for epoch_index in algorithm.run( max_epochs=config.runtime.max_epochs, @@ -111,7 +95,7 @@ def run_gilbert( max_corrections=config.runtime.max_corrections, ): logging.info( - "Executing epoch %r / %r (%.2f) - corrections: %r best: %r", + "Executing epoch %r / %r (%.1f%%) - corrections: %r best: %r", epoch_index + 1, config.runtime.max_epochs, ((epoch_index + 1) / config.runtime.max_epochs) * 100, @@ -126,6 +110,58 @@ def run_gilbert( ) +def create_gilbert( + config: GilbertCfg, asset_io: GilbertIO, *, is_debug: bool +) -> Gilbert: + """Create Gilbert object from configuration with help of specified IO. + + Parameters + ---------- + config : GilbertCfg + Algorithm configuration. + asset_io : GilbertIO + IO manager to use for loading assets. + is_debug : bool + Debug mode flag. + + Returns + ------- + Gilbert + Initialized + + """ + state_config = config.get_state() + + initial_state = asset_io.load_state(state_config.file) + + if state_config.is_predefined_dimensions(): + depth = state_config.get_depth() + quantity = state_config.get_quantity() + + else: + dimensions = ModeUtil.new(config.mode).get_dimensions(initial_state) + depth = dimensions.depth + quantity = dimensions.quantity + + symmetries = asset_io.load_symmetries(config.get_resources().symmetries) + projection = asset_io.load_projection(config.get_resources().projection) + + algorithm = Gilbert( + initial=initial_state, + depth=depth, + quantity=quantity, + mode=config.mode, + backend=config.get_backend().name, + precision=config.get_backend().precision, + visibility=config.runtime.visibility, + symmetries=symmetries, + projection=projection, + is_debug=is_debug, + ) + + return algorithm + + def create_report_from( project_file_path: Path | str, task: str, reports: list[ReportType] ) -> Iterable[Report]: diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 5b275aa..156a755 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -582,6 +582,30 @@ def bind( .as_posix() ) + def is_predefined_dimensions(self) -> bool: + """Return True when both dimensions are available.""" + return self.depth is not None and self.quantity is not None + + def get_depth(self) -> int: + """Return system depth or raise NoDimensionsError if not specified in config.""" + if self.depth is None: + msg = "Depth is not specified." + raise NoDimensionsError(msg) + return self.depth + + def get_quantity(self) -> int: + """Return system quantity or raise NoDimensionsError if not specified in + config. + """ + if self.quantity is None: + msg = "quantity is not specified." + raise NoDimensionsError(msg) + return self.quantity + + +class NoDimensionsError(ValueError): + """Raised when system dimensions were requested but are not specified in config.""" + class RuntimeCfg(CommonBaseModel): """Configuration of runtime limits and parameters influencing algorithm run time.""" From 2a21b1b9c1699c96376a9402c79c74729ccc702c Mon Sep 17 00:00:00 2001 From: argmaster Date: Wed, 15 Mar 2023 00:10:17 +0100 Subject: [PATCH 111/227] Fix tests when running in parallel --- test/test_system/base.py | 24 ++++++++++++++++++------ 1 file changed, 18 insertions(+), 6 deletions(-) diff --git a/test/test_system/base.py b/test/test_system/base.py index 50eb3c2..c74a932 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -24,6 +24,8 @@ import shutil from dataclasses import dataclass +from pathlib import Path +from tempfile import TemporaryDirectory from typing import TYPE_CHECKING import numpy as np @@ -32,8 +34,6 @@ from cssfinder.io.gilbert_io import GilbertIO if TYPE_CHECKING: - from pathlib import Path - import numpy.typing as npt import pandas as pd @@ -50,15 +50,22 @@ class SetupRunProjectMixin: state: npt.NDArray[np.complex128] """Final state matrix.""" + _temporary_directory: TemporaryDirectory + @classmethod def get_project_directory(cls) -> Path: """Path to project directory.""" - return cls.PROJECT_PATH + return cls.get_temporary_directory() / cls.PROJECT_PATH.name @classmethod def get_output_directory(cls) -> Path: """Path to output directory.""" - return cls.PROJECT_PATH / "output" / cls.TEST_TASK_NAME + return cls.get_project_directory() / "output" / cls.TEST_TASK_NAME + + @classmethod + def get_temporary_directory(cls) -> Path: + """Get path to temporary directory shared by tests in this class.""" + return Path(cls._temporary_directory.name) @classmethod def setup_class(cls) -> None: @@ -67,7 +74,13 @@ def setup_class(cls) -> None: Executed once for class, shared between tests within class. """ - run_project_from(cls.PROJECT_PATH, [cls.TEST_TASK_NAME]) + cls._temporary_directory = TemporaryDirectory() + shutil.copytree( + cls.PROJECT_PATH.as_posix(), cls.get_project_directory().as_posix() + ) + print(cls.get_project_directory()) + + run_project_from(cls.get_project_directory(), [cls.TEST_TASK_NAME]) gilbert_io = GilbertIO() @@ -83,7 +96,6 @@ def teardown_class(cls) -> None: Executed once for class, shared between tests within class. """ - shutil.rmtree(cls.get_output_directory()) class ModeTest(SetupRunProjectMixin): From abe964c5a492423069f42388b3549a0d900a4b2b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 00:28:22 +0100 Subject: [PATCH 112/227] Update CHANGELOG --- CHANGELOG.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9836ca8..0d4b106 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,12 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.3.0 - Mar 15, 2023 + +- Add HTML and PDF reports. +- Fix matrix shape deduction in SBiPa mode. +- Fix system tests when run in parallel. + ### 0.2.0 - Mar 10, 2023 - Fix SBiPa mode when given fixed system size. System size detection is still @@ -10,13 +16,9 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. ### 0.1.0 - Mar 8, 2023 - Add project based execution using `cssfproject.json` file. - - Add report generation for projects with `cssfinder project task-report ` command. - - Add fully separable state for n quDits (`FSnQd`) mode. - - Add backend based on numpy with single (32 bit float) and double (64 bit float) precision. - - Add CI system with tests, quality checks and automated deployments. From 8e7c5697ae5421bbd7f6c94dbb4d0778a2fd1c00 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 00:36:46 +0100 Subject: [PATCH 113/227] Avoid running Python tests for markdown files modification --- .github/workflows/reports_tests.yaml | 2 ++ .github/workflows/system_tests.yaml | 2 ++ .github/workflows/type_check.yaml | 2 ++ 3 files changed, 6 insertions(+) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 1fd6059..6d7f72c 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -11,6 +11,8 @@ on: - feature/** - release/** - dependabot/** + paths: + - "!**.md" pull_request: branches: diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 80cf050..eb90620 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -11,6 +11,8 @@ on: - feature/** - release/** - dependabot/** + paths: + - "!**.md" pull_request: branches: diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 7cae78c..946d54c 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -11,6 +11,8 @@ on: - feature/** - release/** - dependabot/** + paths: + - "!**.md" pull_request: branches: From f9a76c7b222d2d110e74f4cfe06da1fa31cc2870 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 01:04:28 +0100 Subject: [PATCH 114/227] Move examples into cssfinder/ to include it in packages --- .github/workflows/reports_tests.yaml | 2 - .github/workflows/system_tests.yaml | 2 - .github/workflows/type_check.yaml | 2 - .vscode/dictionary.txt | 1 + CHANGELOG.md | 1 + README.md | 16 +------ {examples => assets}/.gitignore | 0 .../profiling/5qubits_prof}/5qubits_in.mtx | 0 .../profiling/5qubits_prof/cssfproject.py | 2 +- cssfinder/examples/.gitignore | 1 + .../examples/5qubits}/5qubits_in.mtx | 0 .../examples}/5qubits/cssfproject.json | 0 .../examples}/5qubits/cssfproject.py | 2 +- .../examples}/GHZ3/GHZ3_in.mtx | 0 .../examples}/GHZ3/GHZ3_sym_0_0.mtx | 0 .../examples}/GHZ3/GHZ3_sym_0_1.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_0.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_1.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_2.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_3.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_4.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_5.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_6.mtx | 0 .../examples}/GHZ3/GHZ3_sym_1_7.mtx | 0 .../examples}/GHZ3/cssfproject.json | 0 .../examples}/GHZ4/GHZ4_in.mtx | 0 .../examples}/GHZ4/cssfproject.json | 0 cssfinder/examples/__init__.py | 43 +++++++++++++++++++ .../examples}/proj/cssfproject.json | 0 .../examples}/proj/proj_in.mtx | 0 .../examples}/proj/proj_proj.mtx | 0 cssfinder/log.py | 2 +- test/test_reports/base.py | 6 ++- test/test_system/test_fsnqd.py | 5 ++- test/test_system/test_sbipa.py | 5 ++- 35 files changed, 60 insertions(+), 30 deletions(-) rename {examples => assets}/.gitignore (100%) rename {examples/5qubits => assets/profiling/5qubits_prof}/5qubits_in.mtx (100%) rename {examples => assets}/profiling/5qubits_prof/cssfproject.py (97%) create mode 100644 cssfinder/examples/.gitignore rename {examples/profiling/5qubits_prof => cssfinder/examples/5qubits}/5qubits_in.mtx (100%) rename {examples => cssfinder/examples}/5qubits/cssfproject.json (100%) rename {examples => cssfinder/examples}/5qubits/cssfproject.py (97%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_in.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_0_0.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_0_1.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_0.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_1.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_2.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_3.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_4.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_5.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_6.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/GHZ3_sym_1_7.mtx (100%) rename {examples => cssfinder/examples}/GHZ3/cssfproject.json (100%) rename {examples => cssfinder/examples}/GHZ4/GHZ4_in.mtx (100%) rename {examples => cssfinder/examples}/GHZ4/cssfproject.json (100%) create mode 100644 cssfinder/examples/__init__.py rename {examples => cssfinder/examples}/proj/cssfproject.json (100%) rename {examples => cssfinder/examples}/proj/proj_in.mtx (100%) rename {examples => cssfinder/examples}/proj/proj_proj.mtx (100%) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 6d7f72c..1fd6059 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -11,8 +11,6 @@ on: - feature/** - release/** - dependabot/** - paths: - - "!**.md" pull_request: branches: diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index eb90620..80cf050 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -11,8 +11,6 @@ on: - feature/** - release/** - dependabot/** - paths: - - "!**.md" pull_request: branches: diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 946d54c..7cae78c 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -11,8 +11,6 @@ on: - feature/** - release/** - dependabot/** - paths: - - "!**.md" pull_request: branches: diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index cf1efc0..2193001 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -41,6 +41,7 @@ qubits redef savefig scipy +sdist snakeviz swapaxes tensordot diff --git a/CHANGELOG.md b/CHANGELOG.md index 0d4b106..5e01de3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,7 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. - Add HTML and PDF reports. - Fix matrix shape deduction in SBiPa mode. - Fix system tests when run in parallel. +- Add examples to `CSSFinder` package (wheel/sdist). ### 0.2.0 - Mar 10, 2023 diff --git a/README.md b/README.md index ab24490..5fc5b1e 100644 --- a/README.md +++ b/README.md @@ -197,7 +197,7 @@ and add stage fixes. Then you may retry running `git commit`. To run simple profiling, You can use following command: ``` -python -mcProfile -o "#examples_profile_5qubits_prof.prof" "examples/profiling/5qubits_prof/cssfproject.py" +python -mcProfile -o "#examples_profile_5qubits_prof.prof" "assets/profiling/5qubits_prof/cssfproject.py" ``` Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): @@ -265,17 +265,3 @@ This command generates a short report for a single task in a CSSFinder project. - `--pdf`, `--no-pdf`: include or exclude a PDF report in the generated report. - `--open`, `--no-open`: automatically open report in web browser. - -## Examples - -Here are some examples of how to use CSSFinder from the command line: - -`cssfinder -vvv project ./examples/5qubits/ run` - -This will run all tasks in the specified project and increase the verbosity -level of logging messages to the maximum (debug). - -`cssfinder project ./examples/5qubits/ task-report main --html` - -This will generate an HTML report for the `my_task` task in the specified -project. diff --git a/examples/.gitignore b/assets/.gitignore similarity index 100% rename from examples/.gitignore rename to assets/.gitignore diff --git a/examples/5qubits/5qubits_in.mtx b/assets/profiling/5qubits_prof/5qubits_in.mtx similarity index 100% rename from examples/5qubits/5qubits_in.mtx rename to assets/profiling/5qubits_prof/5qubits_in.mtx diff --git a/examples/profiling/5qubits_prof/cssfproject.py b/assets/profiling/5qubits_prof/cssfproject.py similarity index 97% rename from examples/profiling/5qubits_prof/cssfproject.py rename to assets/profiling/5qubits_prof/cssfproject.py index 338524d..9b85088 100644 --- a/examples/profiling/5qubits_prof/cssfproject.py +++ b/assets/profiling/5qubits_prof/cssfproject.py @@ -78,7 +78,7 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, - project_path=Path("examples/profiling/5qubits_prof/cssfproject.py"), + project_path=Path(__file__).parent / "cssfinder.json", ) diff --git a/cssfinder/examples/.gitignore b/cssfinder/examples/.gitignore new file mode 100644 index 0000000..a56081e --- /dev/null +++ b/cssfinder/examples/.gitignore @@ -0,0 +1 @@ +**/output diff --git a/examples/profiling/5qubits_prof/5qubits_in.mtx b/cssfinder/examples/5qubits/5qubits_in.mtx similarity index 100% rename from examples/profiling/5qubits_prof/5qubits_in.mtx rename to cssfinder/examples/5qubits/5qubits_in.mtx diff --git a/examples/5qubits/cssfproject.json b/cssfinder/examples/5qubits/cssfproject.json similarity index 100% rename from examples/5qubits/cssfproject.json rename to cssfinder/examples/5qubits/cssfproject.json diff --git a/examples/5qubits/cssfproject.py b/cssfinder/examples/5qubits/cssfproject.py similarity index 97% rename from examples/5qubits/cssfproject.py rename to cssfinder/examples/5qubits/cssfproject.py index daaca5e..4e2de96 100644 --- a/examples/5qubits/cssfproject.py +++ b/cssfinder/examples/5qubits/cssfproject.py @@ -80,6 +80,6 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, - project_path=Path("./examples/5qubits/cssfproject.json"), + project_path=Path(__file__).parent / "cssfinder.json", ), ) diff --git a/examples/GHZ3/GHZ3_in.mtx b/cssfinder/examples/GHZ3/GHZ3_in.mtx similarity index 100% rename from examples/GHZ3/GHZ3_in.mtx rename to cssfinder/examples/GHZ3/GHZ3_in.mtx diff --git a/examples/GHZ3/GHZ3_sym_0_0.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_0_0.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_0_0.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_0_0.mtx diff --git a/examples/GHZ3/GHZ3_sym_0_1.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_0_1.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_0_1.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_0_1.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_0.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_0.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_0.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_0.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_1.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_1.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_1.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_1.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_2.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_2.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_2.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_2.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_3.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_3.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_3.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_3.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_4.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_4.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_4.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_4.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_5.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_5.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_5.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_5.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_6.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_6.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_6.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_6.mtx diff --git a/examples/GHZ3/GHZ3_sym_1_7.mtx b/cssfinder/examples/GHZ3/GHZ3_sym_1_7.mtx similarity index 100% rename from examples/GHZ3/GHZ3_sym_1_7.mtx rename to cssfinder/examples/GHZ3/GHZ3_sym_1_7.mtx diff --git a/examples/GHZ3/cssfproject.json b/cssfinder/examples/GHZ3/cssfproject.json similarity index 100% rename from examples/GHZ3/cssfproject.json rename to cssfinder/examples/GHZ3/cssfproject.json diff --git a/examples/GHZ4/GHZ4_in.mtx b/cssfinder/examples/GHZ4/GHZ4_in.mtx similarity index 100% rename from examples/GHZ4/GHZ4_in.mtx rename to cssfinder/examples/GHZ4/GHZ4_in.mtx diff --git a/examples/GHZ4/cssfproject.json b/cssfinder/examples/GHZ4/cssfproject.json similarity index 100% rename from examples/GHZ4/cssfproject.json rename to cssfinder/examples/GHZ4/cssfproject.json diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py new file mode 100644 index 0000000..bfd679d --- /dev/null +++ b/cssfinder/examples/__init__.py @@ -0,0 +1,43 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Root package of examples collection.""" + + +from __future__ import annotations + +from enum import Enum +from pathlib import Path + +EXAMPLES_DIR = Path(__file__).parent + + +class Example(Enum): + """Enumeration of available examples.""" + + e5qubits = "5qubits" + GHZ3 = "GHZ3" + GHZ4 = "GHZ4" + proj = "proj" + + def get_path(self) -> Path: + """Return path to directory containing example.""" + return EXAMPLES_DIR / self.value diff --git a/examples/proj/cssfproject.json b/cssfinder/examples/proj/cssfproject.json similarity index 100% rename from examples/proj/cssfproject.json rename to cssfinder/examples/proj/cssfproject.json diff --git a/examples/proj/proj_in.mtx b/cssfinder/examples/proj/proj_in.mtx similarity index 100% rename from examples/proj/proj_in.mtx rename to cssfinder/examples/proj/proj_in.mtx diff --git a/examples/proj/proj_proj.mtx b/cssfinder/examples/proj/proj_proj.mtx similarity index 100% rename from examples/proj/proj_proj.mtx rename to cssfinder/examples/proj/proj_proj.mtx diff --git a/cssfinder/log.py b/cssfinder/log.py index 3e3df09..4b6a0ef 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -248,7 +248,7 @@ def _create_file_handler( max_log_files: int, ) -> logging.Handler: # Create logging directory before trying to put files there. - log_dir.mkdir(0o777, parents=True, exist_ok=True) + log_dir.mkdir(0o764, parents=True, exist_ok=True) log_file = log_dir / logger_name # If file already exists, logger may decide to start appending its logs to it, # which is not desired - preferably, one file for one session. diff --git a/test/test_reports/base.py b/test/test_reports/base.py index cb7eaf5..8041c84 100644 --- a/test/test_reports/base.py +++ b/test/test_reports/base.py @@ -22,20 +22,22 @@ from __future__ import annotations -from pathlib import Path from test.test_system.base import SetupRunProjectMixin from typing import TYPE_CHECKING from cssfinder.api import create_report_from +from cssfinder.examples import Example if TYPE_CHECKING: + from pathlib import Path + from cssfinder.reports.renderer import ReportType class ReportTestBase(SetupRunProjectMixin): """Validate report behavior.""" - PROJECT_PATH = Path.cwd() / "examples" / "5qubits" + PROJECT_PATH = Example.e5qubits.get_path() TEST_TASK_NAME: str = "test_fsnqd_5qubits" REPORT_TYPE: ReportType diff --git a/test/test_system/test_fsnqd.py b/test/test_system/test_fsnqd.py index 21bfa4d..6c1471c 100644 --- a/test/test_system/test_fsnqd.py +++ b/test/test_system/test_fsnqd.py @@ -22,15 +22,16 @@ from __future__ import annotations -from pathlib import Path from test.test_system.base import ModeTest +from cssfinder.examples import Example + class Test_FSnQd(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of FSnQd mode of Gilbert algorithm.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 - PROJECT_PATH = Path.cwd() / "examples" / "5qubits" + PROJECT_PATH = Example.e5qubits.get_path() TEST_TASK_NAME: str = "test_fsnqd_5qubits" OUT_STATE_ROW_COUNT: int = 32 diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index 50d4a74..912fc12 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -22,15 +22,16 @@ from __future__ import annotations -from pathlib import Path from test.test_system.base import ModeTest +from cssfinder.examples import Example + class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of SBiPa mode of Gilbert algorithm.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 - PROJECT_PATH = Path.cwd() / "examples" / "proj" + PROJECT_PATH = Example.proj.get_path() TEST_TASK_NAME: str = "test_sbipa_proj" OUT_STATE_ROW_COUNT: int = 9 From 9e2570a3141985b412cfe742126aaffcd568fa4f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 01:27:35 +0100 Subject: [PATCH 115/227] Add apply_symmetries implementation --- .../backend/numpy/_impl/_complex128.py | 36 +++++++++++++++ .../backend/numpy/_impl/_complex64.py | 36 +++++++++++++++ cssfinder/algorithm/backend/numpy/impl.py | 29 ++++++++++++ scripts/templates/numpy.pyjinja2 | 46 +++++++++++++++++++ 4 files changed, 147 insertions(+) diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py index 53e512f..c66328f 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py @@ -143,6 +143,42 @@ def rotate( return rho2a # type: ignore[no-any-return] +@jit(nopython=True, nogil=True, cache=True) +def apply_symmetries( + rho: npt.NDArray[np.complex128], symmetries: list[list[npt.NDArray[np.complex128]]] +) -> npt.NDArray[np.complex128]: + """Apply symmetries to density matrix. + + Parameters + ---------- + rho : npt.NDArray[np.complex128] + Density matrix to which we want to apply symmetries. + symmetries : list[list[npt.NDArray[np.complex128]]] + List of matrices representing the symmetries. + + Returns + ------- + npt.NDArray[np.complex128] + The result of applying the symmetries to the given density matrix. + + Notes + ----- + The first input `rho` is modified by this function. If you don't want to modify the + original array, make a copy before passing it to this function. + + This function calculates the trace of output density matrix and normalizes it before + returning. + + """ + output = rho + for row in symmetries: + for sym in row: + output += rotate(output, sym) + + output /= np.trace(output) + return output + + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py index 6511379..1a023e4 100644 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py @@ -147,6 +147,42 @@ def rotate( return rho2a # type: ignore[no-any-return] +@jit(nopython=True, nogil=True, cache=True) +def apply_symmetries( + rho: npt.NDArray[np.complex64], symmetries: list[list[npt.NDArray[np.complex64]]] +) -> npt.NDArray[np.complex64]: + """Apply symmetries to density matrix. + + Parameters + ---------- + rho : npt.NDArray[np.complex64] + Density matrix to which we want to apply symmetries. + symmetries : list[list[npt.NDArray[np.complex64]]] + List of matrices representing the symmetries. + + Returns + ------- + npt.NDArray[np.complex64] + The result of applying the symmetries to the given density matrix. + + Notes + ----- + The first input `rho` is modified by this function. If you don't want to modify the + original array, make a copy before passing it to this function. + + This function calculates the trace of output density matrix and normalizes it before + returning. + + """ + output = rho + for row in symmetries: + for sym in row: + output += rotate(output, sym) + + output /= np.trace(output) + return output + + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py index c4cc46e..944316f 100644 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ b/cssfinder/algorithm/backend/numpy/impl.py @@ -87,6 +87,35 @@ def rotate( """Sandwich an operator with a unitary.""" ... + @staticmethod + def apply_symmetries( + rho: npt.NDArray[PRIMARY], symmetries: list[list[npt.NDArray[PRIMARY]]] + ) -> npt.NDArray[PRIMARY]: + """Apply symmetries to density matrix. + + Parameters + ---------- + rho : npt.NDArray[PRIMARY] + Density matrix to which we want to apply symmetries. + symmetries : list[list[npt.NDArray[PRIMARY]]] + List of matrices representing the symmetries. + + Returns + ------- + npt.NDArray[PRIMARY] + The result of applying the symmetries to the given density matrix. + + Notes + ----- + The first input `rho` is modified by this function. If you don't want to modify + the original array, make a copy before passing it to this function. + + This function calculates the trace of output density matrix and normalizes it + before returning. + + """ + ... + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index 04e8b71..2c89183 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -34,6 +34,7 @@ Spec - Floating precision: {{floating}} - Complex precision: {{complex}} + """ from __future__ import annotations @@ -212,12 +213,56 @@ def rotate( return rho2a # type: ignore[no-any-return] + +{{ jit_nopython() }} +def apply_symmetries( + rho: npt.NDArray[{{complex}}], symmetries: list[list[npt.NDArray[{{complex}}]]] +) -> npt.NDArray[{{complex}}]: + """Apply symmetries to density matrix. + + Parameters + ---------- + rho : npt.NDArray[{{complex}}] + Density matrix to which we want to apply symmetries. + symmetries : list[list[npt.NDArray[{{complex}}]]] + List of matrices representing the symmetries. + + Returns + ------- + npt.NDArray[{{complex}}] + The result of applying the symmetries to the given density matrix. + + Notes + ----- + The first input `rho` is modified by this function. If you don't want to modify the + original array, make a copy before passing it to this function. + + This function calculates the trace of output density matrix and normalizes it before + returning. + + """ + {% if debug_dtype_checks %}assert_dtype(rho, {{complex}}){% endif %} + {% if debug_dtype_checks %} + for row_ in symmetries: + for sym_ in row_: + assert_dtype(sym_, {{complex}}) + {% endif %} + output = rho + for row in symmetries: + for sym in row: + output += rotate(output, sym) + + output /= np.trace(output) + return output + + # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 + {{ jit_forceobj() }} def optimize_d_fs( new_state: npt.NDArray[{{complex}}], @@ -433,6 +478,7 @@ def optimize_bs( ------- npt.NDArray[{{complex}}] Optimized state. + """ {% if debug_dtype_checks %}assert_dtype(new_state, {{complex}}){% endif %} {% if debug_dtype_checks %}assert_dtype(visibility_state, {{complex}}){% endif %} From e084c7300047699adae469ef834d79ed5421cc32 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 01:30:02 +0100 Subject: [PATCH 116/227] Improve release script docstring --- scripts/release.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/scripts/release.py b/scripts/release.py index 08be7d6..24d69cc 100644 --- a/scripts/release.py +++ b/scripts/release.py @@ -45,7 +45,11 @@ def main() -> None: @main.command() @click.argument("version", type=str) def create(version: str) -> None: - """Create release branch and change version of package.""" + """Create release branch and change version of package. + + VERSION - valid SemVer version string, eg. 1.3.2, without 'v' prefix. + + """ retval = subprocess.run(["git", "branch", "--show-current"], capture_output=True) print(retval.stdout.decode("utf-8")) is_dev = retval.stdout.decode("utf-8").startswith("dev") From ae1232beee9eca7e74eae62e46651be86d45884d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 15 Mar 2023 01:30:24 +0100 Subject: [PATCH 117/227] Bump version to 0.3.0 --- README.md | 10 +++++----- cssfinder/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 5fc5b1e..c6edf2e 100644 --- a/README.md +++ b/README.md @@ -85,27 +85,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.2.1` or alike inside. +This will create `dist/` directory with `cssfinder-0.3.0` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.2.1 +pip install ./dist/cssfinder-0.3.0 ``` What you expect is ``` -Successfully installed cssfinder-0.2.1 +Successfully installed cssfinder-0.3.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.2.1 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.3.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.2.1` should be included in this list. +But `cssfinder-0.3.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index d13f818..637b3cf 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.2.1" +__version__ = "0.3.0" diff --git a/pyproject.toml b/pyproject.toml index 952bbed..f38f9d3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.2.1" +version = "0.3.0" description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", From 353806eaab18ef298887d5a7c29fdf8e4dac24fe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Thu, 16 Mar 2023 22:39:28 +0100 Subject: [PATCH 118/227] Implement projections and symmetries support --- cssfinder/algorithm/backend/base.py | 38 +++++++++- cssfinder/algorithm/backend/numpy/base.py | 91 ++++++++++++++++++----- cssfinder/algorithm/gilbert.py | 37 +++++++-- cssfinder/api.py | 5 +- cssfinder/examples/proj/cssfproject.json | 25 ++++++- test/test_system/base.py | 8 +- test/test_system/test_sbipa.py | 16 ++++ 7 files changed, 187 insertions(+), 33 deletions(-) diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index e0fd705..c268029 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -59,18 +59,48 @@ def __init__( # noqa: PLR0913 self.mode = mode self.is_debug = is_debug + def set_symmetries( + self, symmetries: list[list[npt.NDArray[np.complex128]]] + ) -> None: + """Set symmetries to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + symmetries : list[list[npt.NDArray[np.complex128]]] + Array of symmetries. + + """ + raise NotImplementedError(self.set_symmetries.__qualname__) + + def set_projection(self, projection: npt.NDArray[np.complex128]) -> None: + """Set projection to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + projection : npt.NDArray[np.complex128] + Projection matrix. + + """ + raise NotImplementedError(self.set_projection.__qualname__) + def get_state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" - raise NotImplementedError + raise NotImplementedError(self.get_state.__qualname__) def get_corrections(self) -> list[tuple[int, int, float]]: """Return list of all corrections found during optimization.""" - raise NotImplementedError + raise NotImplementedError(self.get_corrections.__qualname__) def get_corrections_count(self) -> int: """Return number of all corrections found during optimization.""" - raise NotImplementedError + raise NotImplementedError(self.get_corrections_count.__qualname__) def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" - raise NotImplementedError + raise NotImplementedError(self.run_epoch.__qualname__) diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index 610845e..d7a055d 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -25,8 +25,9 @@ from __future__ import annotations +import logging from types import MethodType -from typing import TYPE_CHECKING, Generic, TypeVar, cast +from typing import TYPE_CHECKING, Generic, Optional, TypeVar, cast import numpy as np import numpy.typing as npt @@ -50,6 +51,8 @@ class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): _visibility_reduced: npt.NDArray[PRIMARY] _corrections: list[tuple[int, int, float]] + _symmetries: list[list[npt.NDArray[PRIMARY]]] + _projection: Optional[npt.NDArray[PRIMARY]] impl: Implementation[PRIMARY, SECONDARY_co] primary_t: type[PRIMARY] @@ -67,10 +70,15 @@ def __init__( # noqa: PLR0913 ) -> None: super().__init__(initial, depth, quantity, mode, visibility, is_debug=is_debug) + self.initial = initial.astype(self.primary_t) + self._visibility = self._create_visibility_matrix() self._intermediate = self._create_intermediate_state() self._corrections = [] + self._symmetries = [] + self._projection = None + self._aa4: SECONDARY_co = 2 * self.impl.product( self._visibility, self._intermediate, @@ -91,24 +99,6 @@ def __init__( # noqa: PLR0913 if not self.is_debug: self.jit() - def jit(self) -> None: - """JIT compile performance critical parts of backend with numba.""" - _update_state = jit( # type: ignore[assignment] - forceobj=True, - cache=True, - looplift=False, - )( - self.__class__._update_state, # noqa: SLF001 - ) - - self._update_state = MethodType(_update_state, self) # type: ignore[assignment] - - run_epoch = jit(forceobj=True, cache=True, looplift=False)( - self.__class__.run_epoch, - ) - - self.run_epoch = MethodType(run_epoch, self) # type: ignore[assignment] - def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: vis_state = self.visibility * self.initial inv_vis_ident = (1 - self.visibility) * np.identity( @@ -124,6 +114,44 @@ def _create_intermediate_state(self) -> npt.NDArray[PRIMARY]: np.fill_diagonal(intermediate, self._visibility.diagonal()) return intermediate.astype(self.primary_t) + def set_symmetries( + self, symmetries: list[list[npt.NDArray[np.complex128]]] + ) -> None: + """Set symmetries to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + symmetries : list[list[npt.NDArray[np.complex128]]] + Array of symmetries. + + """ + self._symmetries = [ + [cell.astype(self.primary_t) for cell in row] for row in symmetries + ] + if self._symmetries: + self._intermediate = self.impl.apply_symmetries( + self._intermediate, self._symmetries + ) + + def set_projection(self, projection: npt.NDArray[np.complex128]) -> None: + """Set projection to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + projection : npt.NDArray[np.complex128] + Projection matrix. + + """ + self._projection = projection.astype(self.primary_t) + self._intermediate = self.impl.rotate(self._intermediate, self._projection) + logging.debug("Projection have been set %r", self._projection) + def get_state(self) -> npt.NDArray[np.complex128]: """Return current system state with all optimizations applied.""" return self._intermediate.copy().astype(np.complex128) @@ -136,6 +164,24 @@ def get_corrections_count(self) -> int: """Return number of all corrections found during optimization.""" return len(self._corrections) + def jit(self) -> None: + """JIT compile performance critical parts of backend with numba.""" + _update_state = jit( # type: ignore[assignment] + forceobj=True, + cache=True, + looplift=False, + )( + self.__class__._update_state, # noqa: SLF001 + ) + + self._update_state = MethodType(_update_state, self) # type: ignore[assignment] + + run_epoch = jit(forceobj=True, cache=True, looplift=False)( + self.__class__.run_epoch, + ) + + self.run_epoch = MethodType(run_epoch, self) # type: ignore[assignment] + def run_epoch(self, iterations: int, epoch_index: int) -> None: """Run sequence of iterations without stopping to check any stop conditions.""" depth = self.depth @@ -188,6 +234,13 @@ def _update_state( # noqa: PLR0913 epochs, ) + if self._symmetries: + self._intermediate = self.impl.apply_symmetries( + self._intermediate, self._symmetries + ) + if self._projection is not None: + self._intermediate = self.impl.rotate(self._intermediate, self._projection) + aa3: SECONDARY_co = self.impl.product(alternative_state, alternative_state) aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) aa5: SECONDARY_co = 2 * self.impl.product(self._intermediate, alternative_state) diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 379b6f5..3b7aa00 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -25,7 +25,7 @@ import logging from time import perf_counter -from typing import TYPE_CHECKING, Iterable, Optional +from typing import TYPE_CHECKING, Iterable from cssfinder.algorithm import backend as _backend @@ -49,8 +49,6 @@ def __init__( backend: Backend, precision: Precision, visibility: float, - symmetries: list[list[npt.NDArray[np.complex128]]], - projection: Optional[npt.NDArray[np.complex128]], is_debug: bool = False, ) -> None: self.initial = initial @@ -61,9 +59,6 @@ def __init__( self.precision = precision self.visibility = visibility - self.symmetries = symmetries - self.projection = projection - self.is_debug = is_debug backend_type = _backend.select(backend, self.precision) @@ -76,6 +71,36 @@ def __init__( is_debug=self.is_debug, ) + def set_symmetries( + self, symmetries: list[list[npt.NDArray[np.complex128]]] + ) -> None: + """Set symmetries to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + symmetries : list[list[npt.NDArray[np.complex128]]] + Array of symmetries. + + """ + self.backend.set_symmetries(symmetries) + + def set_projection(self, projection: npt.NDArray[np.complex128]) -> None: + """Set projection to use during calculations. + + This operation may involve type conversion and copying of symmetries, therefore + if may be slow and should should be done only once. + + Parameters + ---------- + projection : npt.NDArray[np.complex128] + Projection matrix. + + """ + self.backend.set_projection(projection) + def run( self, max_epochs: int, diff --git a/cssfinder/api.py b/cssfinder/api.py index 2970dac..fbf5980 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -154,10 +154,11 @@ def create_gilbert( backend=config.get_backend().name, precision=config.get_backend().precision, visibility=config.runtime.visibility, - symmetries=symmetries, - projection=projection, is_debug=is_debug, ) + algorithm.set_symmetries(symmetries) + if projection is not None: + algorithm.set_projection(projection) return algorithm diff --git a/cssfinder/examples/proj/cssfproject.json b/cssfinder/examples/proj/cssfproject.json index 064e4c0..631d489 100644 --- a/cssfinder/examples/proj/cssfproject.json +++ b/cssfinder/examples/proj/cssfproject.json @@ -31,7 +31,7 @@ }, "resources": { "symmetries": null, - "projection": "{project.project_directory}/proj_proj.mtx" + "projection": null } } }, @@ -56,6 +56,29 @@ "$ref": "#/tasks/main/gilbert/resources" } } + }, + "test_sbipa_proj_with_projection": { + "gilbert": { + "mode": { + "$ref": "#/tasks/main/gilbert/mode" + }, + "backend": { + "$ref": "#/tasks/main/gilbert/backend" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 10, + "iters_per_epoch": 10, + "max_corrections": 10 + }, + "state": { + "$ref": "#/tasks/main/gilbert/state" + }, + "resources": { + "symmetries": null, + "projection": "{project.project_directory}/proj_proj.mtx" + } + } } } } diff --git a/test/test_system/base.py b/test/test_system/base.py index c74a932..827e9b9 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -74,6 +74,8 @@ def setup_class(cls) -> None: Executed once for class, shared between tests within class. """ + np.random.seed(0) # noqa: NPY002 + cls._temporary_directory = TemporaryDirectory() shutil.copytree( cls.PROJECT_PATH.as_posix(), cls.get_project_directory().as_posix() @@ -142,7 +144,11 @@ def test_last_better_than_first_correction(self) -> None: values = self.corrections["value"] first, last = values.iloc[0], values.iloc[-1] - assert first > last > self.MIN_CORRECTION_VALUE + assert first > last > self.MIN_CORRECTION_VALUE, ( + first, + last, + self.MIN_CORRECTION_VALUE, + ) def test_state_shape(self) -> None: """Check if output state has correct shape.""" diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index 912fc12..63b54dc 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -39,3 +39,19 @@ class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. MIN_CORRECTION_VALUE: float = 0.070 MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.120) + + +class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readability. + ModeTest +): + """Test behavior of SBiPa mode of Gilbert algorithm with projections.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + PROJECT_PATH = Example.proj.get_path() + TEST_TASK_NAME: str = "test_sbipa_proj_with_projection" + + OUT_STATE_ROW_COUNT: int = 9 + OUT_STATE_COL_COUNT: int = 9 + + MIN_CORRECTION_VALUE: float = 0.090 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.130) From 0e0dbecd3f1911ed6208c5c9ee8d5160d140cec0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 17 Mar 2023 01:15:59 +0100 Subject: [PATCH 119/227] Add interface for accessing bundled examples --- assets/profiling/5qubits_prof/cssfproject.py | 2 +- cssfinder/api.py | 2 +- cssfinder/cli.py | 160 ++++++++++++++++++ cssfinder/crossplatform.py | 92 ++++++++++ cssfinder/cssfproject.py | 2 +- cssfinder/enums.py | 10 ++ cssfinder/examples/5qubits/cssfproject.json | 2 +- cssfinder/examples/5qubits/cssfproject.py | 2 +- cssfinder/examples/GHZ3/cssfproject.json | 22 +-- .../GHZ3/{ => symmetries}/GHZ3_sym_0_0.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_0_1.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_0.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_1.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_2.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_3.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_4.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_5.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_6.mtx | 0 .../GHZ3/{ => symmetries}/GHZ3_sym_1_7.mtx | 0 cssfinder/examples/GHZ4/cssfproject.json | 2 +- cssfinder/examples/__init__.py | 88 ++++++++++ cssfinder/examples/proj/cssfproject.json | 2 +- 22 files changed, 368 insertions(+), 18 deletions(-) create mode 100644 cssfinder/crossplatform.py rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_0_0.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_0_1.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_0.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_1.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_2.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_3.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_4.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_5.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_6.mtx (100%) rename cssfinder/examples/GHZ3/{ => symmetries}/GHZ3_sym_1_7.mtx (100%) diff --git a/assets/profiling/5qubits_prof/cssfproject.py b/assets/profiling/5qubits_prof/cssfproject.py index 9b85088..1001555 100644 --- a/assets/profiling/5qubits_prof/cssfproject.py +++ b/assets/profiling/5qubits_prof/cssfproject.py @@ -78,7 +78,7 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, - project_path=Path(__file__).parent / "cssfinder.json", + project_path=Path(__file__).parent / "cssfproject.json", ) diff --git a/cssfinder/api.py b/cssfinder/api.py index fbf5980..39001be 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -171,7 +171,7 @@ def create_report_from( Parameters ---------- project_file_path : Path | str - Path to cssfinder.json file or directory containing one. + Path to cssfproject.json file or directory containing one. task : str Name or glob expression matching task name, expected to result in selection of single task. diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 64108ca..8ad2d51 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -24,20 +24,27 @@ from __future__ import annotations import logging +import shutil import webbrowser from dataclasses import dataclass +from pathlib import Path +from typing import Callable, Optional import click import pendulum +import rich import cssfinder +from cssfinder import examples from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError from cssfinder.api import AmbiguousTaskKeyError, create_report_from, run_project_from +from cssfinder.crossplatform import open_file_explorer, open_terminal from cssfinder.cssfproject import ( InvalidCSSFProjectContentError, MalformedProjectFileError, ProjectFileNotFoundError, ) +from cssfinder.enums import ExitCode from cssfinder.log import configure_logger from cssfinder.reports.renderer import ReportType @@ -89,6 +96,7 @@ def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: @click.pass_context @click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) def _project(ctx: click.Context, path: str) -> None: + """Group of commands for interaction with projects.""" ctx.obj.project_path = path @@ -199,3 +207,155 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> def _log_exit(code: int) -> None: logging.exception("Exit with code code.") raise SystemExit(code) + + +@main.group("examples") +def _examples() -> None: + """Group of commands for accessing bundled examples.""" + + +@_examples.command("list") +def _examples_list() -> None: + """Show list of all available example projects.""" + console = rich.get_console() + table = examples.Example.get_info_table() + console.print() + console.print(table) + + +def validate_mutually_exclusive( + this: str, + other: str, +) -> Callable[[click.Context, dict[str, str], str], Optional[str]]: + """Return callback checking for mutually exclusive options.""" + + def _( + ctx: click.Context, param: dict[str, str], value: Optional[str] # noqa: ARG001 + ) -> Optional[str]: + if value is not None and ctx.params.get(other) is not None: + msg = f"{this!r} and {other!r} options are mutually exclusive." + raise click.BadParameter(msg) + + return value + + return _ + + +@_examples.command("clone") +@click.option( + "--sha", + default=None, + help="SHA of example. Mutually exclusive with `--name`.", + expose_value=True, +) +@click.option( + "--name", + default=None, + help="Name of example. Mutually exclusive with `--sha`.", + expose_value=True, + callback=validate_mutually_exclusive("name", "sha"), +) +@click.option( + "-o", + "--out", + default=None, + help="Path to destination directory, where project folder should be placed.", +) +@click.option( + "-f", + "--force", + "force_overwrite", + is_flag=True, + help="Remove and recreate project folder in destination if one already exists.", +) +@click.option( + "-t", + "--terminal", + "do_open_terminal", + is_flag=True, + help="When set, automatically open new terminal window in example directory.", +) +@click.option( + "-e", + "--explorer", + "do_open_explorer", + is_flag=True, + help="When set, automatically open new explorer window in example directory.", +) +def _examples_clone( + sha: Optional[str], + name: Optional[str], + out: Optional[str], + *, + force_overwrite: bool, + do_open_terminal: bool, + do_open_explorer: bool, +) -> None: + """Clone one of examples to specific location.""" + destination = Path.cwd() if out is None else Path(out).expanduser().resolve() + + example = _select_example(sha, name) + + rich.print( + f"Found example {example.name!r}, {example.get_project().meta.author!r}, " + f"{example.get_sha256().hexdigest()[:8]!r}" + ) + + destination_project_folder = _get_validated_destination( + destination, example, force_overwrite=force_overwrite + ) + + example.clone(destination) + if do_open_explorer: + open_file_explorer(destination_project_folder) + if do_open_terminal: + open_terminal(destination_project_folder) + + +def _get_validated_destination( + destination: Path, example: examples.Example, *, force_overwrite: bool +) -> Path: + destination_project_folder = destination / example.folder_name + is_destination_exists = destination_project_folder.exists() + + try: + is_destination_non_empty = len(list(destination_project_folder.iterdir())) > 0 + except FileNotFoundError: + is_destination_non_empty = False + + if is_destination_exists and is_destination_non_empty: + if force_overwrite: + shutil.rmtree(destination_project_folder.as_posix()) + + else: + logging.critical( + "Output directory already contains folder %r, change destination " + "folder. Remove existing folder or use `--force` flag to remove it " + "automatically.", + example.folder_name, + ) + raise SystemExit(ExitCode.EXAMPLE_DESTINATION_ALREADY_EXISTS) + + return destination_project_folder + + +def _select_example(sha: Optional[str], name: Optional[str]) -> examples.Example: + if name is not None: + try: + example = examples.Example.select_by_name(name) + except KeyError as exc: + logging.critical("Example with name %r not found.", sha) + raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc + + elif sha is not None: + try: + example = examples.Example.select_by_sha256(sha) + except KeyError as exc: + logging.critical("Example with sha %r not found.", sha) + raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc + + else: + logging.critical("Neither `--name` not `--sha` given, no example was selected.") + raise SystemExit(ExitCode.EXAMPLE_SHA_NOR_NAME_GIVEN) + + return example diff --git a/cssfinder/crossplatform.py b/cssfinder/crossplatform.py new file mode 100644 index 0000000..51fefd5 --- /dev/null +++ b/cssfinder/crossplatform.py @@ -0,0 +1,92 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contain platform specific implementations of common actions like opening programs.""" +from __future__ import annotations + +import os +import platform +import subprocess +from enum import Enum +from typing import TYPE_CHECKING, Any + +if TYPE_CHECKING: + from pathlib import Path + + +class System(Enum): + """Enumeration of system names created to avoid typos.""" + + Win32 = "Windows" + MacOS = "Darwin" + Linux = "Linux" + Other = "Other" + + @classmethod + def _missing_(cls, value: Any) -> System: # noqa: ARG003 + return cls.Other + + +SYSTEM = System(platform.system()) + + +if System.Win32 == SYSTEM: + + def open_file_explorer(path: Path) -> None: + """Open file explorer application specific to platform.""" + subprocess.Popen(["explorer", str(path)]) + + def open_terminal(path: Path) -> None: + """Open terminal application specific to platform.""" + subprocess.Popen(["cmd", "/K", f"cd /D {path}"]) + +elif System.MacOS == SYSTEM: + + def open_file_explorer(path: Path) -> None: + """Open file explorer application specific to platform.""" + subprocess.Popen(["open", path]) + + def open_terminal(path: Path) -> None: + """Open terminal application specific to platform.""" + subprocess.Popen(["open", "-a", "Terminal", path]) + +elif System.Linux == SYSTEM: + + def open_file_explorer(path: Path) -> None: + """Open file explorer application specific to platform.""" + subprocess.Popen(["xdg-open", path]) + + def open_terminal(path: Path) -> None: + """Open terminal application specific to platform.""" + terminal = os.environ.get("TERMINAL", "x-terminal-emulator") + subprocess.Popen([terminal, "--working-directory", str(path)]) + +elif System.Other == SYSTEM: + + def open_file_explorer(path: Path) -> None: # noqa: ARG001 + """Open file explorer application specific to platform.""" + msg = f"Unsupported platform: {platform.system()}" + raise ValueError(msg) + + def open_terminal(path: Path) -> None: # noqa: ARG001 + """Open terminal application specific to platform.""" + msg = f"Unsupported platform: {platform.system()}" + raise ValueError(msg) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 156a755..e5110bd 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -152,7 +152,7 @@ def load_project(cls, file_or_directory: str | Path) -> Self: file_or_directory = Path(file_or_directory).expanduser().resolve() # When points to directory, dir must contain cssfproject.json file - if file_or_directory.is_dir(): + if not file_or_directory.name.endswith(".json") and file_or_directory.is_dir(): file_or_directory /= PROJECT_FILE_NAME project_path = file_or_directory diff --git a/cssfinder/enums.py b/cssfinder/enums.py index ee242c9..7cf6f5f 100644 --- a/cssfinder/enums.py +++ b/cssfinder/enums.py @@ -46,3 +46,13 @@ def _missing_(cls, value: object) -> Self: class NoMatchingEnumValueError(AttributeError): """Raised when CaseInsensitiveEnum subclass can't find matching enum value.""" + + +class ExitCode: + """Enumeration of standardized CSSFinder exit codes.""" + + EXAMPLE_SHA_NOR_NAME_GIVEN = 67465 + EXAMPLE_WITH_NAME_NOT_FOUND = 67470 + EXAMPLE_WITH_SHA_NOT_FOUND = 67475 + + EXAMPLE_DESTINATION_ALREADY_EXISTS = 67480 diff --git a/cssfinder/examples/5qubits/cssfproject.json b/cssfinder/examples/5qubits/cssfproject.json index b296a2e..9eff904 100644 --- a/cssfinder/examples/5qubits/cssfproject.json +++ b/cssfinder/examples/5qubits/cssfproject.json @@ -1,7 +1,7 @@ { "version": "1.0.0", "meta": { - "author": "Example", + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", "email": "example@example.com", "name": "5qubits", "description": "Project description", diff --git a/cssfinder/examples/5qubits/cssfproject.py b/cssfinder/examples/5qubits/cssfproject.py index 4e2de96..3a61855 100644 --- a/cssfinder/examples/5qubits/cssfproject.py +++ b/cssfinder/examples/5qubits/cssfproject.py @@ -80,6 +80,6 @@ version=SemVerStr("1.0.0"), ), tasks=TASKS, - project_path=Path(__file__).parent / "cssfinder.json", + project_path=Path(__file__).parent / "cssfproject.json", ), ) diff --git a/cssfinder/examples/GHZ3/cssfproject.json b/cssfinder/examples/GHZ3/cssfproject.json index 8141b23..f8cfc1a 100644 --- a/cssfinder/examples/GHZ3/cssfproject.json +++ b/cssfinder/examples/GHZ3/cssfproject.json @@ -1,7 +1,7 @@ { "version": "1.0.0", "meta": { - "author": "Example", + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", "email": "example@example.com", "name": "GHZ3", "description": "Project description", @@ -29,18 +29,18 @@ "resources": { "symmetries": [ [ - "{project.project_directory}/GHZ3_sym_0_0.mtx", - "{project.project_directory}/GHZ3_sym_0_1.mtx" + "{project.project_directory}/symmetries/GHZ3_sym_0_0.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_0_1.mtx" ], [ - "{project.project_directory}/GHZ3_sym_1_0.mtx", - "{project.project_directory}/GHZ3_sym_1_1.mtx", - "{project.project_directory}/GHZ3_sym_1_2.mtx", - "{project.project_directory}/GHZ3_sym_1_3.mtx", - "{project.project_directory}/GHZ3_sym_1_4.mtx", - "{project.project_directory}/GHZ3_sym_1_5.mtx", - "{project.project_directory}/GHZ3_sym_1_6.mtx", - "{project.project_directory}/GHZ3_sym_1_1.mtx" + "{project.project_directory}/symmetries/GHZ3_sym_1_0.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_1.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_2.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_3.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_4.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_5.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_6.mtx", + "{project.project_directory}/symmetries/GHZ3_sym_1_1.mtx" ] ], "projection": null diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_0_0.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_0.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_0_0.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_0.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_0_1.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_1.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_0_1.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_1.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_0.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_0.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_0.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_0.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_1.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_1.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_1.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_1.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_2.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_2.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_2.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_2.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_3.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_3.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_3.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_3.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_4.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_4.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_4.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_4.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_5.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_5.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_5.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_5.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_6.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_6.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_6.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_6.mtx diff --git a/cssfinder/examples/GHZ3/GHZ3_sym_1_7.mtx b/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_7.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_sym_1_7.mtx rename to cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_7.mtx diff --git a/cssfinder/examples/GHZ4/cssfproject.json b/cssfinder/examples/GHZ4/cssfproject.json index b3fcf53..32c6df5 100644 --- a/cssfinder/examples/GHZ4/cssfproject.json +++ b/cssfinder/examples/GHZ4/cssfproject.json @@ -1,7 +1,7 @@ { "version": "1.0.0", "meta": { - "author": "Example", + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", "email": "example@example.com", "name": "5qubits", "description": "Project description", diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index bfd679d..321ee4a 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -24,8 +24,18 @@ from __future__ import annotations +import hashlib +import shutil from enum import Enum from pathlib import Path +from typing import TYPE_CHECKING + +from rich.table import Table + +from cssfinder.cssfproject import CSSFProject + +if TYPE_CHECKING: + from typing_extensions import Self EXAMPLES_DIR = Path(__file__).parent @@ -38,6 +48,84 @@ class Example(Enum): GHZ4 = "GHZ4" proj = "proj" + @property + def folder_name(self) -> str: + """Return name of project folder.""" + return self.value + def get_path(self) -> Path: """Return path to directory containing example.""" return EXAMPLES_DIR / self.value + + def get_sha256(self) -> hashlib._Hash: # noqa: SLF001 + """Calculate and return SHA-256 of example project file.""" + source = self.get_path() / "cssfproject.json" + content = source.read_bytes() + return hashlib.sha256(content) + + def get_project(self) -> CSSFProject: + """Return project object from example.""" + return CSSFProject.load_project(self.get_path()) + + @classmethod + def get_info_table(cls) -> Table: + """Create rich Table object containing information about available examples.""" + table = Table(title="Available examples.", show_lines=True) + table.add_column("Name", justify="right", no_wrap=True, style="deep_sky_blue1") + table.add_column("SHA", justify="center", no_wrap=True) + table.add_column("Author", justify="center", no_wrap=True) + table.add_column("Version", justify="center", no_wrap=True) + table.add_column("Tasks", justify="center", no_wrap=True) + table.add_column("Path", justify="left", no_wrap=False, style="green") + + for entry in cls: + project = entry.get_project() + + table.add_row( + entry.value, + entry.get_sha256().hexdigest()[:8], + project.meta.author, + project.meta.version, + f"{len(project.tasks)}", + entry.get_path().as_posix(), + ) + + return table + + @classmethod + def select_by_name(cls, name: str) -> Self: + """Select Example by its name.""" + for example in cls: + if example.value == name: + return example + + msg = f"Example with name {name!r} not found." + raise KeyError(msg) + + @classmethod + def select_by_sha256(cls, sha: str) -> Self: + """Select Example by its sha.""" + for example in cls: + if example.get_sha256().hexdigest().startswith(sha): + return example + + msg = f"Example with sha {sha!r} not found." + raise KeyError(msg) + + def clone(self, dest: Path) -> None: + """Clone project folder to different destination.""" + src = self.get_path() + + dest_dir = dest / src.name + dest_dir.mkdir(0o764, parents=True, exist_ok=True) + + for file in src.iterdir(): + relative_path = file.relative_to(src).as_posix() + + if relative_path.startswith(("__pycache__", "output")): + continue + + if file.is_dir(): + shutil.copytree(file.as_posix(), (dest_dir / relative_path).as_posix()) + else: + shutil.copy(file.as_posix(), (dest_dir / relative_path).as_posix()) diff --git a/cssfinder/examples/proj/cssfproject.json b/cssfinder/examples/proj/cssfproject.json index 631d489..02aa11d 100644 --- a/cssfinder/examples/proj/cssfproject.json +++ b/cssfinder/examples/proj/cssfproject.json @@ -1,7 +1,7 @@ { "version": "1.0.0", "meta": { - "author": "Example", + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", "email": "example@example.com", "name": "5qubits", "description": "Project description", From ebdb16ef095bb5fa4040f2e4f895e96bb515f00e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 17 Mar 2023 01:17:56 +0100 Subject: [PATCH 120/227] Bump version to 0.4.0 --- README.md | 10 +++++----- cssfinder/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index c6edf2e..ad24dc1 100644 --- a/README.md +++ b/README.md @@ -85,27 +85,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.3.0` or alike inside. +This will create `dist/` directory with `cssfinder-0.4.0` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.3.0 +pip install ./dist/cssfinder-0.4.0 ``` What you expect is ``` -Successfully installed cssfinder-0.3.0 +Successfully installed cssfinder-0.4.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.3.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.4.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.3.0` should be included in this list. +But `cssfinder-0.4.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 637b3cf..9759535 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.3.0" +__version__ = "0.4.0" diff --git a/pyproject.toml b/pyproject.toml index f38f9d3..b81878c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.3.0" +version = "0.4.0" description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", From a0ce27e702ac8ac079e74a5f119cdaf88f3f3ce3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 17 Mar 2023 01:20:43 +0100 Subject: [PATCH 121/227] Extend workspace dictionary --- .vscode/dictionary.txt | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index 2193001..1104940 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -1,3 +1,4 @@ +__qualname__ addinivalue addoption arange @@ -5,6 +6,7 @@ astype autocopyright autoflake biseparable +crossplatform cssfinder cssfproject docformatter @@ -15,6 +17,7 @@ figsize figwidth forceobj fsnqd +hlines iloc isort isreal @@ -22,7 +25,9 @@ jsonref Krzysztof levelname libpangocairo +linestyles looplift +Marcin matplotlib mmread mmwrite @@ -35,11 +40,13 @@ numpy offsetted pango pydantic +pyjinja pyplot pytest qubits redef savefig +sbipa scipy sdist snakeviz @@ -47,6 +54,7 @@ swapaxes tensordot tracebacks weasyprint +Wieśniak Wiśniewski xlabel ylabel From 729460c9e4a5fe92944c6d1e27db31faa50cedd1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 17 Mar 2023 01:22:33 +0100 Subject: [PATCH 122/227] Update CHANGELOG --- CHANGELOG.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5e01de3..05c6303 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,11 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.4.0 - Mar 17, 2023 + +- Add interface for accessing bundled examples. +- Add support for projections and symmetries. + ### 0.3.0 - Mar 15, 2023 - Add HTML and PDF reports. From f20950856a7ea1099ba9b2ef6863d6845c7bc969 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sat, 18 Mar 2023 02:25:52 +0100 Subject: [PATCH 123/227] Cleanup in examples - better grouping --- assets/profiling/5qubits_prof/cssfproject.py | 85 --- cssfinder/cli.py | 28 +- cssfinder/cssfproject.py | 79 ++- cssfinder/enums.py | 11 +- .../{5qubits => 5qubits_json}/5qubits_in.mtx | 0 .../cssfproject.json | 4 +- cssfinder/examples/5qubits_py/5qubits_in.mtx | 531 ++++++++++++++++++ .../{5qubits => 5qubits_py}/cssfproject.py | 25 +- .../examples/{GHZ3 => GHZ3_json}/GHZ3_in.mtx | 0 .../{GHZ3 => GHZ3_json}/cssfproject.json | 4 +- .../symmetries/GHZ3_sym_0_0.mtx | 0 .../symmetries/GHZ3_sym_0_1.mtx | 0 .../symmetries/GHZ3_sym_1_0.mtx | 0 .../symmetries/GHZ3_sym_1_1.mtx | 0 .../symmetries/GHZ3_sym_1_2.mtx | 0 .../symmetries/GHZ3_sym_1_3.mtx | 0 .../symmetries/GHZ3_sym_1_4.mtx | 0 .../symmetries/GHZ3_sym_1_5.mtx | 0 .../symmetries/GHZ3_sym_1_6.mtx | 0 .../symmetries/GHZ3_sym_1_7.mtx | 0 .../examples/{GHZ4 => GHZ4_json}/GHZ4_in.mtx | 0 .../{GHZ4 => GHZ4_json}/cssfproject.json | 4 +- .../{proj => SBiPa_json}/cssfproject.json | 6 +- .../projection.mtx} | 0 .../proj_in.mtx => SBiPa_json/state.mtx} | 0 cssfinder/examples/__init__.py | 73 ++- test/test_reports/base.py | 2 +- test/test_system/test_fsnqd.py | 2 +- test/test_system/test_sbipa.py | 4 +- 29 files changed, 695 insertions(+), 163 deletions(-) delete mode 100644 assets/profiling/5qubits_prof/cssfproject.py rename cssfinder/examples/{5qubits => 5qubits_json}/5qubits_in.mtx (100%) rename cssfinder/examples/{5qubits => 5qubits_json}/cssfproject.json (91%) create mode 100644 cssfinder/examples/5qubits_py/5qubits_in.mtx rename cssfinder/examples/{5qubits => 5qubits_py}/cssfproject.py (83%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/GHZ3_in.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/cssfproject.json (92%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_0_0.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_0_1.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_0.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_1.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_2.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_3.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_4.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_5.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_6.mtx (100%) rename cssfinder/examples/{GHZ3 => GHZ3_json}/symmetries/GHZ3_sym_1_7.mtx (100%) rename cssfinder/examples/{GHZ4 => GHZ4_json}/GHZ4_in.mtx (100%) rename cssfinder/examples/{GHZ4 => GHZ4_json}/cssfproject.json (85%) rename cssfinder/examples/{proj => SBiPa_json}/cssfproject.json (94%) rename cssfinder/examples/{proj/proj_proj.mtx => SBiPa_json/projection.mtx} (100%) rename cssfinder/examples/{proj/proj_in.mtx => SBiPa_json/state.mtx} (100%) diff --git a/assets/profiling/5qubits_prof/cssfproject.py b/assets/profiling/5qubits_prof/cssfproject.py deleted file mode 100644 index 1001555..0000000 --- a/assets/profiling/5qubits_prof/cssfproject.py +++ /dev/null @@ -1,85 +0,0 @@ -# noqa: INP001 -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Contains example of dynamically generated configuration. - -In fact, what this script does, it simply uses cssfinder as library to perform -calculations. This approach allows us to determine list of tasks without typical -limitations of static files. - -""" - -from __future__ import annotations - -from pathlib import Path - -from pydantic import EmailStr - -from cssfinder.api import run_project -from cssfinder.cssfproject import ( - AlgoMode, - Backend, - BackendCfg, - CSSFProject, - GilbertCfg, - Meta, - Precision, - RuntimeCfg, - SemVerStr, - State, - Task, -) - -TASKS = [ - Task( - gilbert=GilbertCfg( - mode=AlgoMode.FSnQd, - backend=BackendCfg( - name=Backend.NumPy, - precision=Precision.SINGLE, - ), - state=State(file=path.as_posix()), - runtime=RuntimeCfg( - visibility=0.4, - max_epochs=10, - iters_per_epoch=1000, - max_corrections=100, - ), - ), - ) - for path in Path(__file__).parent.glob("*_in.mtx") -] - -project = CSSFProject( - meta=Meta( - author="Example", - email=EmailStr("example@example.com"), - name="5qubits_prof", - description="Project description", - version=SemVerStr("1.0.0"), - ), - tasks=TASKS, - project_path=Path(__file__).parent / "cssfproject.json", -) - - -run_project(project) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 8ad2d51..8ea8575 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -25,6 +25,7 @@ import logging import shutil +import traceback import webbrowser from dataclasses import dataclass from pathlib import Path @@ -77,7 +78,7 @@ def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) logging.getLogger("numba").setLevel(logging.ERROR) - logging.info("CSSFinder started at %r", pendulum.now()) + logging.info("CSSFinder started at %s", pendulum.now().isoformat(sep=" ")) if verbose >= VERBOSITY_INFO: print( @@ -295,17 +296,30 @@ def _examples_clone( destination = Path.cwd() if out is None else Path(out).expanduser().resolve() example = _select_example(sha, name) + try: + project = example.get_project() + except ProjectFileNotFoundError as exc: + logging.debug(traceback.format_exc()) + logging.critical( + "Sorry but example is broken. (%s)", exc.__class__.__qualname__ + ) + raise SystemExit(ExitCode.BROKEN_EXAMPLE) from exc rich.print( - f"Found example {example.name!r}, {example.get_project().meta.author!r}, " + f"Found example {example.name!r}, {project.meta.author!r}, " f"{example.get_sha256().hexdigest()[:8]!r}" ) destination_project_folder = _get_validated_destination( destination, example, force_overwrite=force_overwrite ) + try: + example.clone(destination) + + except FileNotFoundError as exc: + logging.critical(str(exc)) + raise SystemExit(ExitCode.PROJECT_NOT_FOUND) from exc - example.clone(destination) if do_open_explorer: open_file_explorer(destination_project_folder) if do_open_terminal: @@ -343,15 +357,15 @@ def _select_example(sha: Optional[str], name: Optional[str]) -> examples.Example if name is not None: try: example = examples.Example.select_by_name(name) - except KeyError as exc: - logging.critical("Example with name %r not found.", sha) + except examples.ExampleNotFoundError as exc: + logging.critical("%s", exc) raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc elif sha is not None: try: example = examples.Example.select_by_sha256(sha) - except KeyError as exc: - logging.critical("Example with sha %r not found.", sha) + except examples.ExampleNotFoundError as exc: + logging.critical("%s", exc) raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc else: diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index e5110bd..2f09a00 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -27,6 +27,7 @@ from __future__ import annotations import fnmatch +import importlib.util import json import logging from pathlib import Path @@ -41,7 +42,23 @@ if TYPE_CHECKING: from typing_extensions import Self -PROJECT_FILE_NAME: str = "cssfproject.json" + +def project_file_path(directory_or_file: Path) -> Path: + """Return path to project file (JSON/PY).""" + if directory_or_file.is_file(): + return directory_or_file + + json_file = directory_or_file / "cssfproject.json" + + if directory_or_file.is_dir() and json_file.exists(): + return json_file + + py_file = directory_or_file / "cssfproject.py" + + if directory_or_file.is_dir() and py_file.exists(): + return py_file + + raise FileNotFoundError(directory_or_file) class CSSFProject(CommonBaseModel): @@ -70,12 +87,15 @@ def __init__( """ super().__init__(meta=meta, tasks=tasks) + if not isinstance(project_path, Path): - self._project_path = Path(project_path).expanduser().resolve() + project_path = Path(project_path) - assert isinstance(project_path, Path) self._project_path = project_path.expanduser().resolve() + if not self._project_path.exists(): + raise FileNotFoundError(self._project_path) + self.bind() @validator("tasks", pre=True, always=True) @@ -109,10 +129,7 @@ def bind(self) -> None: @property def project_file(self) -> Path: """Path to `cssfproject.json` file.""" - if self._project_path.name == PROJECT_FILE_NAME: - return self._project_path - - return self._project_path / PROJECT_FILE_NAME + return project_file_path(self._project_path) @property def project_directory(self) -> Path: @@ -152,18 +169,24 @@ def load_project(cls, file_or_directory: str | Path) -> Self: file_or_directory = Path(file_or_directory).expanduser().resolve() # When points to directory, dir must contain cssfproject.json file - if not file_or_directory.name.endswith(".json") and file_or_directory.is_dir(): - file_or_directory /= PROJECT_FILE_NAME - project_path = file_or_directory + project_path = project_file_path(file_or_directory) + + if project_path.suffix == ".json": + return cls._load_json_project(project_path) + + if project_path.suffix == ".py": + return cls._load_py_cssfproject(project_path) - else: - project_path = file_or_directory + msg = f"Unknown project format {project_path.suffix} of project {project_path}" + raise FileNotFoundError(msg) + @classmethod + def _load_json_project(cls, project_path: Path) -> Self: logging.debug("Resolved project path to %r", project_path.as_posix()) try: content = project_path.read_text(encoding="utf-8") except FileNotFoundError as exc: - error_message = f"Make sure you path is correct: {project_path!r}" + error_message = f"Make sure you path is correct: {project_path}" raise ProjectFileNotFoundError(error_message) from exc try: @@ -178,6 +201,36 @@ def load_project(cls, file_or_directory: str | Path) -> Self: project = cls(**content, project_path=project_path) return project + @classmethod + def _load_py_cssfproject(cls, project_path: Path) -> Self: + spec = importlib.util.spec_from_file_location( + project_path.name[:-3], project_path.as_posix() + ) + if spec is None or spec.loader is None: + msg = f"Failed to load project file {project_path}" + raise ImportError(msg) + + project_module = importlib.util.module_from_spec(spec) + spec.loader.exec_module(project_module) + + project_object = getattr(project_module, "__project__", None) + + if project_object is None: + msg = ( + "Missing '__project__' field containing CSSFProject object.\n" + f"From {project_path}." + ) + raise ImportError(msg) + + if not isinstance(project_object, cls): + msg = ( + "Incorrect object in '__project__' field, should contain " + f"CSSFProject object.\nFrom {project_path}." + ) + + assert isinstance(project_object, cls) + return project_object + def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: """Select all tasks matching list of patterns.""" if patterns is None: diff --git a/cssfinder/enums.py b/cssfinder/enums.py index 7cf6f5f..b85d646 100644 --- a/cssfinder/enums.py +++ b/cssfinder/enums.py @@ -51,8 +51,11 @@ class NoMatchingEnumValueError(AttributeError): class ExitCode: """Enumeration of standardized CSSFinder exit codes.""" - EXAMPLE_SHA_NOR_NAME_GIVEN = 67465 - EXAMPLE_WITH_NAME_NOT_FOUND = 67470 - EXAMPLE_WITH_SHA_NOT_FOUND = 67475 + BROKEN_EXAMPLE = 133 - EXAMPLE_DESTINATION_ALREADY_EXISTS = 67480 + EXAMPLE_SHA_NOR_NAME_GIVEN = 134 + EXAMPLE_WITH_NAME_NOT_FOUND = 135 + EXAMPLE_WITH_SHA_NOT_FOUND = 136 + + EXAMPLE_DESTINATION_ALREADY_EXISTS = 137 + PROJECT_NOT_FOUND = 138 diff --git a/cssfinder/examples/5qubits/5qubits_in.mtx b/cssfinder/examples/5qubits_json/5qubits_in.mtx similarity index 100% rename from cssfinder/examples/5qubits/5qubits_in.mtx rename to cssfinder/examples/5qubits_json/5qubits_in.mtx diff --git a/cssfinder/examples/5qubits/cssfproject.json b/cssfinder/examples/5qubits_json/cssfproject.json similarity index 91% rename from cssfinder/examples/5qubits/cssfproject.json rename to cssfinder/examples/5qubits_json/cssfproject.json index 9eff904..4db6d18 100644 --- a/cssfinder/examples/5qubits/cssfproject.json +++ b/cssfinder/examples/5qubits_json/cssfproject.json @@ -2,9 +2,9 @@ "version": "1.0.0", "meta": { "author": "Krzysztof Wiśniewski; Marcin Wieśniak", - "email": "example@example.com", + "email": "argmaster.world@gmail.com", "name": "5qubits", - "description": "Project description", + "description": "Example of project configuration for 'Full separability of an n-quDit state' mode.", "version": "1.0.0" }, "tasks": { diff --git a/cssfinder/examples/5qubits_py/5qubits_in.mtx b/cssfinder/examples/5qubits_py/5qubits_in.mtx new file mode 100644 index 0000000..c8abc16 --- /dev/null +++ b/cssfinder/examples/5qubits_py/5qubits_in.mtx @@ -0,0 +1,531 @@ +%%MatrixMarket matrix array float symmetric +%Created with the Wolfram Language : www.wolfram.com +32 32 +0.25 +0 +0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 diff --git a/cssfinder/examples/5qubits/cssfproject.py b/cssfinder/examples/5qubits_py/cssfproject.py similarity index 83% rename from cssfinder/examples/5qubits/cssfproject.py rename to cssfinder/examples/5qubits_py/cssfproject.py index 3a61855..f742059 100644 --- a/cssfinder/examples/5qubits/cssfproject.py +++ b/cssfinder/examples/5qubits_py/cssfproject.py @@ -69,17 +69,18 @@ for path in Path(__file__).parent.glob("*_in.mtx") ] - -run_project( - CSSFProject( - meta=Meta( - author="Example", - email=EmailStr("example@example.com"), - name="5qubits", - description="Project description", - version=SemVerStr("1.0.0"), - ), - tasks=TASKS, - project_path=Path(__file__).parent / "cssfproject.json", +__project__ = CSSFProject( + meta=Meta( + author="Krzysztof Wiśniewski; Marcin Wieśniak", + email=EmailStr("argmaster.world@gmail.com"), + name="5qubits", + description="Example of project configuration for 'Full separability of an " + "n-quDit state' mode.", + version=SemVerStr("1.0.0"), ), + tasks=TASKS, + project_path=__file__, ) + +if __name__ == "__main__": + run_project(__project__) diff --git a/cssfinder/examples/GHZ3/GHZ3_in.mtx b/cssfinder/examples/GHZ3_json/GHZ3_in.mtx similarity index 100% rename from cssfinder/examples/GHZ3/GHZ3_in.mtx rename to cssfinder/examples/GHZ3_json/GHZ3_in.mtx diff --git a/cssfinder/examples/GHZ3/cssfproject.json b/cssfinder/examples/GHZ3_json/cssfproject.json similarity index 92% rename from cssfinder/examples/GHZ3/cssfproject.json rename to cssfinder/examples/GHZ3_json/cssfproject.json index f8cfc1a..a6d620b 100644 --- a/cssfinder/examples/GHZ3/cssfproject.json +++ b/cssfinder/examples/GHZ3_json/cssfproject.json @@ -2,9 +2,9 @@ "version": "1.0.0", "meta": { "author": "Krzysztof Wiśniewski; Marcin Wieśniak", - "email": "example@example.com", + "email": "argmaster.world@gmail.com", "name": "GHZ3", - "description": "Project description", + "description": "Example of project configuration for 'Genuine 3-partite entanglement of a 3-quDit state' mode.", "version": "1.0.0" }, "tasks": { diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_0.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_0_0.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_0.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_0_0.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_1.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_0_1.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_0_1.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_0_1.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_0.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_0.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_0.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_0.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_1.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_1.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_1.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_1.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_2.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_2.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_2.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_2.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_3.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_3.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_3.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_3.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_4.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_4.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_4.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_4.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_5.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_5.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_5.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_5.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_6.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_6.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_6.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_6.mtx diff --git a/cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_7.mtx b/cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_7.mtx similarity index 100% rename from cssfinder/examples/GHZ3/symmetries/GHZ3_sym_1_7.mtx rename to cssfinder/examples/GHZ3_json/symmetries/GHZ3_sym_1_7.mtx diff --git a/cssfinder/examples/GHZ4/GHZ4_in.mtx b/cssfinder/examples/GHZ4_json/GHZ4_in.mtx similarity index 100% rename from cssfinder/examples/GHZ4/GHZ4_in.mtx rename to cssfinder/examples/GHZ4_json/GHZ4_in.mtx diff --git a/cssfinder/examples/GHZ4/cssfproject.json b/cssfinder/examples/GHZ4_json/cssfproject.json similarity index 85% rename from cssfinder/examples/GHZ4/cssfproject.json rename to cssfinder/examples/GHZ4_json/cssfproject.json index 32c6df5..4ab8fa9 100644 --- a/cssfinder/examples/GHZ4/cssfproject.json +++ b/cssfinder/examples/GHZ4_json/cssfproject.json @@ -2,9 +2,9 @@ "version": "1.0.0", "meta": { "author": "Krzysztof Wiśniewski; Marcin Wieśniak", - "email": "example@example.com", + "email": "argmaster.world@gmail.com", "name": "5qubits", - "description": "Project description", + "description": "Example of project configuration for 'Genuine 4-partite entanglement of a 4-quDit state' mode.", "version": "1.0.0" }, "execution": { diff --git a/cssfinder/examples/proj/cssfproject.json b/cssfinder/examples/SBiPa_json/cssfproject.json similarity index 94% rename from cssfinder/examples/proj/cssfproject.json rename to cssfinder/examples/SBiPa_json/cssfproject.json index 02aa11d..81fbf12 100644 --- a/cssfinder/examples/proj/cssfproject.json +++ b/cssfinder/examples/SBiPa_json/cssfproject.json @@ -2,7 +2,7 @@ "version": "1.0.0", "meta": { "author": "Krzysztof Wiśniewski; Marcin Wieśniak", - "email": "example@example.com", + "email": "argmaster.world@gmail.com", "name": "5qubits", "description": "Project description", "version": "1.0.0" @@ -25,7 +25,7 @@ "max_corrections": 1000 }, "state": { - "file": "{project.project_directory}/proj_in.mtx", + "file": "{project.project_directory}/state.mtx", "depth": 3, "quantity": 3 }, @@ -76,7 +76,7 @@ }, "resources": { "symmetries": null, - "projection": "{project.project_directory}/proj_proj.mtx" + "projection": "{project.project_directory}/projection.mtx" } } } diff --git a/cssfinder/examples/proj/proj_proj.mtx b/cssfinder/examples/SBiPa_json/projection.mtx similarity index 100% rename from cssfinder/examples/proj/proj_proj.mtx rename to cssfinder/examples/SBiPa_json/projection.mtx diff --git a/cssfinder/examples/proj/proj_in.mtx b/cssfinder/examples/SBiPa_json/state.mtx similarity index 100% rename from cssfinder/examples/proj/proj_in.mtx rename to cssfinder/examples/SBiPa_json/state.mtx diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index 321ee4a..dd38e34 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -43,23 +43,15 @@ class Example(Enum): """Enumeration of available examples.""" - e5qubits = "5qubits" - GHZ3 = "GHZ3" - GHZ4 = "GHZ4" - proj = "proj" - - @property - def folder_name(self) -> str: - """Return name of project folder.""" - return self.value - - def get_path(self) -> Path: - """Return path to directory containing example.""" - return EXAMPLES_DIR / self.value + e5qubits_json = "5qubits_json" + e5qubits_py = "5qubits_py" + GHZ3_json = "GHZ3_json" + GHZ4_json = "GHZ4_json" + SBiPa_json = "SBiPa_json" def get_sha256(self) -> hashlib._Hash: # noqa: SLF001 """Calculate and return SHA-256 of example project file.""" - source = self.get_path() / "cssfproject.json" + source = self.get_project().project_file content = source.read_bytes() return hashlib.sha256(content) @@ -67,28 +59,47 @@ def get_project(self) -> CSSFProject: """Return project object from example.""" return CSSFProject.load_project(self.get_path()) + def get_path(self) -> Path: + """Return path to directory containing example.""" + return EXAMPLES_DIR / self.value + + @property + def folder_name(self) -> str: + """Return name of project folder.""" + return self.value + @classmethod def get_info_table(cls) -> Table: """Create rich Table object containing information about available examples.""" table = Table(title="Available examples.", show_lines=True) table.add_column("Name", justify="right", no_wrap=True, style="deep_sky_blue1") table.add_column("SHA", justify="center", no_wrap=True) - table.add_column("Author", justify="center", no_wrap=True) + table.add_column("Author", justify="center", no_wrap=False) table.add_column("Version", justify="center", no_wrap=True) table.add_column("Tasks", justify="center", no_wrap=True) - table.add_column("Path", justify="left", no_wrap=False, style="green") + table.add_column("Description", justify="left", no_wrap=False, style="green") for entry in cls: - project = entry.get_project() - - table.add_row( - entry.value, - entry.get_sha256().hexdigest()[:8], - project.meta.author, - project.meta.version, - f"{len(project.tasks)}", - entry.get_path().as_posix(), - ) + try: + project = entry.get_project() + + table.add_row( + entry.value, + entry.get_sha256().hexdigest()[:8], + project.meta.author, + project.meta.version, + f"{len(project.tasks)}", + project.meta.description, + ) + except FileNotFoundError: + table.add_row( + entry.value, + "---", + "Broken", + "---", + "---", + "---", + ) return table @@ -99,8 +110,8 @@ def select_by_name(cls, name: str) -> Self: if example.value == name: return example - msg = f"Example with name {name!r} not found." - raise KeyError(msg) + msg = f"Example with name {name} not found." + raise ExampleNotFoundError(msg) @classmethod def select_by_sha256(cls, sha: str) -> Self: @@ -110,7 +121,7 @@ def select_by_sha256(cls, sha: str) -> Self: return example msg = f"Example with sha {sha!r} not found." - raise KeyError(msg) + raise ExampleNotFoundError(msg) def clone(self, dest: Path) -> None: """Clone project folder to different destination.""" @@ -129,3 +140,7 @@ def clone(self, dest: Path) -> None: shutil.copytree(file.as_posix(), (dest_dir / relative_path).as_posix()) else: shutil.copy(file.as_posix(), (dest_dir / relative_path).as_posix()) + + +class ExampleNotFoundError(KeyError): + """Raised when example is not found.""" diff --git a/test/test_reports/base.py b/test/test_reports/base.py index 8041c84..c96128d 100644 --- a/test/test_reports/base.py +++ b/test/test_reports/base.py @@ -37,7 +37,7 @@ class ReportTestBase(SetupRunProjectMixin): """Validate report behavior.""" - PROJECT_PATH = Example.e5qubits.get_path() + PROJECT_PATH = Example.e5qubits_json.get_path() TEST_TASK_NAME: str = "test_fsnqd_5qubits" REPORT_TYPE: ReportType diff --git a/test/test_system/test_fsnqd.py b/test/test_system/test_fsnqd.py index 6c1471c..337b977 100644 --- a/test/test_system/test_fsnqd.py +++ b/test/test_system/test_fsnqd.py @@ -31,7 +31,7 @@ class Test_FSnQd(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of FSnQd mode of Gilbert algorithm.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 - PROJECT_PATH = Example.e5qubits.get_path() + PROJECT_PATH = Example.e5qubits_json.get_path() TEST_TASK_NAME: str = "test_fsnqd_5qubits" OUT_STATE_ROW_COUNT: int = 32 diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index 63b54dc..e7c52ca 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -31,7 +31,7 @@ class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of SBiPa mode of Gilbert algorithm.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 - PROJECT_PATH = Example.proj.get_path() + PROJECT_PATH = Example.SBiPa_json.get_path() TEST_TASK_NAME: str = "test_sbipa_proj" OUT_STATE_ROW_COUNT: int = 9 @@ -47,7 +47,7 @@ class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readabilit """Test behavior of SBiPa mode of Gilbert algorithm with projections.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 - PROJECT_PATH = Example.proj.get_path() + PROJECT_PATH = Example.SBiPa_json.get_path() TEST_TASK_NAME: str = "test_sbipa_proj_with_projection" OUT_STATE_ROW_COUNT: int = 9 From 85afafaaa038aa042d3587392917649f2ef59950 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 22:38:06 +0100 Subject: [PATCH 124/227] Add automatic priority elevation --- cssfinder/api.py | 72 +++-- cssfinder/crossplatform.py | 82 +++++- cssfinder/cssfproject.py | 2 +- cssfinder/examples/__init__.py | 2 +- cssfinder/io/matrix.py | 1 + cssfinder/log.py | 2 +- poetry.lock | 467 ++++++++++++++++++++++++++++++++- pyproject.toml | 2 + test/test_system/base.py | 1 - 9 files changed, 598 insertions(+), 33 deletions(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index 39001be..09a03b1 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -23,10 +23,14 @@ from __future__ import annotations import logging +import os from typing import TYPE_CHECKING, Iterable +import psutil + from cssfinder.algorithm.gilbert import Gilbert from cssfinder.algorithm.mode_util import ModeUtil +from cssfinder.crossplatform import IoPriority, Priority, set_priority from cssfinder.cssfproject import CSSFProject, GilbertCfg, Task from cssfinder.io.gilbert_io import GilbertIO from cssfinder.reports.manager import ReportManager @@ -72,6 +76,18 @@ def run_project( def run_task(task: Task, *, is_debug: bool = False) -> None: """Run task until completed.""" + try: + set_priority(os.getpid(), Priority.REALTIME, IoPriority.HIGH) + except (OSError, psutil.AccessDenied): + logging.warning( + "Failed to elevate process priority. It can negatively affect program " + "performance if there are more programs running in background. " + "To allow automated priority elevation run this program as super user. " + "You can change priority manually for process PID %r.", + os.getpid(), + stack_info=False, + ) + if task.gilbert: run_gilbert(task.gilbert, task.task_output_directory, is_debug=is_debug) @@ -85,29 +101,42 @@ def run_gilbert( """Run Gilbert algorithm part of task.""" asset_io = GilbertIO() - task_output_directory.mkdir(0o764, parents=True, exist_ok=True) + task_output_directory.mkdir(0o777, parents=True, exist_ok=True) + logging.debug("Created directory: %r", task_output_directory.as_posix()) algorithm = create_gilbert(config, asset_io, is_debug=is_debug) + logging.warning("Task %r started.", config.task_name) + for epoch_index in algorithm.run( max_epochs=config.runtime.max_epochs, iterations_per_epoch=config.runtime.iters_per_epoch, max_corrections=config.runtime.max_corrections, ): - logging.info( - "Executing epoch %r / %r (%.1f%%) - corrections: %r best: %r", - epoch_index + 1, - config.runtime.max_epochs, - ((epoch_index + 1) / config.runtime.max_epochs) * 100, - algorithm.get_corrections_count(), - algorithm.get_corrections()[-1][2] - if algorithm.get_corrections_count() > 0 - else None, - ) - asset_io.dump_state(algorithm.get_state(), config.output_state_file) - asset_io.dump_corrections( - algorithm.get_corrections(), config.output_corrections_file - ) + if corrections_count := algorithm.get_corrections_count(): + corrections = algorithm.get_corrections() + state = algorithm.get_state() + + logging.info( + "Executing epoch %r / %r (%.1f%%) - corrections: %r best: %r", + epoch_index + 1, + config.runtime.max_epochs, + ((epoch_index + 1) / config.runtime.max_epochs) * 100, + corrections_count, + corrections[-1][2], + ) + asset_io.dump_state(state, config.output_state_file) + asset_io.dump_corrections(corrections, config.output_corrections_file) + + else: + logging.info( + "Executing epoch %r / %r (%.1f%%) - no corrections.", + epoch_index + 1, + config.runtime.max_epochs, + ((epoch_index + 1) / config.runtime.max_epochs) * 100, + ) + + logging.warning("Task %r finished.", config.task_name) def create_gilbert( @@ -137,14 +166,27 @@ def create_gilbert( if state_config.is_predefined_dimensions(): depth = state_config.get_depth() quantity = state_config.get_quantity() + logging.info("Using fixed dimensions depth=%r quantity=%r", depth, quantity) else: dimensions = ModeUtil.new(config.mode).get_dimensions(initial_state) depth = dimensions.depth quantity = dimensions.quantity + logging.info("Deduced dimensions depth=%r quantity=%r", depth, quantity) symmetries = asset_io.load_symmetries(config.get_resources().symmetries) + if symmetries: + logging.info("Loaded symmetries:") + for i, row in enumerate(symmetries): + logging.info("Row %r: %r", i, [repr(sym.shape) for sym in row]) + else: + logging.info("No symmetries provided.") + projection = asset_io.load_projection(config.get_resources().projection) + if projection: + logging.info("Loaded projection: %r", projection.shape) + else: + logging.info("No projection provided.") algorithm = Gilbert( initial=initial_state, diff --git a/cssfinder/crossplatform.py b/cssfinder/crossplatform.py index 51fefd5..af1a7f4 100644 --- a/cssfinder/crossplatform.py +++ b/cssfinder/crossplatform.py @@ -28,6 +28,8 @@ from enum import Enum from typing import TYPE_CHECKING, Any +import psutil + if TYPE_CHECKING: from pathlib import Path @@ -46,9 +48,12 @@ def _missing_(cls, value: Any) -> System: # noqa: ARG003 SYSTEM = System(platform.system()) +IS_WIN32 = System.Win32 == SYSTEM +IS_LINUX = System.Linux == SYSTEM +IS_MAC = System.MacOS == SYSTEM -if System.Win32 == SYSTEM: +if IS_WIN32: def open_file_explorer(path: Path) -> None: """Open file explorer application specific to platform.""" @@ -58,7 +63,7 @@ def open_terminal(path: Path) -> None: """Open terminal application specific to platform.""" subprocess.Popen(["cmd", "/K", f"cd /D {path}"]) -elif System.MacOS == SYSTEM: +elif IS_MAC: def open_file_explorer(path: Path) -> None: """Open file explorer application specific to platform.""" @@ -68,7 +73,7 @@ def open_terminal(path: Path) -> None: """Open terminal application specific to platform.""" subprocess.Popen(["open", "-a", "Terminal", path]) -elif System.Linux == SYSTEM: +elif IS_LINUX: def open_file_explorer(path: Path) -> None: """Open file explorer application specific to platform.""" @@ -79,14 +84,67 @@ def open_terminal(path: Path) -> None: terminal = os.environ.get("TERMINAL", "x-terminal-emulator") subprocess.Popen([terminal, "--working-directory", str(path)]) -elif System.Other == SYSTEM: - def open_file_explorer(path: Path) -> None: # noqa: ARG001 - """Open file explorer application specific to platform.""" - msg = f"Unsupported platform: {platform.system()}" - raise ValueError(msg) +if System.Win32 == SYSTEM: - def open_terminal(path: Path) -> None: # noqa: ARG001 - """Open terminal application specific to platform.""" - msg = f"Unsupported platform: {platform.system()}" - raise ValueError(msg) + class Priority(Enum): + """Process priority constants.""" + + IDLE = psutil.IDLE_PRIORITY_CLASS + BELOW_NORMAL = psutil.BELOW_NORMAL_PRIORITY_CLASS + NORMAL = psutil.NORMAL_PRIORITY_CLASS + ABOVE_NORMAL = psutil.ABOVE_NORMAL_PRIORITY_CLASS + HIGH = psutil.HIGH_PRIORITY_CLASS + REALTIME = psutil.REALTIME_PRIORITY_CLASS + + class IoPriority(Enum): + """Process I/O niceness.""" + + HIGH = psutil.IOPRIO_HIGH + NORMAL = psutil.IOPRIO_NORMAL + LOW = psutil.IOPRIO_LOW + NONE = psutil.IOPRIO_VERYLOW + +elif System.Linux == SYSTEM or System.MacOS == SYSTEM: + + class Priority(Enum): # type: ignore[no-redef] + """Process priority constants.""" + + IDLE = 19 + BELOW_NORMAL = 10 + NORMAL = 0 + ABOVE_NORMAL = -7 + HIGH = -15 + REALTIME = -20 + + class IoPriority(Enum): # type: ignore[no-redef] + """Process I/O niceness.""" + + HIGH = psutil.IOPRIO_CLASS_RT + NORMAL = psutil.IOPRIO_CLASS_BE + LOW = psutil.IOPRIO_CLASS_IDLE + NONE = psutil.IOPRIO_CLASS_NONE + + +def set_priority(pid: int, priority: Priority, io_priority: IoPriority) -> None: + """Set process priority. Implemented for win32, linux and macOS, noop elsewhere. + + Can raise psutil.AccessDenied + + """ + process = psutil.Process(pid) + process.nice(priority.value) + + if IS_MAC: + return + + if IS_LINUX: + if io_priority == IoPriority.HIGH: + process.ionice(io_priority.value, value=0) + return + + if io_priority == IoPriority.NORMAL: + process.ionice(io_priority.value, value=0) + + if IS_WIN32: + process.ionice(io_priority.value) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 2f09a00..d1518c1 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -140,7 +140,7 @@ def project_directory(self) -> Path: def project_output_directory(self) -> Path: """Path to output directory for this project.""" directory = self.project_directory / "output" - directory.mkdir(0o764, parents=True, exist_ok=True) + directory.mkdir(0o777, parents=True, exist_ok=True) return directory @classmethod diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index dd38e34..662aef9 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -128,7 +128,7 @@ def clone(self, dest: Path) -> None: src = self.get_path() dest_dir = dest / src.name - dest_dir.mkdir(0o764, parents=True, exist_ok=True) + dest_dir.mkdir(0o777, parents=True, exist_ok=True) for file in src.iterdir(): relative_path = file.relative_to(src).as_posix() diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index c21e6a1..a4e414e 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -93,6 +93,7 @@ def dump( """Dump matrix to file from numpy array.""" if isinstance(dest, (str, Path)): file_path = Path(dest).with_suffix(self.matrix_format.value) + file_path.touch(0o777, exist_ok=True) with file_path.open("wb") as file: return self._dump(data, file) diff --git a/cssfinder/log.py b/cssfinder/log.py index 4b6a0ef..3e3df09 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -248,7 +248,7 @@ def _create_file_handler( max_log_files: int, ) -> logging.Handler: # Create logging directory before trying to put files there. - log_dir.mkdir(0o764, parents=True, exist_ok=True) + log_dir.mkdir(0o777, parents=True, exist_ok=True) log_file = log_dir / logger_name # If file already exists, logger may decide to start appending its logs to it, # which is not desired - preferably, one file for one session. diff --git a/poetry.lock b/poetry.lock index 559ecdb..3eaf078 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. 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+test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] + [[package]] name = "trove-classifiers" version = "2023.3.9" @@ -3146,4 +3609,4 @@ test = ["pytest"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "825655ede2a26c24d610d0306e03a4a2dd953a5275ac272e9a114cf1adf254a4" +content-hash = "860da55546d7ff1c2875a311c4b1c9be98c5d99e083a18fa95661fe6f3bcb59c" diff --git a/pyproject.toml b/pyproject.toml index f38f9d3..1f946d3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,6 +23,7 @@ jsonref = "^1.1.0" matplotlib = "^3.7.0" pandas = "^1.5.3" weasyprint = "^58.1" +psutil = "^5.9.4" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" @@ -40,6 +41,7 @@ poethepoet = "^0.18.1" poetry = "^1.3.2" jinja2 = "^3.1.2" ruff = "^0.0.254" +ipykernel = "^6.21.3" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" diff --git a/test/test_system/base.py b/test/test_system/base.py index 827e9b9..815c396 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -80,7 +80,6 @@ def setup_class(cls) -> None: shutil.copytree( cls.PROJECT_PATH.as_posix(), cls.get_project_directory().as_posix() ) - print(cls.get_project_directory()) run_project_from(cls.get_project_directory(), [cls.TEST_TASK_NAME]) From bdd25a2c8063707358fbbb3801f4b7e4a43d7851 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 22:47:34 +0100 Subject: [PATCH 125/227] Convert if block to callback logic in numpy backend --- cssfinder/algorithm/backend/numpy/base.py | 35 ++++++++++++----------- 1 file changed, 18 insertions(+), 17 deletions(-) diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py index d7a055d..3f19bea 100644 --- a/cssfinder/algorithm/backend/numpy/base.py +++ b/cssfinder/algorithm/backend/numpy/base.py @@ -27,7 +27,7 @@ import logging from types import MethodType -from typing import TYPE_CHECKING, Generic, Optional, TypeVar, cast +from typing import TYPE_CHECKING, Callable, Generic, Optional, TypeVar, cast import numpy as np import numpy.typing as npt @@ -58,6 +58,11 @@ class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): primary_t: type[PRIMARY] secondary_t: type[SECONDARY_co] + optimize_callback: Callable[ + [npt.NDArray[PRIMARY], npt.NDArray[PRIMARY], int, int, int], + npt.NDArray[PRIMARY], + ] + def __init__( # noqa: PLR0913 self, initial: npt.NDArray[np.complex128], @@ -96,6 +101,11 @@ def __init__( # noqa: PLR0913 self._visibility_reduced, ) + if self.mode == AlgoMode.FSnQd: + self.optimize_callback = self.impl.optimize_d_fs + elif self.mode == AlgoMode.SBiPa: + self.optimize_callback = self.impl.optimize_bs + if not self.is_debug: self.jit() @@ -217,22 +227,13 @@ def _update_state( # noqa: PLR0913 depth = self.depth quantity = self.quantity - if self.mode == AlgoMode.FSnQd: - alternative_state = self.impl.optimize_d_fs( - alternative_state, - self._visibility_reduced, - depth, - quantity, - epochs, - ) - elif self.mode == AlgoMode.SBiPa: - alternative_state = self.impl.optimize_bs( - alternative_state, - self._visibility_reduced, - depth, - quantity, - epochs, - ) + alternative_state = self.optimize_callback( + alternative_state, + self._visibility_reduced, + depth, + quantity, + epochs, + ) if self._symmetries: self._intermediate = self.impl.apply_symmetries( From 7443a3a1682dc18d711590af4bab70753f4fdf58 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 22:49:22 +0100 Subject: [PATCH 126/227] Add random implementation toggle --- scripts/gen_numpy_impl.py | 7 ++++--- scripts/templates/numpy.pyjinja2 | 24 ++++++++++++++++++++++++ 2 files changed, 28 insertions(+), 3 deletions(-) diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py index 0bb18e2..0d181c1 100644 --- a/scripts/gen_numpy_impl.py +++ b/scripts/gen_numpy_impl.py @@ -41,17 +41,18 @@ @click.option("--dest", default=DEFAULT_DEST, type=Path) @click.option("--disable-jit", is_flag=True, default=False) @click.option("--debug-dtype-checks", is_flag=True, default=False) -@click.option("--use-legacy-random", is_flag=True, default=False) +@click.option("--use-normal-random", is_flag=True, default=False) def main( dest: Path, *, disable_jit: bool, debug_dtype_checks: bool, - use_legacy_random: bool, + use_normal_random: bool, ) -> None: """Generate numpy precision backends from template.""" logging.warning("Option --disable-jit %r", disable_jit) logging.warning("Option --debug-dtype-checks %r", debug_dtype_checks) + logging.warning("Option --use-normal-random %r", use_normal_random) env = jinja2.Environment( loader=jinja2.FileSystemLoader(TEMPLATES_DIR.as_posix()), @@ -69,7 +70,7 @@ def main( complex=complex_, disable_jit=disable_jit, debug_dtype_checks=debug_dtype_checks, - use_legacy_random=use_legacy_random, + use_normal_random=use_normal_random, is_64bit="64" in floating, is_32bit="32" in floating, ) diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 index 2c89183..8ccb485 100644 --- a/scripts/templates/numpy.pyjinja2 +++ b/scripts/templates/numpy.pyjinja2 @@ -110,11 +110,23 @@ def product( {{ jit_nopython() }} def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: """Generate a random vector with Haar measure.""" + {% if use_normal_random %} + + real = np.random.normal(0, 1, depth) # noqa: NPY002 + imaginary = np.random.normal(0, 1, depth) # noqa: NPY002 + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + retval = real + 1j * imaginary + + {% else %} real = np.random.uniform(0, 1, depth) # noqa: NPY002 imag = np.random.uniform(0, 1, depth) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + {% endif %} + {% if is_32bit %} {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} {# as real * imag results in np.complex128 type. #} @@ -129,11 +141,23 @@ def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: {{ jit_nopython() }} def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: """Generate multiple random vectors with Haar measure in form of matrix.""" + {% if use_normal_random %} + + real = np.random.normal(0, 1, (quantity, depth)) # noqa: NPY002 + imaginary = np.random.normal(0, 1, (quantity, depth)) # noqa: NPY002 + # Complex128 is a correct type returned from this expression. + # Checked on numpy 1.23.5 + retval = real + 1j * imaginary + + {% else %} real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) + + {% endif %} + {% if is_32bit %} {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} {# as real * imag results in np.complex128 type. #} From e018d204f692104f801ca93af6999d8784681eac Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 22:50:30 +0100 Subject: [PATCH 127/227] Add performance results --- docs/performance/single_task/create_plot.py | 55 +++++++++++++++++++ docs/performance/single_task/performance.jpg | Bin 0 -> 84218 bytes docs/performance/single_task/result.csv | 12 ++++ docs/performance/single_task/run_perf.sh | 10 ++++ 4 files changed, 77 insertions(+) create mode 100644 docs/performance/single_task/create_plot.py create mode 100644 docs/performance/single_task/performance.jpg create mode 100644 docs/performance/single_task/result.csv create mode 100755 docs/performance/single_task/run_perf.sh diff --git a/docs/performance/single_task/create_plot.py b/docs/performance/single_task/create_plot.py new file mode 100644 index 0000000..de1d6d4 --- /dev/null +++ b/docs/performance/single_task/create_plot.py @@ -0,0 +1,55 @@ +# noqa: INP001 D100 +from __future__ import annotations + +import pandas as pd +from matplotlib import pyplot as plt + +data = pd.read_csv("perf.csv") +data = (data / data["Original"].mean().max()) * 100 + +print(data) + +fig = plt.figure(figsize=(10, 8), dpi=100) +fig.subplots_adjust(left=0.25, top=0.85) +axes = plt.subplot() + +axes.barh( + data.columns, + data.mean(), + color=[ + "#1f6acc" if value > data.mean().min() else "#24a348" for value in data.mean() + ], + height=0.7, +) +axes.errorbar( + data.mean(), + data.columns, + xerr=data.std(), + ls="None", + color="black", + linewidth=1, + capsize=6, +) + +CENTER = 50 + +for i, name in enumerate(data.columns): + plt.text( + x=25 if data[name].min() > CENTER else 75, + y=i, + s=f"{data[name].mean():.1f}%", + ha="center", + va="center", + bbox={"facecolor": "white", "alpha": 0.8}, + ) + +plt.grid() +plt.title( + "Gilbert\n( 5qubits | 32x32 state | FS mode | 2M iters | 1K corrs )", + fontsize=18, + pad=20, +) +plt.xlabel("Work time [% of original]", fontsize=14, labelpad=20) +plt.ylabel("Backend configuration", fontsize=14, labelpad=20) + 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QfAm)S@ATOs`1Q;G0VZ__(EtDd literal 0 HcmV?d00001 diff --git a/docs/performance/single_task/result.csv b/docs/performance/single_task/result.csv new file mode 100644 index 0000000..28f12a8 --- /dev/null +++ b/docs/performance/single_task/result.csv @@ -0,0 +1,12 @@ +NumPy+F64+JIT+N,NumPy+F64+JIT+U,NumPy+F64+no-JIT+N,NumPy+F64+no-JIT+U,NumPy+F32+JIT+N,NumPy+F32+JIT+U,NumPy+F32+no-JIT+N,F32+no-JIT+U,Original +66.0035512530012,59.39569614499851,72.83464656800061,78.46530800600158,57.84997295699941,50.40716121999867,65.23712274799982,74.23396960899845,99.18432421200123 +59.60181050599931,58.84865575999902,73.5153271909985,77.71926460000032,51.11572317100217,51.68095935199926,65.87932215699766,69.05380190099822,96.2177372039987 +58.58779456499906,60.17799521699999,72.24036296800114,76.48943394099842,53.125375741001335,50.68712085600055,63.68150014099956,70.62762129800103,97.91489527099839 +58.85952322599769,57.17545549600072,70.94913329599876,74.59476733200063,50.12338968599943,49.94596497299972,66.09807841099973,70.37529863600139,97.48743011400074 +59.89408369100056,58.3572630689996,74.2454887490021,79.94686398400154,49.5616678189981,50.0510958649993,64.05555223999909,68.61706293699899,94.26600755399704 +58.04629661000217,58.21017716800088,72.38337442599732,76.9450379689988,50.28825240899823,51.68989007699929,70.33481898300306,71.15092039799856,101.8261614740004 +57.98886710899751,59.62146471599954,73.5608682480015,75.75134339599754,49.72812420600167,48.78720945499845,64.00659244399867,74.3487572390004,96.49721431900252 +61.0834127249982,59.55863999400026,71.11316797299878,77.38796698200167,49.70765591500094,51.302157309000904,65.26153566400171,69.03941316600321,93.2333190160025 +57.56389836199742,58.61257242799911,76.03605217400036,81.51463679500011,49.46684633699988,50.70212174699918,65.3076346300004,73.16192999900159,96.29209193600036 +57.79408841199984,59.91734557000018,75.45678738900097,75.35742244300127,49.9262340230016,50.80911813900093,68.80818102799822,73.60895541399805,101.21788306000235 +59.31006175099901,60.77001634200133,73.72711820800032,78.0622101279987,49.07908849600062,49.51343664600063,66.63500067700079,68.83445203800147,96.97272199299914 diff --git a/docs/performance/single_task/run_perf.sh b/docs/performance/single_task/run_perf.sh new file mode 100755 index 0000000..f529315 --- /dev/null +++ b/docs/performance/single_task/run_perf.sh @@ -0,0 +1,10 @@ +#!/bin/bash +for i in {0..10..1} +do +echo "$i" + +./.venv/bin/cssfinder --debug project ./5qubits_json/ run -t main_double; cat ./log/cssfinder | grep -Po "(?:Elapsed time: )([0-9]*\.?[0-9]*)" >> double_no_jit_uniform.txt + +./.venv/bin/cssfinder --debug project ./5qubits_json/ run -t main_single; cat ./log/cssfinder | grep -Po "(?:Elapsed time: )([0-9]*\.?[0-9]*)" >> single_no_jit_uniform.txt + +done From fbfeefbdf9941300cc2ac86afbb55ae86ae70f40 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 23:03:46 +0100 Subject: [PATCH 128/227] Update word ignores and dictionary --- .vscode/dictionary.txt | 7 +++++++ .vscode/settings.json | 11 ++++++++++- 2 files changed, 17 insertions(+), 1 deletion(-) diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index 2193001..d5efd0a 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -15,7 +15,10 @@ figsize figwidth forceobj fsnqd +getpid iloc +ionice +IOPRIO isort isreal jsonref @@ -23,6 +26,7 @@ Krzysztof levelname libpangocairo looplift +Marcin matplotlib mmread mmwrite @@ -34,9 +38,11 @@ numba numpy offsetted pango +psutil pydantic pyplot pytest +qualname qubits redef savefig @@ -47,6 +53,7 @@ swapaxes tensordot tracebacks weasyprint +Wieśniak Wiśniewski xlabel ylabel diff --git a/.vscode/settings.json b/.vscode/settings.json index 8db58a7..660fefd 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -74,17 +74,26 @@ "python.analysis.completeFunctionParens": false, "python.analysis.useLibraryCodeForTypes": true, "cSpell.ignoreWords": [ + "VERYLOW", + "barh", "contourpy", + "corrs", "dateutil", "dnspython", + "errorbar", + "facecolor", + "fontsize", "fonttools", "idna", "kiwisolver", + "labelpad", + "linewidth", "llvmlite", "mdurl", "pygments", "pyparsing", "pytz", - "pytzdata" + "pytzdata", + "xerr" ] } From b04cb3f7b9b46bd659563f267431748464bc9375 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 23:17:36 +0100 Subject: [PATCH 129/227] Fix projection presence condition causing crash --- cssfinder/api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index 09a03b1..368b765 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -183,7 +183,7 @@ def create_gilbert( logging.info("No symmetries provided.") projection = asset_io.load_projection(config.get_resources().projection) - if projection: + if projection is not None: logging.info("Loaded projection: %r", projection.shape) else: logging.info("No projection provided.") From 7ced956a097ad50611085494e5fb5eeaf68b4c73 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 23:36:53 +0100 Subject: [PATCH 130/227] Fix IoPriority enum on MacOS --- cssfinder/crossplatform.py | 41 ++++++++++++++++++++++++++++---------- 1 file changed, 30 insertions(+), 11 deletions(-) diff --git a/cssfinder/crossplatform.py b/cssfinder/crossplatform.py index af1a7f4..f8d9f61 100644 --- a/cssfinder/crossplatform.py +++ b/cssfinder/crossplatform.py @@ -85,7 +85,7 @@ def open_terminal(path: Path) -> None: subprocess.Popen([terminal, "--working-directory", str(path)]) -if System.Win32 == SYSTEM: +if IS_WIN32: class Priority(Enum): """Process priority constants.""" @@ -97,15 +97,7 @@ class Priority(Enum): HIGH = psutil.HIGH_PRIORITY_CLASS REALTIME = psutil.REALTIME_PRIORITY_CLASS - class IoPriority(Enum): - """Process I/O niceness.""" - - HIGH = psutil.IOPRIO_HIGH - NORMAL = psutil.IOPRIO_NORMAL - LOW = psutil.IOPRIO_LOW - NONE = psutil.IOPRIO_VERYLOW - -elif System.Linux == SYSTEM or System.MacOS == SYSTEM: +elif IS_MAC or IS_LINUX: class Priority(Enum): # type: ignore[no-redef] """Process priority constants.""" @@ -117,6 +109,19 @@ class Priority(Enum): # type: ignore[no-redef] HIGH = -15 REALTIME = -20 + +if IS_WIN32: + + class IoPriority(Enum): + """Process I/O niceness.""" + + HIGH = psutil.IOPRIO_HIGH + NORMAL = psutil.IOPRIO_NORMAL + LOW = psutil.IOPRIO_LOW + NONE = psutil.IOPRIO_VERYLOW + +elif IS_LINUX: + class IoPriority(Enum): # type: ignore[no-redef] """Process I/O niceness.""" @@ -125,11 +130,25 @@ class IoPriority(Enum): # type: ignore[no-redef] LOW = psutil.IOPRIO_CLASS_IDLE NONE = psutil.IOPRIO_CLASS_NONE +elif IS_MAC: + + class IoPriority(Enum): # type: ignore[no-redef] + """Process I/O niceness. + + Not available on MacOS. + + """ + + HIGH = 0 + NORMAL = 1 + LOW = 2 + NONE = 3 + def set_priority(pid: int, priority: Priority, io_priority: IoPriority) -> None: """Set process priority. Implemented for win32, linux and macOS, noop elsewhere. - Can raise psutil.AccessDenied + Can raise psutil.AccessDenied. io_priority is noop on macOS. """ process = psutil.Process(pid) From f527c271573ac57f158eed53f57f0b9bef255417 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 19 Mar 2023 23:46:45 +0100 Subject: [PATCH 131/227] Pin poetry version in CI to 1.4.0 due to high error rate --- .github/workflows/code_quality.yaml | 4 ++-- .github/workflows/deploy_to_pypi.yaml | 4 ++-- .github/workflows/deploy_to_test_pypi.yaml | 4 ++-- .github/workflows/reports_tests.yaml | 4 ++-- .github/workflows/system_tests.yaml | 4 ++-- .github/workflows/type_check.yaml | 4 ++-- poetry.toml | 3 +++ 7 files changed, 15 insertions(+), 12 deletions(-) diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 7c54499..9da8bf1 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -55,10 +55,10 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies - run: poetry install --sync + run: poetry install --no-cache --sync - name: Run code quality checkers run: poetry run poe run-hooks diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index 6f03768..bf29ef7 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -26,10 +26,10 @@ jobs: architecture: "x64" - name: Install Poetry 📜 - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies 🗄️ - run: poetry install --sync + run: poetry install --no-cache --sync - name: Build distribution 📦 run: poetry run poe build diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index 21b3eed..cafe3f1 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -25,10 +25,10 @@ jobs: architecture: "x64" - name: Install Poetry 📜 - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies 🗄️ - run: poetry install --sync + run: poetry install --no-cache --sync - name: Bump Version for development 🔨 release run: | diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 1fd6059..8127c84 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -55,10 +55,10 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies - run: poetry install --sync + run: poetry install --no-cache --sync - name: Expect PDF reports fails (Windows|macOS) if: matrix.os == 'windows-latest' || matrix.os == 'macOS-latest' diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 80cf050..9aad6bd 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -55,10 +55,10 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies - run: poetry install --sync + run: poetry install --no-cache --sync - name: Generate debug numpy backend # This step generates numpy backend with all debug options enabled. diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 7cae78c..768bd4a 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -55,10 +55,10 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry + run: pip install poetry==1.4.0 - name: Install dependencies - run: poetry install --sync + run: poetry install --no-cache --sync - name: Test with pytest run: poetry run poe type-check diff --git a/poetry.toml b/poetry.toml index ab1033b..8273859 100644 --- a/poetry.toml +++ b/poetry.toml @@ -1,2 +1,5 @@ [virtualenvs] in-project = true + +[installer] +max-workers = 4 From 5202bf980176d7c122b0e3239e0003261d2ce51a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 20 Mar 2023 02:34:03 +0100 Subject: [PATCH 132/227] Implement backend loader --- cssfinder/algorithm/backend/__init__.py | 27 --- cssfinder/algorithm/backend/base.py | 7 +- cssfinder/algorithm/backend/loader.py | 179 +++++++++++++++++++ cssfinder/algorithm/gilbert.py | 8 +- cssfinder/cli.py | 12 ++ cssfinder/cssfproject.py | 14 +- cssfinder/examples/5qubits_py/cssfproject.py | 3 +- 7 files changed, 202 insertions(+), 48 deletions(-) create mode 100644 cssfinder/algorithm/backend/loader.py diff --git a/cssfinder/algorithm/backend/__init__.py b/cssfinder/algorithm/backend/__init__.py index 9b8549c..f8947c6 100644 --- a/cssfinder/algorithm/backend/__init__.py +++ b/cssfinder/algorithm/backend/__init__.py @@ -25,30 +25,3 @@ from __future__ import annotations - -from typing import TYPE_CHECKING - -from cssfinder.algorithm.backend.numpy.complex64 import NumPyC64 -from cssfinder.algorithm.backend.numpy.complex128 import NumPyC128 -from cssfinder.cssfproject import Backend, Precision - -if TYPE_CHECKING: - from cssfinder.algorithm.backend.base import BackendBase - - -def select(backend: Backend, precision: Precision) -> type[BackendBase]: - """Select one of the backends with fixed precision.""" - if backend == Backend.NumPy: - if precision == Precision.DOUBLE: - return NumPyC128 - if precision == Precision.SINGLE: - return NumPyC64 - - reason = ( - f"Backend {backend.name!r} with precision {precision.name!r} not supported." - ) - raise UnsupportedBackendError(reason) - - -class UnsupportedBackendError(Exception): - """Raised for unsupported backend type.""" diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index c268029..2ae226b 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -26,13 +26,13 @@ from __future__ import annotations -from typing import TYPE_CHECKING, TypeVar +from typing import TYPE_CHECKING, ClassVar, TypeVar if TYPE_CHECKING: import numpy as np import numpy.typing as npt - from cssfinder.cssfproject import AlgoMode, Backend, Precision + from cssfinder.cssfproject import AlgoMode BackendT = TypeVar("BackendT", bound="BackendBase") @@ -40,7 +40,8 @@ class BackendBase: """Gilbert algorithm backend (implementation).""" - backend_index: dict[tuple[Backend, Precision], type[BackendBase]] = {} + author: ClassVar[str] = "" + description: ClassVar[str] = "" def __init__( # noqa: PLR0913 self, diff --git a/cssfinder/algorithm/backend/loader.py b/cssfinder/algorithm/backend/loader.py new file mode 100644 index 0000000..c047671 --- /dev/null +++ b/cssfinder/algorithm/backend/loader.py @@ -0,0 +1,179 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Implementation of Gilbert algorithm backend loader.""" +from __future__ import annotations + +import importlib +import logging +import re +from functools import lru_cache +from importlib import metadata +from typing import TYPE_CHECKING, Any, ClassVar, Type + +from rich.table import Table + +from cssfinder.cssfproject import Precision + +if TYPE_CHECKING: + from typing_extensions import Self + + from cssfinder.algorithm.backend.base import BackendBase + + +LEN_KEY_TUPLE = 2 + + +class Loader: + """Backend loader class.""" + + BACKEND_NAME_REGEX: ClassVar[re.Pattern] = re.compile( + r"cssfinder(_|-)backend(_|-)[a-z0-9_\-]+", re.IGNORECASE + ) + + def __init__(self) -> None: + self.reload() + + def reload(self) -> None: + """Load all backends available in python environment. + + This is automatically called by constructor to load all backends. You can use it + to refresh list of loaded backends. + + """ + self.backends: dict[tuple[str, Precision], Type[BackendBase]] = {} + + for dist in importlib.import_module("pkg_resources").working_set: + if self.BACKEND_NAME_REGEX.match(dist.project_name) is None: + continue + + module_name = dist.project_name.replace("-", "_") + + module = importlib.import_module(module_name) + module_meta = metadata.metadata(module_name) + + export_backend = getattr(module, "export_backend", None) + + if export_backend is None: + continue + + backends = export_backend() + + if not isinstance(backends, dict): + logging.critical( + "Backend %r unsupported export format %r, expected .", + module_name, + type(backends), + ) + continue + + self._extend_backend_index(module_name, module_meta, backends) + + def _extend_backend_index( + self, + module_name: str, + module_meta: metadata.PackageMetadata, # type: ignore[name-defined] + backends: Any, + ) -> None: + for key, value in backends.items(): + if not isinstance(key, tuple) or len(key) != LEN_KEY_TUPLE: + logging.critical( + "Backend %r -> %r unsupported key format, expected key to be " + "tuple[str, Precision], got %r.", + module_name, + value, + key, + ) + continue + + name, precision = key + + if not isinstance(name, str): + logging.critical( + "Backend %r -> %r unsupported key format, expected key to be " + "tuple[str, Precision], got %r.", + module_name, + value, + key, + ) + continue + + if not isinstance(precision, Precision): + logging.critical( + "Backend %r -> %r unsupported key format, expected key to be " + "tuple[str, Precision], got %r.", + module_name, + value, + key, + ) + continue + + if len(getattr(value, "author", "")) == 0: + value.author = module_meta["Author"] + + self.backends[(name.casefold(), precision)] = value + + @classmethod + @lru_cache(maxsize=1) + def new(cls) -> Self: + """Get instance of Loader.""" + return cls() + + def get_backend(self, name: str, precision: Precision) -> Type[BackendBase]: + """Query set of available backends with provided properties and return backend + class if there is one meeting expectations. + """ + try: + return self.backends[(name.casefold(), precision)] + except KeyError as exc: + msg = ( + f"There is no backend with name={name!r} and precision=" + f"{precision.name!r} currently installed." + ) + raise BackendNotAvailableError(msg) from exc + + def get_rich_table(self) -> Table: + """Create rich Table object containing information about available backends.""" + table = Table(title="Available backends", show_lines=True) + table.add_column("Name", justify="right", no_wrap=True, style="deep_sky_blue1") + table.add_column("Precision", justify="center", no_wrap=True) + table.add_column("Author", justify="center", no_wrap=False) + table.add_column("Source", justify="left", no_wrap=False) + table.add_column("Description", justify="left", no_wrap=False) + + for key, value in self.backends.items(): + try: + (name, precision), cls = key, value + table.add_row( + name, + precision.name, + getattr(cls, "author", ""), + f"{cls.__module__}.{cls.__qualname__}", + getattr(cls, "description", ""), + ) + except (TypeError, ValueError): + logging.warning("Failed to display information about backed %r", value) + + return table + + +class BackendNotAvailableError(KeyError): + """Raised when backend with specified features can not be found.""" diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 3b7aa00..8f04e38 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -27,13 +27,13 @@ from time import perf_counter from typing import TYPE_CHECKING, Iterable -from cssfinder.algorithm import backend as _backend +from cssfinder.algorithm.backend.loader import Loader if TYPE_CHECKING: import numpy as np import numpy.typing as npt - from cssfinder.cssfproject import AlgoMode, Backend, Precision + from cssfinder.cssfproject import AlgoMode, Precision class Gilbert: @@ -46,7 +46,7 @@ def __init__( depth: int, quantity: int, mode: AlgoMode, - backend: Backend, + backend: str, precision: Precision, visibility: float, is_debug: bool = False, @@ -61,7 +61,7 @@ def __init__( self.is_debug = is_debug - backend_type = _backend.select(backend, self.precision) + backend_type = Loader().new().get_backend(backend, self.precision) self.backend = backend_type( self.initial, self.depth, diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 8ea8575..95375c1 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -37,6 +37,7 @@ import cssfinder from cssfinder import examples +from cssfinder.algorithm.backend.loader import Loader from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError from cssfinder.api import AmbiguousTaskKeyError, create_report_from, run_project_from from cssfinder.crossplatform import open_file_explorer, open_terminal @@ -210,6 +211,17 @@ def _log_exit(code: int) -> None: raise SystemExit(code) +@main.group("backend") +def _backend() -> None: + """Group of commands for inspecting available backends.""" + + +@_backend.command("list") +def _backend_list() -> None: + """List available backends.""" + rich.get_console().print(Loader.new().get_rich_table()) + + @main.group("examples") def _examples() -> None: """Group of commands for accessing bundled examples.""" diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index d1518c1..00d8fda 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -501,7 +501,7 @@ def _validate_state(cls, value: str | State) -> State: def get_backend(self) -> BackendCfg: """Return resources object.""" if self.backend is None: - self.backend = BackendCfg(name=Backend.NumPy, precision=Precision.DOUBLE) + self.backend = BackendCfg(name="numpy", precision=Precision.DOUBLE) return self.backend def get_resources(self) -> Resources: @@ -552,23 +552,13 @@ class AlgoMode(CaseInsensitiveEnum): class BackendCfg(CommonBaseModel): """Container class grouping configuration of backend used by Gilbert algorithm.""" - name: Backend + name: str """Name of backend to use.""" precision: Precision """Specify precision of calculations.""" -class Backend(CaseInsensitiveEnum): - """Backend to use for calculations.""" - - # pylint: disable=invalid-name - - NumPy = "NumPy" - - # pylint: enable=invalid-name - - class Precision(CaseInsensitiveEnum): """Precision of calculations performed.""" diff --git a/cssfinder/examples/5qubits_py/cssfproject.py b/cssfinder/examples/5qubits_py/cssfproject.py index f742059..bdd6a28 100644 --- a/cssfinder/examples/5qubits_py/cssfproject.py +++ b/cssfinder/examples/5qubits_py/cssfproject.py @@ -37,7 +37,6 @@ from cssfinder.api import run_project from cssfinder.cssfproject import ( AlgoMode, - Backend, BackendCfg, CSSFProject, GilbertCfg, @@ -54,7 +53,7 @@ gilbert=GilbertCfg( mode=AlgoMode.FSnQd, backend=BackendCfg( - name=Backend.NumPy, + name="numpy", precision=Precision.SINGLE, ), state=State(file=path.as_posix()), From b094a080aec4d2aa1e647538e4ba660e7130d3a6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 20 Mar 2023 18:45:47 +0100 Subject: [PATCH 133/227] Switch to use dynamically imported backends --- cssfinder/algorithm/backend/numpy/__init__.py | 25 -- .../algorithm/backend/numpy/_impl/__init__.py | 27 -- .../backend/numpy/_impl/_complex128.py | 396 ----------------- .../backend/numpy/_impl/_complex64.py | 400 ------------------ cssfinder/algorithm/backend/numpy/base.py | 278 ------------ .../algorithm/backend/numpy/complex128.py | 43 -- .../algorithm/backend/numpy/complex64.py | 43 -- cssfinder/algorithm/backend/numpy/impl.py | 210 --------- cssfinder/algorithm/gilbert.py | 4 +- 9 files changed, 2 insertions(+), 1424 deletions(-) delete mode 100644 cssfinder/algorithm/backend/numpy/__init__.py delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/__init__.py delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/_complex128.py delete mode 100644 cssfinder/algorithm/backend/numpy/_impl/_complex64.py delete mode 100644 cssfinder/algorithm/backend/numpy/base.py delete mode 100644 cssfinder/algorithm/backend/numpy/complex128.py delete mode 100644 cssfinder/algorithm/backend/numpy/complex64.py delete mode 100644 cssfinder/algorithm/backend/numpy/impl.py diff --git a/cssfinder/algorithm/backend/numpy/__init__.py b/cssfinder/algorithm/backend/numpy/__init__.py deleted file mode 100644 index ee9be39..0000000 --- a/cssfinder/algorithm/backend/numpy/__init__.py +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Contains implementation of Gilbert created using numpy package.""" - - -from __future__ import annotations diff --git a/cssfinder/algorithm/backend/numpy/_impl/__init__.py b/cssfinder/algorithm/backend/numpy/_impl/__init__.py deleted file mode 100644 index d9f1bd1..0000000 --- a/cssfinder/algorithm/backend/numpy/_impl/__init__.py +++ /dev/null @@ -1,27 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Groups modules containing implementation of Gilbert algorithm utilities with -different precisions. -""" - - -from __future__ import annotations diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py b/cssfinder/algorithm/backend/numpy/_impl/_complex128.py deleted file mode 100644 index c66328f..0000000 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex128.py +++ /dev/null @@ -1,396 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -# -# ------------------------------------------------------------------------------------ # -# # -# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # -# # -# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # -# use `poe gen-numpy-impl` to generate python files. # -# # -# ------------------------------------------------------------------------------------ # -# -"""Module contains implementation of backend operations in numpy. - -Spec ----- - -- Floating precision: np.float64 -- Complex precision: np.complex128 - -""" - -from __future__ import annotations - -from typing import TYPE_CHECKING - -import numpy as np -from numba import jit - -if TYPE_CHECKING: - import numpy.typing as npt - - -# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ -# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ -# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ - - -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype(np.complex128) - - -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.complex128], matrix2: npt.NDArray[np.complex128] -) -> np.float64: - """Calculate scalar product of two matrices.""" - retval = np.trace(np.dot(matrix1, matrix2)).real - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex128]: - """Generate a random vector with Haar measure.""" - real = np.random.uniform(0, 1, depth) # noqa: NPY002 - imag = np.random.uniform(0, 1, depth) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Generate multiple random vectors with Haar measure in form of matrix.""" - real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Normalize a vector.""" - mtx2 = np.dot(mtx, np.conj(mtx)) - - val = np.sqrt(np.real(mtx2)) - - retval = mtx / val - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.complex128]) -> npt.NDArray[np.complex128]: - """Build a projection from a vector.""" - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def kronecker( - mtx: npt.NDArray[np.complex128], mtx1: npt.NDArray[np.complex128] -) -> npt.NDArray[np.complex128]: - """Kronecker Product.""" - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - - dot_0_1 = np.tensordot(mtx, mtx1, 0) - - out_mtx = np.swapaxes(dot_0_1, 1, 2) - - retval = out_mtx.reshape(output_shape).astype(np.complex128, copy=False) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.complex128], unitary: npt.NDArray[np.complex128] -) -> npt.NDArray[np.complex128]: - """Sandwich an operator with a unitary.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - - return rho2a # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def apply_symmetries( - rho: npt.NDArray[np.complex128], symmetries: list[list[npt.NDArray[np.complex128]]] -) -> npt.NDArray[np.complex128]: - """Apply symmetries to density matrix. - - Parameters - ---------- - rho : npt.NDArray[np.complex128] - Density matrix to which we want to apply symmetries. - symmetries : list[list[npt.NDArray[np.complex128]]] - List of matrices representing the symmetries. - - Returns - ------- - npt.NDArray[np.complex128] - The result of applying the symmetries to the given density matrix. - - Notes - ----- - The first input `rho` is modified by this function. If you don't want to modify the - original array, make a copy before passing it to this function. - - This function calculates the trace of output density matrix and normalizes it before - returning. - - """ - output = rho - for row in symmetries: - for sym in row: - output += rotate(output, sym) - - output /= np.trace(output) - return output - - -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def optimize_d_fs( - new_state: npt.NDArray[np.complex128], - visibility_state: npt.NDArray[np.complex128], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[np.complex128]: - """Optimize implementation for FSnQd mode.""" - product_2_3 = product(new_state, visibility_state) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(depth, quantity, 0) - - rotated_2 = rotate(new_state, unitary) - - for idx in range(updates_count): - idx_mod = idx % int(quantity) - unitary = random_unitary_d_fs(depth, quantity, idx_mod) - - rotated_2 = rotate(new_state, unitary) - - product_rot2_3 = product(rotated_2, visibility_state) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(new_state, unitary) - - while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - - product_rot2_3 = product(rotated_2, visibility_state) - - return rotated_2.astype(np.complex128, copy=False) # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_d_fs( - depth: int, quantity: int, idx: int -) -> npt.NDArray[np.complex128]: - """N quDits.""" - value = _random_unitary_d_fs(depth) - - mtx = expand_d_fs(value, depth, quantity, idx) - - return mtx # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex128]: - random_mtx = random_d_fs(depth, 1) - - identity_mtx = np.identity(depth).astype(np.complex128) - - rand_mul = np.multiply(_VALUE, random_mtx) - - value = np.add(rand_mul, identity_mtx) - - return value # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Random n quDit state.""" - rand_vectors = get_random_haar_2d(depth, quantity) - vector = normalize(rand_vectors[0]) - - for i in range(quantity - 1): - idx_vector = normalize(rand_vectors[i]) - - vector = np.outer(vector, idx_vector).flatten() - - vector = project(vector) - - return vector # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def expand_d_fs( - value: npt.NDArray[np.complex128], - depth: int, - quantity: int, - idx: int, -) -> npt.NDArray[np.complex128]: - """Expand an operator to n quDits.""" - depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1, dtype=np.complex128) - - depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2, dtype=np.complex128) - - kronecker_1 = kronecker(identity_1, value) - - kronecker_2 = kronecker(kronecker_1, identity_2) - - return kronecker_2 # type: ignore[no-any-return] - - -# ██████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ██ ██████ ██████ ███████ - - -@jit(nopython=True, nogil=True, cache=True) -def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Draw random biseparable state.""" - random_vector_1 = normalize(get_random_haar_1d(depth)) - random_vector_2 = normalize(get_random_haar_1d(quantity)) - - vector = np.outer(random_vector_1, random_vector_2).flatten() - - vector = project(vector) - - return vector # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) - - random_matrix = project(random_vector) - - identity_depth = np.identity(depth).astype(np.complex128) - - identity_quantity = np.identity(quantity).astype(np.complex128) - - unitary_biseparable = _VALUE * random_matrix + identity_depth - - retval = kronecker(unitary_biseparable, identity_quantity) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex128]: - """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) - - random_matrix = project(random_vector) - - identity_depth = np.identity(depth).astype(np.complex128) - - identity_quantity = np.identity(quantity).astype(np.complex128) - - unitary_biseparable = _VALUE * random_matrix + identity_depth - - retval = kronecker(identity_quantity, unitary_biseparable) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def optimize_bs( - new_state: npt.NDArray[np.complex128], - visibility_state: npt.NDArray[np.complex128], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[np.complex128]: - """Run the minimization algorithm to optimize the biseparable state. - - Parameters - ---------- - new_state : npt.NDArray[np.complex128] - Randomly drawn state to be optimized. - visibility_state : npt.NDArray[np.complex128] - Visibility matrix. - depth : int - Depth of analyzed system. - quantity : int - Quantity of quDits in system. - updates_count : int - Number of optimizer iterations to execute. - - Returns - ------- - npt.NDArray[np.complex128] - Optimized state. - - """ - pp1 = product(new_state, visibility_state) - - return_state = new_state.copy() - - for index in range(updates_count): - if index % 2: - unitary = random_unitary_bs(depth, quantity) - else: - unitary = random_unitary_bs_reverse(depth, quantity) - - return_state = rotate(new_state, unitary) - - if pp1 > product(return_state, visibility_state): - unitary = unitary.conj().T - return_state = rotate(new_state, unitary) - - pp2 = product(return_state, visibility_state) - - while pp2 > pp1: - pp1 = pp2 - return_state = rotate(return_state, unitary) - pp2 = product(return_state, visibility_state) - - return return_state diff --git a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py b/cssfinder/algorithm/backend/numpy/_impl/_complex64.py deleted file mode 100644 index 1a023e4..0000000 --- a/cssfinder/algorithm/backend/numpy/_impl/_complex64.py +++ /dev/null @@ -1,400 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -# -# ------------------------------------------------------------------------------------ # -# # -# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # -# # -# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # -# use `poe gen-numpy-impl` to generate python files. # -# # -# ------------------------------------------------------------------------------------ # -# -"""Module contains implementation of backend operations in numpy. - -Spec ----- - -- Floating precision: np.float32 -- Complex precision: np.complex64 - -""" - -from __future__ import annotations - -from typing import TYPE_CHECKING - -import numpy as np -from numba import jit - -if TYPE_CHECKING: - import numpy.typing as npt - - -# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ -# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ -# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ - - -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype(np.complex64) - - -@jit(nopython=True, nogil=True, cache=True) -def product( - matrix1: npt.NDArray[np.complex64], matrix2: npt.NDArray[np.complex64] -) -> np.float32: - """Calculate scalar product of two matrices.""" - retval = np.trace(np.dot(matrix1, matrix2)).real - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar_1d(depth: int) -> npt.NDArray[np.complex64]: - """Generate a random vector with Haar measure.""" - real = np.random.uniform(0, 1, depth) # noqa: NPY002 - imag = np.random.uniform(0, 1, depth) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - retval = (retval).astype(np.complex64) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Generate multiple random vectors with Haar measure in form of matrix.""" - real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - retval = (retval).astype(np.complex64) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def normalize(mtx: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Normalize a vector.""" - mtx2 = np.dot(mtx, np.conj(mtx)) - - val = np.sqrt(np.real(mtx2)) - - retval = mtx / val - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def project(mtx1: npt.NDArray[np.complex64]) -> npt.NDArray[np.complex64]: - """Build a projection from a vector.""" - retval = np.outer(mtx1, np.conj(mtx1)) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def kronecker( - mtx: npt.NDArray[np.complex64], mtx1: npt.NDArray[np.complex64] -) -> npt.NDArray[np.complex64]: - """Kronecker Product.""" - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - - dot_0_1 = np.tensordot(mtx, mtx1, 0) - - out_mtx = np.swapaxes(dot_0_1, 1, 2) - - retval = out_mtx.reshape(output_shape).astype(np.complex64, copy=False) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def rotate( - rho2: npt.NDArray[np.complex64], unitary: npt.NDArray[np.complex64] -) -> npt.NDArray[np.complex64]: - """Sandwich an operator with a unitary.""" - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - - return rho2a # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def apply_symmetries( - rho: npt.NDArray[np.complex64], symmetries: list[list[npt.NDArray[np.complex64]]] -) -> npt.NDArray[np.complex64]: - """Apply symmetries to density matrix. - - Parameters - ---------- - rho : npt.NDArray[np.complex64] - Density matrix to which we want to apply symmetries. - symmetries : list[list[npt.NDArray[np.complex64]]] - List of matrices representing the symmetries. - - Returns - ------- - npt.NDArray[np.complex64] - The result of applying the symmetries to the given density matrix. - - Notes - ----- - The first input `rho` is modified by this function. If you don't want to modify the - original array, make a copy before passing it to this function. - - This function calculates the trace of output density matrix and normalizes it before - returning. - - """ - output = rho - for row in symmetries: - for sym in row: - output += rotate(output, sym) - - output /= np.trace(output) - return output - - -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def optimize_d_fs( - new_state: npt.NDArray[np.complex64], - visibility_state: npt.NDArray[np.complex64], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[np.complex64]: - """Optimize implementation for FSnQd mode.""" - product_2_3 = product(new_state, visibility_state) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(depth, quantity, 0) - - rotated_2 = rotate(new_state, unitary) - - for idx in range(updates_count): - idx_mod = idx % int(quantity) - unitary = random_unitary_d_fs(depth, quantity, idx_mod) - - rotated_2 = rotate(new_state, unitary) - - product_rot2_3 = product(rotated_2, visibility_state) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(new_state, unitary) - - while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - - product_rot2_3 = product(rotated_2, visibility_state) - - return rotated_2.astype(np.complex64, copy=False) # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_d_fs( - depth: int, quantity: int, idx: int -) -> npt.NDArray[np.complex64]: - """N quDits.""" - value = _random_unitary_d_fs(depth) - - mtx = expand_d_fs(value, depth, quantity, idx) - - return mtx # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def _random_unitary_d_fs(depth: int) -> npt.NDArray[np.complex64]: - random_mtx = random_d_fs(depth, 1) - - identity_mtx = np.identity(depth).astype(np.complex64) - - rand_mul = np.multiply(_VALUE, random_mtx) - - value = np.add(rand_mul, identity_mtx) - - return value # type: ignore[no-any-return] - - -@jit(nopython=True, nogil=True, cache=True) -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Random n quDit state.""" - rand_vectors = get_random_haar_2d(depth, quantity) - vector = normalize(rand_vectors[0]) - - for i in range(quantity - 1): - idx_vector = normalize(rand_vectors[i]) - - vector = np.outer(vector, idx_vector).flatten() - - vector = project(vector) - - return vector # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def expand_d_fs( - value: npt.NDArray[np.complex64], - depth: int, - quantity: int, - idx: int, -) -> npt.NDArray[np.complex64]: - """Expand an operator to n quDits.""" - depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1, dtype=np.complex64) - - depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2, dtype=np.complex64) - - kronecker_1 = kronecker(identity_1, value) - - kronecker_2 = kronecker(kronecker_1, identity_2) - - return kronecker_2 # type: ignore[no-any-return] - - -# ██████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ██ ██████ ██████ ███████ - - -@jit(nopython=True, nogil=True, cache=True) -def random_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Draw random biseparable state.""" - random_vector_1 = normalize(get_random_haar_1d(depth)) - random_vector_2 = normalize(get_random_haar_1d(quantity)) - - vector = np.outer(random_vector_1, random_vector_2).flatten() - - vector = project(vector) - - return vector # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) - - random_matrix = project(random_vector) - - identity_depth = np.identity(depth).astype(np.complex64) - - identity_quantity = np.identity(quantity).astype(np.complex64) - - unitary_biseparable = _VALUE * random_matrix + identity_depth - - retval = kronecker(unitary_biseparable, identity_quantity) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[np.complex64]: - """Draw random unitary for biseparable state.""" - random_vector = normalize(get_random_haar_1d(depth)) - - random_matrix = project(random_vector) - - identity_depth = np.identity(depth).astype(np.complex64) - - identity_quantity = np.identity(quantity).astype(np.complex64) - - unitary_biseparable = _VALUE * random_matrix + identity_depth - - retval = kronecker(identity_quantity, unitary_biseparable) - - return retval # type: ignore[no-any-return] - - -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -def optimize_bs( - new_state: npt.NDArray[np.complex64], - visibility_state: npt.NDArray[np.complex64], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[np.complex64]: - """Run the minimization algorithm to optimize the biseparable state. - - Parameters - ---------- - new_state : npt.NDArray[np.complex64] - Randomly drawn state to be optimized. - visibility_state : npt.NDArray[np.complex64] - Visibility matrix. - depth : int - Depth of analyzed system. - quantity : int - Quantity of quDits in system. - updates_count : int - Number of optimizer iterations to execute. - - Returns - ------- - npt.NDArray[np.complex64] - Optimized state. - - """ - pp1 = product(new_state, visibility_state) - - return_state = new_state.copy() - - for index in range(updates_count): - if index % 2: - unitary = random_unitary_bs(depth, quantity) - else: - unitary = random_unitary_bs_reverse(depth, quantity) - - return_state = rotate(new_state, unitary) - - if pp1 > product(return_state, visibility_state): - unitary = unitary.conj().T - return_state = rotate(new_state, unitary) - - pp2 = product(return_state, visibility_state) - - while pp2 > pp1: - pp1 = pp2 - return_state = rotate(return_state, unitary) - pp2 = product(return_state, visibility_state) - - return return_state diff --git a/cssfinder/algorithm/backend/numpy/base.py b/cssfinder/algorithm/backend/numpy/base.py deleted file mode 100644 index 3f19bea..0000000 --- a/cssfinder/algorithm/backend/numpy/base.py +++ /dev/null @@ -1,278 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Module contains numpy based implementation of Gilbert algorithm but not bound to -specific precision. -""" - -from __future__ import annotations - -import logging -from types import MethodType -from typing import TYPE_CHECKING, Callable, Generic, Optional, TypeVar, cast - -import numpy as np -import numpy.typing as npt -from numba import jit - -from cssfinder.algorithm.backend.base import BackendBase -from cssfinder.cssfproject import AlgoMode - -if TYPE_CHECKING: - from cssfinder.algorithm.backend.numpy.impl import Implementation - -PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) -SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) - - -class NumPyBase(Generic[PRIMARY, SECONDARY_co], BackendBase): - """Implementation of Gilbert algorithm using python numpy library.""" - - _visibility: npt.NDArray[PRIMARY] - _intermediate: npt.NDArray[PRIMARY] - _visibility_reduced: npt.NDArray[PRIMARY] - - _corrections: list[tuple[int, int, float]] - _symmetries: list[list[npt.NDArray[PRIMARY]]] - _projection: Optional[npt.NDArray[PRIMARY]] - - impl: Implementation[PRIMARY, SECONDARY_co] - primary_t: type[PRIMARY] - secondary_t: type[SECONDARY_co] - - optimize_callback: Callable[ - [npt.NDArray[PRIMARY], npt.NDArray[PRIMARY], int, int, int], - npt.NDArray[PRIMARY], - ] - - def __init__( # noqa: PLR0913 - self, - initial: npt.NDArray[np.complex128], - depth: int, - quantity: int, - mode: AlgoMode, - visibility: float, - *, - is_debug: bool = False, - ) -> None: - super().__init__(initial, depth, quantity, mode, visibility, is_debug=is_debug) - - self.initial = initial.astype(self.primary_t) - - self._visibility = self._create_visibility_matrix() - self._intermediate = self._create_intermediate_state() - self._corrections = [] - - self._symmetries = [] - self._projection = None - - self._aa4: SECONDARY_co = 2 * self.impl.product( - self._visibility, - self._intermediate, - ) - self._aa6: SECONDARY_co = self.impl.product( - self._intermediate, - self._intermediate, - ) - self._visibility_reduced = cast( - npt.NDArray[PRIMARY], - (self._visibility - self._intermediate), - ) - self._dd1: SECONDARY_co = self.impl.product( - self._intermediate, - self._visibility_reduced, - ) - - if self.mode == AlgoMode.FSnQd: - self.optimize_callback = self.impl.optimize_d_fs - elif self.mode == AlgoMode.SBiPa: - self.optimize_callback = self.impl.optimize_bs - - if not self.is_debug: - self.jit() - - def _create_visibility_matrix(self) -> npt.NDArray[PRIMARY]: - vis_state = self.visibility * self.initial - inv_vis_ident = (1 - self.visibility) * np.identity( - len(self.initial), - dtype=np.complex128, - ) - return (vis_state + inv_vis_ident / len(self.initial)).astype( - self.primary_t, - ) - - def _create_intermediate_state(self) -> npt.NDArray[PRIMARY]: - intermediate = np.zeros_like(self._visibility, dtype=np.complex128) - np.fill_diagonal(intermediate, self._visibility.diagonal()) - return intermediate.astype(self.primary_t) - - def set_symmetries( - self, symmetries: list[list[npt.NDArray[np.complex128]]] - ) -> None: - """Set symmetries to use during calculations. - - This operation may involve type conversion and copying of symmetries, therefore - if may be slow and should should be done only once. - - Parameters - ---------- - symmetries : list[list[npt.NDArray[np.complex128]]] - Array of symmetries. - - """ - self._symmetries = [ - [cell.astype(self.primary_t) for cell in row] for row in symmetries - ] - if self._symmetries: - self._intermediate = self.impl.apply_symmetries( - self._intermediate, self._symmetries - ) - - def set_projection(self, projection: npt.NDArray[np.complex128]) -> None: - """Set projection to use during calculations. - - This operation may involve type conversion and copying of symmetries, therefore - if may be slow and should should be done only once. - - Parameters - ---------- - projection : npt.NDArray[np.complex128] - Projection matrix. - - """ - self._projection = projection.astype(self.primary_t) - self._intermediate = self.impl.rotate(self._intermediate, self._projection) - logging.debug("Projection have been set %r", self._projection) - - def get_state(self) -> npt.NDArray[np.complex128]: - """Return current system state with all optimizations applied.""" - return self._intermediate.copy().astype(np.complex128) - - def get_corrections(self) -> list[tuple[int, int, float]]: - """Return list of all corrections found during optimization.""" - return self._corrections.copy() - - def get_corrections_count(self) -> int: - """Return number of all corrections found during optimization.""" - return len(self._corrections) - - def jit(self) -> None: - """JIT compile performance critical parts of backend with numba.""" - _update_state = jit( # type: ignore[assignment] - forceobj=True, - cache=True, - looplift=False, - )( - self.__class__._update_state, # noqa: SLF001 - ) - - self._update_state = MethodType(_update_state, self) # type: ignore[assignment] - - run_epoch = jit(forceobj=True, cache=True, looplift=False)( - self.__class__.run_epoch, - ) - - self.run_epoch = MethodType(run_epoch, self) # type: ignore[assignment] - - def run_epoch(self, iterations: int, epoch_index: int) -> None: - """Run sequence of iterations without stopping to check any stop conditions.""" - depth = self.depth - quantity = self.quantity - epochs = 20 * depth * depth * quantity - - for iteration_index in range(iterations): - if self.mode == AlgoMode.FSnQd: - alternative_state = self.impl.random_d_fs(depth, quantity) - elif self.mode == AlgoMode.SBiPa: - alternative_state = self.impl.random_bs(depth, quantity) - - if ( - self.impl.product(alternative_state, self._visibility_reduced) - > self._dd1 - ): - self._update_state( - alternative_state, - iterations, - epoch_index, - epochs, - iteration_index, - ) - - def _update_state( # noqa: PLR0913 - self, - alternative_state: npt.NDArray[PRIMARY], - iterations: int, - epoch_index: int, - epochs: int, - iteration_index: int, - ) -> None: - depth = self.depth - quantity = self.quantity - - alternative_state = self.optimize_callback( - alternative_state, - self._visibility_reduced, - depth, - quantity, - epochs, - ) - - if self._symmetries: - self._intermediate = self.impl.apply_symmetries( - self._intermediate, self._symmetries - ) - if self._projection is not None: - self._intermediate = self.impl.rotate(self._intermediate, self._projection) - - aa3: SECONDARY_co = self.impl.product(alternative_state, alternative_state) - aa2: SECONDARY_co = 2 * self.impl.product(self._visibility, alternative_state) - aa5: SECONDARY_co = 2 * self.impl.product(self._intermediate, alternative_state) - - bb2: SECONDARY_co = -self._aa4 + aa2 + aa5 - 2 * aa3 - bb3: SECONDARY_co = self._aa6 - aa5 + aa3 - cc1: SECONDARY_co = -bb2 / (2 * bb3) - - if 0 <= cc1 <= 1: - self._intermediate = cast( - npt.NDArray[PRIMARY], - (cc1 * self._intermediate) + ((1 - cc1) * alternative_state), - ) - - self._visibility_reduced = cast( - npt.NDArray[PRIMARY], - (self._visibility - self._intermediate), - ) - self._aa4 = 2 * self.impl.product(self._visibility, self._intermediate) - self._aa6 = self.impl.product(self._intermediate, self._intermediate) - self._dd1 = self._aa4 / 2 - self._aa6 - - self._corrections.append( - ( - epoch_index * iterations + iteration_index + 1, - len(self._corrections) + 1, - float( - self.impl.product( - self._visibility_reduced, - self._visibility_reduced, - ), - ), - ), - ) diff --git a/cssfinder/algorithm/backend/numpy/complex128.py b/cssfinder/algorithm/backend/numpy/complex128.py deleted file mode 100644 index 002333a..0000000 --- a/cssfinder/algorithm/backend/numpy/complex128.py +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Numpy backend with fixed precision of complex 128-bit.""" - -from __future__ import annotations - -from typing import cast - -import numpy as np - -from cssfinder.algorithm.backend.numpy._impl import _complex128 -from cssfinder.algorithm.backend.numpy.base import NumPyBase -from cssfinder.algorithm.backend.numpy.impl import Implementation - - -class NumPyC128(NumPyBase[np.complex128, np.float64]): - """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" - - impl: Implementation[np.complex128, np.float64] = cast( - Implementation[np.complex128, np.float64], - _complex128, - ) - primary_t: type[np.complex128] = np.complex128 - secondary_t: type[np.float64] = np.float64 diff --git a/cssfinder/algorithm/backend/numpy/complex64.py b/cssfinder/algorithm/backend/numpy/complex64.py deleted file mode 100644 index d14a8f8..0000000 --- a/cssfinder/algorithm/backend/numpy/complex64.py +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Numpy backend with fixed precision of complex 128-bit.""" - -from __future__ import annotations - -from typing import cast - -import numpy as np - -from cssfinder.algorithm.backend.numpy._impl import _complex64 -from cssfinder.algorithm.backend.numpy.base import NumPyBase -from cssfinder.algorithm.backend.numpy.impl import Implementation - - -class NumPyC64(NumPyBase[np.complex64, np.float32]): - """Concrete numpy based backend for Gilbert algorithm using complex128 type.""" - - impl: Implementation[np.complex64, np.float32] = cast( - Implementation[np.complex64, np.float32], - _complex64, - ) - primary_t: type[np.complex64] = np.complex64 - secondary_t: type[np.float32] = np.float32 diff --git a/cssfinder/algorithm/backend/numpy/impl.py b/cssfinder/algorithm/backend/numpy/impl.py deleted file mode 100644 index 944316f..0000000 --- a/cssfinder/algorithm/backend/numpy/impl.py +++ /dev/null @@ -1,210 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Module contains declaration of Implementation protocol for numpy based backends.""" - -from __future__ import annotations - -from typing import TYPE_CHECKING, Generic, Protocol, TypeVar - -import numpy as np - -if TYPE_CHECKING: - import numpy.typing as npt - -PRIMARY = TypeVar("PRIMARY", np.complex128, np.complex64) -SECONDARY_co = TypeVar("SECONDARY_co", np.float64, np.float32, covariant=True) - - -class Implementation(Generic[PRIMARY, SECONDARY_co], Protocol): - """Implementation of Gilbert algorithm utilities with specific precision.""" - - # █████ ██████ ███ ███ ███ ███ ██████ ███ ██ - # ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ - # ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ - # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ - # █████ ██████ ██ ██ ██ ██ ██████ ██ ████ - - @staticmethod - def product( - matrix1: npt.NDArray[PRIMARY], - matrix2: npt.NDArray[PRIMARY], - ) -> SECONDARY_co: - """Calculate scalar product of two matrices.""" - ... - - @staticmethod - def get_random_haar_1d(depth: int) -> npt.NDArray[PRIMARY]: - """Generate a random vector with Haar measure.""" - ... - - @staticmethod - def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Generate multiple random vectors with Haar measure in form of matrix.""" - ... - - @staticmethod - def normalize(mtx: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: - """Normalize a vector.""" - ... - - @staticmethod - def project(mtx1: npt.NDArray[PRIMARY]) -> npt.NDArray[PRIMARY]: - """Build a projection from a vector.""" - ... - - @staticmethod - def kronecker( - mtx: npt.NDArray[PRIMARY], - mtx1: npt.NDArray[PRIMARY], - ) -> npt.NDArray[PRIMARY]: - """Kronecker Product.""" - ... - - @staticmethod - def rotate( - rho2: npt.NDArray[PRIMARY], - unitary: npt.NDArray[PRIMARY], - ) -> npt.NDArray[PRIMARY]: - """Sandwich an operator with a unitary.""" - ... - - @staticmethod - def apply_symmetries( - rho: npt.NDArray[PRIMARY], symmetries: list[list[npt.NDArray[PRIMARY]]] - ) -> npt.NDArray[PRIMARY]: - """Apply symmetries to density matrix. - - Parameters - ---------- - rho : npt.NDArray[PRIMARY] - Density matrix to which we want to apply symmetries. - symmetries : list[list[npt.NDArray[PRIMARY]]] - List of matrices representing the symmetries. - - Returns - ------- - npt.NDArray[PRIMARY] - The result of applying the symmetries to the given density matrix. - - Notes - ----- - The first input `rho` is modified by this function. If you don't want to modify - the original array, make a copy before passing it to this function. - - This function calculates the trace of output density matrix and normalizes it - before returning. - - """ - ... - - # ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 - # ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 - # ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 - # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 - # ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 - - @staticmethod - def optimize_d_fs( - new_state: npt.NDArray[PRIMARY], - visibility_state: npt.NDArray[PRIMARY], - depth: int, - quantity: int, - epochs: int, - ) -> npt.NDArray[PRIMARY]: - """Optimize implementation for FSnQd mode.""" - ... - - @staticmethod - def random_unitary_d_fs( - depth: int, - quantity: int, - idx: int, - ) -> npt.NDArray[PRIMARY]: - """N quDits.""" - ... - - @staticmethod - def random_d_fs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Draw random n quDit state.""" - ... - - @staticmethod - def expand_d_fs( # pylint: disable=invalid-name - value: npt.NDArray[PRIMARY], - depth: int, - quantity: int, - idx: int, - ) -> npt.NDArray[PRIMARY]: - """Expand an operator to n quDits.""" - ... - - # ██████ ███████ ███ ███ ██████ ██████ ███████ - # ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ - # ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ - # ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ - # ██████ ███████ ██ ██ ██████ ██████ ███████ - - @staticmethod - def random_bs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Draw random biseparable state.""" - ... - - @staticmethod - def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Draw random unitary for biseparable state.""" - ... - - @staticmethod - def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[PRIMARY]: - """Draw random unitary for biseparable state.""" - ... - - @staticmethod - def optimize_bs( - new_state: npt.NDArray[PRIMARY], - visibility_state: npt.NDArray[PRIMARY], - depth: int, - quantity: int, - updates_count: int, - ) -> npt.NDArray[PRIMARY]: - """Run the minimization algorithm to optimize the biseparable state. - - Parameters - ---------- - new_state : npt.NDArray[np.complex128] - Randomly drawn state to be optimized. - visibility_state : npt.NDArray[np.complex128] - Visibility matrix. - depth : int - Depth of analyzed system. - quantity : int - Quantity of quDits in system. - updates_count : int - Number of optimizer iterations to execute. - - Returns - ------- - npt.NDArray[np.complex128] - Optimized state. - - """ - ... diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 8f04e38..47136ed 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -52,8 +52,8 @@ def __init__( is_debug: bool = False, ) -> None: self.initial = initial - self.depth = depth - self.quantity = quantity + self.depth = int(depth) + self.quantity = int(quantity) self.mode = mode self.precision = precision From 1304d19134b601be83a00a89d57005f316d28253 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 20 Mar 2023 18:56:12 +0100 Subject: [PATCH 134/227] Remove outdated generation stage from CI --- .github/workflows/system_tests.yaml | 4 - scripts/gen_numpy_impl.py | 86 ----- scripts/templates/numpy.pyjinja2 | 541 ---------------------------- 3 files changed, 631 deletions(-) delete mode 100644 scripts/gen_numpy_impl.py delete mode 100644 scripts/templates/numpy.pyjinja2 diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 9aad6bd..5161638 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -60,9 +60,5 @@ jobs: - name: Install dependencies run: poetry install --no-cache --sync - - name: Generate debug numpy backend - # This step generates numpy backend with all debug options enabled. - run: poetry run poe gen-numpy-impl --disable-jit --debug-dtype-checks - - name: Run system tests run: poetry run poe test-system diff --git a/scripts/gen_numpy_impl.py b/scripts/gen_numpy_impl.py deleted file mode 100644 index 0d181c1..0000000 --- a/scripts/gen_numpy_impl.py +++ /dev/null @@ -1,86 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - - -"""Script for generating numpy precision backends from template.""" - -from __future__ import annotations - -import logging -import subprocess -import sys -from pathlib import Path - -import black -import black.mode -import click -import jinja2 - -TEMPLATES_DIR = Path(__file__).parent / "templates" -DEFAULT_DEST = Path(__file__).parent.parent / "cssfinder/algorithm/backend/numpy/_impl" - - -@click.command() -@click.option("--dest", default=DEFAULT_DEST, type=Path) -@click.option("--disable-jit", is_flag=True, default=False) -@click.option("--debug-dtype-checks", is_flag=True, default=False) -@click.option("--use-normal-random", is_flag=True, default=False) -def main( - dest: Path, - *, - disable_jit: bool, - debug_dtype_checks: bool, - use_normal_random: bool, -) -> None: - """Generate numpy precision backends from template.""" - logging.warning("Option --disable-jit %r", disable_jit) - logging.warning("Option --debug-dtype-checks %r", debug_dtype_checks) - logging.warning("Option --use-normal-random %r", use_normal_random) - - env = jinja2.Environment( - loader=jinja2.FileSystemLoader(TEMPLATES_DIR.as_posix()), - autoescape=jinja2.select_autoescape(), - ) - template = env.get_template("numpy.pyjinja2") - - for name, floating, complex_ in [ - ("_complex128.py", "np.float64", "np.complex128"), - ("_complex64.py", "np.float32", "np.complex64"), - ]: - logging.warning("Rendering %r %r %r", name, floating, complex_) - source = template.render( - floating=floating, - complex=complex_, - disable_jit=disable_jit, - debug_dtype_checks=debug_dtype_checks, - use_normal_random=use_normal_random, - is_64bit="64" in floating, - is_32bit="32" in floating, - ) - source = black.format_str(source, mode=black.mode.Mode()) - dest_file: Path = dest / name - dest_file.write_text(source, "utf-8") - subprocess.run([sys.executable, "-m", "ruff", dest_file.as_posix(), "--fix"]) - - raise SystemExit(0) - - -if __name__ == "__main__": - main() # pylint: disable=no-value-for-parameter diff --git a/scripts/templates/numpy.pyjinja2 b/scripts/templates/numpy.pyjinja2 deleted file mode 100644 index 8ccb485..0000000 --- a/scripts/templates/numpy.pyjinja2 +++ /dev/null @@ -1,541 +0,0 @@ -# Copyright 2023 Krzysztof Wiśniewski -# -# -# Permission is hereby granted, free of charge, to any person obtaining a copy of this -# software and associated documentation files (the “Software”), to deal in the Software -# without restriction, including without limitation the rights to use, copy, modify, -# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to -# permit persons to whom the Software is furnished to do so, subject to the following -# conditions: -# -# The above copyright notice and this permission notice shall be included in all copies -# or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, -# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A -# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT -# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF -# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE -# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -# -# ------------------------------------------------------------------------------------ # -# # -# THIS FILE WAS AUTOMATICALLY GENERATED FROM TEMPLATE. DO NOT MODIFY. # -# # -# To modify this file, modify `scripts/templates/numpy.pyjinja2` and # -# use `poe gen-numpy-impl` to generate python files. # -# # -# ------------------------------------------------------------------------------------ # -# -"""Module contains implementation of backend operations in numpy. - -Spec ----- - -- Floating precision: {{floating}} -- Complex precision: {{complex}} - -""" - -from __future__ import annotations - -from typing import TYPE_CHECKING - -import numpy as np -from numba import jit - -if TYPE_CHECKING: - import numpy.typing as npt - -{% if debug_dtype_checks %} - -from typing import Any - - -# ██████ ███████ ██████ ██ ██ ██████ -# ██ ██ ██ ██ ██ ██ ██ ██ -# ██ ██ █████ ██████ ██ ██ ██ ███ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ███████ ██████ ██████ ██████ - - -def assert_dtype(ob: Any, dtype: Any) -> None: - if ob.dtype != dtype: - raise AssertionError(ob.dtype) - -{% endif %} - -# █████ ██████ ███ ███ ███ ███ ██████ ███ ██ -# ██ ██ ██ ████ ████ ████ ████ ██ ██ ████ ██ -# ██ ██ ██ ██ ████ ██ ██ ████ ██ ██ ██ ██ ██ ██ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# █████ ██████ ██ ██ ██ ██ ██████ ██ ████ - - -_REAL = np.cos(0.01 * np.pi) -_IMAG = 1j * np.sin(0.01 * np.pi) -_VALUE = (_REAL + _IMAG - 1).astype({{complex}}) - -{% if not disable_jit %} - -{% macro jit_nopython() -%} -@jit(nopython=True, nogil=True, cache=True) -{%- endmacro %} - -{% macro jit_forceobj() -%} -@jit(nopython=False, forceobj=True, cache=True, looplift=False) -{%- endmacro %} - -{% else %} - -{% macro jit_nopython() -%}{%- endmacro %} -{% macro jit_forceobj() -%}{%- endmacro %} - -{% endif %} - -{{ jit_nopython() }} -def product( - matrix1: npt.NDArray[{{complex}}], matrix2: npt.NDArray[{{complex}}] -) -> {{floating}}: - """Calculate scalar product of two matrices.""" - {% if debug_dtype_checks %}assert_dtype(matrix1, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(matrix2, {{complex}}){% endif %} - - retval = np.trace(np.dot(matrix1, matrix2)).real - {% if debug_dtype_checks %}assert_dtype(retval, {{floating}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def get_random_haar_1d(depth: int) -> npt.NDArray[{{complex}}]: - """Generate a random vector with Haar measure.""" - {% if use_normal_random %} - - real = np.random.normal(0, 1, depth) # noqa: NPY002 - imaginary = np.random.normal(0, 1, depth) # noqa: NPY002 - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - retval = real + 1j * imaginary - - {% else %} - - real = np.random.uniform(0, 1, depth) # noqa: NPY002 - imag = np.random.uniform(0, 1, depth) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - {% endif %} - - {% if is_32bit %} - {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} - {# as real * imag results in np.complex128 type. #} - retval = (retval).astype({{complex}}) - {% endif %} - - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def get_random_haar_2d(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Generate multiple random vectors with Haar measure in form of matrix.""" - {% if use_normal_random %} - - real = np.random.normal(0, 1, (quantity, depth)) # noqa: NPY002 - imaginary = np.random.normal(0, 1, (quantity, depth)) # noqa: NPY002 - # Complex128 is a correct type returned from this expression. - # Checked on numpy 1.23.5 - retval = real + 1j * imaginary - - {% else %} - - real = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - imag = np.random.uniform(0, 1, (quantity, depth)) # noqa: NPY002 - - retval = np.exp(2 * np.pi * 1j * real) * np.sqrt(-np.log(imag)) - - {% endif %} - - {% if is_32bit %} - {# np.random.uniform return np.float64 so cast is only needed when using complex64, #} - {# as real * imag results in np.complex128 type. #} - retval = (retval).astype({{complex}}) - {% endif %} - - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - -{{ jit_nopython() }} -def normalize(mtx: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: - """Normalize a vector.""" - {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - - mtx2 = np.dot(mtx, np.conj(mtx)) - {% if debug_dtype_checks %}assert_dtype(mtx2, {{complex}}){% endif %} - - val = np.sqrt(np.real(mtx2)) - {% if debug_dtype_checks %}assert_dtype(val, {{floating}}){% endif %} - - retval = (mtx / val) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def project(mtx1: npt.NDArray[{{complex}}]) -> npt.NDArray[{{complex}}]: - """Build a projection from a vector.""" - {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} - - retval = np.outer(mtx1, np.conj(mtx1)) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_forceobj() }} -def kronecker( - mtx: npt.NDArray[{{complex}}], mtx1: npt.NDArray[{{complex}}] -) -> npt.NDArray[{{complex}}]: - """Kronecker Product.""" - {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(mtx1, {{complex}}){% endif %} - - ddd1 = len(mtx) - ddd2 = len(mtx1) - - output_shape = (ddd1 * ddd2, ddd1 * ddd2) - - dot_0_1 = np.tensordot(mtx, mtx1, 0) - {% if debug_dtype_checks %}assert_dtype(dot_0_1, {{complex}}){% endif %} - - out_mtx = np.swapaxes(dot_0_1, 1, 2) - {% if debug_dtype_checks %}assert_dtype(out_mtx, {{complex}}){% endif %} - - retval = out_mtx.reshape(output_shape).astype({{complex}}, copy=False) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def rotate( - rho2: npt.NDArray[{{complex}}], unitary: npt.NDArray[{{complex}}] -) -> npt.NDArray[{{complex}}]: - """Sandwich an operator with a unitary.""" - {% if debug_dtype_checks %}assert_dtype(rho2, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - - rho2a = np.dot(rho2, np.conj(unitary).T) # matmul replaced with dot - {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} - - rho2a = np.dot(unitary, rho2a) # matmul replaced with dot - {% if debug_dtype_checks %}assert_dtype(rho2a, {{complex}}){% endif %} - - return rho2a # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def apply_symmetries( - rho: npt.NDArray[{{complex}}], symmetries: list[list[npt.NDArray[{{complex}}]]] -) -> npt.NDArray[{{complex}}]: - """Apply symmetries to density matrix. - - Parameters - ---------- - rho : npt.NDArray[{{complex}}] - Density matrix to which we want to apply symmetries. - symmetries : list[list[npt.NDArray[{{complex}}]]] - List of matrices representing the symmetries. - - Returns - ------- - npt.NDArray[{{complex}}] - The result of applying the symmetries to the given density matrix. - - Notes - ----- - The first input `rho` is modified by this function. If you don't want to modify the - original array, make a copy before passing it to this function. - - This function calculates the trace of output density matrix and normalizes it before - returning. - - """ - {% if debug_dtype_checks %}assert_dtype(rho, {{complex}}){% endif %} - {% if debug_dtype_checks %} - for row_ in symmetries: - for sym_ in row_: - assert_dtype(sym_, {{complex}}) - {% endif %} - output = rho - for row in symmetries: - for sym in row: - output += rotate(output, sym) - - output /= np.trace(output) - return output - - -# ██████ ███████ ███████ ███ ███ ██████ ██████ ███████ # noqa: E501 -# ██ ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ # noqa: E501 -# ██ ██ █████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ # noqa: E501 -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ # noqa: E501 -# ██████ ██ ███████ ██ ██ ██████ ██████ ███████ # noqa: E501 - - -{{ jit_forceobj() }} -def optimize_d_fs( - new_state: npt.NDArray[{{complex}}], - visibility_state: npt.NDArray[{{complex}}], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[{{complex}}]: - """Optimize implementation for FSnQd mode.""" - - {% if debug_dtype_checks %}assert_dtype(new_state, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(visibility_state, {{complex}}){% endif %} - - product_2_3 = product(new_state, visibility_state) - - # To make sure rotated_2 is not unbound - unitary = random_unitary_d_fs(depth, quantity, 0) - {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - - rotated_2 = rotate(new_state, unitary) - - for idx in range(updates_count): - idx_mod = idx % int(quantity) - unitary = random_unitary_d_fs(depth, quantity, idx_mod) - {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - - rotated_2 = rotate(new_state, unitary) - {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} - - product_rot2_3 = product(rotated_2, visibility_state) - - if product_2_3 > product_rot2_3: - unitary = unitary.conj().T - rotated_2 = rotate(new_state, unitary) - {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} - - while (new_product_2_3 := product_rot2_3) > product_2_3: - product_2_3 = new_product_2_3 - rotated_2 = rotate(rotated_2, unitary) - {% if debug_dtype_checks %}assert_dtype(rotated_2, {{complex}}){% endif %} - - product_rot2_3 = product(rotated_2, visibility_state) - - return rotated_2.astype({{complex}}, copy=False) # type: ignore[no-any-return] - - -{{ jit_forceobj() }} -def random_unitary_d_fs( - depth: int, quantity: int, idx: int -) -> npt.NDArray[{{complex}}]: - """N quDits.""" - value = _random_unitary_d_fs(depth) - {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} - - mtx = expand_d_fs(value, depth, quantity, idx) - {% if debug_dtype_checks %}assert_dtype(mtx, {{complex}}){% endif %} - - return mtx # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def _random_unitary_d_fs(depth: int) -> npt.NDArray[{{complex}}]: - random_mtx = random_d_fs(depth, 1) - {% if debug_dtype_checks %}assert_dtype(random_mtx, {{complex}}){% endif %} - - identity_mtx = np.identity(depth).astype({{complex}}) - {% if debug_dtype_checks %}assert_dtype(identity_mtx, {{complex}}){% endif %} - - rand_mul = np.multiply(_VALUE, random_mtx) - {% if debug_dtype_checks %}assert_dtype(rand_mul, {{complex}}){% endif %} - - value = np.add(rand_mul, identity_mtx) - {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} - return value # type: ignore[no-any-return] - - -{{ jit_nopython() }} -def random_d_fs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Random n quDit state.""" - rand_vectors = get_random_haar_2d(depth, quantity) - vector = normalize(rand_vectors[0]) - {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - - for i in range(quantity - 1): - idx_vector = normalize(rand_vectors[i]) - {% if debug_dtype_checks %}assert_dtype(idx_vector, {{complex}}){% endif %} - - vector = np.outer(vector, idx_vector).flatten() - {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - - vector = project(vector) - {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - - return vector # type: ignore[no-any-return] - - - -{{ jit_forceobj() }} -def expand_d_fs( - value: npt.NDArray[{{complex}}], - depth: int, - quantity: int, - idx: int, -) -> npt.NDArray[{{complex}}]: - """Expand an operator to n quDits.""" - {% if debug_dtype_checks %}assert_dtype(value, {{complex}}){% endif %} - - depth_1 = int(depth**idx) - identity_1 = np.identity(depth_1, dtype={{complex}}) - {% if debug_dtype_checks %}assert_dtype(identity_1, {{complex}}){% endif %} - - depth_2 = int(depth ** (quantity - idx - 1)) - identity_2 = np.identity(depth_2, dtype={{complex}}) - {% if debug_dtype_checks %}assert_dtype(identity_2, {{complex}}){% endif %} - - kronecker_1 = kronecker(identity_1, value) - {% if debug_dtype_checks %}assert_dtype(kronecker_1, {{complex}}){% endif %} - - kronecker_2 = kronecker(kronecker_1, identity_2) - {% if debug_dtype_checks %}assert_dtype(kronecker_2, {{complex}}){% endif %} - - return kronecker_2 # type: ignore[no-any-return] - - -# ██████ ███████ ███ ███ ██████ ██████ ███████ -# ██ ██ ██ ████ ████ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ████ ██ ██ ██ ██ ██ █████ -# ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ ██ -# ██████ ███████ ██ ██ ██████ ██████ ███████ - - -{{ jit_nopython() }} -def random_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Draw random biseparable state.""" - random_vector_1 = normalize(get_random_haar_1d(depth)) - random_vector_2 = normalize(get_random_haar_1d(quantity)) - - vector = np.outer(random_vector_1, random_vector_2).flatten() - {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - - vector = project(vector) - {% if debug_dtype_checks %}assert_dtype(vector, {{complex}}){% endif %} - - return vector # type: ignore[no-any-return] - - -{% macro _random_unitary_bs() -%} - random_vector = normalize(get_random_haar_1d(depth)) - {% if debug_dtype_checks %}assert_dtype(random_vector, {{complex}}){% endif %} - - random_matrix = project(random_vector) - {% if debug_dtype_checks %}assert_dtype(random_matrix, {{complex}}){% endif %} - - identity_depth = np.identity(depth).astype({{complex}}) - {% if debug_dtype_checks %}assert_dtype(identity_depth, {{complex}}){% endif %} - - identity_quantity = np.identity(quantity).astype({{complex}}) - {% if debug_dtype_checks %}assert_dtype(identity_quantity, {{complex}}){% endif %} - - unitary_biseparable = (_VALUE * random_matrix + identity_depth) - {% if debug_dtype_checks %}assert_dtype(unitary_biseparable, {{complex}}){% endif %} -{%- endmacro %} - - -{{ jit_forceobj() }} -def random_unitary_bs(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Draw random unitary for biseparable state.""" - - {{_random_unitary_bs()}} - - retval = kronecker(unitary_biseparable, identity_quantity) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_forceobj() }} -def random_unitary_bs_reverse(depth: int, quantity: int) -> npt.NDArray[{{complex}}]: - """Draw random unitary for biseparable state.""" - - {{_random_unitary_bs()}} - - retval = kronecker(identity_quantity, unitary_biseparable) - {% if debug_dtype_checks %}assert_dtype(retval, {{complex}}){% endif %} - - return retval # type: ignore[no-any-return] - - -{{ jit_forceobj() }} -def optimize_bs( - new_state: npt.NDArray[{{complex}}], - visibility_state: npt.NDArray[{{complex}}], - depth: int, - quantity: int, - updates_count: int, -) -> npt.NDArray[{{complex}}]: - """Run the minimization algorithm to optimize the biseparable state. - - Parameters - ---------- - new_state : npt.NDArray[{{complex}}] - Randomly drawn state to be optimized. - visibility_state : npt.NDArray[{{complex}}] - Visibility matrix. - depth : int - Depth of analyzed system. - quantity : int - Quantity of quDits in system. - updates_count : int - Number of optimizer iterations to execute. - - Returns - ------- - npt.NDArray[{{complex}}] - Optimized state. - - """ - {% if debug_dtype_checks %}assert_dtype(new_state, {{complex}}){% endif %} - {% if debug_dtype_checks %}assert_dtype(visibility_state, {{complex}}){% endif %} - - pp1 = product(new_state, visibility_state) - - return_state = new_state.copy() - - for index in range(updates_count): - if index % 2: - unitary = random_unitary_bs(depth, quantity) - else: - unitary = random_unitary_bs_reverse(depth, quantity) - {% if debug_dtype_checks %}assert_dtype(unitary, {{complex}}){% endif %} - - return_state = rotate(new_state, unitary) - {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - - if pp1 > product(return_state, visibility_state): - unitary = unitary.conj().T - return_state = rotate(new_state, unitary) - {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - - pp2 = product(return_state, visibility_state) - - while pp2 > pp1: - pp1 = pp2 - return_state = rotate(return_state, unitary) - pp2 = product(return_state, visibility_state) - {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - - {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - - {% if debug_dtype_checks %}assert_dtype(return_state, {{complex}}){% endif %} - - return return_state From 366b6e08782ec1d8a1f3401cb6d7e61d8d8e9c4b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 20 Mar 2023 20:47:17 +0100 Subject: [PATCH 135/227] Add numpy backend to dev dependencies --- LICENSE.md | 19 +++++++++++++++++++ poetry.lock | 28 +++++++++++++++++++++++++++- pyproject.toml | 1 + 3 files changed, 47 insertions(+), 1 deletion(-) create mode 100644 LICENSE.md diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..c5d33ab --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,19 @@ +Copyright 2023 Krzysztof Wiśniewski + +Permission is hereby granted, free of charge, to any person obtaining a copy of +this software and associated documentation files (the “Software”), to deal in +the Software without restriction, including without limitation the rights to +use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies +of the Software, and to permit persons to whom the Software is furnished to do +so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/poetry.lock b/poetry.lock index 3eaf078..26064cb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -696,6 +696,32 @@ test = ["hypothesis (>=1.11.4,!=3.79.2)", "iso8601", "pretend", "pytest (>=6.2.0 test-randomorder = ["pytest-randomly"] tox = ["tox"] +[[package]] +name = "cssfinder-backend-numpy" +version = "0.1.1" +description = "Implementation of CSSFinder backend using NumPy library." +category = "dev" +optional = false +python-versions = ">=3.8,<4.0" +files = [ + {file = "cssfinder_backend_numpy-0.1.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:dc766fe4b58b16ad4b561ac4c3ba58009406df472c90ba33c28ab33e553676e0"}, + {file = "cssfinder_backend_numpy-0.1.1-cp310-cp310-manylinux_2_35_x86_64.whl", hash = "sha256:f69cf8ba58886175ea5a9366bd18f92bd866aed45a4b567c78446a666797d2b2"}, + {file = "cssfinder_backend_numpy-0.1.1-cp310-cp310-win_amd64.whl", hash = "sha256:bdea364ea06aaa1558c013339c23291cef71f4d8ff707f9f283b5460a571f96a"}, + {file = "cssfinder_backend_numpy-0.1.1-cp38-cp38-macosx_12_0_x86_64.whl", hash = "sha256:39409c6866fa18229a895d27f1cb38df93fa02eb00330cdf2535a528f857b585"}, + {file = "cssfinder_backend_numpy-0.1.1-cp38-cp38-manylinux_2_35_x86_64.whl", hash = "sha256:457a606c62195af057c738d9b5c44911acc4f90763853bfdcd2d37d2d224b4d0"}, + {file = "cssfinder_backend_numpy-0.1.1-cp38-cp38-win_amd64.whl", hash = "sha256:7fd5e58a104b40874646b33dd27a74f5ebe641f9d2816140121572669616744e"}, + {file = "cssfinder_backend_numpy-0.1.1-cp39-cp39-macosx_12_0_x86_64.whl", hash = "sha256:cf63e40dd9028b66b85cbb01975a618ab308a1dde04bff8e545184fe099df870"}, + {file = "cssfinder_backend_numpy-0.1.1-cp39-cp39-manylinux_2_35_x86_64.whl", hash = "sha256:ab8599e927418b2fe147833a05fc863047cd277223240511636a9d157d9e2b49"}, + {file = "cssfinder_backend_numpy-0.1.1-cp39-cp39-win_amd64.whl", hash = "sha256:d40abfd2a9eaec3b9f7cb2ad2b331566826c297a0d79e8c2782647a9ce4a5ca9"}, + {file = "cssfinder_backend_numpy-0.1.1.tar.gz", hash = "sha256:e925a89418c8a3cae9d4e7b0683fffcf985e7006cc6dcb143da8933ece8b0e88"}, +] + +[package.dependencies] +cssfinder = ">=0.4.0,<0.5.0" +numba = ">=0.56.4,<0.57.0" +numpy = ">=1.23.0,<2.0.0" +typing-extensions = ">=4.5.0,<5.0.0" + [[package]] name = "cssselect2" version = "0.7.0" @@ -3609,4 +3635,4 @@ test = ["pytest"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "860da55546d7ff1c2875a311c4b1c9be98c5d99e083a18fa95661fe6f3bcb59c" +content-hash = "3528a0a018eb67ea2815e359634e9c1a2f479285575c414afb0b24aed4327bdb" diff --git a/pyproject.toml b/pyproject.toml index 9de5e63..ee6124d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,6 +42,7 @@ poetry = "^1.3.2" jinja2 = "^3.1.2" ruff = "^0.0.254" ipykernel = "^6.21.3" +cssfinder-backend-numpy = "^0.1.1" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" From bcc041c0e8b3f1f2e8900f04fe3ebd54111240fe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 21 Mar 2023 00:24:45 +0100 Subject: [PATCH 136/227] Pin latest version of cssfinder_backend_numpy --- poetry.lock | 24 ++++++++++++------------ pyproject.toml | 2 +- 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/poetry.lock b/poetry.lock index 26064cb..533456b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -698,22 +698,22 @@ tox = ["tox"] [[package]] name = "cssfinder-backend-numpy" -version = "0.1.1" +version = "0.2.0" description = "Implementation of CSSFinder backend using NumPy library." category = "dev" optional = false python-versions = ">=3.8,<4.0" files = [ - 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Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.4.0 +pip install ./dist/cssfinder-0.5.0 ``` What you expect is ``` -Successfully installed cssfinder-0.4.0 +Successfully installed cssfinder-0.5.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.4.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.5.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.4.0` should be included in this list. +But `cssfinder-0.5.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 9759535..0dcb8f9 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.4.0" +__version__ = "0.5.0" diff --git a/pyproject.toml b/pyproject.toml index 0c8fddc..621dab7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.4.0" +version = "0.5.0" description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", From 3adfeffeaf01306eb977ba21ff74012c5c226b3b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 21 Mar 2023 01:20:23 +0100 Subject: [PATCH 138/227] Update CHANGELOG --- CHANGELOG.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 05c6303..1756e75 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,13 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.5.0 - Mar 20, 2023 + +- Add dynamically loaded backends. +- Remove bundled numpy backend. Now it has to be installed separately from + `cssfinder_backend_numpy`. +- Add automatic priority elevation, may require administrator privileges. + ### 0.4.0 - Mar 17, 2023 - Add interface for accessing bundled examples. 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"89849acede949f9073cb1e02c826842d2649c562e41bfcecdc1f1e714b3d89fe" +content-hash = "3a50a1b59ef4d4fe8631b70b7fcad882ee3170da965ce57c64bc2de22ec921c2" diff --git a/pyproject.toml b/pyproject.toml index 621dab7..755360a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,7 +42,7 @@ poetry = "^1.3.2" jinja2 = "^3.1.2" ruff = "^0.0.254" ipykernel = "^6.21.3" -cssfinder-backend-numpy = "^0.2.0" +cssfinder-backend-numpy = ">=0.3.0" [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" From 6a8118278df06b6c9d4604107f93148b5fc98d81 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 26 Mar 2023 17:17:08 +0200 Subject: [PATCH 140/227] Add command for creating new static projects --- .vscode/dictionary.txt | 4 +- .vscode/settings.json | 4 + cssfinder/cli.py | 57 ++++++++-- cssfinder/interactive.py | 236 +++++++++++++++++++++++++++++++++++++++ poetry.lock | 22 +++- pyproject.toml | 1 + 6 files changed, 312 insertions(+), 12 deletions(-) create mode 100644 cssfinder/interactive.py diff --git a/.vscode/dictionary.txt b/.vscode/dictionary.txt index c86d02e..428a226 100644 --- a/.vscode/dictionary.txt +++ b/.vscode/dictionary.txt @@ -17,8 +17,9 @@ figsize figwidth forceobj fsnqd -hlines getpid +getuid +hlines iloc ionice IOPRIO @@ -46,6 +47,7 @@ psutil pydantic pyjinja pyplot +pytermgui pytest qualname qubits diff --git a/.vscode/settings.json b/.vscode/settings.json index 660fefd..866c852 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -68,6 +68,10 @@ { "name": "numpy", "depth": 4 + }, + { + "name": "pytermgui", + "depth": 8 } ], "python.analysis.autoImportCompletions": true, diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 95375c1..e24532b 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -47,6 +47,7 @@ ProjectFileNotFoundError, ) from cssfinder.enums import ExitCode +from cssfinder.interactive import create_new_project from cssfinder.log import configure_logger from cssfinder.reports.renderer import ReportType @@ -94,33 +95,71 @@ def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: ) +def _is_path_needed_for_subcommand( + ctx: click.Context, param: click.Option, value: Optional[str] # noqa: ARG001 +) -> str | None: + print(type(value)) + if ctx.invoked_subcommand in ["task"] and not value: + msg = "The path parameter is required for this subcommand." + raise click.BadParameter(msg) + return value + + @main.group("project") @click.pass_context -@click.argument("path", type=click.Path(exists=True, file_okay=True, dir_okay=True)) +@click.option( + "--path", + "-p", + type=click.Path(exists=True, file_okay=True, dir_okay=True), + callback=_is_path_needed_for_subcommand, +) def _project(ctx: click.Context, path: str) -> None: """Group of commands for interaction with projects.""" ctx.obj.project_path = path -@_project.command("run") +@_project.command("new") +@click.option("--author", default=None, help="Author metadata field value.") +@click.option("--email", default=None, help="Email metadata field value.") +@click.option("--name", default=None, help="Name metadata field value.") +@click.option("--description", default=None, help="Description metadata field value.") +@click.option("--project-version", default=None, help="Version metadata field value.") +def _project_new( + author: Optional[str], + email: Optional[str], + name: Optional[str], + description: Optional[str], + project_version: Optional[str], +) -> None: + """Create new project.""" + create_new_project(author, email, name, description, project_version) + + +@_project.group("task") +def _task() -> None: + """Group of commands to operate on tasks.""" + + +@_task.command("run") @click.option( - "--tasks", - "-t", + "--match", + "-m", + "match_", multiple=True, help="Use to specify names of tasks to run. When omitted, all tasks are executed.", ) @click.pass_obj -def _run(ctx: Ctx, tasks: list[str] | None) -> None: +def _run(ctx: Ctx, match_: list[str] | None) -> None: """Run tasks from the project.""" - if not tasks: - tasks = None + if not match_: + match_ = None if ctx.project_path is None: reason = "ctx.project_path shall not be None." raise RuntimeError(reason) try: - run_project_from(ctx.project_path, tasks, is_debug=ctx.is_debug) + run_project_from(ctx.project_path, match_, is_debug=ctx.is_debug) except ProjectFileNotFoundError as exc: logging.critical("Project file not found. %s", exc.args[0]) @@ -145,7 +184,7 @@ def _run(ctx: Ctx, tasks: list[str] | None) -> None: raise SystemExit(0) -@_project.command("task-report") +@_task.command("report") @click.argument( "task", ) diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py new file mode 100644 index 0000000..4e8460c --- /dev/null +++ b/cssfinder/interactive.py @@ -0,0 +1,236 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Collection of functions making up interactive interface of CSSFinder.""" + +from __future__ import annotations + +import getpass +import subprocess +from pathlib import Path +from typing import Optional + +import pytermgui as ptg +from pydantic import EmailStr, ValidationError + +from cssfinder.cssfproject import CSSFProject, Meta, SemVerStr + + +def create_new_project( + default_author: Optional[str] = None, + default_email: Optional[str] = None, + default_name: Optional[str] = None, + default_description: Optional[str] = None, + default_version_string: Optional[str] = None, +) -> None: + """Create new project directory and cssfinder.json file.""" + all_set = ( + default_author is not None + and default_email is not None + and default_name is not None + and default_description is not None + and default_version_string is not None + ) + + author = default_author or _load_default_name_from_git() + email = default_email or _load_default_email_from_git() + name = default_name or "new_project" + description = default_description or " " + version_string = default_version_string or "1.0.0" + + if all_set: + meta = Meta( + author=author, + email=EmailStr(email), + name=name, + description=description, + version=SemVerStr(version_string), + ) + else: + meta = get_project_fields_with_pytermgui( + author, + email, + name, + description, + version_string, + ) + + project_file_path = Path.cwd() / meta.name / "cssfproject.json" + if project_file_path.exists(): + if ( + input("Project already exists, override? (y/n) ").casefold() + == "Y".casefold() + ): + project_file_path.unlink() + else: + print("Aborted.") + raise SystemExit(1) + + project_file_path.parent.mkdir(0o777, parents=True, exist_ok=True) + project_file_path.touch(0o777, exist_ok=True) + + project = CSSFProject( + meta=meta, + tasks=[], + project_path=project_file_path.as_posix(), + ) + serialized = project.json(indent=4, ensure_ascii=False) + project_file_path.write_text(serialized) + + +def _load_default_name_from_git() -> str: + # Retrieve default from system name just in case, but git usually contains + # better value. + default_name = getpass.getuser() + + try: + retval = subprocess.run(["git", "config", "user.name"], capture_output=True) + if retval.returncode == 0: + default_name = retval.stdout.decode("utf-8").strip() + + except (FileNotFoundError, ValueError): + pass + + return default_name + + +def _load_default_email_from_git() -> EmailStr: + default_email = EmailStr("unknown@unknown.com") + + try: + retval = subprocess.run(["git", "config", "user.email"], capture_output=True) + if retval.returncode == 0: + default_email = EmailStr(retval.stdout.decode("utf-8").strip()) + + except (FileNotFoundError, ValueError, ValidationError): + pass + + return default_email + + +def get_project_fields_with_pytermgui( + default_author_name: str, + default_author_email: str, + default_project_name: str, + default_project_description: str, + default_project_version: str, +) -> Meta: + """Request user for meta values for project using TUI.""" + message = "" + + while True: + ( + author_name, + author_email, + project_name, + project_description, + project_version, + ) = _run_tui( + default_author_name, + default_author_email, + default_project_name, + default_project_description, + default_project_version, + message, + ) + + try: + return Meta( + author=author_name, + email=EmailStr(author_email), + name=project_name, + description=project_description, + version=SemVerStr(project_version), + ) + except ValidationError as e: + message = f"[210 bold]{e}" + + +def _run_tui( # noqa: PLR0913 + default_author_name: str, + default_author_email: str, + default_project_name: str, + default_project_description: str, + default_project_version: str, + message: str, +) -> tuple[str, str, str, str, str]: + is_interrupted: bool = True + + with ptg.WindowManager() as manager: + + def _cb(_widget: ptg.Button) -> None: + nonlocal is_interrupted + is_interrupted = False + manager.stop() + + window = ptg.Window( + "[63 bold]Project metadata", + *(() if not message else (message,)), + "", + ( + author_name := ptg.InputField( + default_author_name, prompt="Author Name: " + ) + ), + ( + author_email := ptg.InputField( + default_author_email, prompt="Author Email: " + ) + ), + ( + project_name := ptg.InputField( + default_project_name, prompt="Project Name: " + ) + ), + ( + project_description := ptg.InputField( + default_project_description, prompt="Project Description: " + ) + ), + ( + project_version := ptg.InputField( + default_project_version, prompt="Project Version: " + ) + ), + "", + ptg.Container( + ptg.Button( + "Submit", + onclick=_cb, + ), + box="EMPTY_VERTICAL", + ), + width=60, + box="DOUBLE", + ).center() + + manager.add(window) + + if is_interrupted: + raise KeyboardInterrupt + + return ( + author_name.value, + author_email.value, + project_name.value, + project_description.value, + project_version.value, + ) diff --git a/poetry.lock b/poetry.lock index 51af62e..85ec5b7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. [[package]] name = "appdirs" @@ -2657,6 +2657,24 @@ files = [ {file = "pyrsistent-0.19.3.tar.gz", hash = "sha256:1a2994773706bbb4995c31a97bc94f1418314923bd1048c6d964837040376440"}, ] +[[package]] +name = "pytermgui" +version = "7.3.0" +description = "Python TUI framework with mouse support, modular widget system, customizable and rapid terminal markup language and more!" +category = "main" +optional = false +python-versions = ">=3.8" +files = [ + {file = "pytermgui-7.3.0-py3-none-any.whl", hash = "sha256:a08e525c6bd7fe74bb3d0910bd37bd2b9eb6dbb98667f807cce2cd02eb8e9525"}, + {file = "pytermgui-7.3.0.tar.gz", hash = "sha256:3a6211e872fae6b6a6445efff2260266f33d288a7ec64411238a673a23f333af"}, +] + +[package.dependencies] +typing-extensions = "*" + +[package.extras] +yaml = ["pyyaml"] + [[package]] name = "pytest" version = "7.2.2" @@ -3635,4 +3653,4 @@ test = ["pytest"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "3a50a1b59ef4d4fe8631b70b7fcad882ee3170da965ce57c64bc2de22ec921c2" +content-hash = "7c3033a7bb90831753210074a33e4337ffff71416697ca0822c723dd1040ffbe" diff --git a/pyproject.toml b/pyproject.toml index 755360a..00034d2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,7 @@ matplotlib = "^3.7.0" pandas = "^1.5.3" weasyprint = "^58.1" psutil = "^5.9.4" +pytermgui = "^7.3.0" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" From 61d6068d7f5df1f3e29cb720c9b67f99bf7532cc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Sun, 26 Mar 2023 17:25:09 +0200 Subject: [PATCH 141/227] Improve response times for CLI by moving imports into callbacks --- cssfinder/cli.py | 49 ++++++++++++++++++++++++++++++++---------------- 1 file changed, 33 insertions(+), 16 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index e24532b..6e56fa5 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -29,27 +29,16 @@ import webbrowser from dataclasses import dataclass from pathlib import Path -from typing import Callable, Optional +from typing import TYPE_CHECKING, Callable, Optional import click import pendulum import rich import cssfinder -from cssfinder import examples -from cssfinder.algorithm.backend.loader import Loader -from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError -from cssfinder.api import AmbiguousTaskKeyError, create_report_from, run_project_from -from cssfinder.crossplatform import open_file_explorer, open_terminal -from cssfinder.cssfproject import ( - InvalidCSSFProjectContentError, - MalformedProjectFileError, - ProjectFileNotFoundError, -) -from cssfinder.enums import ExitCode -from cssfinder.interactive import create_new_project -from cssfinder.log import configure_logger -from cssfinder.reports.renderer import ReportType + +if TYPE_CHECKING: + from cssfinder import examples VERBOSITY_INFO: int = 2 @@ -76,9 +65,11 @@ class Ctx: @click.option("--debug", is_flag=True, default=False) def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: """CSSFinder is a script for finding closest separable states.""" - ctx.obj = Ctx(is_debug=debug) + from cssfinder.log import configure_logger configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) + ctx.obj = Ctx(is_debug=debug) + logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %s", pendulum.now().isoformat(sep=" ")) @@ -132,6 +123,8 @@ def _project_new( project_version: Optional[str], ) -> None: """Create new project.""" + from cssfinder.interactive import create_new_project + create_new_project(author, email, name, description, project_version) @@ -151,6 +144,14 @@ def _task() -> None: @click.pass_obj def _run(ctx: Ctx, match_: list[str] | None) -> None: """Run tasks from the project.""" + from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError + from cssfinder.api import run_project_from + from cssfinder.cssfproject import ( + InvalidCSSFProjectContentError, + MalformedProjectFileError, + ProjectFileNotFoundError, + ) + if not match_: match_ = None @@ -217,6 +218,9 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> TASK - name pattern matching exactly one task, for which report should be created. """ + from cssfinder.api import AmbiguousTaskKeyError, create_report_from + from cssfinder.reports.renderer import ReportType + assert ctx.project_path is not None include_report_types = [] @@ -258,6 +262,8 @@ def _backend() -> None: @_backend.command("list") def _backend_list() -> None: """List available backends.""" + from cssfinder.algorithm.backend.loader import Loader + rich.get_console().print(Loader.new().get_rich_table()) @@ -269,6 +275,8 @@ def _examples() -> None: @_examples.command("list") def _examples_list() -> None: """Show list of all available example projects.""" + from cssfinder import examples + console = rich.get_console() table = examples.Example.get_info_table() console.print() @@ -344,6 +352,10 @@ def _examples_clone( do_open_explorer: bool, ) -> None: """Clone one of examples to specific location.""" + from cssfinder.crossplatform import open_file_explorer, open_terminal + from cssfinder.cssfproject import ProjectFileNotFoundError + from cssfinder.enums import ExitCode + destination = Path.cwd() if out is None else Path(out).expanduser().resolve() example = _select_example(sha, name) @@ -380,6 +392,8 @@ def _examples_clone( def _get_validated_destination( destination: Path, example: examples.Example, *, force_overwrite: bool ) -> Path: + from cssfinder.enums import ExitCode + destination_project_folder = destination / example.folder_name is_destination_exists = destination_project_folder.exists() @@ -405,6 +419,9 @@ def _get_validated_destination( def _select_example(sha: Optional[str], name: Optional[str]) -> examples.Example: + from cssfinder import examples + from cssfinder.enums import ExitCode + if name is not None: try: example = examples.Example.select_by_name(name) From 69c9c51f6fa7c2f00a670c66cb5d408a8ee59bbd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 27 Mar 2023 02:30:43 +0200 Subject: [PATCH 142/227] Add CLI/TUI interface for adding new task --- cssfinder/cli.py | 116 +++++++++++++++++- cssfinder/constants.py | 56 +++++---- cssfinder/interactive.py | 257 +++++++++++++++++++++++++++++++++------ 3 files changed, 363 insertions(+), 66 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 6e56fa5..b8ad3cb 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -89,7 +89,6 @@ def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: def _is_path_needed_for_subcommand( ctx: click.Context, param: click.Option, value: Optional[str] # noqa: ARG001 ) -> str | None: - print(type(value)) if ctx.invoked_subcommand in ["task"] and not value: msg = "The path parameter is required for this subcommand." raise click.BadParameter(msg) @@ -133,6 +132,121 @@ def _task() -> None: """Group of commands to operate on tasks.""" +@_task.group("add") +def _add() -> None: + """Command for adding new tasks.""" + + +@_add.command("gilbert") +@click.pass_obj +@click.option("--name", default=None, help="Name for the task.") +@click.option("--mode", default=None, help="Algorithm mode.") +@click.option( + "--backend-name", + default=None, + help="Name of backend. Use `cssfinder backend list` to show installed backends.", +) +@click.option("--precision", default=None, help="Precision of calculations.") +@click.option( + "--state", + default=None, + help="Path to matrix file containing initial system state.", +) +@click.option( + "--depth", + default=None, + help="Depth of system, ie. number of dimensions in qu(D)it. (d)", +) +@click.option( + "--quantity", + default=None, + help="Quantity of systems. ie. number of qu(D)its in state. (n)", +) +@click.option( + "--visibility", + default=None, + help="Visibility against white noise, Between 0 and 1.", +) +@click.option( + "--max-epochs", default=None, help="Maximal number of algorithm epochs to perform." +) +@click.option( + "--iters-per-epoch", default=None, help="Number of iterations per single epoch." +) +@click.option( + "--max-corrections", + default=None, + help="Maximal number of corrections to collect. Because halt condition is checked " + "once per epoch, number of total corrections might exceed this limit for long " + "epochs. Use -1 to disable this limit.", +) +@click.option( + "--derive", + default=None, + help="Declare name of other existing task to derive missing field values from.", +) +@click.option( + "--symmetries", + default=None, + help="List of lists of files containing symmetries matrices as valid JSON literal.", +) +@click.option( + "--projection", + default=None, + help="Path to file containing projection matrix.", +) +def _gilbert( # noqa: PLR0913 + ctx: Ctx, + name: Optional[str], + mode: Optional[str], + backend_name: Optional[str], + precision: Optional[str], + state: Optional[str], + depth: Optional[str], + quantity: Optional[str], + visibility: Optional[str], + max_epochs: Optional[str], + iters_per_epoch: Optional[str], + max_corrections: Optional[str], + symmetries: Optional[str], + projection: Optional[str], + derive: Optional[str], +) -> None: + """Add new gilbert algorithm task. + + Task options can either be given by command line parameters or later interactively. + + """ + from cssfinder.cssfproject import CSSFProject + from cssfinder.interactive import GilbertTaskSpec, add_task_gilbert + + if ctx.project_path is None: + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) + + project = CSSFProject.load_project(ctx.project_path) + + add_task_gilbert( + project, + GilbertTaskSpec( + name or f"task_{len(project.tasks)}", + mode or "FSnQd", + backend_name or "numpy_jit", + precision or "single", + state or "{project.project_directory}/state.mtx", + depth, + quantity, + visibility or "0.4", + max_epochs or "100", + iters_per_epoch or "10000", + max_corrections or "1000", + symmetries or "[]", + projection, + derive, + ), + ) + + @_task.command("run") @click.option( "--match", diff --git a/cssfinder/constants.py b/cssfinder/constants.py index 8ee0c76..2951546 100644 --- a/cssfinder/constants.py +++ b/cssfinder/constants.py @@ -26,35 +26,37 @@ import numpy as np # fmt: off +# ruff: noqa: E501 PRIMES = np.array([ - 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, # noqa: E501 - 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, # noqa: E501 - 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, # noqa: E501 - 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, # noqa: E501 - 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, # noqa: E501 - 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, # noqa: E501 - 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, # noqa: E501 - 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, # noqa: E501 - 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, # noqa: E501 - 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, # noqa: E501 - 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, # noqa: E501 - 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, # noqa: E501 - 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, # noqa: E501 - 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, # noqa: E501 - 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, # noqa: E501 - 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, # noqa: E501 - 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, # noqa: E501 - 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, # noqa: E501 - 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, # noqa: E501 - 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, # noqa: E501 - 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, # noqa: E501 - 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, # noqa: E501 - 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, # noqa: E501 - 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, # noqa: E501 - 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, # noqa: E501 - 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, # noqa: E501 - 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, # noqa: E501 + 2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, + 37, 41, 43, 47, 53, 59, 61, 67, 71, 73, 79, + 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, + 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, + 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, + 263, 269, 271, 277, 281, 283, 293, 307, 311, 313, 317, + 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, + 397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, + 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, + 541, 547, 557, 563, 569, 571, 577, 587, 593, 599, 601, + 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, + 673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, + 751, 757, 761, 769, 773, 787, 797, 809, 811, 821, 823, + 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, + 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, + 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, + 1051, 1061, 1063, 1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, + 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, + 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, + 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, + 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, + 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, + 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, + 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663, 1667, 1669, 1693, + 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, + 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861, 1867, 1871, + 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, 1993, 1997, 1999, ], dtype=np.int64) +# ruff: noqa: E501 # fmt: on """All prime numbers from 2 to 1999, used by algorithms in this package.""" diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py index 4e8460c..6ac2306 100644 --- a/cssfinder/interactive.py +++ b/cssfinder/interactive.py @@ -25,13 +25,25 @@ import getpass import subprocess +from dataclasses import dataclass from pathlib import Path from typing import Optional import pytermgui as ptg from pydantic import EmailStr, ValidationError -from cssfinder.cssfproject import CSSFProject, Meta, SemVerStr +from cssfinder.cssfproject import ( + AlgoMode, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, +) def create_new_project( @@ -138,12 +150,12 @@ def get_project_fields_with_pytermgui( while True: ( - author_name, - author_email, - project_name, - project_description, - project_version, - ) = _run_tui( + default_author_name, + default_author_email, + default_project_name, + default_project_description, + default_project_version, + ) = _get_project_fields_with_pytermgui( default_author_name, default_author_email, default_project_name, @@ -154,17 +166,17 @@ def get_project_fields_with_pytermgui( try: return Meta( - author=author_name, - email=EmailStr(author_email), - name=project_name, - description=project_description, - version=SemVerStr(project_version), + author=default_author_name, + email=EmailStr(default_author_email), + name=default_project_name, + description=default_project_description, + version=SemVerStr(default_project_version), ) except ValidationError as e: message = f"[210 bold]{e}" -def _run_tui( # noqa: PLR0913 +def _get_project_fields_with_pytermgui( # noqa: PLR0913 default_author_name: str, default_author_email: str, default_project_name: str, @@ -185,31 +197,15 @@ def _cb(_widget: ptg.Button) -> None: "[63 bold]Project metadata", *(() if not message else (message,)), "", - ( - author_name := ptg.InputField( - default_author_name, prompt="Author Name: " - ) - ), - ( - author_email := ptg.InputField( - default_author_email, prompt="Author Email: " - ) - ), - ( - project_name := ptg.InputField( - default_project_name, prompt="Project Name: " - ) - ), - ( - project_description := ptg.InputField( - default_project_description, prompt="Project Description: " - ) - ), - ( - project_version := ptg.InputField( - default_project_version, prompt="Project Version: " - ) - ), + # fmt: off + # ruff: noqa: E501 + (author_name := InputField(default_author_name, prompt="Author Name: ")), + (author_email := InputField(default_author_email, prompt="Author Email: ")), + (project_name := InputField(default_project_name, prompt="Project Name: ")), + (project_description := InputField(default_project_description, prompt="Project Description: ")), + (project_version := InputField(default_project_version, prompt="Project Version: ")), + # ruff: noqa: E501 + # fmt: on "", ptg.Container( ptg.Button( @@ -234,3 +230,188 @@ def _cb(_widget: ptg.Button) -> None: project_description.value, project_version.value, ) + + +@dataclass +class GilbertTaskSpec: + """Specification of task.""" + + name: str + mode: str + backend_name: str + precision: str + state: Optional[str] = None + depth: Optional[str] = None + quantity: Optional[str] = None + visibility: Optional[str] = None + max_epochs: Optional[str] = None + iters_per_epoch: Optional[str] = None + max_corrections: Optional[str] = None + symmetries: Optional[str] = None + projection: Optional[str] = None + derive: Optional[str] = None + + def to_task(self) -> Task: + """Create Task object with values from spec.""" + return Task( + gilbert=GilbertCfg( + mode=AlgoMode(self.mode), + backend=BackendCfg( + name=self.backend_name, # type: ignore[arg-type] + precision=Precision(self.precision), + ), + state=State( + file=self.state, # type: ignore[arg-type] + depth=self.depth, # type: ignore[arg-type] + quantity=self.quantity, # type: ignore[arg-type] + ), + runtime=RuntimeCfg( + visibility=self.visibility, # type: ignore[arg-type] + max_epochs=self.max_epochs, # type: ignore[arg-type] + iters_per_epoch=self.iters_per_epoch, # type: ignore[arg-type] + max_corrections=self.max_corrections, # type: ignore[arg-type] + ), + ), + ) + + +def add_task_gilbert( + project: CSSFProject, + spec: GilbertTaskSpec, +) -> None: + """Add task to project and save it in place.""" + while True: + try: + task = spec.to_task() + break + + except (ValueError, TypeError, ValidationError, KeyError): + spec = get_gilbert_task_fields_with_pytermgui(spec) + + if spec.name in project.tasks and ( + input("Task already exists, override? (y/n) ").casefold() != "Y".casefold() + ): + print("Aborted.") + raise SystemExit(1) + + project.tasks[spec.name] = task + project.project_file.write_text(project.json(indent=4, ensure_ascii=False)) + + +class InputField(ptg.InputField): + """Custom Input field which avoids styling value.""" + + def _style_and_break_lines(self) -> list[str]: + """Styles and breaks self._lines.""" + document = (self.styles.prompt(self.prompt) + self.value).splitlines() + + lines: list[str] = [] + width = self.width + extend = lines.extend + + for line in document: + extend(ptg.break_line(line.replace("\n", "\\n"), width, fill=" ")) + extend("") + + return lines + + +def get_gilbert_task_fields_with_pytermgui( + spec: GilbertTaskSpec, message: Optional[str] = None +) -> GilbertTaskSpec: + """Create temporary TUI prompt for entering task configuration.""" + is_interrupted: bool = True + + with ptg.WindowManager() as manager: + + def _cb(_widget: ptg.Button) -> None: + nonlocal is_interrupted + is_interrupted = False + manager.stop() + + manager.layout = ptg.Layout() + manager.layout.add_slot("body", width=60) + + # fmt: off + # ruff: noqa: E501 + manager.add( + ptg.Window( + ptg.Container( + "[117 bold]New Task", + *(() if not message else (message,)), + "", + ptg.Container( + (field_name := InputField(spec.name, prompt="Task Name*: ")), + ), + "", + ptg.Label("[!gradient(33)]Backend", parent_align=0), + ptg.Container( + (field_backend_name := InputField(spec.backend_name, prompt="Backend Name: ")), + (field_precision := InputField(spec.precision, prompt="Precision: ")), + ), + ptg.Label("[!gradient(63)]Initial System State", parent_align=0), + ptg.Container( + (field_state := InputField(spec.state or "?", prompt="State File Path*: ")), + (field_depth := InputField(spec.depth or "None", prompt="System Depth: ")), + (field_quantity := InputField(spec.quantity or "None", prompt="System Quantity: ")), + ), + ptg.Label("[!gradient(63)]Execution Rules", parent_align=0), + ptg.Container( + (field_mode := InputField(spec.mode, prompt="Task Mode*: ")), + (field_visibility := InputField(spec.visibility or "", prompt="Visibility: ")), + (field_max_epochs := InputField(spec.max_epochs or "", prompt="Max Epochs: ")), + (field_iters_per_epoch := InputField(spec.iters_per_epoch or "", prompt="Iters Per Epoch: ")), + (field_max_corrections := InputField(spec.max_corrections or "", prompt="Max Corrections: ")), + ), + ptg.Label("[!gradient(63)]Modifiers", parent_align=0), + ptg.Container( + (field_symmetries := InputField(spec.symmetries or "None", prompt="Symmetries: ", multiline=True)), + (field_projection := InputField(spec.projection or "None", prompt="Projection: ")), + ), + "", + "* - Field is required.", + ptg.Container( + ptg.Button("Submit", onclick=_cb), + box=ptg.boxes.EMPTY_VERTICAL, + ), + box=ptg.boxes.DOUBLE, + ), + vertical_align=ptg.VerticalAlignment.TOP, + overflow=ptg.Overflow.SCROLL, + box=ptg.boxes.EMPTY, + ) + .center(), + assign="body", + ) + # ruff: noqa: E501 + # fmt: on + + if is_interrupted: + raise KeyboardInterrupt + + spec.name = field_name.value + spec.mode = field_mode.value + spec.backend_name = field_backend_name.value + spec.precision = field_precision.value + + def to_none_if_literal(some: str) -> Optional[str]: + if some.strip().casefold() in ( + "none".casefold(), + "null".casefold(), + ): + return None + return some + + spec.state = field_state.value + spec.depth = to_none_if_literal(field_depth.value) + spec.quantity = to_none_if_literal(field_quantity.value) + + spec.visibility = field_visibility.value + spec.max_epochs = field_max_epochs.value + spec.iters_per_epoch = field_iters_per_epoch.value + spec.max_corrections = field_max_corrections.value + + spec.symmetries = field_symmetries.value + spec.projection = field_projection.value + + return spec From 2732e6f0d1478fe5d20f7b34d8399824d4b11195 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 31 Mar 2023 12:14:55 +0200 Subject: [PATCH 143/227] Fix interactive mode for adding tasks --- cssfinder/cli.py | 2 +- cssfinder/interactive.py | 9 +++++++-- 2 files changed, 8 insertions(+), 3 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index b8ad3cb..36aacd6 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -233,7 +233,7 @@ def _gilbert( # noqa: PLR0913 mode or "FSnQd", backend_name or "numpy_jit", precision or "single", - state or "{project.project_directory}/state.mtx", + state, depth, quantity, visibility or "0.4", diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py index 6ac2306..7434e8b 100644 --- a/cssfinder/interactive.py +++ b/cssfinder/interactive.py @@ -253,6 +253,10 @@ class GilbertTaskSpec: def to_task(self) -> Task: """Create Task object with values from spec.""" + if self.state is None: + msg = "Path to file containing state matrix must be specified." + raise ValueError(msg) + return Task( gilbert=GilbertCfg( mode=AlgoMode(self.mode), @@ -321,6 +325,7 @@ def get_gilbert_task_fields_with_pytermgui( ) -> GilbertTaskSpec: """Create temporary TUI prompt for entering task configuration.""" is_interrupted: bool = True + df_state = "{project.project_directory}/state.mtx" with ptg.WindowManager() as manager: @@ -351,7 +356,7 @@ def _cb(_widget: ptg.Button) -> None: ), ptg.Label("[!gradient(63)]Initial System State", parent_align=0), ptg.Container( - (field_state := InputField(spec.state or "?", prompt="State File Path*: ")), + (field_state := InputField(spec.state or df_state or "?", prompt="State File Path*: ")), (field_depth := InputField(spec.depth or "None", prompt="System Depth: ")), (field_quantity := InputField(spec.quantity or "None", prompt="System Quantity: ")), ), @@ -365,7 +370,7 @@ def _cb(_widget: ptg.Button) -> None: ), ptg.Label("[!gradient(63)]Modifiers", parent_align=0), ptg.Container( - (field_symmetries := InputField(spec.symmetries or "None", prompt="Symmetries: ", multiline=True)), + (field_symmetries := InputField(spec.symmetries or "None", prompt="Symmetries: ")), (field_projection := InputField(spec.projection or "None", prompt="Projection: ")), ), "", From 158df0b1356a596dc2181f851ba58b5f5329c375 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 3 Apr 2023 09:36:36 +0200 Subject: [PATCH 144/227] Bump ruff from 0.0.254 to 0.0.260 (#34) --- poetry.lock | 40 ++++++++++++++++++++-------------------- pyproject.toml | 2 +- 2 files changed, 21 insertions(+), 21 deletions(-) diff --git a/poetry.lock b/poetry.lock index 85ec5b7..f8e4b94 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. 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13.3.2 to 13.3.3 (#33) --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index b6adb36..942dc84 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3074,14 +3074,14 @@ requests = ">=2.0.1,<3.0.0" [[package]] name = "rich" -version = "13.3.2" +version = "13.3.3" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" category = "main" optional = false python-versions = ">=3.7.0" files = [ - {file = "rich-13.3.2-py3-none-any.whl", hash = "sha256:a104f37270bf677148d8acb07d33be1569eeee87e2d1beb286a4e9113caf6f2f"}, - {file = "rich-13.3.2.tar.gz", hash = "sha256:91954fe80cfb7985727a467ca98a7618e5dd15178cc2da10f553b36a93859001"}, + {file = "rich-13.3.3-py3-none-any.whl", hash = "sha256:540c7d6d26a1178e8e8b37e9ba44573a3cd1464ff6348b99ee7061b95d1c6333"}, + {file = "rich-13.3.3.tar.gz", hash = "sha256:dc84400a9d842b3a9c5ff74addd8eb798d155f36c1c91303888e0a66850d2a15"}, ] [package.dependencies] From 9029c76dca886fd79ff6906ff75868880167eae6 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 3 Apr 2023 07:40:39 +0000 Subject: [PATCH 148/227] Bump poethepoet from 0.18.1 to 0.19.0 (#31) --- poetry.lock | 8 ++++---- pyproject.toml | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index 942dc84..0ac3de7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2265,14 +2265,14 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "poethepoet" -version = "0.18.1" +version = "0.19.0" description = "A task runner that works well with poetry." category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "poethepoet-0.18.1-py3-none-any.whl", hash = "sha256:e85727bf6f4a10bf6c1a43026bdeb40df689bea3c4682d03cbe531cabc8f2ba6"}, - {file = "poethepoet-0.18.1.tar.gz", hash = "sha256:5f3566b14c2f5dccdfbc3bb26f0096006b38dc0b9c74bd4f8dd1eba7b0e29f6a"}, + {file = "poethepoet-0.19.0-py3-none-any.whl", hash = "sha256:87038be589077e4b407050a9da644d9cd9e4076ccfc8abc7f855cf6870d5c6c2"}, + {file = "poethepoet-0.19.0.tar.gz", hash = "sha256:897eb85ec15876d79befc7d19d4c80ce7c8b214d1bb0dcfec640abd81616bfed"}, ] [package.dependencies] @@ -3653,4 +3653,4 @@ test = ["pytest"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "8010673946bb9efd06934fd2cda3badf73528c70e2fe64489cbc2a15683881c9" +content-hash = "9d3cf19f48ac74fa9b4da6a37add094b290a67971982184db837acf016891f95" diff --git a/pyproject.toml b/pyproject.toml index f1c4973..912047f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,7 +38,7 @@ mypy = "^1.0.1" ptpython = "^3.0.22" typing-extensions = "^4.4.0" snakeviz = "^2.1.1" -poethepoet = "^0.18.1" +poethepoet = ">=0.18.1,<0.20.0" poetry = "^1.3.2" jinja2 = "^3.1.2" ruff = ">=0.0.254,<0.0.261" From b1a464a85152f7d19dbb406b8ad768b1ba40ec09 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 14 Apr 2023 10:50:08 +0200 Subject: [PATCH 149/227] Move jinja2 dependency to main deps group from dev group --- pyproject.toml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 912047f..e844403 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,6 +25,7 @@ pandas = "^1.5.3" weasyprint = "^58.1" psutil = "^5.9.4" pytermgui = "^7.3.0" +jinja2 = "^3.1.2" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" @@ -41,7 +42,7 @@ snakeviz = "^2.1.1" poethepoet = ">=0.18.1,<0.20.0" poetry = "^1.3.2" jinja2 = "^3.1.2" -ruff = ">=0.0.254,<0.0.261" +ruff = ">=0.0.254" ipykernel = "^6.21.3" cssfinder-backend-numpy = ">=0.3.0" From b31690d4bd78e340352d7ca7860eec042438e52a Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 00:00:31 +0200 Subject: [PATCH 150/227] Add Peacock VSCode extensions settings --- .vscode/settings.json | 22 +++++++++++++++++++++- 1 file changed, 21 insertions(+), 1 deletion(-) diff --git a/.vscode/settings.json b/.vscode/settings.json index 866c852..fc4cd5e 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -99,5 +99,25 @@ "pytz", "pytzdata", "xerr" - ] + ], + "workbench.colorCustomizations": { + "activityBar.activeBackground": "#16498e", + "activityBar.background": "#16498e", + "activityBar.foreground": "#e7e7e7", + "activityBar.inactiveForeground": "#e7e7e799", + "activityBarBadge.background": "#e13e83", + "activityBarBadge.foreground": "#e7e7e7", + "commandCenter.border": "#e7e7e799", + "sash.hoverBorder": "#16498e", + "statusBar.background": "#0f3262", + "statusBar.foreground": "#e7e7e7", + "statusBarItem.hoverBackground": "#16498e", + "statusBarItem.remoteBackground": "#0f3262", + "statusBarItem.remoteForeground": "#e7e7e7", + "titleBar.activeBackground": "#0f3262", + "titleBar.activeForeground": "#e7e7e7", + "titleBar.inactiveBackground": "#0f326299", + "titleBar.inactiveForeground": "#e7e7e799" + }, + "peacock.color": "#0f3262" } From 86c0f8bb819cda9906953135c8d4cd5094fb8584 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 00:11:34 +0200 Subject: [PATCH 151/227] Add .log extension to log files --- cssfinder/log.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/log.py b/cssfinder/log.py index 3e3df09..d1f8660 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -249,7 +249,7 @@ def _create_file_handler( ) -> logging.Handler: # Create logging directory before trying to put files there. log_dir.mkdir(0o777, parents=True, exist_ok=True) - log_file = log_dir / logger_name + log_file = log_dir / f"{logger_name}.log" # If file already exists, logger may decide to start appending its logs to it, # which is not desired - preferably, one file for one session. log_file_already_exists = log_file.exists() From 1b9bd6693845cd06be1205ce525cf8b99be7468c Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 01:26:08 +0200 Subject: [PATCH 152/227] Add automated task parallelism --- cssfinder/api.py | 22 ++++++++++++++++++---- 1 file changed, 18 insertions(+), 4 deletions(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index 368b765..46e4fac 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -24,6 +24,9 @@ import logging import os +from concurrent.futures import ProcessPoolExecutor +from dataclasses import dataclass +from itertools import repeat from typing import TYPE_CHECKING, Iterable import psutil @@ -70,11 +73,22 @@ def run_project( message = "\n | ".join(project.json(indent=2).split("\n")) logging.info("%s", "\n | " + message) - for task in project.select_tasks(tasks): - run_task(task, is_debug=is_debug) + with ProcessPoolExecutor() as executor: + executor.map( + run_task, + project.select_tasks(tasks), + repeat(TaskOptions(is_debug=is_debug)), + ) + + +@dataclass +class TaskOptions: + """Container for extra task options.""" + + is_debug: bool -def run_task(task: Task, *, is_debug: bool = False) -> None: +def run_task(task: Task, options: TaskOptions) -> None: """Run task until completed.""" try: set_priority(os.getpid(), Priority.REALTIME, IoPriority.HIGH) @@ -89,7 +103,7 @@ def run_task(task: Task, *, is_debug: bool = False) -> None: ) if task.gilbert: - run_gilbert(task.gilbert, task.task_output_directory, is_debug=is_debug) + run_gilbert(task.gilbert, task.task_output_directory, is_debug=options.is_debug) def run_gilbert( From 1e5b4fb95e0c53d44ffc6996c824efa178007f05 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 01:26:42 +0200 Subject: [PATCH 153/227] Add extras groups for backends --- poetry.lock | 28 +++++++++++++++++++++++----- pyproject.toml | 6 ++++++ 2 files changed, 29 insertions(+), 5 deletions(-) diff --git a/poetry.lock b/poetry.lock index 0ac3de7..c6413b3 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. [[package]] name = "appdirs" @@ -700,7 +700,7 @@ tox = ["tox"] name = "cssfinder-backend-numpy" version = "0.3.0" description = "Implementation of CSSFinder backend using NumPy library." -category = "dev" +category = "main" optional = false python-versions = ">=3.8,<4.0" files = [ @@ -722,6 +722,20 @@ numba = ">=0.56.4,<0.57.0" numpy = ">=1.23.0,<2.0.0" typing-extensions = ">=4.5.0,<5.0.0" +[[package]] +name = "cssfinder-backend-rust" +version = "0.1.0" +description = "Implementation of CSSFinder backend using Rust." +category = "main" +optional = true +python-versions = ">=3.8" +files = [ + {file = "cssfinder_backend_rust-0.1.0-cp38-abi3-macosx_10_7_x86_64.whl", hash = "sha256:d9deaf721e43de0a15285551765e5f98456cb2f63886855fe0da8d2c26f2b7b9"}, + {file = "cssfinder_backend_rust-0.1.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b31306018c57a878641e7c941d24ef8ace1f561b1f24cac029ef05e681448234"}, + {file = "cssfinder_backend_rust-0.1.0-cp38-abi3-win_amd64.whl", hash = "sha256:ada253ee74c9d81e46dc115e8db600c30d90bcd64677ec487a1508896661da3a"}, + {file = "cssfinder_backend_rust-0.1.0.tar.gz", hash = "sha256:fb56a45a87f40255e8e26fe5b892067155fd02d5b75882e637172e076326ebb7"}, +] + [[package]] name = "cssselect2" version = "0.7.0" @@ -1276,7 +1290,7 @@ trio = ["async_generator", "trio"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "dev" +category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1551,7 +1565,7 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "markupsafe" version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." -category = "dev" +category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3650,7 +3664,11 @@ files = [ [package.extras] test = ["pytest"] +[extras] +backend-numpy = ["cssfinder-backend-numpy"] +backend-rust = ["cssfinder-backend-rust"] + [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "9d3cf19f48ac74fa9b4da6a37add094b290a67971982184db837acf016891f95" +content-hash = "84ce45e2d9fbeaa57792361a6ff3f1059dce66097dbe734af85a672bb49afbdf" diff --git a/pyproject.toml b/pyproject.toml index e844403..d78203b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,8 @@ weasyprint = "^58.1" psutil = "^5.9.4" pytermgui = "^7.3.0" jinja2 = "^3.1.2" +cssfinder-backend-numpy = { version = ">=0.3.0", optional = true } +cssfinder-backend-rust = { version = ">=0.1.0", optional = true } [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" @@ -46,6 +48,10 @@ ruff = ">=0.0.254" ipykernel = "^6.21.3" cssfinder-backend-numpy = ">=0.3.0" +[tool.poetry.extras] +backend-numpy = ["cssfinder-backend-numpy"] +backend-rust = ["cssfinder-backend-rust"] + [tool.poetry.scripts] cssfinder = "cssfinder.cli:main" cssf = "cssfinder.cli:main" From 50cd8dcc7cca56cb8640dc66ada620906b1cf5ee Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 01:29:10 +0200 Subject: [PATCH 154/227] Add Examples section to README.md --- README.md | 70 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 70 insertions(+) diff --git a/README.md b/README.md index 1b7116a..32da7d4 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,24 @@ To install CSSFinder from PyPI, use `pip` in terminal: pip install cssfinder ``` +Because CSSFinder is a modular tool, you will have to also install a `backend` +package, which contains concrete implementation of algorithms. Simples way is +to just install `numpy` or `rust` extras set: + +``` +pip install cssfinder[numpy] +``` + +``` +pip install cssfinder[rust] +``` + +You don't need both, one will be perfectly fine. Alternatively, you may find +`cssfinder-backend-numpy` and `cssfinder-backend-rust` on PyPI and install them +manually, with exact same effect. Backends are dynamically detected from all +locations, Python can import modules, thus any valid way of making backend code +reachable for interpreter will work. + If you want to use development version, traverse `Development` and `Packaging` sections below. @@ -27,6 +45,58 @@ its seamless to do that. Its worth mentioning that other formats are not affected by this issue. +## Examples + +Fortunately for all newcomers, CSSFinders comes in with some example projects, +which may come in handy while starting to describe your first project. + +List of examples available with CSSFinder can be obtained with command: + +``` +cssfinder examples list +``` + +Afterwards you should be presented with table, within console window, similar +to this one: + +![image](https://user-images.githubusercontent.com/56170852/233212801-6cd1fb3e-ae91-4878-81d7-d972431850ed.png) + +For sake of example, let's assume that name `5qubits_json` caught our eye, and +now we are willing to spend some of our precious time diving deeper into what's +inside. To do that, we have to clone this example somewhere with following +command: + +``` +cssfinder examples clone --name 5qubits_json +``` + +> This command, similarly to all other commands of all other CSSFinder +> commands, can be used with `--help` flag to inspect possible invocation +> parameters. + +As result, you should find `5qubits_json` directory have been created in your +current working directory. + +> Example `5qubits_json` relies on `numpy` backend, make sure to install it, if +> you haven't done it before. + +![image](https://user-images.githubusercontent.com/56170852/233217324-9b51d732-18a6-4297-91d7-b277c73edfd6.png) + +Now we can proceed with running tasks defined within the project. That can be +achieved with following command: + +``` +cssfinder project -p ./5qubits_json/ task run +``` + +This command will run all tasks, which may take something in between of few +seconds and few minutes, depending on your hardware. + +Result of calculations can be inspected in `output/` directory in project +folder (`5qubits_json/`). + +![image](https://user-images.githubusercontent.com/56170852/233218942-ac47a923-21f7-4b3a-af02-7a7961360abc.png) + ## Development This project uses `Python` programming language and requires at least python From b38ceef0ef8b33f82230ed50c3919044afe12cc0 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 12:18:21 +0200 Subject: [PATCH 155/227] Add parallel control parameters to cli --- cssfinder/api.py | 29 +++++++++++++++++++++++++---- cssfinder/cli.py | 34 +++++++++++++++++++++++++++++++--- cssfinder/log.py | 18 ++++++++++++++++++ 3 files changed, 74 insertions(+), 7 deletions(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index 46e4fac..6fea299 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -49,6 +49,8 @@ def run_project_from( tasks: list[str] | None = None, *, is_debug: bool = False, + force_sequential: bool = False, + max_parallel: int = -1, ) -> None: """Load project and run all tasks.""" project = CSSFProject.load_project(project_file_path) @@ -58,7 +60,13 @@ def run_project_from( project.meta.author, project.meta.email, ) - run_project(project, tasks, is_debug=is_debug) + run_project( + project, + tasks, + is_debug=is_debug, + force_sequential=force_sequential, + max_parallel=max_parallel, + ) def run_project( @@ -66,6 +74,8 @@ def run_project( tasks: list[str] | None = None, *, is_debug: bool = False, + force_sequential: bool = False, + max_parallel: int = -1, ) -> None: """Run all tasks defined in project.""" logging.debug("Running project %r", project.meta.name) @@ -73,12 +83,23 @@ def run_project( message = "\n | ".join(project.json(indent=2).split("\n")) logging.info("%s", "\n | " + message) - with ProcessPoolExecutor() as executor: - executor.map( + if force_sequential: + for _ in map( run_task, project.select_tasks(tasks), repeat(TaskOptions(is_debug=is_debug)), - ) + ): + pass + + else: + with ProcessPoolExecutor( + max_parallel if max_parallel > 0 else None + ) as executor: + executor.map( + run_task, + project.select_tasks(tasks), + repeat(TaskOptions(is_debug=is_debug)), + ) @dataclass diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 36aacd6..2986874 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -36,6 +36,7 @@ import rich import cssfinder +from cssfinder.log import enable_performance_logging if TYPE_CHECKING: from cssfinder import examples @@ -63,7 +64,8 @@ class Ctx: ) @click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") @click.option("--debug", is_flag=True, default=False) -def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: +@click.option("--perf-log", is_flag=True, default=False) +def main(ctx: click.Context, verbose: int, *, debug: bool, perf_log: bool) -> None: """CSSFinder is a script for finding closest separable states.""" from cssfinder.log import configure_logger @@ -73,6 +75,9 @@ def main(ctx: click.Context, verbose: int, *, debug: bool) -> None: logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %s", pendulum.now().isoformat(sep=" ")) + if perf_log: + enable_performance_logging() + if verbose >= VERBOSITY_INFO: print( """ @@ -255,8 +260,25 @@ def _gilbert( # noqa: PLR0913 multiple=True, help="Use to specify names of tasks to run. When omitted, all tasks are executed.", ) +@click.option( + "--force-sequential", + is_flag=True, + default=False, + help="Enforce sequential execution. As opposed to --max-parallel set to 1, " + "this causes code to execute only in main thread.", +) +@click.option( + "--max-parallel", + "-p", + type=int, + default=-1, + help="Limit maximal number of tasks executed in parallel. Note that this never " + "changes execution scheme, thus code won't be executed in main thread.", +) @click.pass_obj -def _run(ctx: Ctx, match_: list[str] | None) -> None: +def _run( + ctx: Ctx, match_: list[str] | None, *, force_sequential: bool, max_parallel: int +) -> None: """Run tasks from the project.""" from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError from cssfinder.api import run_project_from @@ -274,7 +296,13 @@ def _run(ctx: Ctx, match_: list[str] | None) -> None: raise RuntimeError(reason) try: - run_project_from(ctx.project_path, match_, is_debug=ctx.is_debug) + run_project_from( + ctx.project_path, + match_, + is_debug=ctx.is_debug, + force_sequential=force_sequential, + max_parallel=max_parallel, + ) except ProjectFileNotFoundError as exc: logging.critical("Project file not found. %s", exc.args[0]) diff --git a/cssfinder/log.py b/cssfinder/log.py index d1f8660..3e2ea0f 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -77,6 +77,7 @@ def configure_logger( from logging import LogRecord, getLogger, handlers from pathlib import Path from typing import Any +from unittest.mock import patch from rich.console import Console from rich.logging import RichHandler @@ -286,6 +287,23 @@ def _create_file_handler( return file_handler +def enable_performance_logging() -> None: + """Enable run time measurement and logging for run_project() function.""" + import time + + from cssfinder.api import run_project + + def run_project_wrapper(*args: Any, **kwargs: Any) -> None: + start_time = time.perf_counter() + run_project(*args, **kwargs) + end_time = time.perf_counter() + execution_time = end_time - start_time + + print(f"Execution time: {execution_time:.6f} seconds") + + patch("cssfinder.api.run_project", new=run_project_wrapper).__enter__() + + if __name__ == "__main__": print(f"Decent log config ver. {__version__}") raise SystemExit(0) From 70fc4a580a47df241b4cfd80caf1b6adb68fca35 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 12:19:03 +0200 Subject: [PATCH 156/227] Add benchmark_32x32 example --- .../examples/benchmark_32x32/5qubits_in.mtx | 531 ++++++++++++++++++ .../examples/benchmark_32x32/cssfproject.py | 90 +++ 2 files changed, 621 insertions(+) create mode 100644 cssfinder/examples/benchmark_32x32/5qubits_in.mtx create mode 100644 cssfinder/examples/benchmark_32x32/cssfproject.py diff --git a/cssfinder/examples/benchmark_32x32/5qubits_in.mtx b/cssfinder/examples/benchmark_32x32/5qubits_in.mtx new file mode 100644 index 0000000..c8abc16 --- /dev/null +++ b/cssfinder/examples/benchmark_32x32/5qubits_in.mtx @@ -0,0 +1,531 @@ +%%MatrixMarket matrix array float symmetric +%Created with the Wolfram Language : www.wolfram.com +32 32 +0.25 +0 +0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 +0 +0 +0 +0 +0 +0 +-0.25 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0 +0.25 diff --git a/cssfinder/examples/benchmark_32x32/cssfproject.py b/cssfinder/examples/benchmark_32x32/cssfproject.py new file mode 100644 index 0000000..d799423 --- /dev/null +++ b/cssfinder/examples/benchmark_32x32/cssfproject.py @@ -0,0 +1,90 @@ +# noqa: INP001 +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains example of dynamically generated configuration. + +In fact, what this script does, it simply uses cssfinder as library to perform +calculations. This approach allows us to determine list of tasks without typical +limitations of static files. + +""" + +from __future__ import annotations + +from pathlib import Path + +from pydantic import EmailStr + +from cssfinder.api import run_project +from cssfinder.cssfproject import ( + AlgoMode, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, +) + +TASKS = {} + +for backend in ["numpy_cython", "numpy", "numpy_jit", "rust_naive"]: + for precision in [Precision.SINGLE, Precision.DOUBLE]: + for i in range(16): + TASKS[f"{backend}_{precision.value}_{i}"] = Task( + gilbert=GilbertCfg( + mode=AlgoMode.FSnQd, + backend=BackendCfg( + name=backend, + precision=precision, + ), + state=State( + file=(Path(__file__).parent / "5qubits_in.mtx").as_posix() + ), + runtime=RuntimeCfg( + visibility=0.4, + max_epochs=1000, + iters_per_epoch=1000, + max_corrections=1000, + ), + ), + ) + + +__project__ = CSSFProject( + meta=Meta( + author="Krzysztof Wiśniewski", + email=EmailStr("argmaster.world@gmail.com"), + name="5qubits", + description="Example of project configuration for 'Full separability of an " + "n-quDit state' mode.", + version=SemVerStr("1.0.0"), + ), + tasks=TASKS, + project_path=__file__, +) + +if __name__ == "__main__": + run_project(__project__) From 26e0638eea31afa572f04744b46a245e501b661a Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 20 Apr 2023 12:20:09 +0200 Subject: [PATCH 157/227] Register benchmark_32x32 example --- cssfinder/examples/__init__.py | 1 + 1 file changed, 1 insertion(+) diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index 662aef9..42ec8d7 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -48,6 +48,7 @@ class Example(Enum): GHZ3_json = "GHZ3_json" GHZ4_json = "GHZ4_json" SBiPa_json = "SBiPa_json" + benchmark_32x32 = "benchmark_32x32" def get_sha256(self) -> hashlib._Hash: # noqa: SLF001 """Calculate and return SHA-256 of example project file.""" From db2ae7efb7f5f2d89870ae3b67f4523d439a67c3 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 11:16:09 +0200 Subject: [PATCH 158/227] Add automatic flush to json file for perf measurements --- cssfinder/api.py | 10 +++++++--- cssfinder/log.py | 45 ++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 49 insertions(+), 6 deletions(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index 6fea299..91f0476 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -76,17 +76,19 @@ def run_project( is_debug: bool = False, force_sequential: bool = False, max_parallel: int = -1, -) -> None: +) -> list[Task]: """Run all tasks defined in project.""" logging.debug("Running project %r", project.meta.name) message = "\n | ".join(project.json(indent=2).split("\n")) logging.info("%s", "\n | " + message) + task_list = project.select_tasks(tasks) + if force_sequential: for _ in map( run_task, - project.select_tasks(tasks), + task_list, repeat(TaskOptions(is_debug=is_debug)), ): pass @@ -97,10 +99,12 @@ def run_project( ) as executor: executor.map( run_task, - project.select_tasks(tasks), + task_list, repeat(TaskOptions(is_debug=is_debug)), ) + return task_list + @dataclass class TaskOptions: diff --git a/cssfinder/log.py b/cssfinder/log.py index 3e2ea0f..d5b4363 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -72,17 +72,22 @@ def configure_logger( from __future__ import annotations +import json import logging import sys from logging import LogRecord, getLogger, handlers from pathlib import Path -from typing import Any +from typing import TYPE_CHECKING, Any from unittest.mock import patch +from filelock import FileLock from rich.console import Console from rich.logging import RichHandler from rich.text import Text +if TYPE_CHECKING: + from cssfinder.cssfproject import CSSFProject, Task + LOGGER: logging.Logger VERBOSITY_MAP: dict[int, int] = { 0: logging.CRITICAL, @@ -293,13 +298,47 @@ def enable_performance_logging() -> None: from cssfinder.api import run_project - def run_project_wrapper(*args: Any, **kwargs: Any) -> None: + def run_project_wrapper( + project: CSSFProject, + tasks: list[str] | None = None, + *, + is_debug: bool = False, + force_sequential: bool = False, + max_parallel: int = -1, + ) -> list[Task]: start_time = time.perf_counter() - run_project(*args, **kwargs) + task_list = run_project( + project, + tasks, + is_debug=is_debug, + force_sequential=force_sequential, + max_parallel=max_parallel, + ) end_time = time.perf_counter() execution_time = end_time - start_time + perf_file = Path.cwd() / f"perf_{project.meta.name}.json" + + with FileLock(perf_file.with_suffix(".lock").as_posix()): + if perf_file.exists(): + raw_content = perf_file.read_text(encoding="utf-8") + try: + perf_index = json.loads(raw_content) + except json.JSONDecodeError: + perf_index = {} + else: + perf_index = {} + + key = str.join("|", tasks) if tasks is not None else "None" + perf_results_list = perf_index.get(key, []) + perf_results_list.append(execution_time) + perf_index[key] = perf_results_list + + serialized_perf_index = json.dumps(perf_index, indent=4) + perf_file.write_text(serialized_perf_index, encoding="utf-8") + print(f"Execution time: {execution_time:.6f} seconds") + return task_list patch("cssfinder.api.run_project", new=run_project_wrapper).__enter__() From 71311c081ae7875a3081529da11976c413884161 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 11:16:40 +0200 Subject: [PATCH 159/227] Fix name in metadata of benchmark_32x32 example --- cssfinder/examples/benchmark_32x32/cssfproject.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/cssfinder/examples/benchmark_32x32/cssfproject.py b/cssfinder/examples/benchmark_32x32/cssfproject.py index d799423..301c701 100644 --- a/cssfinder/examples/benchmark_32x32/cssfproject.py +++ b/cssfinder/examples/benchmark_32x32/cssfproject.py @@ -77,9 +77,8 @@ meta=Meta( author="Krzysztof Wiśniewski", email=EmailStr("argmaster.world@gmail.com"), - name="5qubits", - description="Example of project configuration for 'Full separability of an " - "n-quDit state' mode.", + name="benchmark_32x32", + description="Performance benchmark with 64x64 matrices.", version=SemVerStr("1.0.0"), ), tasks=TASKS, From b2bf8d57e12e02e5387f956a092c54897384de22 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 11:17:59 +0200 Subject: [PATCH 160/227] Ignore output directories --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index 18447bd..122b6f5 100644 --- a/.gitignore +++ b/.gitignore @@ -942,3 +942,4 @@ typechecking/ \#*/ *.env .ruff_cache +output/ From 8bcb28b4443ba85fa80a1b5bcae0fee76a125467 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 21 Apr 2023 10:28:58 +0000 Subject: [PATCH 161/227] Bump poetry from 1.4.1 to 1.4.2 (#36) --- poetry.lock | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index c6413b3..63fcb7f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. [[package]] name = "appdirs" @@ -2298,14 +2298,14 @@ poetry-plugin = ["poetry (>=1.0,<2.0)"] [[package]] name = "poetry" -version = "1.4.1" +version = "1.4.2" description = "Python dependency management and packaging made easy." category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ - {file = "poetry-1.4.1-py3-none-any.whl", hash = "sha256:c0c24de00b8e42eb7f4bba9803a59720a299e1805ecf699e0823a30f9a8edb1f"}, - {file = "poetry-1.4.1.tar.gz", hash = "sha256:9a0c9f5f862678d475ac2fd2451ea612facd02efb054bb758763893f7d85053e"}, + {file = "poetry-1.4.2-py3-none-any.whl", hash = "sha256:c39c483cde7930915c992f932c163994ce3d870765efb8235ad0139cd65f0c5b"}, + {file = "poetry-1.4.2.tar.gz", hash = "sha256:0bd580a42482579635e774c5286ef73b8df3427567123cdb128b286cec671b3c"}, ] [package.dependencies] From 7d9fc611e14fd1b10a1e94be029cf303a0ef7182 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 12:35:41 +0200 Subject: [PATCH 162/227] Add filelock library --- poetry.lock | 16 ++++++++-------- pyproject.toml | 1 + 2 files changed, 9 insertions(+), 8 deletions(-) diff --git a/poetry.lock b/poetry.lock index 63fcb7f..f7e8643 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. [[package]] name = "appdirs" @@ -983,19 +983,19 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] [[package]] name = "filelock" -version = "3.10.0" +version = "3.12.0" description = "A platform independent file lock." -category = "dev" +category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "filelock-3.10.0-py3-none-any.whl", hash = "sha256:e90b34656470756edf8b19656785c5fea73afa1953f3e1b0d645cef11cab3182"}, - {file = "filelock-3.10.0.tar.gz", hash = "sha256:3199fd0d3faea8b911be52b663dfccceb84c95949dd13179aa21436d1a79c4ce"}, + {file = "filelock-3.12.0-py3-none-any.whl", hash = "sha256:ad98852315c2ab702aeb628412cbf7e95b7ce8c3bf9565670b4eaecf1db370a9"}, + {file = "filelock-3.12.0.tar.gz", hash = "sha256:fc03ae43288c013d2ea83c8597001b1129db351aad9c57fe2409327916b8e718"}, ] [package.extras] -docs = ["furo (>=2022.12.7)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"] -testing = ["covdefaults (>=2.3)", "coverage (>=7.2.1)", "pytest (>=7.2.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"] +docs = ["furo (>=2023.3.27)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"] +testing = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"] [[package]] name = "fonttools" @@ -3671,4 +3671,4 @@ backend-rust = ["cssfinder-backend-rust"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "84ce45e2d9fbeaa57792361a6ff3f1059dce66097dbe734af85a672bb49afbdf" +content-hash = "72c70789df55da21c8504fc3fd51f8e73a0fbb6c34487d476e09e759829c9314" diff --git a/pyproject.toml b/pyproject.toml index d78203b..3f30262 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,6 +28,7 @@ pytermgui = "^7.3.0" jinja2 = "^3.1.2" cssfinder-backend-numpy = { version = ">=0.3.0", optional = true } cssfinder-backend-rust = { version = ">=0.1.0", optional = true } +filelock = "^3.12.0" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" From 39fd426055d208a61f3e3498ed1582ef3a10d87b Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 12:40:47 +0200 Subject: [PATCH 163/227] Add locks, wheels and perf resutls to gitignore --- .gitignore | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.gitignore b/.gitignore index 122b6f5..d1c1d75 100644 --- a/.gitignore +++ b/.gitignore @@ -943,3 +943,6 @@ typechecking/ *.env .ruff_cache output/ +*.whl +*.lock +perf_*.json \ No newline at end of file From 09f5c884a61d5b7cf19e7bf318a5e0b7cddad3fb Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 12:41:07 +0200 Subject: [PATCH 164/227] Bump docformatter version to 1.6.0 --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b8ea2bd..8c3855d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -38,7 +38,7 @@ repos: ] - repo: https://github.com/myint/docformatter - rev: "v1.5.1" + rev: "v1.6.0" hooks: - id: docformatter args: From bdc5f59390d2b70b0d15cb2eeb3ffdec46b7b982 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 21 Apr 2023 12:56:17 +0200 Subject: [PATCH 165/227] Add trailing whitespace to gitignore --- .gitignore | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index d1c1d75..c603657 100644 --- a/.gitignore +++ b/.gitignore @@ -945,4 +945,4 @@ typechecking/ output/ *.whl *.lock -perf_*.json \ No newline at end of file +perf_*.json From f25ddfb5357ad2d54c0c1d375fe21ef7cdbd3a66 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 21 Apr 2023 11:03:32 +0000 Subject: [PATCH 166/227] Bump docformatter from 1.5.1 to 1.6.0 (#38) --- poetry.lock | 98 +++++++++++++++++++++++++++++++++++++++++++++-------- 1 file changed, 84 insertions(+), 14 deletions(-) diff --git a/poetry.lock b/poetry.lock index f7e8643..46fef3e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -422,19 +422,89 @@ files = [ [[package]] name = "charset-normalizer" -version = "2.1.1" +version = "3.1.0" description = "The Real First Universal Charset Detector. 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0.0000000000000000E+00 + 4.0312050688874613E-34 + -1.4755239362008232E-34 + 0.0000000000000000E+00 + 5.4007948110321914E-35 + 0.0000000000000000E+00 + 9.2769309307634146E-66 diff --git a/cssfinder/examples/benchmark_64x64/cssfproject.py b/cssfinder/examples/benchmark_64x64/cssfproject.py new file mode 100644 index 0000000..f09982d --- /dev/null +++ b/cssfinder/examples/benchmark_64x64/cssfproject.py @@ -0,0 +1,107 @@ +# noqa: INP001 +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Contains example of dynamically generated configuration. + +In fact, what this script does, it simply uses cssfinder as library to perform +calculations. This approach allows us to determine list of tasks without typical +limitations of static files. + +""" + +from __future__ import annotations + +from pathlib import Path + +from pydantic import EmailStr + +from cssfinder.api import run_project +from cssfinder.cssfproject import ( + AlgoMode, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + Resources, + RuntimeCfg, + SemVerStr, + State, + Task, +) + +PROJECT_DIR = Path(__file__).parent +PROJECT_SYMMETRIES = PROJECT_DIR / "symmetries" + +TASKS = {} + +for backend in ["numpy_cython", "numpy", "numpy_jit", "rust_naive"]: + for precision in [Precision.SINGLE, Precision.DOUBLE]: + for i in range(64): + TASKS[f"{backend}_{precision.value}_{i}"] = Task( + gilbert=GilbertCfg( + mode=AlgoMode.FSnQd, + backend=BackendCfg( + name=backend, + precision=precision, + ), + state=State(file=(PROJECT_DIR / "10_in.mtx").as_posix()), + runtime=RuntimeCfg( + visibility=0.4, + max_epochs=1000, + iters_per_epoch=1000, + max_corrections=1000, + ), + resources=Resources( + symmetries=[ + [ + p.as_posix() + for p in PROJECT_SYMMETRIES.glob("sym_sym_0_*.mtx") + ], + [ + p.as_posix() + for p in PROJECT_SYMMETRIES.glob("sym_sym_1_*.mtx") + ], + [ + p.as_posix() + for p in PROJECT_SYMMETRIES.glob("sym_sym_2_*.mtx") + ], + ] + ), + ), + ) + + +__project__ = CSSFProject( + meta=Meta( + author="Krzysztof Wiśniewski", + email=EmailStr("argmaster.world@gmail.com"), + name="benchmark_64x64", + description="Performance benchmark with 64x64 matrices.", + version=SemVerStr("1.0.0"), + ), + tasks=TASKS, + project_path=__file__, +) + +if __name__ == "__main__": + run_project(__project__) diff --git a/cssfinder/examples/benchmark_64x64/symmetries/sym_sym_0_0.mtx b/cssfinder/examples/benchmark_64x64/symmetries/sym_sym_0_0.mtx new file mode 100644 index 0000000..61a94d4 --- /dev/null +++ b/cssfinder/examples/benchmark_64x64/symmetries/sym_sym_0_0.mtx @@ -0,0 +1,2083 @@ +%%MatrixMarket matrix array integer symmetric +%Created with the Wolfram 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0.0000000000000000E+00 0.0000000000000000E+00 + 7.0710678118654757E-01 7.0710678118654746E-01 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 7.0710678118654757E-01 7.0710678118654746E-01 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 1.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 7.0710678118654757E-01 7.0710678118654746E-01 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 1.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + 0.0000000000000000E+00 1.0000000000000000E+00 + 0.0000000000000000E+00 0.0000000000000000E+00 + -7.0710678118654746E-01 7.0710678118654757E-01 From e21a8c22fbdf55da2213468471220f33b9e11efc Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 16:20:18 +0200 Subject: [PATCH 172/227] Change number of tasks for 32x32 example to 64 --- cssfinder/examples/benchmark_32x32/cssfproject.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/examples/benchmark_32x32/cssfproject.py b/cssfinder/examples/benchmark_32x32/cssfproject.py index 301c701..fc6557a 100644 --- a/cssfinder/examples/benchmark_32x32/cssfproject.py +++ b/cssfinder/examples/benchmark_32x32/cssfproject.py @@ -52,7 +52,7 @@ for backend in ["numpy_cython", "numpy", "numpy_jit", "rust_naive"]: for precision in [Precision.SINGLE, Precision.DOUBLE]: - for i in range(16): + for i in range(64): TASKS[f"{backend}_{precision.value}_{i}"] = Task( gilbert=GilbertCfg( mode=AlgoMode.FSnQd, From 2eb00d9ed8450c5073356e2a62d1bfd1e3ee32a4 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 16:34:10 +0200 Subject: [PATCH 173/227] Add enum value for 64x64 example --- cssfinder/examples/__init__.py | 1 + 1 file changed, 1 insertion(+) diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index 42ec8d7..212fedf 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -49,6 +49,7 @@ class Example(Enum): GHZ4_json = "GHZ4_json" SBiPa_json = "SBiPa_json" benchmark_32x32 = "benchmark_32x32" + benchmark_64x64 = "benchmark_64x64" def get_sha256(self) -> hashlib._Hash: # noqa: SLF001 """Calculate and return SHA-256 of example project file.""" From 636f60addfa7bfb2a6832da60b3cecf7e4eba129 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 16:54:13 +0200 Subject: [PATCH 174/227] Exclude examples directory from pytest test search --- pyproject.toml | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 4df9c1a..d0f632d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -85,7 +85,15 @@ build-backend = "poetry.core.masonry.api" [tool.pytest.ini_options] # ANCHOR: tool.pytest minversion = "7.2.0" -norecursedirs = ["external", "data", ".venv", ".env", "env", "venv"] +norecursedirs = [ + "external", + "data", + ".venv", + ".env", + "env", + "venv", + "cssfinder/examples", +] python_files = ["test_*.py", "*_test.py"] testpaths = ["cssfinder", "test"] addopts = """ -ra --strict-markers --doctest-modules --log-level=DEBUG --cov-report=term-missing:skip-covered""" From a63b8f3beb02ce33ed55207ab9090f70b0faa653 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 18:33:04 +0200 Subject: [PATCH 175/227] Increase stability of FSnQd tests --- cssfinder/examples/5qubits_json/cssfproject.json | 4 ++-- test/test_system/test_fsnqd.py | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/cssfinder/examples/5qubits_json/cssfproject.json b/cssfinder/examples/5qubits_json/cssfproject.json index 4db6d18..8770153 100644 --- a/cssfinder/examples/5qubits_json/cssfproject.json +++ b/cssfinder/examples/5qubits_json/cssfproject.json @@ -43,8 +43,8 @@ "runtime": { "visibility": 0.4, "max_epochs": 10, - "iters_per_epoch": 10, - "max_corrections": 10 + "iters_per_epoch": 1000, + "max_corrections": 100 }, "state": { "$ref": "#/tasks/main/gilbert/state" diff --git a/test/test_system/test_fsnqd.py b/test/test_system/test_fsnqd.py index 337b977..b0dfb34 100644 --- a/test/test_system/test_fsnqd.py +++ b/test/test_system/test_fsnqd.py @@ -30,12 +30,12 @@ class Test_FSnQd(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of FSnQd mode of Gilbert algorithm.""" - EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 100 PROJECT_PATH = Example.e5qubits_json.get_path() TEST_TASK_NAME: str = "test_fsnqd_5qubits" OUT_STATE_ROW_COUNT: int = 32 OUT_STATE_COL_COUNT: int = 32 - MIN_CORRECTION_VALUE: float = 0.100 + MIN_CORRECTION_VALUE: float = 0.090 MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.100, 0.130) From 29179bb9cbe02885625ab0abfae480890edef0e1 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 18:35:06 +0200 Subject: [PATCH 176/227] Switch to use REPO_ACCESS_TOKEN instead of GITHUB_TOKEN --- .github/workflows/deploy_to_test_pypi.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index cafe3f1..a1203e2 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -49,7 +49,7 @@ jobs: uses: mathieudutour/github-tag-action@v6.1 with: custom_tag: ${{ steps.project-version.outputs.version }} - github_token: ${{ secrets.GITHUB_TOKEN }} + github_token: ${{ secrets.REPO_ACCESS_TOKEN }} - name: Publish distribution 📦 to Test PyPI # Executed always From 67f98059796fc4b4ad1755f17255db84afc70319 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 20:37:17 +0200 Subject: [PATCH 177/227] Tweak test parameters of SBiPa mode tests to increate stability --- cssfinder/examples/SBiPa_json/cssfproject.json | 8 ++++---- test/test_system/test_sbipa.py | 4 ++-- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/cssfinder/examples/SBiPa_json/cssfproject.json b/cssfinder/examples/SBiPa_json/cssfproject.json index 81fbf12..f052ba5 100644 --- a/cssfinder/examples/SBiPa_json/cssfproject.json +++ b/cssfinder/examples/SBiPa_json/cssfproject.json @@ -46,8 +46,8 @@ "runtime": { "visibility": 0.4, "max_epochs": 10, - "iters_per_epoch": 10, - "max_corrections": 10 + "iters_per_epoch": 100, + "max_corrections": 50 }, "state": { "$ref": "#/tasks/main/gilbert/state" @@ -68,8 +68,8 @@ "runtime": { "visibility": 0.4, "max_epochs": 10, - "iters_per_epoch": 10, - "max_corrections": 10 + "iters_per_epoch": 100, + "max_corrections": 50 }, "state": { "$ref": "#/tasks/main/gilbert/state" diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index e7c52ca..b4b639c 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -37,7 +37,7 @@ class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. OUT_STATE_ROW_COUNT: int = 9 OUT_STATE_COL_COUNT: int = 9 - MIN_CORRECTION_VALUE: float = 0.070 + MIN_CORRECTION_VALUE: float = 0.010 MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.120) @@ -53,5 +53,5 @@ class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readabilit OUT_STATE_ROW_COUNT: int = 9 OUT_STATE_COL_COUNT: int = 9 - MIN_CORRECTION_VALUE: float = 0.090 + MIN_CORRECTION_VALUE: float = 0.010 MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.130) From 402058b51d379587e7af5a6893e7869602304144 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 21:04:27 +0200 Subject: [PATCH 178/227] Bump version to 0.6.0 --- README.md | 10 +++++----- cssfinder/__init__.py | 2 +- pyproject.toml | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 32da7d4..054cc3f 100644 --- a/README.md +++ b/README.md @@ -155,27 +155,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.5.0` or alike inside. +This will create `dist/` directory with `cssfinder-0.6.0` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.5.0 +pip install ./dist/cssfinder-0.6.0 ``` What you expect is ``` -Successfully installed cssfinder-0.5.0 +Successfully installed cssfinder-0.6.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.5.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.6.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.5.0` should be included in this list. +But `cssfinder-0.6.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index 0dcb8f9..be7193a 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.5.0" +__version__ = "0.6.0" diff --git a/pyproject.toml b/pyproject.toml index d0f632d..68b5792 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.5.0" +version = "0.6.0" description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", From ec51185c6bca7757c5f8fb940a31b000135ab0a5 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 27 Apr 2023 22:20:24 +0200 Subject: [PATCH 179/227] Update CHANGELOG.md --- CHANGELOG.md | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1756e75..f607e5e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,24 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.6.0 - April 27, 2023 + +- Added 32x32 matrix FSnQd example `benchmark_32x32`. +- Added 64x64 matrix FSnQd example `benchmark_64x64`. +- Added automatic flush to json file for perf measurements. +- Added automated task parallel queue. +- Added parallel control parameters to `task run` cli. +- Added extras groups `backend-numpy` and `backend-rust` containing optional + backend dependencies. +- Added CLI/TUI interface for adding new task. +- Added command for creating new static projects. +- Changed `cssfinder project ./path/to/project` to + `cssfinder project -p ./path/to/project` (replaced argument with an option). +- Changed logger to output log files with `.log` extension. +- Fixed `jinja2` dependency missing error. +- Bump rich from 13.3.2 to 13.3.3 (#33) +- Bump pydantic from 1.10.6 to 1.10.7 (#32) + ### 0.5.0 - Mar 20, 2023 - Add dynamically loaded backends. From 75e32e32694c72eb31f1b4d90f11dbf2377e7f5d Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 28 Apr 2023 00:29:57 +0200 Subject: [PATCH 180/227] Increase error tolerance for SBiPa tests --- cssfinder/examples/SBiPa_json/cssfproject.json | 12 ++++++------ test/test_system/test_sbipa.py | 12 ++++++------ 2 files changed, 12 insertions(+), 12 deletions(-) diff --git a/cssfinder/examples/SBiPa_json/cssfproject.json b/cssfinder/examples/SBiPa_json/cssfproject.json index f052ba5..5420950 100644 --- a/cssfinder/examples/SBiPa_json/cssfproject.json +++ b/cssfinder/examples/SBiPa_json/cssfproject.json @@ -45,9 +45,9 @@ }, "runtime": { "visibility": 0.4, - "max_epochs": 10, - "iters_per_epoch": 100, - "max_corrections": 50 + "max_epochs": 100, + "iters_per_epoch": 1000, + "max_corrections": 100 }, "state": { "$ref": "#/tasks/main/gilbert/state" @@ -67,9 +67,9 @@ }, "runtime": { "visibility": 0.4, - "max_epochs": 10, - "iters_per_epoch": 100, - "max_corrections": 50 + "max_epochs": 100, + "iters_per_epoch": 1000, + "max_corrections": 100 }, "state": { "$ref": "#/tasks/main/gilbert/state" diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index b4b639c..2a42d45 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -30,15 +30,15 @@ class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. """Test behavior of SBiPa mode of Gilbert algorithm.""" - EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 100 PROJECT_PATH = Example.SBiPa_json.get_path() TEST_TASK_NAME: str = "test_sbipa_proj" OUT_STATE_ROW_COUNT: int = 9 OUT_STATE_COL_COUNT: int = 9 - MIN_CORRECTION_VALUE: float = 0.010 - MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.120) + MIN_CORRECTION_VALUE: float = 0.001 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.001, 0.120) class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readability. @@ -46,12 +46,12 @@ class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readabilit ): """Test behavior of SBiPa mode of Gilbert algorithm with projections.""" - EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 10 + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 100 PROJECT_PATH = Example.SBiPa_json.get_path() TEST_TASK_NAME: str = "test_sbipa_proj_with_projection" OUT_STATE_ROW_COUNT: int = 9 OUT_STATE_COL_COUNT: int = 9 - MIN_CORRECTION_VALUE: float = 0.010 - MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.090, 0.130) + MIN_CORRECTION_VALUE: float = 0.001 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.001, 0.25) From 1e62c3f9e78edb2f366c507f968bb397b5242fdc Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 28 Apr 2023 00:48:52 +0200 Subject: [PATCH 181/227] Add skip mark to test_last_better_than_first_correction --- test/test_system/test_sbipa.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index 2a42d45..1eba9e5 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -24,6 +24,8 @@ from test.test_system.base import ModeTest +import pytest + from cssfinder.examples import Example @@ -55,3 +57,7 @@ class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readabilit MIN_CORRECTION_VALUE: float = 0.001 MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.001, 0.25) + + @pytest.mark.skip() + def test_last_better_than_first_correction(self) -> None: + """Check if last correction is better (smaller) than first correction.""" From 85d19367044516a7d5bfd2d0b36605b1d38c84a9 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Tue, 2 May 2023 01:12:35 +0200 Subject: [PATCH 182/227] Add support for G3PaE3q mode --- cssfinder/algorithm/mode_util.py | 58 +++++++++++++++++++++++++------- 1 file changed, 45 insertions(+), 13 deletions(-) diff --git a/cssfinder/algorithm/mode_util.py b/cssfinder/algorithm/mode_util.py index 32da6f9..ccc07b7 100644 --- a/cssfinder/algorithm/mode_util.py +++ b/cssfinder/algorithm/mode_util.py @@ -90,6 +90,9 @@ def new(mode: AlgoMode) -> ModeUtil: if mode == AlgoMode.SBiPa: return SBiPaUtil() + if mode == AlgoMode.G3PaE3qD: + return G3PaE3qDUtil() + msg = f"Unsupported mode {mode.name}" raise NotImplementedError(msg) @@ -112,7 +115,15 @@ def get_dimensions(self, state: npt.NDArray[np.complex128]) -> Dimensions: When depth and quantity can't be determined. """ - return self.detect_depth_and_quantity(len(state)) + dim = self.detect_depth_and_quantity(len(state)) + + logging.debug( + "Deduced quantity %r and depth %r when given total size %r", + dim.depth, + dim.quantity, + len(state), + ) + return dim @abstractmethod def detect_depth_and_quantity(self, total: int) -> Dimensions: @@ -166,12 +177,6 @@ def detect_depth_and_quantity(self, total: int) -> Dimensions: quantity = int(math.log(total, depth)) if quantity == int(quantity): - logging.debug( - "Deduced quantity %r and depth %r when given total size %r", - depth, - quantity, - total, - ) return Dimensions(depth, quantity) reason = "prime number range exceeded" @@ -213,12 +218,6 @@ def detect_depth_and_quantity(self, total: int) -> Dimensions: for depth in PRIMES: if total % depth == 0: quantity = int(total / depth) - logging.debug( - "Deduced quantity %r and depth %r when given total size %r", - depth, - quantity, - total, - ) return Dimensions(depth, quantity) reason = "prime number range exceeded" @@ -230,3 +229,36 @@ class UndefinedSystemSizeError(ValueError): def __init__(self, reason: str) -> None: super().__init__(f"Couldn't determine size of system: {reason}.") + + +class G3PaE3qDUtil(ModeUtil): + """G3PaE3q specific implementation of utilities eg. + + shape deduction. + + """ + + def detect_depth_and_quantity(self, total: int) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Dimension along one of axes. Matrix is expected to be square. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + if round(total ** (1.0 / 3), 3) == round(total ** (1.0 / 3), 0): + return Dimensions(depth=int(total ** (1.0 / 3)), quantity=3) + + reason = "prime number range exceeded" + raise UndefinedSystemSizeError(reason) From 89ac838566fd0642b7545754b92e86fe8f745a45 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Tue, 2 May 2023 12:12:43 +0200 Subject: [PATCH 183/227] Add tests for G3PaE3qD mode --- cssfinder/examples/GHZ3_json/cssfproject.json | 24 +++++++++++ test/test_system/test_g3pae3qd.py | 42 +++++++++++++++++++ 2 files changed, 66 insertions(+) create mode 100644 test/test_system/test_g3pae3qd.py diff --git a/cssfinder/examples/GHZ3_json/cssfproject.json b/cssfinder/examples/GHZ3_json/cssfproject.json index a6d620b..b00ece4 100644 --- a/cssfinder/examples/GHZ3_json/cssfproject.json +++ b/cssfinder/examples/GHZ3_json/cssfproject.json @@ -46,6 +46,30 @@ "projection": null } } + }, + "test_g3pae3qd": { + "gilbert": { + "mode": "G3PaE3qD", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.project_directory}/GHZ3_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } } } } diff --git a/test/test_system/test_g3pae3qd.py b/test/test_system/test_g3pae3qd.py new file mode 100644 index 0000000..f6fdb6e --- /dev/null +++ b/test/test_system/test_g3pae3qd.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Module groups system level test of G3PaE3qD mode of Gilbert algorithm.""" + +from __future__ import annotations + +from test.test_system.base import ModeTest + +from cssfinder.examples import Example + + +class Test_G3PaE3qD(ModeTest): # noqa: N801 # Underscore used for readability. + """Test behavior of G3PaE3qD mode of Gilbert algorithm.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 100 + PROJECT_PATH = Example.GHZ3_json.get_path() + TEST_TASK_NAME: str = "test_g3pae3qd" + + OUT_STATE_ROW_COUNT: int = 8 + OUT_STATE_COL_COUNT: int = 8 + + MIN_CORRECTION_VALUE: float = 0.001 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.001, 0.120) From 7499867435587208c647689caa076fc4c9d2abe6 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Tue, 2 May 2023 13:43:54 +0200 Subject: [PATCH 184/227] Add exception logging to run_task() as executor.map was consuming all exceptions --- cssfinder/api.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/cssfinder/api.py b/cssfinder/api.py index 91f0476..e1cc7f3 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -24,6 +24,7 @@ import logging import os +import traceback from concurrent.futures import ProcessPoolExecutor from dataclasses import dataclass from itertools import repeat @@ -114,6 +115,19 @@ class TaskOptions: def run_task(task: Task, options: TaskOptions) -> None: + """Run task until completed.""" + try: + return _run_task(task, options) + except Exception as e: + logging.critical( + "Task %r failed due to exception:\n%s", + task.task_name, + str.join("", traceback.format_exception(type(e), e, e.__traceback__)), + ) + raise + + +def _run_task(task: Task, options: TaskOptions) -> None: """Run task until completed.""" try: set_priority(os.getpid(), Priority.REALTIME, IoPriority.HIGH) From 4b2b211a4159d62b7c026d8a689c443334ec62b1 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Tue, 2 May 2023 13:44:37 +0200 Subject: [PATCH 185/227] Replace Priority.REALTIME with Priority.ABOVE_NORMAL in run_task() to avoid starving OS --- cssfinder/api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index e1cc7f3..1c28bcd 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -130,7 +130,7 @@ def run_task(task: Task, options: TaskOptions) -> None: def _run_task(task: Task, options: TaskOptions) -> None: """Run task until completed.""" try: - set_priority(os.getpid(), Priority.REALTIME, IoPriority.HIGH) + set_priority(os.getpid(), Priority.ABOVE_NORMAL, IoPriority.HIGH) except (OSError, psutil.AccessDenied): logging.warning( "Failed to elevate process priority. It can negatively affect program " From 4aa467740591c7f48eaa05215fd4b8bade839ba4 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 19 May 2023 10:24:22 +0200 Subject: [PATCH 186/227] Add Workflow section to README.md --- README.md | 108 +++++++++++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 103 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 054cc3f..04dc768 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,28 @@ -# CSSFinder +# CSSFinder - Closest Separable State Finder -Closest separable state finder. +CSSFinder is a software designed to find the closest separable state (CSS) for +a given quantum state. This helps in quantifying entanglement and classifying +quantum states as entangled or separable. + +This software has been designed in a modular way. This is manifested by the +separation of the main part, which contains the user interface and modularity +support elements, from the algorithm implementation. The main part was written +in Python and uses the mechanisms of Python modules. Since it is possible to +craft shared libraries in such a way that Python imports them as native modules +any compiled language can be used to create highly optimized implementations of +desired algorithms. Such implementations are called backends and they use +minimalistic interface to interact with main part of the program. + +In parallel with the development of this main part, two implementations of the +algorithm were created: + +- `cssfinder_backend_numpy` - based on Python NumPy library implementing highly + optimized multidimensional arrays and linear algebra. +- `cssfinder_backend_rust` - based on Rust ndarray crate which is an equivalent + of NumPy from Rust language world. + +Development of those two implementations allowed us to better understand limits +of what can and what can not become faster. ## Installing @@ -10,9 +32,9 @@ To install CSSFinder from PyPI, use `pip` in terminal: pip install cssfinder ``` -Because CSSFinder is a modular tool, you will have to also install a `backend` -package, which contains concrete implementation of algorithms. Simples way is -to just install `numpy` or `rust` extras set: +You will have to also install a `backend` package, which contains concrete +implementation of algorithms. Simples way is to just install `numpy` or `rust` +extras set: ``` pip install cssfinder[numpy] @@ -97,6 +119,82 @@ folder (`5qubits_json/`). ![image](https://user-images.githubusercontent.com/56170852/233218942-ac47a923-21f7-4b3a-af02-7a7961360abc.png) +## Workflow + +In CSSFinder, computations are described in special `cssfproject.*` files +within dedicated directories. Such directory with all files within it is called +a `project`. Project must contain either `cssfproject.json` or `cssfproject.py` +files which describe what should be done. `Json` file is purely declarative, +but with `$ref` support, while python scripts (`cssfproject.py`) allow for +dynamic creation of tasks. Tasks are smallest possible unit of work which can +be scheduled for execution by CSSFinder. They can be automatically executed in +parallel with automatic queues to speed up calculations. + +### Project with static (json) project + +During this tutorial it is preferable to create an empty directory and do +everything from now on within this directory. Let's call this directory +`tutorial1` and we will create it in home directory (`~`). + +``` +~/tutorial1/ +``` + +Start by creating new directory, `project1`, in there. This directory will +contain all project files needed for calculations. + +Fastest way to start with CSSFinder is to use static `json` files, therefore +this is what we are going to use now. + +Create `cssfproject.json` file in `~/tutorial1/project1` directory. + +We will use our example `state.mtx` file, but you can use Your own real data. + +Create `state.mtx` file within `~/tutorial1/project1` directory and fill it +with following data: + +``` +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 +``` + ## Development This project uses `Python` programming language and requires at least python From ff69062008bd4505b7657f10c90c0190560c05e8 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 19 May 2023 11:18:28 +0200 Subject: [PATCH 187/227] Flatten command line interface --- cssfinder/cli.py | 178 +++++++++++++++++++++++++++-------------------- 1 file changed, 103 insertions(+), 75 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 2986874..25d8b46 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -91,29 +91,83 @@ def main(ctx: click.Context, verbose: int, *, debug: bool, perf_log: bool) -> No ) -def _is_path_needed_for_subcommand( - ctx: click.Context, param: click.Option, value: Optional[str] # noqa: ARG001 -) -> str | None: - if ctx.invoked_subcommand in ["task"] and not value: - msg = "The path parameter is required for this subcommand." - raise click.BadParameter(msg) - return value +@main.command(name="show-command-tree") +@click.pass_context +def tree(ctx: click.Context) -> None: + """Show the command tree of your CLI.""" + root_cmd = _build_command_tree(ctx.find_root().command) + _print_tree(root_cmd) + + +class _CommandWrapper: + """Command tree printing based on `https://github.com/whwright/click-command- + tree`. + """ + + def __init__( + self, + command: Optional[click.Command] = None, + _children: Optional[list[click.Command]] = None, + ) -> None: + self.command = command + self.children: list[_CommandWrapper] = [] + + @property + def name(self) -> str: + return self.command.name + + def __repr__(self) -> str: + return f"{{_CommandWrapper {self.name}}}" + + +def _build_command_tree(click_command: click.Command) -> _CommandWrapper: + wrapper = _CommandWrapper(click_command) + + if isinstance(click_command, click.core.Group): + for _, cmd in click_command.commands.items(): + if not getattr(cmd, "hidden", False): + wrapper.children.append(_build_command_tree(cmd)) + + return wrapper + + +def _print_tree( + command: _CommandWrapper, + depth: int = 0, + *, + is_last_item: bool = False, + is_last_parent: bool = False, +) -> None: + if depth == 0: + prefix = "" + tree_item = "" + else: + prefix = " " if is_last_parent else "│ " + tree_item = "└── " if is_last_item else "├── " + + doc = command.command.__doc__ + first_line = " - " + doc.split("\n")[0] if doc else "" + + line = f"{prefix * (depth - 1) + tree_item + command.name:<30}{first_line}" + + click.echo(line) + + for i, child in enumerate(sorted(command.children, key=lambda x: x.name)): + _print_tree( + child, + depth=(depth + 1), + is_last_item=(i == (len(command.children) - 1)), + is_last_parent=is_last_item, + ) @main.group("project") -@click.pass_context -@click.option( - "--path", - "-p", - type=click.Path(exists=True, file_okay=True, dir_okay=True), - callback=_is_path_needed_for_subcommand, -) -def _project(ctx: click.Context, path: str) -> None: +def _project(ctx: click.Context) -> None: """Group of commands for interaction with projects.""" - ctx.obj.project_path = path + ctx.obj.project_path = Path.cwd().as_posix() -@_project.command("new") +@main.command("create-new-project") @click.option("--author", default=None, help="Author metadata field value.") @click.option("--email", default=None, help="Email metadata field value.") @click.option("--name", default=None, help="Name metadata field value.") @@ -132,17 +186,7 @@ def _project_new( create_new_project(author, email, name, description, project_version) -@_project.group("task") -def _task() -> None: - """Group of commands to operate on tasks.""" - - -@_task.group("add") -def _add() -> None: - """Command for adding new tasks.""" - - -@_add.command("gilbert") +@_project.command("add-gilbert-task") @click.pass_obj @click.option("--name", default=None, help="Name for the task.") @click.option("--mode", default=None, help="Algorithm mode.") @@ -200,7 +244,7 @@ def _add() -> None: default=None, help="Path to file containing projection matrix.", ) -def _gilbert( # noqa: PLR0913 +def _add_gilbert_task( # noqa: PLR0913 ctx: Ctx, name: Optional[str], mode: Optional[str], @@ -252,7 +296,7 @@ def _gilbert( # noqa: PLR0913 ) -@_task.command("run") +@_project.command("run-tasks") @click.option( "--match", "-m", @@ -276,7 +320,7 @@ def _gilbert( # noqa: PLR0913 "changes execution scheme, thus code won't be executed in main thread.", ) @click.pass_obj -def _run( +def _run_tasks( ctx: Ctx, match_: list[str] | None, *, force_sequential: bool, max_parallel: int ) -> None: """Run tasks from the project.""" @@ -327,7 +371,7 @@ def _run( raise SystemExit(0) -@_task.command("report") +@_project.command("create-single-report") @click.argument( "task", ) @@ -354,7 +398,9 @@ def _run( help="Automatically open report in web browser.", ) @click.pass_obj -def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> None: +def _create_single_report( + ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool +) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. @@ -396,26 +442,16 @@ def _log_exit(code: int) -> None: raise SystemExit(code) -@main.group("backend") -def _backend() -> None: - """Group of commands for inspecting available backends.""" - - -@_backend.command("list") -def _backend_list() -> None: +@main.command("list-backends") +def _list_backends() -> None: """List available backends.""" from cssfinder.algorithm.backend.loader import Loader rich.get_console().print(Loader.new().get_rich_table()) -@main.group("examples") -def _examples() -> None: - """Group of commands for accessing bundled examples.""" - - -@_examples.command("list") -def _examples_list() -> None: +@main.command("list-examples") +def _list_examples() -> None: """Show list of all available example projects.""" from cssfinder import examples @@ -443,19 +479,9 @@ def _( return _ -@_examples.command("clone") -@click.option( - "--sha", - default=None, - help="SHA of example. Mutually exclusive with `--name`.", - expose_value=True, -) -@click.option( - "--name", - default=None, - help="Name of example. Mutually exclusive with `--sha`.", - expose_value=True, - callback=validate_mutually_exclusive("name", "sha"), +@main.command("clone-example") +@click.argument( + "sha_or_name", ) @click.option( "-o", @@ -485,22 +511,26 @@ def _( help="When set, automatically open new explorer window in example directory.", ) def _examples_clone( - sha: Optional[str], - name: Optional[str], + sha_or_name: str, out: Optional[str], *, force_overwrite: bool, do_open_terminal: bool, do_open_explorer: bool, ) -> None: - """Clone one of examples to specific location.""" + """Clone one of examples to specific location. + + SHA_OR_NAME - or name of example. to select by sha, use 'sha:000000', otherwise this + parameter will be considered a example name. + + """ from cssfinder.crossplatform import open_file_explorer, open_terminal from cssfinder.cssfproject import ProjectFileNotFoundError from cssfinder.enums import ExitCode destination = Path.cwd() if out is None else Path(out).expanduser().resolve() - example = _select_example(sha, name) + example = _select_example(sha_or_name) try: project = example.get_project() except ProjectFileNotFoundError as exc: @@ -520,6 +550,7 @@ def _examples_clone( ) try: example.clone(destination) + rich.print(f"Cloned example to {destination.as_posix()!r}") except FileNotFoundError as exc: logging.critical(str(exc)) @@ -560,26 +591,23 @@ def _get_validated_destination( return destination_project_folder -def _select_example(sha: Optional[str], name: Optional[str]) -> examples.Example: +def _select_example(sha_or_name: str) -> examples.Example: from cssfinder import examples from cssfinder.enums import ExitCode - if name is not None: + if sha_or_name.startswith("sha:"): + sha_or_name = sha_or_name[4:] try: - example = examples.Example.select_by_name(name) + example = examples.Example.select_by_sha256(sha_or_name) except examples.ExampleNotFoundError as exc: logging.critical("%s", exc) - raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc + raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc - elif sha is not None: + else: try: - example = examples.Example.select_by_sha256(sha) + example = examples.Example.select_by_name(sha_or_name) except examples.ExampleNotFoundError as exc: logging.critical("%s", exc) - raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc - - else: - logging.critical("Neither `--name` not `--sha` given, no example was selected.") - raise SystemExit(ExitCode.EXAMPLE_SHA_NOR_NAME_GIVEN) + raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc return example From 9798bd1fab8addd1f07cc1d4b0cb4d139815deb1 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 19 May 2023 11:36:55 +0200 Subject: [PATCH 188/227] Add more information fields to reports --- cssfinder/reports/math.py | 4 +++- cssfinder/reports/plotting.py | 4 ++-- cssfinder/reports/renderer.py | 4 ++++ 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/cssfinder/reports/math.py b/cssfinder/reports/math.py index 974db3d..23106f2 100644 --- a/cssfinder/reports/math.py +++ b/cssfinder/reports/math.py @@ -64,6 +64,7 @@ class SlopeProperties: """ + correction_count: int optimum: np.float64 r_value: np.float64 aa1: np.float64 @@ -108,6 +109,7 @@ def find(cls, data: npt.NDArray[np.float64]) -> Self: correction_index: npt.NDArray[np.float64] = data[:, 1] correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] + correction_count = len(data) optimum = find_correction_optimum(data[:, 2]) r_value = R(correction_value, optimum) @@ -115,7 +117,7 @@ def find(cls, data: npt.NDArray[np.float64]) -> Self: aa1 = trend(iteration_index, correction_index) bb1 = np.exp(offset(iteration_index, correction_index)) - return cls(optimum, r_value, aa1, bb1) + return cls(correction_count, optimum, r_value, aa1, bb1) def save_to(self, dest: Path) -> None: """Save properties to file.""" diff --git a/cssfinder/reports/plotting.py b/cssfinder/reports/plotting.py index d64b5ef..714fc89 100644 --- a/cssfinder/reports/plotting.py +++ b/cssfinder/reports/plotting.py @@ -143,9 +143,9 @@ def plot_corrections_inverse(self, axes: Optional[plt.Axes] = None) -> Plot: axes.grid(visible=True) axes.set_xlabel("Correction index") - axes.set_ylabel("Correction offsetted inverse value") + axes.set_ylabel("Inverse correction value with offset") - axes.set_title("Distance offsetted inverse decay") + axes.set_title("Inverse distance decay with offset") return Plot(axes) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index 2ed4340..93bb7e0 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -100,8 +100,12 @@ def math_props(self) -> OrderedDict: """Return mathematical properties.""" return OrderedDict( { + "Correction count": f"{self.props.correction_count}", "Hilbert-Schmidt distance": f"{self.props.optimum:.3f}", "Sample correlation coefficient": f"{self.props.r_value:.3f}", + "Offset (optimum)": f"{self.props.optimum:.3f}", + "Trend (aa1)": f"{self.props.aa1:.3f}", + "Exp Offset (bb1)": f"{self.props.bb1:.3f}", } ) From 0f5f60a8ab54462cc597d11897186be8d2282a9b Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 19 May 2023 11:39:51 +0200 Subject: [PATCH 189/227] Add command for inspecting projects --- cssfinder/cli.py | 33 +++++++++++++++++++++++++-------- 1 file changed, 25 insertions(+), 8 deletions(-) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 25d8b46..d7ee8e7 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -114,6 +114,8 @@ def __init__( @property def name(self) -> str: + assert self.command is not None + assert self.command.name is not None return self.command.name def __repr__(self) -> str: @@ -161,12 +163,6 @@ def _print_tree( ) -@main.group("project") -def _project(ctx: click.Context) -> None: - """Group of commands for interaction with projects.""" - ctx.obj.project_path = Path.cwd().as_posix() - - @main.command("create-new-project") @click.option("--author", default=None, help="Author metadata field value.") @click.option("--email", default=None, help="Email metadata field value.") @@ -186,6 +182,27 @@ def _project_new( create_new_project(author, email, name, description, project_version) +@main.group("project") +@click.pass_context +def _project(ctx: click.Context) -> None: + """Group of commands for interaction with projects.""" + ctx.obj.project_path = Path.cwd().as_posix() + + +@_project.command("inspect") +@click.pass_obj +def _inspect(ctx: Ctx) -> None: + """Load and display project.""" + from cssfinder.cssfproject import CSSFProject + + if ctx.project_path is None: + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) + + project = CSSFProject.load_project(ctx.project_path) + rich.print_json(project.json(indent=4)) + + @_project.command("add-gilbert-task") @click.pass_obj @click.option("--name", default=None, help="Name for the task.") @@ -371,7 +388,7 @@ def _run_tasks( raise SystemExit(0) -@_project.command("create-single-report") +@_project.command("create-task-report") @click.argument( "task", ) @@ -398,7 +415,7 @@ def _run_tasks( help="Automatically open report in web browser.", ) @click.pass_obj -def _create_single_report( +def _create_task_report( ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool ) -> None: """Create short report for task. From b04ba3f274a750b976be5fb38ef448466e452895 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Fri, 19 May 2023 12:20:44 +0200 Subject: [PATCH 190/227] Add support for JSON reports and batch summary creation --- cssfinder/api.py | 21 +++++------- cssfinder/cli.py | 63 +++++++++++++++++++++++++++++++++-- cssfinder/reports/__init__.py | 2 ++ cssfinder/reports/json.py | 46 +++++++++++++++++++++++++ cssfinder/reports/renderer.py | 1 + 5 files changed, 119 insertions(+), 14 deletions(-) create mode 100644 cssfinder/reports/json.py diff --git a/cssfinder/api.py b/cssfinder/api.py index 1c28bcd..ebfa8f7 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -300,20 +300,17 @@ def create_report( """Create report for task selected by pattern from project object.""" tasks = project.select_tasks([task]) - if len(tasks) > 1: - matched_tasks_names = [t.task_name for t in tasks] - message = ( - f"Pattern {task!r} matches more than one task ({len(tasks)}): " - f"{matched_tasks_names!r}" - ) - raise AmbiguousTaskKeyError(message) + for task_object in tasks: + logging.info("Creating summary for task %s", task_object.task_name) - task_object, *_ = tasks + manager = ReportManager(project, task_object) + prepared_manager = manager.prepare() - manager = ReportManager(project, task_object) - prepared_manager = manager.prepare() - for report_type in reports: - yield prepared_manager.request_report(report_type) + for report_type in reports: + logging.info( + "Report for task %s of type %s", task_object.task_name, report_type.name + ) + yield prepared_manager.request_report(report_type) class AmbiguousTaskKeyError(KeyError): diff --git a/cssfinder/cli.py b/cssfinder/cli.py index d7ee8e7..6409b9f 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -36,7 +36,9 @@ import rich import cssfinder +from cssfinder.api import create_report_from from cssfinder.log import enable_performance_logging +from cssfinder.reports.renderer import ReportType if TYPE_CHECKING: from cssfinder import examples @@ -203,6 +205,33 @@ def _inspect(ctx: Ctx) -> None: rich.print_json(project.json(indent=4)) +@_project.command("inspect-output") +@click.argument("task_pattern") +@click.pass_obj +def _inspect_output(ctx: Ctx, task_pattern: str) -> None: + """Load and display project.""" + import json + + from cssfinder.cssfproject import CSSFProject + + if ctx.project_path is None: + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) + + project = CSSFProject.load_project(ctx.project_path) + tasks = project.select_tasks([task_pattern]) + for i, task in enumerate(tasks): + corrections = json.loads( + task.output_corrections_file.read_text(encoding="utf-8") + ) + print("First correction: ", corrections[0]) + print("Middle correction:", corrections[len(corrections) // 2 - 1]) + print("Last correction: ", corrections[-1]) + + if i < (len(tasks) - 1): + print("-" * 70) + + @_project.command("add-gilbert-task") @click.pass_obj @click.option("--name", default=None, help="Name for the task.") @@ -406,6 +435,13 @@ def _run_tasks( default=False, help="Include PDF report.", ) +@click.option( + "--json", + "--no-json", + is_flag=True, + default=False, + help="Include JSON report.", +) @click.option( "--open", "--no-open", @@ -416,7 +452,7 @@ def _run_tasks( ) @click.pass_obj def _create_task_report( - ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool + ctx: Ctx, task: str, *, html: bool, pdf: bool, json: bool, open_: bool ) -> None: """Create short report for task. @@ -436,6 +472,9 @@ def _create_task_report( if pdf: include_report_types.append(ReportType.PDF) + if json: + include_report_types.append(ReportType.JSON) + if len(include_report_types) == 0: logging.critical( "No report type was selected therefore nothing will be calculated, exiting." @@ -455,10 +494,30 @@ def _create_task_report( def _log_exit(code: int) -> None: - logging.exception("Exit with code code.") + logging.exception("Exit with code %d.", code) raise SystemExit(code) +@_project.command("create-json-summary") +@click.argument("task_pattern") +@click.pass_obj +def _create_json_summary(ctx: Ctx, task_pattern: str) -> None: + """Load and display project.""" + import json + + assert ctx.project_path is not None + output = [] + + for report in create_report_from( + ctx.project_path, task=task_pattern, reports=[ReportType.JSON] + ): + content = json.loads(report.content) + output.append(content) + + dest = Path(ctx.project_path) / "output" / "summary.json" + dest.write_text(json.dumps(output, indent=4)) + + @main.command("list-backends") def _list_backends() -> None: """List available backends.""" diff --git a/cssfinder/reports/__init__.py b/cssfinder/reports/__init__.py index de1effc..c54ec15 100644 --- a/cssfinder/reports/__init__.py +++ b/cssfinder/reports/__init__.py @@ -24,9 +24,11 @@ from __future__ import annotations from cssfinder.reports.html import HTMLRenderer +from cssfinder.reports.json import JSONRenderer from cssfinder.reports.manager import PreparedReportManager from cssfinder.reports.pdf import PDFRenderer from cssfinder.reports.renderer import ReportType PreparedReportManager.register_renderer(HTMLRenderer, ReportType.HTML) PreparedReportManager.register_renderer(PDFRenderer, ReportType.PDF) +PreparedReportManager.register_renderer(JSONRenderer, ReportType.JSON) diff --git a/cssfinder/reports/json.py b/cssfinder/reports/json.py new file mode 100644 index 0000000..28eb8dc --- /dev/null +++ b/cssfinder/reports/json.py @@ -0,0 +1,46 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""HTML document based report renderer.""" + +from __future__ import annotations + +import json + +from cssfinder.reports.renderer import Renderer, Report, ReportType + + +class JSONRenderer(Renderer): + """Renderer implementation outputting HTML files content.""" + + def render(self) -> Report: + """Generate report content.""" + return Report( + json.dumps( + { + "title": self.ctx.title, + "meta": self.ctx.meta, + "math": self.ctx.math_props, + }, + indent=4, + ).encode("utf-8"), + ReportType.JSON, + self.ctx.task.task_output_directory / "report.json", + ) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index 93bb7e0..a1a95fe 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -44,6 +44,7 @@ class ReportType(Enum): PDF = "pdf" ARCHIVE = "zip" TXT = "txt" + JSON = "json" def get_file_name(self) -> str: """Return default file name for specific type of report.""" From 77bc81369c863c4b29517cd90dd2a31f77ae125d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Fri, 19 May 2023 15:25:24 +0200 Subject: [PATCH 191/227] Release 0.7.0 (#57) --- CHANGELOG.md | 9 + README.md | 118 ++++++++- cssfinder/__init__.py | 2 +- cssfinder/algorithm/mode_util.py | 58 +++- cssfinder/api.py | 37 ++- cssfinder/cli.py | 248 +++++++++++++----- cssfinder/examples/GHZ3_json/cssfproject.json | 24 ++ cssfinder/reports/__init__.py | 2 + cssfinder/reports/json.py | 46 ++++ cssfinder/reports/math.py | 4 +- cssfinder/reports/plotting.py | 4 +- cssfinder/reports/renderer.py | 5 + poetry.lock | 36 +-- pyproject.toml | 8 +- test/test_system/base.py | 4 +- test/test_system/test_g3pae3qd.py | 42 +++ 16 files changed, 512 insertions(+), 135 deletions(-) create mode 100644 cssfinder/reports/json.py create mode 100644 test/test_system/test_g3pae3qd.py diff --git a/CHANGELOG.md b/CHANGELOG.md index f607e5e..6711e2a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,15 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.7.0 - May 19, 2023 + +- Added G3PaE3qD mode support. +- Changed CLI structure to be flatter. +- Added command allowing for inspecting projects and outputs. +- Added command for batch calculation of summaries for task outputs. +- Bumped version of cssfinder-backend-rust to 0.1.1 +- Bumped version of cssfinder-backend-numpy to 0.5.0 + ### 0.6.0 - April 27, 2023 - Added 32x32 matrix FSnQd example `benchmark_32x32`. diff --git a/README.md b/README.md index 054cc3f..e7ba97c 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,28 @@ -# CSSFinder +# CSSFinder - Closest Separable State Finder -Closest separable state finder. +CSSFinder is a software designed to find the closest separable state (CSS) for +a given quantum state. This helps in quantifying entanglement and classifying +quantum states as entangled or separable. + +This software has been designed in a modular way. This is manifested by the +separation of the main part, which contains the user interface and modularity +support elements, from the algorithm implementation. The main part was written +in Python and uses the mechanisms of Python modules. Since it is possible to +craft shared libraries in such a way that Python imports them as native modules +any compiled language can be used to create highly optimized implementations of +desired algorithms. Such implementations are called backends and they use +minimalistic interface to interact with main part of the program. + +In parallel with the development of this main part, two implementations of the +algorithm were created: + +- `cssfinder_backend_numpy` - based on Python NumPy library implementing highly + optimized multidimensional arrays and linear algebra. +- `cssfinder_backend_rust` - based on Rust ndarray crate which is an equivalent + of NumPy from Rust language world. + +Development of those two implementations allowed us to better understand limits +of what can and what can not become faster. ## Installing @@ -10,9 +32,9 @@ To install CSSFinder from PyPI, use `pip` in terminal: pip install cssfinder ``` -Because CSSFinder is a modular tool, you will have to also install a `backend` -package, which contains concrete implementation of algorithms. Simples way is -to just install `numpy` or `rust` extras set: +You will have to also install a `backend` package, which contains concrete +implementation of algorithms. Simples way is to just install `numpy` or `rust` +extras set: ``` pip install cssfinder[numpy] @@ -97,6 +119,82 @@ folder (`5qubits_json/`). ![image](https://user-images.githubusercontent.com/56170852/233218942-ac47a923-21f7-4b3a-af02-7a7961360abc.png) +## Workflow + +In CSSFinder, computations are described in special `cssfproject.*` files +within dedicated directories. Such directory with all files within it is called +a `project`. Project must contain either `cssfproject.json` or `cssfproject.py` +files which describe what should be done. `Json` file is purely declarative, +but with `$ref` support, while python scripts (`cssfproject.py`) allow for +dynamic creation of tasks. Tasks are smallest possible unit of work which can +be scheduled for execution by CSSFinder. They can be automatically executed in +parallel with automatic queues to speed up calculations. + +### Project with static (json) project + +During this tutorial it is preferable to create an empty directory and do +everything from now on within this directory. Let's call this directory +`tutorial1` and we will create it in home directory (`~`). + +``` +~/tutorial1/ +``` + +Start by creating new directory, `project1`, in there. This directory will +contain all project files needed for calculations. + +Fastest way to start with CSSFinder is to use static `json` files, therefore +this is what we are going to use now. + +Create `cssfproject.json` file in `~/tutorial1/project1` directory. + +We will use our example `state.mtx` file, but you can use Your own real data. + +Create `state.mtx` file within `~/tutorial1/project1` directory and fill it +with following data: + +``` +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 +``` + ## Development This project uses `Python` programming language and requires at least python @@ -155,27 +253,27 @@ poe build ![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) -This will create `dist/` directory with `cssfinder-0.6.0` or alike inside. +This will create `dist/` directory with `cssfinder-0.7.0` or alike inside. Wheel file can be installed with ``` -pip install ./dist/cssfinder-0.6.0 +pip install ./dist/cssfinder-0.7.0 ``` What you expect is ``` -Successfully installed cssfinder-0.6.0 +Successfully installed cssfinder-0.7.0 ``` or rather something like ``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.6.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.7.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 ``` -But `cssfinder-0.6.0` should be included in this list. +But `cssfinder-0.7.0` should be included in this list. ## Code quality diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index be7193a..df00772 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.6.0" +__version__ = "0.7.0" diff --git a/cssfinder/algorithm/mode_util.py b/cssfinder/algorithm/mode_util.py index 32da6f9..ccc07b7 100644 --- a/cssfinder/algorithm/mode_util.py +++ b/cssfinder/algorithm/mode_util.py @@ -90,6 +90,9 @@ def new(mode: AlgoMode) -> ModeUtil: if mode == AlgoMode.SBiPa: return SBiPaUtil() + if mode == AlgoMode.G3PaE3qD: + return G3PaE3qDUtil() + msg = f"Unsupported mode {mode.name}" raise NotImplementedError(msg) @@ -112,7 +115,15 @@ def get_dimensions(self, state: npt.NDArray[np.complex128]) -> Dimensions: When depth and quantity can't be determined. """ - return self.detect_depth_and_quantity(len(state)) + dim = self.detect_depth_and_quantity(len(state)) + + logging.debug( + "Deduced quantity %r and depth %r when given total size %r", + dim.depth, + dim.quantity, + len(state), + ) + return dim @abstractmethod def detect_depth_and_quantity(self, total: int) -> Dimensions: @@ -166,12 +177,6 @@ def detect_depth_and_quantity(self, total: int) -> Dimensions: quantity = int(math.log(total, depth)) if quantity == int(quantity): - logging.debug( - "Deduced quantity %r and depth %r when given total size %r", - depth, - quantity, - total, - ) return Dimensions(depth, quantity) reason = "prime number range exceeded" @@ -213,12 +218,6 @@ def detect_depth_and_quantity(self, total: int) -> Dimensions: for depth in PRIMES: if total % depth == 0: quantity = int(total / depth) - logging.debug( - "Deduced quantity %r and depth %r when given total size %r", - depth, - quantity, - total, - ) return Dimensions(depth, quantity) reason = "prime number range exceeded" @@ -230,3 +229,36 @@ class UndefinedSystemSizeError(ValueError): def __init__(self, reason: str) -> None: super().__init__(f"Couldn't determine size of system: {reason}.") + + +class G3PaE3qDUtil(ModeUtil): + """G3PaE3q specific implementation of utilities eg. + + shape deduction. + + """ + + def detect_depth_and_quantity(self, total: int) -> Dimensions: + """Detect both system depth and system quantity. + + Parameters + ---------- + total : int + Dimension along one of axes. Matrix is expected to be square. + + Returns + ------- + Dimensions + System dimensions within dedicated container. + + Raises + ------ + ValueError + When depth and quantity can't be determined. + + """ + if round(total ** (1.0 / 3), 3) == round(total ** (1.0 / 3), 0): + return Dimensions(depth=int(total ** (1.0 / 3)), quantity=3) + + reason = "prime number range exceeded" + raise UndefinedSystemSizeError(reason) diff --git a/cssfinder/api.py b/cssfinder/api.py index 91f0476..ebfa8f7 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -24,6 +24,7 @@ import logging import os +import traceback from concurrent.futures import ProcessPoolExecutor from dataclasses import dataclass from itertools import repeat @@ -116,7 +117,20 @@ class TaskOptions: def run_task(task: Task, options: TaskOptions) -> None: """Run task until completed.""" try: - set_priority(os.getpid(), Priority.REALTIME, IoPriority.HIGH) + return _run_task(task, options) + except Exception as e: + logging.critical( + "Task %r failed due to exception:\n%s", + task.task_name, + str.join("", traceback.format_exception(type(e), e, e.__traceback__)), + ) + raise + + +def _run_task(task: Task, options: TaskOptions) -> None: + """Run task until completed.""" + try: + set_priority(os.getpid(), Priority.ABOVE_NORMAL, IoPriority.HIGH) except (OSError, psutil.AccessDenied): logging.warning( "Failed to elevate process priority. It can negatively affect program " @@ -286,20 +300,17 @@ def create_report( """Create report for task selected by pattern from project object.""" tasks = project.select_tasks([task]) - if len(tasks) > 1: - matched_tasks_names = [t.task_name for t in tasks] - message = ( - f"Pattern {task!r} matches more than one task ({len(tasks)}): " - f"{matched_tasks_names!r}" - ) - raise AmbiguousTaskKeyError(message) + for task_object in tasks: + logging.info("Creating summary for task %s", task_object.task_name) - task_object, *_ = tasks + manager = ReportManager(project, task_object) + prepared_manager = manager.prepare() - manager = ReportManager(project, task_object) - prepared_manager = manager.prepare() - for report_type in reports: - yield prepared_manager.request_report(report_type) + for report_type in reports: + logging.info( + "Report for task %s of type %s", task_object.task_name, report_type.name + ) + yield prepared_manager.request_report(report_type) class AmbiguousTaskKeyError(KeyError): diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 2986874..6409b9f 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -36,7 +36,9 @@ import rich import cssfinder +from cssfinder.api import create_report_from from cssfinder.log import enable_performance_logging +from cssfinder.reports.renderer import ReportType if TYPE_CHECKING: from cssfinder import examples @@ -91,29 +93,79 @@ def main(ctx: click.Context, verbose: int, *, debug: bool, perf_log: bool) -> No ) -def _is_path_needed_for_subcommand( - ctx: click.Context, param: click.Option, value: Optional[str] # noqa: ARG001 -) -> str | None: - if ctx.invoked_subcommand in ["task"] and not value: - msg = "The path parameter is required for this subcommand." - raise click.BadParameter(msg) - return value +@main.command(name="show-command-tree") +@click.pass_context +def tree(ctx: click.Context) -> None: + """Show the command tree of your CLI.""" + root_cmd = _build_command_tree(ctx.find_root().command) + _print_tree(root_cmd) -@main.group("project") -@click.pass_context -@click.option( - "--path", - "-p", - type=click.Path(exists=True, file_okay=True, dir_okay=True), - callback=_is_path_needed_for_subcommand, -) -def _project(ctx: click.Context, path: str) -> None: - """Group of commands for interaction with projects.""" - ctx.obj.project_path = path +class _CommandWrapper: + """Command tree printing based on `https://github.com/whwright/click-command- + tree`. + """ + + def __init__( + self, + command: Optional[click.Command] = None, + _children: Optional[list[click.Command]] = None, + ) -> None: + self.command = command + self.children: list[_CommandWrapper] = [] + + @property + def name(self) -> str: + assert self.command is not None + assert self.command.name is not None + return self.command.name + + def __repr__(self) -> str: + return f"{{_CommandWrapper {self.name}}}" + + +def _build_command_tree(click_command: click.Command) -> _CommandWrapper: + wrapper = _CommandWrapper(click_command) + + if isinstance(click_command, click.core.Group): + for _, cmd in click_command.commands.items(): + if not getattr(cmd, "hidden", False): + wrapper.children.append(_build_command_tree(cmd)) + + return wrapper + + +def _print_tree( + command: _CommandWrapper, + depth: int = 0, + *, + is_last_item: bool = False, + is_last_parent: bool = False, +) -> None: + if depth == 0: + prefix = "" + tree_item = "" + else: + prefix = " " if is_last_parent else "│ " + tree_item = "└── " if is_last_item else "├── " + doc = command.command.__doc__ + first_line = " - " + doc.split("\n")[0] if doc else "" -@_project.command("new") + line = f"{prefix * (depth - 1) + tree_item + command.name:<30}{first_line}" + + click.echo(line) + + for i, child in enumerate(sorted(command.children, key=lambda x: x.name)): + _print_tree( + child, + depth=(depth + 1), + is_last_item=(i == (len(command.children) - 1)), + is_last_parent=is_last_item, + ) + + +@main.command("create-new-project") @click.option("--author", default=None, help="Author metadata field value.") @click.option("--email", default=None, help="Email metadata field value.") @click.option("--name", default=None, help="Name metadata field value.") @@ -132,17 +184,55 @@ def _project_new( create_new_project(author, email, name, description, project_version) -@_project.group("task") -def _task() -> None: - """Group of commands to operate on tasks.""" +@main.group("project") +@click.pass_context +def _project(ctx: click.Context) -> None: + """Group of commands for interaction with projects.""" + ctx.obj.project_path = Path.cwd().as_posix() + + +@_project.command("inspect") +@click.pass_obj +def _inspect(ctx: Ctx) -> None: + """Load and display project.""" + from cssfinder.cssfproject import CSSFProject + if ctx.project_path is None: + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) -@_task.group("add") -def _add() -> None: - """Command for adding new tasks.""" + project = CSSFProject.load_project(ctx.project_path) + rich.print_json(project.json(indent=4)) -@_add.command("gilbert") +@_project.command("inspect-output") +@click.argument("task_pattern") +@click.pass_obj +def _inspect_output(ctx: Ctx, task_pattern: str) -> None: + """Load and display project.""" + import json + + from cssfinder.cssfproject import CSSFProject + + if ctx.project_path is None: + reason = "ctx.project_path shall not be None." + raise RuntimeError(reason) + + project = CSSFProject.load_project(ctx.project_path) + tasks = project.select_tasks([task_pattern]) + for i, task in enumerate(tasks): + corrections = json.loads( + task.output_corrections_file.read_text(encoding="utf-8") + ) + print("First correction: ", corrections[0]) + print("Middle correction:", corrections[len(corrections) // 2 - 1]) + print("Last correction: ", corrections[-1]) + + if i < (len(tasks) - 1): + print("-" * 70) + + +@_project.command("add-gilbert-task") @click.pass_obj @click.option("--name", default=None, help="Name for the task.") @click.option("--mode", default=None, help="Algorithm mode.") @@ -200,7 +290,7 @@ def _add() -> None: default=None, help="Path to file containing projection matrix.", ) -def _gilbert( # noqa: PLR0913 +def _add_gilbert_task( # noqa: PLR0913 ctx: Ctx, name: Optional[str], mode: Optional[str], @@ -252,7 +342,7 @@ def _gilbert( # noqa: PLR0913 ) -@_task.command("run") +@_project.command("run-tasks") @click.option( "--match", "-m", @@ -276,7 +366,7 @@ def _gilbert( # noqa: PLR0913 "changes execution scheme, thus code won't be executed in main thread.", ) @click.pass_obj -def _run( +def _run_tasks( ctx: Ctx, match_: list[str] | None, *, force_sequential: bool, max_parallel: int ) -> None: """Run tasks from the project.""" @@ -327,7 +417,7 @@ def _run( raise SystemExit(0) -@_task.command("report") +@_project.command("create-task-report") @click.argument( "task", ) @@ -345,6 +435,13 @@ def _run( default=False, help="Include PDF report.", ) +@click.option( + "--json", + "--no-json", + is_flag=True, + default=False, + help="Include JSON report.", +) @click.option( "--open", "--no-open", @@ -354,7 +451,9 @@ def _run( help="Automatically open report in web browser.", ) @click.pass_obj -def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> None: +def _create_task_report( + ctx: Ctx, task: str, *, html: bool, pdf: bool, json: bool, open_: bool +) -> None: """Create short report for task. TASK - name pattern matching exactly one task, for which report should be created. @@ -373,6 +472,9 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> if pdf: include_report_types.append(ReportType.PDF) + if json: + include_report_types.append(ReportType.JSON) + if len(include_report_types) == 0: logging.critical( "No report type was selected therefore nothing will be calculated, exiting." @@ -392,30 +494,40 @@ def _task_report(ctx: Ctx, task: str, *, html: bool, pdf: bool, open_: bool) -> def _log_exit(code: int) -> None: - logging.exception("Exit with code code.") + logging.exception("Exit with code %d.", code) raise SystemExit(code) -@main.group("backend") -def _backend() -> None: - """Group of commands for inspecting available backends.""" +@_project.command("create-json-summary") +@click.argument("task_pattern") +@click.pass_obj +def _create_json_summary(ctx: Ctx, task_pattern: str) -> None: + """Load and display project.""" + import json + + assert ctx.project_path is not None + output = [] + + for report in create_report_from( + ctx.project_path, task=task_pattern, reports=[ReportType.JSON] + ): + content = json.loads(report.content) + output.append(content) + + dest = Path(ctx.project_path) / "output" / "summary.json" + dest.write_text(json.dumps(output, indent=4)) -@_backend.command("list") -def _backend_list() -> None: +@main.command("list-backends") +def _list_backends() -> None: """List available backends.""" from cssfinder.algorithm.backend.loader import Loader rich.get_console().print(Loader.new().get_rich_table()) -@main.group("examples") -def _examples() -> None: - """Group of commands for accessing bundled examples.""" - - -@_examples.command("list") -def _examples_list() -> None: +@main.command("list-examples") +def _list_examples() -> None: """Show list of all available example projects.""" from cssfinder import examples @@ -443,19 +555,9 @@ def _( return _ -@_examples.command("clone") -@click.option( - "--sha", - default=None, - help="SHA of example. Mutually exclusive with `--name`.", - expose_value=True, -) -@click.option( - "--name", - default=None, - help="Name of example. Mutually exclusive with `--sha`.", - expose_value=True, - callback=validate_mutually_exclusive("name", "sha"), +@main.command("clone-example") +@click.argument( + "sha_or_name", ) @click.option( "-o", @@ -485,22 +587,26 @@ def _( help="When set, automatically open new explorer window in example directory.", ) def _examples_clone( - sha: Optional[str], - name: Optional[str], + sha_or_name: str, out: Optional[str], *, force_overwrite: bool, do_open_terminal: bool, do_open_explorer: bool, ) -> None: - """Clone one of examples to specific location.""" + """Clone one of examples to specific location. + + SHA_OR_NAME - or name of example. to select by sha, use 'sha:000000', otherwise this + parameter will be considered a example name. + + """ from cssfinder.crossplatform import open_file_explorer, open_terminal from cssfinder.cssfproject import ProjectFileNotFoundError from cssfinder.enums import ExitCode destination = Path.cwd() if out is None else Path(out).expanduser().resolve() - example = _select_example(sha, name) + example = _select_example(sha_or_name) try: project = example.get_project() except ProjectFileNotFoundError as exc: @@ -520,6 +626,7 @@ def _examples_clone( ) try: example.clone(destination) + rich.print(f"Cloned example to {destination.as_posix()!r}") except FileNotFoundError as exc: logging.critical(str(exc)) @@ -560,26 +667,23 @@ def _get_validated_destination( return destination_project_folder -def _select_example(sha: Optional[str], name: Optional[str]) -> examples.Example: +def _select_example(sha_or_name: str) -> examples.Example: from cssfinder import examples from cssfinder.enums import ExitCode - if name is not None: + if sha_or_name.startswith("sha:"): + sha_or_name = sha_or_name[4:] try: - example = examples.Example.select_by_name(name) + example = examples.Example.select_by_sha256(sha_or_name) except examples.ExampleNotFoundError as exc: logging.critical("%s", exc) - raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc + raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc - elif sha is not None: + else: try: - example = examples.Example.select_by_sha256(sha) + example = examples.Example.select_by_name(sha_or_name) except examples.ExampleNotFoundError as exc: logging.critical("%s", exc) - raise SystemExit(ExitCode.EXAMPLE_WITH_SHA_NOT_FOUND) from exc - - else: - logging.critical("Neither `--name` not `--sha` given, no example was selected.") - raise SystemExit(ExitCode.EXAMPLE_SHA_NOR_NAME_GIVEN) + raise SystemExit(ExitCode.EXAMPLE_WITH_NAME_NOT_FOUND) from exc return example diff --git a/cssfinder/examples/GHZ3_json/cssfproject.json b/cssfinder/examples/GHZ3_json/cssfproject.json index a6d620b..b00ece4 100644 --- a/cssfinder/examples/GHZ3_json/cssfproject.json +++ b/cssfinder/examples/GHZ3_json/cssfproject.json @@ -46,6 +46,30 @@ "projection": null } } + }, + "test_g3pae3qd": { + "gilbert": { + "mode": "G3PaE3qD", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.project_directory}/GHZ3_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } } } } diff --git a/cssfinder/reports/__init__.py b/cssfinder/reports/__init__.py index de1effc..c54ec15 100644 --- a/cssfinder/reports/__init__.py +++ b/cssfinder/reports/__init__.py @@ -24,9 +24,11 @@ from __future__ import annotations from cssfinder.reports.html import HTMLRenderer +from cssfinder.reports.json import JSONRenderer from cssfinder.reports.manager import PreparedReportManager from cssfinder.reports.pdf import PDFRenderer from cssfinder.reports.renderer import ReportType PreparedReportManager.register_renderer(HTMLRenderer, ReportType.HTML) PreparedReportManager.register_renderer(PDFRenderer, ReportType.PDF) +PreparedReportManager.register_renderer(JSONRenderer, ReportType.JSON) diff --git a/cssfinder/reports/json.py b/cssfinder/reports/json.py new file mode 100644 index 0000000..28eb8dc --- /dev/null +++ b/cssfinder/reports/json.py @@ -0,0 +1,46 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +"""HTML document based report renderer.""" + +from __future__ import annotations + +import json + +from cssfinder.reports.renderer import Renderer, Report, ReportType + + +class JSONRenderer(Renderer): + """Renderer implementation outputting HTML files content.""" + + def render(self) -> Report: + """Generate report content.""" + return Report( + json.dumps( + { + "title": self.ctx.title, + "meta": self.ctx.meta, + "math": self.ctx.math_props, + }, + indent=4, + ).encode("utf-8"), + ReportType.JSON, + self.ctx.task.task_output_directory / "report.json", + ) diff --git a/cssfinder/reports/math.py b/cssfinder/reports/math.py index 974db3d..23106f2 100644 --- a/cssfinder/reports/math.py +++ b/cssfinder/reports/math.py @@ -64,6 +64,7 @@ class SlopeProperties: """ + correction_count: int optimum: np.float64 r_value: np.float64 aa1: np.float64 @@ -108,6 +109,7 @@ def find(cls, data: npt.NDArray[np.float64]) -> Self: correction_index: npt.NDArray[np.float64] = data[:, 1] correction_value: npt.NDArray[np.float64] = data[int(2 * len(data) / 3) :, 2] + correction_count = len(data) optimum = find_correction_optimum(data[:, 2]) r_value = R(correction_value, optimum) @@ -115,7 +117,7 @@ def find(cls, data: npt.NDArray[np.float64]) -> Self: aa1 = trend(iteration_index, correction_index) bb1 = np.exp(offset(iteration_index, correction_index)) - return cls(optimum, r_value, aa1, bb1) + return cls(correction_count, optimum, r_value, aa1, bb1) def save_to(self, dest: Path) -> None: """Save properties to file.""" diff --git a/cssfinder/reports/plotting.py b/cssfinder/reports/plotting.py index d64b5ef..714fc89 100644 --- a/cssfinder/reports/plotting.py +++ b/cssfinder/reports/plotting.py @@ -143,9 +143,9 @@ def plot_corrections_inverse(self, axes: Optional[plt.Axes] = None) -> Plot: axes.grid(visible=True) axes.set_xlabel("Correction index") - axes.set_ylabel("Correction offsetted inverse value") + axes.set_ylabel("Inverse correction value with offset") - axes.set_title("Distance offsetted inverse decay") + axes.set_title("Inverse distance decay with offset") return Plot(axes) diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index 2ed4340..a1a95fe 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -44,6 +44,7 @@ class ReportType(Enum): PDF = "pdf" ARCHIVE = "zip" TXT = "txt" + JSON = "json" def get_file_name(self) -> str: """Return default file name for specific type of report.""" @@ -100,8 +101,12 @@ def math_props(self) -> OrderedDict: """Return mathematical properties.""" return OrderedDict( { + "Correction count": f"{self.props.correction_count}", "Hilbert-Schmidt distance": f"{self.props.optimum:.3f}", "Sample correlation coefficient": f"{self.props.r_value:.3f}", + "Offset (optimum)": f"{self.props.optimum:.3f}", + "Trend (aa1)": f"{self.props.aa1:.3f}", + "Exp Offset (bb1)": f"{self.props.bb1:.3f}", } ) diff --git a/poetry.lock b/poetry.lock index c3105e9..7c7a939 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. 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run_project_from(cls.get_project_directory(), [cls.TEST_TASK_NAME]) + run_project_from( + cls.get_project_directory(), [cls.TEST_TASK_NAME], force_sequential=True + ) gilbert_io = GilbertIO() diff --git a/test/test_system/test_g3pae3qd.py b/test/test_system/test_g3pae3qd.py new file mode 100644 index 0000000..f6fdb6e --- /dev/null +++ b/test/test_system/test_g3pae3qd.py @@ -0,0 +1,42 @@ +# Copyright 2023 Krzysztof Wiśniewski +# +# +# Permission is hereby granted, free of charge, to any person obtaining a copy of this +# software and associated documentation files (the “Software”), to deal in the Software +# without restriction, including without limitation the rights to use, copy, modify, +# merge, publish, distribute, sublicense, and/or sell copies of the Software, and to +# permit persons to whom the Software is furnished to do so, subject to the following +# conditions: +# +# The above copyright notice and this permission notice shall be included in all copies +# or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +# INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A +# PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT +# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF +# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE +# OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + + +"""Module groups system level test of G3PaE3qD mode of Gilbert algorithm.""" + +from __future__ import annotations + +from test.test_system.base import ModeTest + +from cssfinder.examples import Example + + +class Test_G3PaE3qD(ModeTest): # noqa: N801 # Underscore used for readability. + """Test behavior of G3PaE3qD mode of Gilbert algorithm.""" + + EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int = 100 + PROJECT_PATH = Example.GHZ3_json.get_path() + TEST_TASK_NAME: str = "test_g3pae3qd" + + OUT_STATE_ROW_COUNT: int = 8 + OUT_STATE_COL_COUNT: int = 8 + + MIN_CORRECTION_VALUE: float = 0.001 + MIN_MAX_FIRST_CORRECTION_RANGE: ModeTest.MinMax = ModeTest.MinMax(0.001, 0.120) From 0a470d34cc908f4eee40cab6bf8153f4ebe912c5 Mon Sep 17 00:00:00 2001 From: Krzysztof Wisniewski Date: Thu, 25 May 2023 02:36:58 +0200 Subject: [PATCH 192/227] Improve user interface --- cssfinder/api.py | 35 ++++++++++++++++---- cssfinder/cli.py | 83 ++++++++++++++++++++++++++++++++++++++++-------- cssfinder/log.py | 2 ++ poetry.lock | 14 +++++++- pyproject.toml | 1 + 5 files changed, 115 insertions(+), 20 deletions(-) diff --git a/cssfinder/api.py b/cssfinder/api.py index ebfa8f7..93f688b 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -31,6 +31,8 @@ from typing import TYPE_CHECKING, Iterable import psutil +import rich +from rich.panel import Panel from cssfinder.algorithm.gilbert import Gilbert from cssfinder.algorithm.mode_util import ModeUtil @@ -50,6 +52,7 @@ def run_project_from( tasks: list[str] | None = None, *, is_debug: bool = False, + is_rich: bool = True, force_sequential: bool = False, max_parallel: int = -1, ) -> None: @@ -65,6 +68,7 @@ def run_project_from( project, tasks, is_debug=is_debug, + is_rich=is_rich, force_sequential=force_sequential, max_parallel=max_parallel, ) @@ -75,6 +79,7 @@ def run_project( tasks: list[str] | None = None, *, is_debug: bool = False, + is_rich: bool = True, force_sequential: bool = False, max_parallel: int = -1, ) -> list[Task]: @@ -87,22 +92,26 @@ def run_project( task_list = project.select_tasks(tasks) if force_sequential: - for _ in map( + for out in map( run_task, task_list, repeat(TaskOptions(is_debug=is_debug)), ): - pass + if isinstance(out, BaseException): + raise out else: with ProcessPoolExecutor( max_parallel if max_parallel > 0 else None ) as executor: - executor.map( + out = executor.map( run_task, task_list, - repeat(TaskOptions(is_debug=is_debug)), + repeat(TaskOptions(is_debug=is_debug, is_rich=is_rich)), ) + for o in out: + if isinstance(o, BaseException): + raise o return task_list @@ -112,6 +121,7 @@ class TaskOptions: """Container for extra task options.""" is_debug: bool + is_rich: bool = True def run_task(task: Task, options: TaskOptions) -> None: @@ -142,7 +152,12 @@ def _run_task(task: Task, options: TaskOptions) -> None: ) if task.gilbert: - run_gilbert(task.gilbert, task.task_output_directory, is_debug=options.is_debug) + run_gilbert( + task.gilbert, + task.task_output_directory, + is_debug=options.is_debug, + is_rich=options.is_rich, + ) def run_gilbert( @@ -150,6 +165,7 @@ def run_gilbert( task_output_directory: Path, *, is_debug: bool = False, + is_rich: bool = True, ) -> None: """Run Gilbert algorithm part of task.""" asset_io = GilbertIO() @@ -159,7 +175,14 @@ def run_gilbert( algorithm = create_gilbert(config, asset_io, is_debug=is_debug) - logging.warning("Task %r started.", config.task_name) + logging.info("Task %r started.", config.task_name) + + if is_rich: + rich.print(Panel.fit(f"[blue]Task {config.task_name} started.")) + else: + print("-----------------------") + print(f"| Task {config.task_name} started |") + print("-----------------------") for epoch_index in algorithm.run( max_epochs=config.runtime.max_epochs, diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 6409b9f..a8f1992 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -26,19 +26,13 @@ import logging import shutil import traceback -import webbrowser from dataclasses import dataclass from pathlib import Path from typing import TYPE_CHECKING, Callable, Optional import click -import pendulum -import rich import cssfinder -from cssfinder.api import create_report_from -from cssfinder.log import enable_performance_logging -from cssfinder.reports.renderer import ReportType if TYPE_CHECKING: from cssfinder import examples @@ -51,11 +45,13 @@ class Ctx: """Command line context wrapper class.""" is_debug: bool = False + is_rich: bool = True project_path: str | None = None @click.group(invoke_without_command=True, no_args_is_help=True) @click.pass_context +@click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") @click.option( "-v", "--verbose", @@ -64,15 +60,62 @@ class Ctx: help="Control verbosity of logging, by default+ critical only, use " "-v, -vv, -vvv to gradually increase it.", ) -@click.version_option(cssfinder.__version__, "-V", "--version", prog_name="cssfinder") +@click.option( + "--numpy-thread-count", + type=int, + default=1, + required=False, + help="NumPy thread count override. Use '-1' to disable override and use defaults.", +) +@click.option( + "--seed", + type=int, + default=None, + required=False, + help="NumPy random generator seed override.", +) @click.option("--debug", is_flag=True, default=False) +@click.option("--rich", "--no-rich", "is_rich", is_flag=True, default=True) @click.option("--perf-log", is_flag=True, default=False) -def main(ctx: click.Context, verbose: int, *, debug: bool, perf_log: bool) -> None: +def main( + ctx: click.Context, + verbose: int, + seed: Optional[int], + numpy_thread_count: int, + *, + debug: bool, + is_rich: bool, + perf_log: bool, +) -> None: """CSSFinder is a script for finding closest separable states.""" - from cssfinder.log import configure_logger + import os + from pprint import pformat + + import pendulum + import rich + from threadpoolctl import threadpool_info + + if numpy_thread_count != -1: + numpy_thread_count_str = str(numpy_thread_count) - configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=False) - ctx.obj = Ctx(is_debug=debug) + os.environ["OMP_NUM_THREADS"] = numpy_thread_count_str + os.environ["OPENBLAS_NUM_THREADS"] = numpy_thread_count_str + os.environ["MKL_NUM_THREADS"] = numpy_thread_count_str + os.environ["VECLIB_MAXIMUM_THREADS"] = numpy_thread_count_str + os.environ["NUMEXPR_NUM_THREADS"] = numpy_thread_count_str + + import numpy as np + + from cssfinder.log import configure_logger, enable_performance_logging + + configure_logger(verbosity=verbose, logger_name="cssfinder", use_rich=is_rich) + ctx.obj = Ctx(is_debug=debug, is_rich=is_rich) + + if seed is not None: + logging.debug("NumPy random number generator seed set to %d", seed) + np.random.seed(seed) # noqa: NPY002 + + logging.debug("\n%s", pformat(threadpool_info(), indent=4)) logging.getLogger("numba").setLevel(logging.ERROR) logging.info("CSSFinder started at %s", pendulum.now().isoformat(sep=" ")) @@ -81,8 +124,8 @@ def main(ctx: click.Context, verbose: int, *, debug: bool, perf_log: bool) -> No enable_performance_logging() if verbose >= VERBOSITY_INFO: - print( - """ + rich.print( + f"""{'[blue]' if is_rich else ''} ██████╗███████╗███████╗███████╗██╗███╗ ██╗██████╗ ███████╗██████╗ ██╔════╝██╔════╝██╔════╝██╔════╝██║████╗ ██║██╔══██╗██╔════╝██╔══██╗ ██║ ███████╗███████╗█████╗ ██║██╔██╗ ██║██║ ██║█████╗ ██████╔╝ @@ -195,6 +238,8 @@ def _project(ctx: click.Context) -> None: @click.pass_obj def _inspect(ctx: Ctx) -> None: """Load and display project.""" + import rich + from cssfinder.cssfproject import CSSFProject if ctx.project_path is None: @@ -390,6 +435,7 @@ def _run_tasks( ctx.project_path, match_, is_debug=ctx.is_debug, + is_rich=ctx.is_rich, force_sequential=force_sequential, max_parallel=max_parallel, ) @@ -486,6 +532,8 @@ def _create_task_report( report.save_default() if open_: report.get_default_dest() + import webbrowser + webbrowser.open(url=report.get_default_dest().as_uri()) except AmbiguousTaskKeyError as exc: @@ -505,6 +553,9 @@ def _create_json_summary(ctx: Ctx, task_pattern: str) -> None: """Load and display project.""" import json + from cssfinder.api import create_report_from + from cssfinder.reports.renderer import ReportType + assert ctx.project_path is not None output = [] @@ -521,6 +572,8 @@ def _create_json_summary(ctx: Ctx, task_pattern: str) -> None: @main.command("list-backends") def _list_backends() -> None: """List available backends.""" + import rich + from cssfinder.algorithm.backend.loader import Loader rich.get_console().print(Loader.new().get_rich_table()) @@ -529,6 +582,8 @@ def _list_backends() -> None: @main.command("list-examples") def _list_examples() -> None: """Show list of all available example projects.""" + import rich + from cssfinder import examples console = rich.get_console() @@ -600,6 +655,8 @@ def _examples_clone( parameter will be considered a example name. """ + import rich + from cssfinder.crossplatform import open_file_explorer, open_terminal from cssfinder.cssfproject import ProjectFileNotFoundError from cssfinder.enums import ExitCode diff --git a/cssfinder/log.py b/cssfinder/log.py index d5b4363..aed910f 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -303,6 +303,7 @@ def run_project_wrapper( tasks: list[str] | None = None, *, is_debug: bool = False, + is_rich: bool = True, force_sequential: bool = False, max_parallel: int = -1, ) -> list[Task]: @@ -311,6 +312,7 @@ def run_project_wrapper( project, tasks, is_debug=is_debug, + is_rich=is_rich, force_sequential=force_sequential, max_parallel=max_parallel, ) diff --git a/poetry.lock b/poetry.lock index 7c7a939..33a115c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3264,6 +3264,18 @@ pure-eval = "*" [package.extras] tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] +[[package]] +name = "threadpoolctl" +version = "3.1.0" +description = "threadpoolctl" +category = "main" +optional = false +python-versions = ">=3.6" +files = [ + {file = "threadpoolctl-3.1.0-py3-none-any.whl", hash = "sha256:8b99adda265feb6773280df41eece7b2e6561b772d21ffd52e372f999024907b"}, + {file = "threadpoolctl-3.1.0.tar.gz", hash = "sha256:a335baacfaa4400ae1f0d8e3a58d6674d2f8828e3716bb2802c44955ad391380"}, +] + [[package]] name = "tinycss2" version = "1.2.1" @@ -3671,4 +3683,4 @@ backend-rust = ["cssfinder-backend-rust"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "6bf699aaca8d6819ab75f0d3f5d686a0effb2975b5690e4d52eb31706f3f35ed" +content-hash = "fab7d39c31eb087d89fe3bdf6186acbb084e2e66579404d2b2decca526de571a" diff --git a/pyproject.toml b/pyproject.toml index 986eaaf..a6a3680 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -29,6 +29,7 @@ jinja2 = "^3.1.2" cssfinder-backend-numpy = { version = ">=0.5.0", optional = true } cssfinder-backend-rust = { version = ">=0.1.1", optional = true } filelock = "^3.12.0" +threadpoolctl = "^3.1.0" [tool.poetry.group.dev.dependencies] # ANCHOR: tool.poetry.dev-dependencies black = ">=22.12,<24.0" From 32c3d83bed41b6998c50c19a8db8bcf1a723963b Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 26 May 2023 21:19:00 +0000 Subject: [PATCH 193/227] Bump tornado from 6.2 to 6.3.2 (#59) --- poetry.lock | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7c7a939..aaf5093 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry and should not be changed by hand. 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{file = "rich-13.3.3-py3-none-any.whl", hash = "sha256:540c7d6d26a1178e8e8b37e9ba44573a3cd1464ff6348b99ee7061b95d1c6333"}, - {file = "rich-13.3.3.tar.gz", hash = "sha256:dc84400a9d842b3a9c5ff74addd8eb798d155f36c1c91303888e0a66850d2a15"}, + {file = "rich-13.4.1-py3-none-any.whl", hash = "sha256:d204aadb50b936bf6b1a695385429d192bc1fdaf3e8b907e8e26f4c4e4b5bf75"}, + {file = "rich-13.4.1.tar.gz", hash = "sha256:76f6b65ea7e5c5d924ba80e322231d7cb5b5981aa60bfc1e694f1bc097fe6fe1"}, ] [package.dependencies] From 6b14b9cf5ab80689d5bb7a240e118749ef41df02 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 16 Jun 2023 11:58:12 +0200 Subject: [PATCH 199/227] Bump typing-extensions from 4.5.0 to 4.6.3 (#66) --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 6364b07..f439bfc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3388,14 +3388,14 @@ files = [ [[package]] name = "typing-extensions" -version = "4.5.0" +version = "4.6.3" description = "Backported and Experimental Type Hints for Python 3.7+" category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"}, - {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"}, + {file = "typing_extensions-4.6.3-py3-none-any.whl", hash = "sha256:88a4153d8505aabbb4e13aacb7c486c2b4a33ca3b3f807914a9b4c844c471c26"}, + {file = "typing_extensions-4.6.3.tar.gz", hash = "sha256:d91d5919357fe7f681a9f2b5b4cb2a5f1ef0a1e9f59c4d8ff0d3491e05c0ffd5"}, ] [[package]] From de750c69dede9aa2f0b1fa26a86958d520cdab4d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 4 Sep 2023 20:59:52 +0200 Subject: [PATCH 200/227] Bump certifi from 2022.12.7 to 2023.7.22 (#72) --- poetry.lock | 158 +++------------------------------------------------- 1 file changed, 7 insertions(+), 151 deletions(-) diff --git a/poetry.lock b/poetry.lock index 57b1f43..40e0fcb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "appdirs" version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" optional = false python-versions = "*" files = [ @@ -16,7 +15,6 @@ files = [ name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -28,7 +26,6 @@ files = [ name = "asttokens" version = "2.2.1" description = "Annotate AST trees with source code positions" -category = "dev" optional = false python-versions = "*" files = [ @@ -46,7 +43,6 @@ test = ["astroid", "pytest"] name = "attrs" version = "22.2.0" description = "Classes Without Boilerplate" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -65,7 +61,6 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy name = "autoflake" version = "2.0.2" description = "Removes unused imports and unused variables" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -81,7 +76,6 @@ tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} name = "backcall" version = "0.2.0" description = "Specifications for callback functions passed in to an API" -category = "dev" optional = false python-versions = "*" files = [ @@ -93,7 +87,6 @@ files = [ name = "black" version = "23.3.0" description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -143,7 +136,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "brotli" version = "1.0.9" description = "Python bindings for the Brotli compression library" -category = "main" optional = false python-versions = "*" files = [ @@ -235,7 +227,6 @@ files = [ name = "brotlicffi" version = "1.0.9.2" description = "Python CFFI bindings to the Brotli library" -category = "main" optional = false python-versions = "*" files = [ @@ -278,7 +269,6 @@ cffi = ">=1.0.0" name = "build" version = "0.10.0" description = "A simple, correct Python build frontend" -category = "dev" optional = false python-versions = ">= 3.7" files = [ @@ -302,7 +292,6 @@ virtualenv = ["virtualenv (>=20.0.35)"] name = "cachecontrol" version = "0.12.11" description = "httplib2 caching for requests" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -321,21 +310,19 @@ redis = ["redis (>=2.10.5)"] [[package]] name = "certifi" -version = "2022.12.7" +version = "2023.7.22" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"}, - {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"}, + {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"}, + {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"}, ] [[package]] name = "cffi" version = "1.15.1" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = "*" files = [ @@ -412,7 +399,6 @@ pycparser = "*" name = "cfgv" version = "3.3.1" description = "Validate configuration and produce human readable error messages." -category = "dev" optional = false python-versions = ">=3.6.1" files = [ @@ -424,7 +410,6 @@ files = [ name = "charset-normalizer" version = "2.1.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "dev" optional = false python-versions = ">=3.6.0" files = [ @@ -439,7 +424,6 @@ unicode-backport = ["unicodedata2"] name = "cleo" version = "2.0.1" description = "Cleo allows you to create beautiful and testable command-line interfaces." -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -455,7 +439,6 @@ rapidfuzz = ">=2.2.0,<3.0.0" name = "click" version = "8.1.3" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -470,7 +453,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -482,7 +464,6 @@ files = [ name = "comm" version = "0.1.2" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -500,7 +481,6 @@ test = ["pytest"] name = "contourpy" version = "1.0.7" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -575,7 +555,6 @@ test-no-images = ["pytest"] name = "coverage" version = "7.2.2" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -642,7 +621,6 @@ toml = ["tomli"] name = "crashtest" version = "0.4.1" description = "Manage Python errors with ease" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -654,7 +632,6 @@ files = [ name = "cryptography" version = "39.0.2" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -700,7 +677,6 @@ tox = ["tox"] name = "cssfinder-backend-numpy" version = "0.5.0" description = "Implementation of CSSFinder backend using NumPy library." -category = "main" optional = false python-versions = ">=3.8,<4.0" files = [ @@ -726,7 +702,6 @@ typing-extensions = ">=4.5.0,<5.0.0" name = "cssfinder-backend-rust" version = "0.1.1" description = "Implementation of CSSFinder backend using Rust." -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -740,7 +715,6 @@ files = [ name = "cssselect2" version = "0.7.0" description = "CSS selectors for Python ElementTree" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -760,7 +734,6 @@ test = ["flake8", "isort", "pytest"] name = "cycler" version = "0.11.0" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -772,7 +745,6 @@ files = [ name = "debugpy" version = "1.6.6" description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -799,7 +771,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -811,7 +782,6 @@ files = [ name = "distlib" version = "0.3.6" description = "Distribution utilities" -category = "dev" optional = false python-versions = "*" files = [ @@ -823,7 +793,6 @@ files = [ name = "dnspython" version = "2.3.0" description = "DNS toolkit" -category = "main" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -844,7 +813,6 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"] name = "docformatter" version = "1.5.1" description = "Formats docstrings to follow PEP 257" -category = "dev" optional = false python-versions = ">=3.6,<4.0" files = [ @@ -864,7 +832,6 @@ tomli = ["tomli (<2.0.0)"] name = "dulwich" version = "0.21.3" description = "Python Git Library" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -939,7 +906,6 @@ pgp = ["gpg"] name = "email-validator" version = "1.3.1" description = "A robust email address syntax and deliverability validation library." -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -955,7 +921,6 @@ idna = ">=2.0.0" name = "exceptiongroup" version = "1.1.1" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -970,7 +935,6 @@ test = ["pytest (>=6)"] name = "executing" version = "1.2.0" description = "Get the currently executing AST node of a frame, and other information" -category = "dev" optional = false python-versions = "*" files = [ @@ -985,7 +949,6 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] name = "filelock" version = "3.12.0" description = "A platform independent file lock." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1001,7 +964,6 @@ testing = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "diff-cover (>=7.5)", "p name = "fonttools" version = "4.39.2" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1032,7 +994,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "html5lib" version = "1.1" description = "HTML parser based on the WHATWG HTML specification" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -1054,7 +1015,6 @@ lxml = ["lxml"] name = "identify" version = "2.5.21" description = "File identification library for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1069,7 +1029,6 @@ license = ["ukkonen"] name = "idna" version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -1081,7 +1040,6 @@ files = [ name = "importlib-metadata" version = "6.1.0" description = "Read metadata from Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1101,7 +1059,6 @@ testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packag name = "importlib-resources" version = "5.12.0" description = "Read resources from Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1120,7 +1077,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1132,7 +1088,6 @@ files = [ name = "installer" version = "0.7.0" description = "A library for installing Python wheels." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1144,7 +1099,6 @@ files = [ name = "ipykernel" version = "6.22.0" description = "IPython Kernel for Jupyter" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1158,7 +1112,7 @@ comm = ">=0.1.1" debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" @@ -1178,7 +1132,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio" name = "ipython" version = "8.11.0" description = "IPython: Productive Interactive Computing" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1217,7 +1170,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa name = "isort" version = "5.12.0" description = "A Python utility / library to sort Python imports." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -1235,7 +1187,6 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"] name = "jaraco-classes" version = "3.2.3" description = "Utility functions for Python class constructs" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1254,7 +1205,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "jedi" version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1274,7 +1224,6 @@ testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jeepney" version = "0.8.0" description = "Low-level, pure Python DBus protocol wrapper." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1290,7 +1239,6 @@ trio = ["async_generator", "trio"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1308,7 +1256,6 @@ i18n = ["Babel (>=2.7)"] name = "jsonref" version = "1.1.0" description = "jsonref is a library for automatic dereferencing of JSON Reference objects for Python." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1320,7 +1267,6 @@ files = [ name = "jsonschema" version = "4.17.3" description = "An implementation of JSON Schema validation for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1342,7 +1288,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jupyter-client" version = "8.1.0" description = "Jupyter protocol implementation and client libraries" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1352,7 +1297,7 @@ files = [ [package.dependencies] importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" tornado = ">=6.2" @@ -1366,7 +1311,6 @@ test = ["codecov", "coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-co name = "jupyter-core" version = "5.3.0" description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1387,7 +1331,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "keyring" version = "23.13.1" description = "Store and access your passwords safely." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1412,7 +1355,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "kiwisolver" version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1490,7 +1432,6 @@ files = [ name = "llvmlite" version = "0.39.1" description = "lightweight wrapper around basic LLVM functionality" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1528,7 +1469,6 @@ files = [ name = "lockfile" version = "0.12.2" description = "Platform-independent file locking module" -category = "dev" optional = false python-versions = "*" files = [ @@ -1540,7 +1480,6 @@ files = [ name = "markdown-it-py" version = "2.2.0" description = "Python port of markdown-it. Markdown parsing, done right!" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1565,7 +1504,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "markupsafe" version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1625,7 +1563,6 @@ files = [ name = "matplotlib" version = "3.7.1" description = "Python plotting package" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1688,7 +1625,6 @@ python-dateutil = ">=2.7" name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1703,7 +1639,6 @@ traitlets = "*" name = "mdurl" version = "0.1.2" description = "Markdown URL utilities" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1715,7 +1650,6 @@ files = [ name = "more-itertools" version = "9.1.0" description = "More routines for operating on iterables, beyond itertools" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1727,7 +1661,6 @@ files = [ name = "msgpack" version = "1.0.5" description = "MessagePack serializer" -category = "dev" optional = false python-versions = "*" files = [ @@ -1800,7 +1733,6 @@ files = [ name = "mypy" version = "1.1.1" description = "Optional static typing for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1847,7 +1779,6 @@ reports = ["lxml"] name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1859,7 +1790,6 @@ files = [ name = "nest-asyncio" version = "1.5.6" description = "Patch asyncio to allow nested event loops" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1871,7 +1801,6 @@ files = [ name = "nodeenv" version = "1.7.0" description = "Node.js virtual environment builder" -category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" files = [ @@ -1886,7 +1815,6 @@ setuptools = "*" name = "numba" version = "0.56.4" description = "compiling Python code using LLVM" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1922,7 +1850,7 @@ files = [ [package.dependencies] importlib-metadata = {version = "*", markers = "python_version < \"3.9\""} -llvmlite = ">=0.39.0dev0,<0.40" +llvmlite = "==0.39.*" numpy = ">=1.18,<1.24" setuptools = "*" @@ -1930,7 +1858,6 @@ setuptools = "*" name = "numpy" version = "1.23.5" description = "NumPy is the fundamental package for array computing with Python." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1968,7 +1895,6 @@ files = [ name = "packaging" version = "23.0" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1980,7 +1906,6 @@ files = [ name = "pandas" version = "1.5.3" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2029,7 +1954,6 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] name = "parso" version = "0.8.3" description = "A Python Parser" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2045,7 +1969,6 @@ testing = ["docopt", "pytest (<6.0.0)"] name = "pastel" version = "0.2.1" description = "Bring colors to your terminal." -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2057,7 +1980,6 @@ files = [ name = "pathspec" version = "0.11.1" description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2069,7 +1991,6 @@ files = [ name = "pendulum" version = "2.1.2" description = "Python datetimes made easy" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -2104,7 +2025,6 @@ pytzdata = ">=2020.1" name = "pexpect" version = "4.8.0" description = "Pexpect allows easy control of interactive console applications." -category = "dev" optional = false python-versions = "*" files = [ @@ -2119,7 +2039,6 @@ ptyprocess = ">=0.5" name = "pickleshare" version = "0.7.5" description = "Tiny 'shelve'-like database with concurrency support" -category = "dev" optional = false python-versions = "*" files = [ @@ -2131,7 +2050,6 @@ files = [ name = "pillow" version = "9.4.0" description = "Python Imaging Library (Fork)" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2222,7 +2140,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa name = "pkginfo" version = "1.9.6" description = "Query metadata from sdists / bdists / installed packages." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2237,7 +2154,6 @@ testing = ["pytest", "pytest-cov"] name = "pkgutil-resolve-name" version = "1.3.10" description = "Resolve a name to an object." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2249,7 +2165,6 @@ files = [ name = "platformdirs" version = "2.6.2" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2265,7 +2180,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2)", "pytest- name = "pluggy" version = "1.0.0" description = "plugin and hook calling mechanisms for python" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2281,7 +2195,6 @@ testing = ["pytest", "pytest-benchmark"] name = "poethepoet" version = "0.19.0" description = "A task runner that works well with poetry." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2300,7 +2213,6 @@ poetry-plugin = ["poetry (>=1.0,<2.0)"] name = "poetry" version = "1.4.2" description = "Python dependency management and packaging made easy." -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2345,7 +2257,6 @@ xattr = {version = ">=0.10.0,<0.11.0", markers = "sys_platform == \"darwin\""} name = "poetry-core" version = "1.5.2" description = "Poetry PEP 517 Build Backend" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2357,7 +2268,6 @@ files = [ name = "poetry-plugin-export" version = "1.3.0" description = "Poetry plugin to export the dependencies to various formats" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2373,7 +2283,6 @@ poetry-core = ">=1.3.0,<2.0.0" name = "pre-commit" version = "3.2.2" description = "A framework for managing and maintaining multi-language pre-commit hooks." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2392,7 +2301,6 @@ virtualenv = ">=20.10.0" name = "prompt-toolkit" version = "3.0.38" description = "Library for building powerful interactive command lines in Python" -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -2407,7 +2315,6 @@ wcwidth = "*" name = "psutil" version = "5.9.4" description = "Cross-platform lib for process and system monitoring in Python." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2434,7 +2341,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] name = "ptpython" version = "3.0.23" description = "Python REPL build on top of prompt_toolkit" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2456,7 +2362,6 @@ ptipython = ["ipython"] name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -2468,7 +2373,6 @@ files = [ name = "pure-eval" version = "0.2.2" description = "Safely evaluate AST nodes without side effects" -category = "dev" optional = false python-versions = "*" files = [ @@ -2483,7 +2387,6 @@ tests = ["pytest"] name = "pycparser" version = "2.21" description = "C parser in Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2495,7 +2398,6 @@ files = [ name = "pydantic" version = "1.10.7" description = "Data validation and settings management using python type hints" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2549,7 +2451,6 @@ email = ["email-validator (>=1.0.3)"] name = "pydyf" version = "0.5.0" description = "A low-level PDF generator." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2565,7 +2466,6 @@ test = ["flake8", "isort", "pillow", "pytest"] name = "pyflakes" version = "3.0.1" description = "passive checker of Python programs" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2577,7 +2477,6 @@ files = [ name = "pygments" version = "2.14.0" description = "Pygments is a syntax highlighting package written in Python." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -2592,7 +2491,6 @@ plugins = ["importlib-metadata"] name = "pyparsing" version = "3.0.9" description = "pyparsing module - Classes and methods to define and execute parsing grammars" -category = "main" optional = false python-versions = ">=3.6.8" files = [ @@ -2607,7 +2505,6 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pyphen" version = "0.14.0" description = "Pure Python module to hyphenate text" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2623,7 +2520,6 @@ test = ["flake8", "isort", "pytest"] name = "pyproject-hooks" version = "1.0.0" description = "Wrappers to call pyproject.toml-based build backend hooks." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2638,7 +2534,6 @@ tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} name = "pyrsistent" version = "0.19.3" description = "Persistent/Functional/Immutable data structures" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2675,7 +2570,6 @@ files = [ name = "pytermgui" version = "7.3.0" description = "Python TUI framework with mouse support, modular widget system, customizable and rapid terminal markup language and more!" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2693,7 +2587,6 @@ yaml = ["pyyaml"] name = "pytest" version = "7.2.2" description = "pytest: simple powerful testing with Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2717,7 +2610,6 @@ testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2. name = "pytest-cov" version = "4.0.0" description = "Pytest plugin for measuring coverage." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2736,7 +2628,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -2751,7 +2642,6 @@ six = ">=1.5" name = "pytz" version = "2022.7.1" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -2763,7 +2653,6 @@ files = [ name = "pytzdata" version = "2020.1" description = "The Olson timezone database for Python." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2775,7 +2664,6 @@ files = [ name = "pywin32" version = "305" description = "Python for Window Extensions" -category = "dev" optional = false python-versions = "*" files = [ @@ -2799,7 +2687,6 @@ files = [ name = "pywin32-ctypes" version = "0.2.0" description = "" -category = "dev" optional = false python-versions = "*" files = [ @@ -2811,7 +2698,6 @@ files = [ name = "pyyaml" version = "6.0" description = "YAML parser and emitter for Python" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2861,7 +2747,6 @@ files = [ name = "pyzmq" version = "25.0.2" description = "Python bindings for 0MQ" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2951,7 +2836,6 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""} name = "rapidfuzz" version = "2.13.7" description = "rapid fuzzy string matching" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3053,7 +2937,6 @@ full = ["numpy"] name = "requests" version = "2.31.0" description = "Python HTTP for Humans." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3075,7 +2958,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "requests-toolbelt" version = "0.10.1" description = "A utility belt for advanced users of python-requests" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -3090,7 +2972,6 @@ requests = ">=2.0.1,<3.0.0" name = "rich" version = "13.3.3" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -3110,7 +2991,6 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"] name = "ruff" version = "0.0.260" description = "An extremely fast Python linter, written in Rust." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3137,7 +3017,6 @@ files = [ name = "scipy" version = "1.9.3" description = "Fundamental algorithms for scientific computing in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3176,7 +3055,6 @@ test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "sciki name = "secretstorage" version = "3.3.3" description = "Python bindings to FreeDesktop.org Secret Service API" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -3192,7 +3070,6 @@ jeepney = ">=0.6" name = "setuptools" version = "67.6.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3209,7 +3086,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs ( name = "shellingham" version = "1.5.0.post1" description = "Tool to Detect Surrounding Shell" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3221,7 +3097,6 @@ files = [ name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -3233,7 +3108,6 @@ files = [ name = "snakeviz" version = "2.1.1" description = "A web-based viewer for Python profiler output" -category = "dev" optional = false python-versions = "*" files = [ @@ -3248,7 +3122,6 @@ tornado = ">=2.0" name = "stack-data" version = "0.6.2" description = "Extract data from python stack frames and tracebacks for informative displays" -category = "dev" optional = false python-versions = "*" files = [ @@ -3268,7 +3141,6 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] name = "tinycss2" version = "1.2.1" description = "A tiny CSS parser" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3287,7 +3159,6 @@ test = ["flake8", "isort", "pytest"] name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3299,7 +3170,6 @@ files = [ name = "tomlkit" version = "0.11.6" description = "Style preserving TOML library" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -3311,7 +3181,6 @@ files = [ name = "tornado" version = "6.3.2" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." -category = "dev" optional = false python-versions = ">= 3.8" files = [ @@ -3332,7 +3201,6 @@ files = [ name = "traitlets" version = "5.9.0" description = "Traitlets Python configuration system" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3348,7 +3216,6 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] name = "trove-classifiers" version = "2023.3.9" description = "Canonical source for classifiers on PyPI (pypi.org)." -category = "dev" optional = false python-versions = "*" files = [ @@ -3360,7 +3227,6 @@ files = [ name = "typing-extensions" version = "4.5.0" description = "Backported and Experimental Type Hints for Python 3.7+" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3372,7 +3238,6 @@ files = [ name = "untokenize" version = "0.1.1" description = "Transforms tokens into original source code (while preserving whitespace)." -category = "dev" optional = false python-versions = "*" files = [ @@ -3383,7 +3248,6 @@ files = [ name = "urllib3" version = "1.26.15" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -3400,7 +3264,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] name = "virtualenv" version = "20.16.5" description = "Virtual Python Environment builder" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -3421,7 +3284,6 @@ testing = ["coverage (>=6.2)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7 name = "virtualenv" version = "20.21.0" description = "Virtual Python Environment builder" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3442,7 +3304,6 @@ test = ["covdefaults (>=2.2.2)", "coverage (>=7.1)", "coverage-enable-subprocess name = "wcwidth" version = "0.2.6" description = "Measures the displayed width of unicode strings in a terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -3454,7 +3315,6 @@ files = [ name = "weasyprint" version = "58.1" description = "The Awesome Document Factory" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3480,7 +3340,6 @@ test = ["flake8", "isort", "pytest"] name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -category = "main" optional = false python-versions = "*" files = [ @@ -3492,7 +3351,6 @@ files = [ name = "xattr" version = "0.10.1" description = "Python wrapper for extended filesystem attributes" -category = "dev" optional = false python-versions = "*" files = [ @@ -3577,7 +3435,6 @@ cffi = ">=1.0" name = "zipp" version = "3.15.0" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3593,7 +3450,6 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more name = "zopfli" version = "0.2.2" description = "Zopfli module for python" -category = "main" optional = false python-versions = ">=3.7" files = [ From a7e606e57ed75d95f1d668594e5648716e7da8d7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 4 Sep 2023 21:00:07 +0200 Subject: [PATCH 201/227] Bump autoflake from 2.0.2 to 2.2.1 (#76) --- poetry.lock | 166 ++++------------------------------------------------ 1 file changed, 10 insertions(+), 156 deletions(-) diff --git a/poetry.lock b/poetry.lock index f439bfc..622f1fe 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. [[package]] name = "appdirs" version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" optional = false python-versions = "*" files = [ @@ -16,7 +15,6 @@ files = [ name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -28,7 +26,6 @@ files = [ name = "asttokens" version = "2.2.1" description = "Annotate AST trees with source code positions" -category = "dev" optional = false python-versions = "*" files = [ @@ -46,7 +43,6 @@ test = ["astroid", "pytest"] name = "attrs" version = "22.2.0" description = "Classes Without Boilerplate" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -63,14 +59,13 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy [[package]] name = "autoflake" -version = "2.0.2" +version = "2.2.1" description = "Removes unused imports and unused variables" -category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "autoflake-2.0.2-py3-none-any.whl", hash = "sha256:a82d8efdcbbb7129a8a23238c529fb9d9919c562e26bb7963ea6890fbfff7d02"}, - {file = "autoflake-2.0.2.tar.gz", hash = "sha256:e0164421ff13f805f08a023e249d84200bd00463d213b490906bfefa67e83830"}, + {file = "autoflake-2.2.1-py3-none-any.whl", hash = "sha256:265cde0a43c1f44ecfb4f30d95b0437796759d07be7706a2f70e4719234c0f79"}, + {file = "autoflake-2.2.1.tar.gz", hash = "sha256:62b7b6449a692c3c9b0c916919bbc21648da7281e8506bcf8d3f8280e431ebc1"}, ] [package.dependencies] @@ -81,7 +76,6 @@ tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} name = "backcall" version = "0.2.0" description = "Specifications for callback functions passed in to an API" -category = "dev" optional = false python-versions = "*" files = [ @@ -93,7 +87,6 @@ files = [ name = "black" version = "23.3.0" description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -143,7 +136,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "brotli" version = "1.0.9" description = "Python bindings for the Brotli compression library" -category = "main" optional = false python-versions = "*" files = [ @@ -235,7 +227,6 @@ files = [ name = "brotlicffi" version = "1.0.9.2" description = "Python CFFI bindings to the Brotli library" -category = "main" optional = false python-versions = "*" files = [ @@ -278,7 +269,6 @@ cffi = ">=1.0.0" name = "build" version = "0.10.0" description = "A simple, correct Python build frontend" -category = "dev" optional = false python-versions = ">= 3.7" files = [ @@ -302,7 +292,6 @@ virtualenv = ["virtualenv (>=20.0.35)"] name = "cachecontrol" version = "0.12.11" description = "httplib2 caching for requests" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -323,7 +312,6 @@ redis = ["redis (>=2.10.5)"] name = "certifi" version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -335,7 +323,6 @@ files = [ name = "cffi" version = "1.15.1" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = "*" files = [ @@ -412,7 +399,6 @@ pycparser = "*" name = "cfgv" version = "3.3.1" description = "Validate configuration and produce human readable error messages." -category = "dev" optional = false python-versions = ">=3.6.1" files = [ @@ -424,7 +410,6 @@ files = [ name = "charset-normalizer" version = "2.1.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "dev" optional = false python-versions = ">=3.6.0" files = [ @@ -439,7 +424,6 @@ unicode-backport = ["unicodedata2"] name = "cleo" version = "2.0.1" description = "Cleo allows you to create beautiful and testable command-line interfaces." -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -455,7 +439,6 @@ rapidfuzz = ">=2.2.0,<3.0.0" name = "click" version = "8.1.3" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -470,7 +453,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -482,7 +464,6 @@ files = [ name = "comm" version = "0.1.2" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -500,7 +481,6 @@ test = ["pytest"] name = "contourpy" version = "1.0.7" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -575,7 +555,6 @@ test-no-images = ["pytest"] name = "coverage" version = "7.2.2" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -642,7 +621,6 @@ toml = ["tomli"] name = "crashtest" version = "0.4.1" description = "Manage Python errors with ease" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -654,7 +632,6 @@ files = [ name = "cryptography" version = "39.0.2" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -700,7 +677,6 @@ tox = ["tox"] name = "cssfinder-backend-numpy" version = "0.5.0" description = "Implementation of CSSFinder backend using NumPy library." -category = "main" optional = false python-versions = ">=3.8,<4.0" files = [ @@ -726,7 +702,6 @@ typing-extensions = ">=4.5.0,<5.0.0" name = "cssfinder-backend-rust" version = "0.1.1" description = "Implementation of CSSFinder backend using Rust." -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -740,7 +715,6 @@ files = [ name = "cssselect2" version = "0.7.0" description = "CSS selectors for Python ElementTree" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -760,7 +734,6 @@ test = ["flake8", "isort", "pytest"] name = "cycler" version = "0.11.0" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -772,7 +745,6 @@ files = [ name = "debugpy" version = "1.6.6" description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -799,7 +771,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -811,7 +782,6 @@ files = [ name = "distlib" version = "0.3.6" description = "Distribution utilities" -category = "dev" optional = false python-versions = "*" files = [ @@ -823,7 +793,6 @@ files = [ name = "dnspython" version = "2.3.0" description = "DNS toolkit" -category = "main" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -844,7 +813,6 @@ wmi = ["wmi (>=1.5.1,<2.0.0)"] name = "docformatter" version = "1.5.1" description = "Formats docstrings to follow PEP 257" -category = "dev" optional = false python-versions = ">=3.6,<4.0" files = [ @@ -864,7 +832,6 @@ tomli = ["tomli (<2.0.0)"] name = "dulwich" version = "0.21.3" description = "Python Git Library" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -939,7 +906,6 @@ pgp = ["gpg"] name = "email-validator" version = "1.3.1" description = "A robust email address syntax and deliverability validation library." -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -955,7 +921,6 @@ idna = ">=2.0.0" name = "exceptiongroup" version = "1.1.1" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -970,7 +935,6 @@ test = ["pytest (>=6)"] name = "executing" version = "1.2.0" description = "Get the currently executing AST node of a frame, and other information" -category = "dev" optional = false python-versions = "*" files = [ @@ -985,7 +949,6 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] name = "filelock" version = "3.12.0" description = "A platform independent file lock." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1001,7 +964,6 @@ testing = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "diff-cover (>=7.5)", "p name = "fonttools" version = "4.39.2" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1032,7 +994,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "html5lib" version = "1.1" description = "HTML parser based on the WHATWG HTML specification" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -1054,7 +1015,6 @@ lxml = ["lxml"] name = "identify" version = "2.5.21" description = "File identification library for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1069,7 +1029,6 @@ license = ["ukkonen"] name = "idna" version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -1081,7 +1040,6 @@ files = [ name = "importlib-metadata" version = "6.1.0" description = "Read metadata from Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1101,7 +1059,6 @@ testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packag name = "importlib-resources" version = "5.12.0" description = "Read resources from Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1120,7 +1077,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1132,7 +1088,6 @@ files = [ name = "installer" version = "0.7.0" description = "A library for installing Python wheels." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1144,7 +1099,6 @@ files = [ name = "ipykernel" version = "6.22.0" description = "IPython Kernel for Jupyter" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1158,7 +1112,7 @@ comm = ">=0.1.1" debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" @@ -1178,7 +1132,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio" name = "ipython" version = "8.11.0" description = "IPython: Productive Interactive Computing" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1217,7 +1170,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa name = "isort" version = "5.12.0" description = "A Python utility / library to sort Python imports." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -1235,7 +1187,6 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"] name = "jaraco-classes" version = "3.2.3" description = "Utility functions for Python class constructs" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1254,7 +1205,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "jedi" version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1274,7 +1224,6 @@ testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jeepney" version = "0.8.0" description = "Low-level, pure Python DBus protocol wrapper." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1290,7 +1239,6 @@ trio = ["async_generator", "trio"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1308,7 +1256,6 @@ i18n = ["Babel (>=2.7)"] name = "jsonref" version = "1.1.0" description = "jsonref is a library for automatic dereferencing of JSON Reference objects for Python." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1320,7 +1267,6 @@ files = [ name = "jsonschema" version = "4.17.3" description = "An implementation of JSON Schema validation for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1342,7 +1288,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jupyter-client" version = "8.1.0" description = "Jupyter protocol implementation and client libraries" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1352,7 +1297,7 @@ files = [ [package.dependencies] importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" tornado = ">=6.2" @@ -1366,7 +1311,6 @@ test = ["codecov", "coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-co name = "jupyter-core" version = "5.3.0" description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1387,7 +1331,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "keyring" version = "23.13.1" description = "Store and access your passwords safely." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1412,7 +1355,6 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec name = "kiwisolver" version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1490,7 +1432,6 @@ files = [ name = "llvmlite" version = "0.39.1" description = "lightweight wrapper around basic LLVM functionality" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1528,7 +1469,6 @@ files = [ name = "lockfile" version = "0.12.2" description = "Platform-independent file locking module" -category = "dev" optional = false python-versions = "*" files = [ @@ -1540,7 +1480,6 @@ files = [ name = "markdown-it-py" version = "2.2.0" description = "Python port of markdown-it. Markdown parsing, done right!" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1565,7 +1504,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "markupsafe" version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1625,7 +1563,6 @@ files = [ name = "matplotlib" version = "3.7.1" description = "Python plotting package" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1688,7 +1625,6 @@ python-dateutil = ">=2.7" name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1703,7 +1639,6 @@ traitlets = "*" name = "mdurl" version = "0.1.2" description = "Markdown URL utilities" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1715,7 +1650,6 @@ files = [ name = "more-itertools" version = "9.1.0" description = "More routines for operating on iterables, beyond itertools" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1727,7 +1661,6 @@ files = [ name = "msgpack" version = "1.0.5" description = "MessagePack serializer" -category = "dev" optional = false python-versions = "*" files = [ @@ -1800,7 +1733,6 @@ files = [ name = "mypy" version = "1.3.0" description = "Optional static typing for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1847,7 +1779,6 @@ reports = ["lxml"] name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1859,7 +1790,6 @@ files = [ name = "nest-asyncio" version = "1.5.6" description = "Patch asyncio to allow nested event loops" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1871,7 +1801,6 @@ files = [ name = "nodeenv" version = "1.7.0" description = "Node.js virtual environment builder" -category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" files = [ @@ -1886,7 +1815,6 @@ setuptools = "*" name = "numba" version = "0.56.4" description = "compiling Python code using LLVM" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1922,7 +1850,7 @@ files = [ [package.dependencies] importlib-metadata = {version = "*", markers = "python_version < \"3.9\""} -llvmlite = ">=0.39.0dev0,<0.40" +llvmlite = "==0.39.*" numpy = ">=1.18,<1.24" setuptools = "*" @@ -1930,7 +1858,6 @@ setuptools = "*" name = "numpy" version = "1.23.5" description = "NumPy is the fundamental package for array computing with Python." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1968,7 +1895,6 @@ files = [ name = "packaging" version = "23.0" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1980,7 +1906,6 @@ files = [ name = "pandas" version = "2.0.1" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2014,8 +1939,8 @@ files = [ [package.dependencies] numpy = [ {version = ">=1.20.3", markers = "python_version < \"3.10\""}, - {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, + {version = ">=1.21.0", markers = "python_version >= \"3.10\" and python_version < \"3.11\""}, ] python-dateutil = ">=2.8.2" pytz = ">=2020.1" @@ -2048,7 +1973,6 @@ xml = ["lxml (>=4.6.3)"] name = "parso" version = "0.8.3" description = "A Python Parser" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2064,7 +1988,6 @@ testing = ["docopt", "pytest (<6.0.0)"] name = "pastel" version = "0.2.1" description = "Bring colors to your terminal." -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2076,7 +1999,6 @@ files = [ name = "pathspec" version = "0.11.1" description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2088,7 +2010,6 @@ files = [ name = "pendulum" version = "2.1.2" description = "Python datetimes made easy" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -2123,7 +2044,6 @@ pytzdata = ">=2020.1" name = "pexpect" version = "4.8.0" description = "Pexpect allows easy control of interactive console applications." -category = "dev" optional = false python-versions = "*" files = [ @@ -2138,7 +2058,6 @@ ptyprocess = ">=0.5" name = "pickleshare" version = "0.7.5" description = "Tiny 'shelve'-like database with concurrency support" -category = "dev" optional = false python-versions = "*" files = [ @@ -2150,7 +2069,6 @@ files = [ name = "pillow" version = "9.4.0" description = "Python Imaging Library (Fork)" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2241,7 +2159,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa name = "pkginfo" version = "1.9.6" description = "Query metadata from sdists / bdists / installed packages." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2256,7 +2173,6 @@ testing = ["pytest", "pytest-cov"] name = "pkgutil-resolve-name" version = "1.3.10" description = "Resolve a name to an object." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2268,7 +2184,6 @@ files = [ name = "platformdirs" version = "2.6.2" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2284,7 +2199,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2)", "pytest- name = "pluggy" version = "1.0.0" description = "plugin and hook calling mechanisms for python" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2300,7 +2214,6 @@ testing = ["pytest", "pytest-benchmark"] name = "poethepoet" version = "0.19.0" description = "A task runner that works well with poetry." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2319,7 +2232,6 @@ poetry-plugin = ["poetry (>=1.0,<2.0)"] name = "poetry" version = "1.4.2" description = "Python dependency management and packaging made easy." -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2355,8 +2267,8 @@ tomlkit = ">=0.11.1,<0.11.2 || >0.11.2,<0.11.3 || >0.11.3,<1.0.0" trove-classifiers = ">=2022.5.19" urllib3 = ">=1.26.0,<2.0.0" virtualenv = [ - {version = ">=20.4.3,<20.4.5 || >20.4.5,<20.4.6 || >20.4.6,<21.0.0", markers = "sys_platform != \"win32\" or python_version != \"3.9\""}, {version = ">=20.4.3,<20.4.5 || >20.4.5,<20.4.6 || >20.4.6,<20.16.6", markers = "sys_platform == \"win32\" and python_version == \"3.9\""}, + {version = ">=20.4.3,<20.4.5 || >20.4.5,<20.4.6 || >20.4.6,<21.0.0", markers = "sys_platform != \"win32\" or python_version != \"3.9\""}, ] xattr = {version = ">=0.10.0,<0.11.0", markers = "sys_platform == \"darwin\""} @@ -2364,7 +2276,6 @@ xattr = {version = ">=0.10.0,<0.11.0", markers = "sys_platform == \"darwin\""} name = "poetry-core" version = "1.5.2" description = "Poetry PEP 517 Build Backend" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2376,7 +2287,6 @@ files = [ name = "poetry-plugin-export" version = "1.3.0" description = "Poetry plugin to export the dependencies to various formats" -category = "dev" optional = false python-versions = ">=3.7,<4.0" files = [ @@ -2392,7 +2302,6 @@ poetry-core = ">=1.3.0,<2.0.0" name = "pre-commit" version = "3.2.2" description = "A framework for managing and maintaining multi-language pre-commit hooks." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2411,7 +2320,6 @@ virtualenv = ">=20.10.0" name = "prompt-toolkit" version = "3.0.38" description = "Library for building powerful interactive command lines in Python" -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -2426,7 +2334,6 @@ wcwidth = "*" name = "psutil" version = "5.9.4" description = "Cross-platform lib for process and system monitoring in Python." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2453,7 +2360,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] name = "ptpython" version = "3.0.23" description = "Python REPL build on top of prompt_toolkit" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2475,7 +2381,6 @@ ptipython = ["ipython"] name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -2487,7 +2392,6 @@ files = [ name = "pure-eval" version = "0.2.2" description = "Safely evaluate AST nodes without side effects" -category = "dev" optional = false python-versions = "*" files = [ @@ -2502,7 +2406,6 @@ tests = ["pytest"] name = "pycparser" version = "2.21" description = "C parser in Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2514,7 +2417,6 @@ files = [ name = "pydantic" version = "1.10.7" description = "Data validation and settings management using python type hints" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2568,7 +2470,6 @@ email = ["email-validator (>=1.0.3)"] name = "pydyf" version = "0.5.0" description = "A low-level PDF generator." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2584,7 +2485,6 @@ test = ["flake8", "isort", "pillow", "pytest"] name = "pyflakes" version = "3.0.1" description = "passive checker of Python programs" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2596,7 +2496,6 @@ files = [ name = "pygments" version = "2.14.0" description = "Pygments is a syntax highlighting package written in Python." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -2611,7 +2510,6 @@ plugins = ["importlib-metadata"] name = "pyparsing" version = "3.0.9" description = "pyparsing module - Classes and methods to define and execute parsing grammars" -category = "main" optional = false python-versions = ">=3.6.8" files = [ @@ -2626,7 +2524,6 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pyphen" version = "0.14.0" description = "Pure Python module to hyphenate text" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2642,7 +2539,6 @@ test = ["flake8", "isort", "pytest"] name = "pyproject-hooks" version = "1.0.0" description = "Wrappers to call pyproject.toml-based build backend hooks." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2657,7 +2553,6 @@ tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} name = "pyrsistent" version = "0.19.3" description = "Persistent/Functional/Immutable data structures" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2694,7 +2589,6 @@ files = [ name = "pytermgui" version = "7.3.0" description = "Python TUI framework with mouse support, modular widget system, customizable and rapid terminal markup language and more!" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2712,7 +2606,6 @@ yaml = ["pyyaml"] name = "pytest" version = "7.3.1" description = "pytest: simple powerful testing with Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2735,7 +2628,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no name = "pytest-cov" version = "4.0.0" description = "Pytest plugin for measuring coverage." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2754,7 +2646,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -2769,7 +2660,6 @@ six = ">=1.5" name = "pytz" version = "2022.7.1" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -2781,7 +2671,6 @@ files = [ name = "pytzdata" version = "2020.1" description = "The Olson timezone database for Python." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2793,7 +2682,6 @@ files = [ name = "pywin32" version = "305" description = "Python for Window Extensions" -category = 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+pygments = "^2.15.1" +pymdown-extensions = "^10.3" +mike = "^1.1.2" + [tool.poetry.extras] backend-numpy = ["cssfinder-backend-numpy"] backend-rust = ["cssfinder-backend-rust"] From 0ffed8d5a7bd1d559a4ba9a7a09212a4e0f9ce9d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 15 Apr 2024 22:49:25 +0200 Subject: [PATCH 209/227] Remove autocopyright for compatibility reasons --- .pre-commit-config.yaml | 24 ------------------------ 1 file changed, 24 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d3801f7..6085575 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,29 +1,5 @@ exclude: '^(\.tox|\.env|dist|\.vscode)(/|$)' repos: - - repo: https://github.com/Argmaster/autocopyright - rev: "v1.1.0" - hooks: - - id: autocopyright - args: - [ - -s, - "#", - -d, - cssfinder, - -d, - test, - -d, - scripts, - -d, - examples, - -g, - "*.py", - -g, - "*.pyi", - -l, - "./scripts/templates/MIT.md.jinja2", - ] - - repo: https://github.com/PyCQA/autoflake rev: "v2.0.1" hooks: From cdc16a94e20dc16843b87dd3b502ed7477d000ca Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 15 Apr 2024 22:51:38 +0200 Subject: [PATCH 210/227] Update ruff in pre-commit to 0.3.7 --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6085575..81bfd79 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -70,7 +70,7 @@ repos: - repo: https://github.com/charliermarsh/ruff-pre-commit # Ruff version. - rev: "v0.0.254" + rev: "v0.3.7" hooks: - id: ruff args: ["--fix"] From 177cbff73090f99803f6b793140e431dd82506b0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Mon, 15 Apr 2024 23:05:16 +0200 Subject: [PATCH 211/227] Add work-in-progress documentation along with interface updates --- README.md | 244 +++---------- cssfinder/api.py | 19 +- cssfinder/cli.py | 214 ++++++++--- cssfinder/cssfproject.py | 46 ++- cssfinder/interactive.py | 30 +- docs/Changelog.md | 1 + docs/LICENSE.md | 3 + docs/README.md | 1 + docs/css/extra.css | 3 + docs/generate_reference_pages.py | 35 ++ docs/images/logo.png | Bin 0 -> 176074 bytes docs/images/logo.svg | 47 +++ docs/images/logo_white.png | Bin 0 -> 137741 bytes docs/images/logo_white.svg | 47 +++ docs/js/extra.js | 0 docs/macros/main.py | 26 ++ docs/ruff.toml | 6 + docs/usage/00_installation_guide.md | 1 + docs/usage/01_quick_start.md | 325 +++++++++++++++++ mkdocs.yaml | 123 +++++++ pyproject.toml | 533 +++------------------------- 21 files changed, 949 insertions(+), 755 deletions(-) create mode 100644 docs/Changelog.md create mode 100644 docs/LICENSE.md create mode 100644 docs/README.md create mode 100644 docs/css/extra.css create mode 100644 docs/generate_reference_pages.py create mode 100644 docs/images/logo.png create mode 100644 docs/images/logo.svg create mode 100644 docs/images/logo_white.png create mode 100644 docs/images/logo_white.svg create mode 100644 docs/js/extra.js create mode 100644 docs/macros/main.py create mode 100644 docs/ruff.toml create mode 100644 docs/usage/00_installation_guide.md create mode 100644 docs/usage/01_quick_start.md create mode 100644 mkdocs.yaml diff --git a/README.md b/README.md index e7ba97c..9dafc7d 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,27 @@ -# CSSFinder - Closest Separable State Finder +

+ +

+ +

CSSFinder

+ +

+ GitHub release + GitHub Release Date - Published_At + PyPI release + PyPI Downloads + Supported Python versions + Supported Python implementations + license_mit + Pull requests + Open issues + GitHub repo size + GitHub code size in bytes + GitHub Repo stars + Poetry + Code Style +

+ +## CSSFinder - Closest Separable State Finder CSSFinder is a software designed to find the closest separable state (CSS) for a given quantum state. This helps in quantifying entanglement and classifying @@ -24,7 +47,7 @@ algorithm were created: Development of those two implementations allowed us to better understand limits of what can and what can not become faster. -## Installing +## Installation To install CSSFinder from PyPI, use `pip` in terminal: @@ -47,13 +70,18 @@ pip install cssfinder[rust] You don't need both, one will be perfectly fine. Alternatively, you may find `cssfinder-backend-numpy` and `cssfinder-backend-rust` on PyPI and install them manually, with exact same effect. Backends are dynamically detected from all -locations, Python can import modules, thus any valid way of making backend code -reachable for interpreter will work. +locations from where Python can import modules, thus any valid way of making +backend code reachable for interpreter will work. -If you want to use development version, traverse `Development` and `Packaging` -sections below. +### Development version -### But there is a catch! +To install development version of CSSFinder, you can use `pip` in terminal: + +``` +pip install git+https://github.com/Argmaster/pygerber +``` + +### For windows users CSSFinder can export PDF reports (and other formats too), but it uses `weasyprint` for that and `weasyprint` relies on `GTK3`. Unfortunately it is @@ -67,132 +95,38 @@ its seamless to do that. Its worth mentioning that other formats are not affected by this issue. -## Examples +## Quick start guide -Fortunately for all newcomers, CSSFinders comes in with some example projects, -which may come in handy while starting to describe your first project. - -List of examples available with CSSFinder can be obtained with command: - -``` -cssfinder examples list -``` +For quick start guide please visit +[Quick Start Guide](https://argmaster.github.io/cssfinder/latest/usage/01_quick_start.md) +in CSSFinder online documentation. -Afterwards you should be presented with table, within console window, similar -to this one: +## Command line interface -![image](https://user-images.githubusercontent.com/56170852/233212801-6cd1fb3e-ae91-4878-81d7-d972431850ed.png) - -For sake of example, let's assume that name `5qubits_json` caught our eye, and -now we are willing to spend some of our precious time diving deeper into what's -inside. To do that, we have to clone this example somewhere with following -command: +To display command line interface map use following command: ``` -cssfinder examples clone --name 5qubits_json +cssfinder show-command-tree ``` -> This command, similarly to all other commands of all other CSSFinder -> commands, can be used with `--help` flag to inspect possible invocation -> parameters. - -As result, you should find `5qubits_json` directory have been created in your -current working directory. - -> Example `5qubits_json` relies on `numpy` backend, make sure to install it, if -> you haven't done it before. - -![image](https://user-images.githubusercontent.com/56170852/233217324-9b51d732-18a6-4297-91d7-b277c73edfd6.png) +Output should look similar to this: -Now we can proceed with running tasks defined within the project. That can be -achieved with following command: - -``` -cssfinder project -p ./5qubits_json/ task run -``` - -This command will run all tasks, which may take something in between of few -seconds and few minutes, depending on your hardware. - -Result of calculations can be inspected in `output/` directory in project -folder (`5qubits_json/`). - -![image](https://user-images.githubusercontent.com/56170852/233218942-ac47a923-21f7-4b3a-af02-7a7961360abc.png) - -## Workflow - -In CSSFinder, computations are described in special `cssfproject.*` files -within dedicated directories. Such directory with all files within it is called -a `project`. Project must contain either `cssfproject.json` or `cssfproject.py` -files which describe what should be done. `Json` file is purely declarative, -but with `$ref` support, while python scripts (`cssfproject.py`) allow for -dynamic creation of tasks. Tasks are smallest possible unit of work which can -be scheduled for execution by CSSFinder. They can be automatically executed in -parallel with automatic queues to speed up calculations. - -### Project with static (json) project - -During this tutorial it is preferable to create an empty directory and do -everything from now on within this directory. Let's call this directory -`tutorial1` and we will create it in home directory (`~`). - -``` -~/tutorial1/ -``` - -Start by creating new directory, `project1`, in there. This directory will -contain all project files needed for calculations. - -Fastest way to start with CSSFinder is to use static `json` files, therefore -this is what we are going to use now. - -Create `cssfproject.json` file in `~/tutorial1/project1` directory. - -We will use our example `state.mtx` file, but you can use Your own real data. - -Create `state.mtx` file within `~/tutorial1/project1` directory and fill it -with following data: - -``` -%%MatrixMarket matrix array real symmetric -%Created with the Wolfram Language : www.wolfram.com -8 8 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - -2.5000000000000000E-01 - 0.0000000000000000E+00 - -2.5000000000000000E-01 - -2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 +```log +main - CSSFinder is a script for finding closest separable states. +├── clone-example - Clone one of examples to specific location. +├── create-new-project - Create new project. +├── list-backends - List available backends. +├── list-examples - Show list of all available example projects. +├── project - Group of commands for interaction with projects. +│ ├── add-gilbert-task - Add new gilbert algorithm task. +│ ├── create-json-summary - Load and display project. +│ ├── create-task-report - Create short report for task. +│ ├── inspect - Load project from PROJECT_PATH and display its contents. +│ ├── inspect-output - Load project from PROJECT_PATH and display output of task specified by +│ ├── inspect-tasks - Load project from PROJECT_PATH and inspect configuration of tasks specified by +│ ├── list-tasks - Load project from PROJECT_PATH and list names of all tasks defined. +│ └── run-tasks - Run tasks from the project. +└── show-command-tree - Show the command tree of your CLI. ``` ## Development @@ -373,63 +307,3 @@ Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): ``` snakeviz "#examples_profile_5qubits_prof.prof" ``` - -## Command Line Interface - -The `CSSFinder` is a script that finds the closest separable states. The script -offers a command-line interface that allows you to execute different tasks -related to your CSSFinder project. This documentation will provide a summary of -the commands and options available. - -Once you have installed CSSFinder, you can use it from the command line: - -`cssfinder [OPTIONS] COMMAND [ARGS]... ` - -You can run `cssfinder` without any arguments to display a help message. - -## Options - -The following options are available: - -- `-v`, `--verbose`: increases the verbosity of logging messages. You can use - `-v` up to `-vvv` to increase the verbosity level. -- `--debug`: enables debug mode. -- `-V`, `--version`: shows the version number of CSSFinder and exits. - -## Commands - -The following commands are available: - -### project - -This command allows you to interact with a CSSFinder project. You need to -provide the path to your project as an argument. - -#### run - -This command runs all tasks in a CSSFinder project. - -`cssfinder project run [OPTIONS] ` - -##### Options - -- `-t`, `--tasks`: run specific tasks from the project. You can specify - multiple tasks by using this option multiple times. - -#### task-report - -This command generates a short report for a single task in a CSSFinder project. - -`cssfinder project task-report TASK [OPTIONS] ` - -##### Arguments - -- `TASK`: the name of the task to generate the report for. - -##### Options - -- `--html`, `--no-html`: include or exclude an HTML report in the generated - report. -- `--pdf`, `--no-pdf`: include or exclude a PDF report in the generated report. - -- `--open`, `--no-open`: automatically open report in web browser. diff --git a/cssfinder/api.py b/cssfinder/api.py index 93f688b..f4037be 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -102,7 +102,7 @@ def run_project( else: with ProcessPoolExecutor( - max_parallel if max_parallel > 0 else None + max_parallel if max_parallel > 0 else None, ) as executor: out = executor.map( run_task, @@ -216,7 +216,10 @@ def run_gilbert( def create_gilbert( - config: GilbertCfg, asset_io: GilbertIO, *, is_debug: bool + config: GilbertCfg, + asset_io: GilbertIO, + *, + is_debug: bool, ) -> Gilbert: """Create Gilbert object from configuration with help of specified IO. @@ -282,7 +285,9 @@ def create_gilbert( def create_report_from( - project_file_path: Path | str, task: str, reports: list[ReportType] + project_file_path: Path | str, + task: str, + reports: list[ReportType], ) -> Iterable[Report]: """Load project (`cssfproject.json`) and create report for task selected by pattern. @@ -318,7 +323,9 @@ def create_report_from( def create_report( - project: CSSFProject, task: str, reports: list[ReportType] + project: CSSFProject, + task: str, + reports: list[ReportType], ) -> Iterable[Report]: """Create report for task selected by pattern from project object.""" tasks = project.select_tasks([task]) @@ -331,7 +338,9 @@ def create_report( for report_type in reports: logging.info( - "Report for task %s of type %s", task_object.task_name, report_type.name + "Report for task %s of type %s", + task_object.task_name, + report_type.name, ) yield prepared_manager.request_report(report_type) diff --git a/cssfinder/cli.py b/cssfinder/cli.py index a8f1992..73af16f 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -46,7 +46,7 @@ class Ctx: is_debug: bool = False is_rich: bool = True - project_path: str | None = None + project_path: Path | None = None @click.group(invoke_without_command=True, no_args_is_help=True) @@ -159,8 +159,14 @@ def __init__( @property def name(self) -> str: - assert self.command is not None - assert self.command.name is not None + if self.command is None: + msg = "Command is not set." + raise TypeError(msg) + + if self.command.name is None: + msg = "Command name is not set." + raise TypeError(msg) + return self.command.name def __repr__(self) -> str: @@ -171,7 +177,7 @@ def _build_command_tree(click_command: click.Command) -> _CommandWrapper: wrapper = _CommandWrapper(click_command) if isinstance(click_command, click.core.Group): - for _, cmd in click_command.commands.items(): + for cmd in click_command.commands.values(): if not getattr(cmd, "hidden", False): wrapper.children.append(_build_command_tree(cmd)) @@ -228,46 +234,112 @@ def _project_new( @main.group("project") -@click.pass_context -def _project(ctx: click.Context) -> None: +def _project() -> None: """Group of commands for interaction with projects.""" - ctx.obj.project_path = Path.cwd().as_posix() + + +def _add_project_path_argument(function: Callable) -> Callable: + return click.argument("project_path", type=_project_path_validator)(function) + + +def _project_path_validator(param: str) -> Path: + """Check if provided path is a valid project path.""" + from cssfinder.cssfproject import CSSFProject + + project_path = Path(param).expanduser().resolve() + + if not CSSFProject.is_project_path(project_path): + msg = "Provided path is not a valid project path." + raise click.BadParameter(msg) + + return project_path @_project.command("inspect") -@click.pass_obj -def _inspect(ctx: Ctx) -> None: - """Load and display project.""" +@_add_project_path_argument +def _inspect(project_path: Path) -> None: + """Load project from PROJECT_PATH and display its contents. + + This command allows for inspection of task list and project metadata from command + line. + + """ import rich from cssfinder.cssfproject import CSSFProject - if ctx.project_path is None: - reason = "ctx.project_path shall not be None." - raise RuntimeError(reason) - - project = CSSFProject.load_project(ctx.project_path) + project = CSSFProject.load_project(project_path) rich.print_json(project.json(indent=4)) -@_project.command("inspect-output") +@_project.command("list-tasks") +@_add_project_path_argument +@click.option("--long", "-l", is_flag=True, default=False, help="Show more details.") +def _list_tasks(project_path: Path, *, long: bool) -> None: + """Load project from PROJECT_PATH and list names of all tasks defined.""" + from cssfinder.cssfproject import CSSFProject + + project = CSSFProject.load_project(project_path) + for name, details in project.tasks.items(): + if long and details.gilbert is not None: + print( + name, + f"mode={details.gilbert.mode.value}", + ( + f"backend={details.gilbert.backend.name}" + if details.gilbert.backend is not None + else "backend=" + ), + ) + continue + print(name) + + +@_project.command("inspect-tasks") +@_add_project_path_argument @click.argument("task_pattern") @click.pass_obj -def _inspect_output(ctx: Ctx, task_pattern: str) -> None: - """Load and display project.""" +def _inspect_tasks(ctx: Ctx, project_path: Path, task_pattern: str) -> None: + """Load project from PROJECT_PATH and inspect configuration of tasks specified by + TASK_PATTERN. + """ import json + import rich + from cssfinder.cssfproject import CSSFProject - if ctx.project_path is None: - reason = "ctx.project_path shall not be None." - raise RuntimeError(reason) + project = CSSFProject.load_project(project_path) + tasks = project.select_tasks([task_pattern]) + + for task in tasks: + if task.gilbert is not None: + content = json.dumps( + {task.task_name: {"gilbert": json.loads(task.gilbert.json())}}, + indent=4, + ) + if ctx.is_rich: + rich.print_json(content) + else: + print(content) + + +@_project.command("inspect-output") +@_add_project_path_argument +@click.argument("task_pattern") +def _inspect_output(project_path: Path, task_pattern: str) -> None: + """Load project from PROJECT_PATH and display output of task specified by + TASK_PATTERN. + """ + import json + + from cssfinder.cssfproject import CSSFProject - project = CSSFProject.load_project(ctx.project_path) + project = CSSFProject.load_project(project_path) tasks = project.select_tasks([task_pattern]) for i, task in enumerate(tasks): corrections = json.loads( - task.output_corrections_file.read_text(encoding="utf-8") + task.output_corrections_file.read_text(encoding="utf-8"), ) print("First correction: ", corrections[0]) print("Middle correction:", corrections[len(corrections) // 2 - 1]) @@ -278,7 +350,7 @@ def _inspect_output(ctx: Ctx, task_pattern: str) -> None: @_project.command("add-gilbert-task") -@click.pass_obj +@_add_project_path_argument @click.option("--name", default=None, help="Name for the task.") @click.option("--mode", default=None, help="Algorithm mode.") @click.option( @@ -308,10 +380,14 @@ def _inspect_output(ctx: Ctx, task_pattern: str) -> None: help="Visibility against white noise, Between 0 and 1.", ) @click.option( - "--max-epochs", default=None, help="Maximal number of algorithm epochs to perform." + "--max-epochs", + default=None, + help="Maximal number of algorithm epochs to perform.", ) @click.option( - "--iters-per-epoch", default=None, help="Number of iterations per single epoch." + "--iters-per-epoch", + default=None, + help="Number of iterations per single epoch.", ) @click.option( "--max-corrections", @@ -335,8 +411,20 @@ def _inspect_output(ctx: Ctx, task_pattern: str) -> None: default=None, help="Path to file containing projection matrix.", ) +@click.option( + "--no-interactive", + is_flag=True, + default=False, + help="Make prompt not interactive at all.", +) +@click.option( + "--override-existing", + is_flag=True, + default=False, + help="Override existing task with the same name.", +) def _add_gilbert_task( # noqa: PLR0913 - ctx: Ctx, + project_path: Path, name: Optional[str], mode: Optional[str], backend_name: Optional[str], @@ -351,6 +439,9 @@ def _add_gilbert_task( # noqa: PLR0913 symmetries: Optional[str], projection: Optional[str], derive: Optional[str], + *, + no_interactive: bool, + override_existing: bool, ) -> None: """Add new gilbert algorithm task. @@ -360,13 +451,9 @@ def _add_gilbert_task( # noqa: PLR0913 from cssfinder.cssfproject import CSSFProject from cssfinder.interactive import GilbertTaskSpec, add_task_gilbert - if ctx.project_path is None: - reason = "ctx.project_path shall not be None." - raise RuntimeError(reason) + project = CSSFProject.load_project(project_path) - project = CSSFProject.load_project(ctx.project_path) - - add_task_gilbert( + add_task_gilbert( # type: ignore[misc] project, GilbertTaskSpec( name or f"task_{len(project.tasks)}", @@ -384,10 +471,13 @@ def _add_gilbert_task( # noqa: PLR0913 projection, derive, ), + no_interactive, + override_existing, ) @_project.command("run-tasks") +@_add_project_path_argument @click.option( "--match", "-m", @@ -412,7 +502,12 @@ def _add_gilbert_task( # noqa: PLR0913 ) @click.pass_obj def _run_tasks( - ctx: Ctx, match_: list[str] | None, *, force_sequential: bool, max_parallel: int + ctx: Ctx, + project_path: Path, + match_: list[str] | None, + *, + force_sequential: bool, + max_parallel: int, ) -> None: """Run tasks from the project.""" from cssfinder.algorithm.gilbert import SaveCorrectionsHookError, SaveStateHookError @@ -426,13 +521,9 @@ def _run_tasks( if not match_: match_ = None - if ctx.project_path is None: - reason = "ctx.project_path shall not be None." - raise RuntimeError(reason) - try: run_project_from( - ctx.project_path, + project_path, match_, is_debug=ctx.is_debug, is_rich=ctx.is_rich, @@ -464,6 +555,7 @@ def _run_tasks( @_project.command("create-task-report") +@_add_project_path_argument @click.argument( "task", ) @@ -498,7 +590,13 @@ def _run_tasks( ) @click.pass_obj def _create_task_report( - ctx: Ctx, task: str, *, html: bool, pdf: bool, json: bool, open_: bool + project_path: Path, + task: str, + *, + html: bool, + pdf: bool, + json: bool, + open_: bool, ) -> None: """Create short report for task. @@ -508,8 +606,6 @@ def _create_task_report( from cssfinder.api import AmbiguousTaskKeyError, create_report_from from cssfinder.reports.renderer import ReportType - assert ctx.project_path is not None - include_report_types = [] if html: @@ -523,12 +619,13 @@ def _create_task_report( if len(include_report_types) == 0: logging.critical( - "No report type was selected therefore nothing will be calculated, exiting." + "No report type was selected therefore nothing will be calculated, " + "exiting.", ) raise SystemExit(0) try: - for report in create_report_from(ctx.project_path, task, include_report_types): + for report in create_report_from(project_path, task, include_report_types): report.save_default() if open_: report.get_default_dest() @@ -547,25 +644,26 @@ def _log_exit(code: int) -> None: @_project.command("create-json-summary") +@_add_project_path_argument @click.argument("task_pattern") -@click.pass_obj -def _create_json_summary(ctx: Ctx, task_pattern: str) -> None: +def _create_json_summary(project_path: Path, task_pattern: str) -> None: """Load and display project.""" import json from cssfinder.api import create_report_from from cssfinder.reports.renderer import ReportType - assert ctx.project_path is not None output = [] for report in create_report_from( - ctx.project_path, task=task_pattern, reports=[ReportType.JSON] + project_path, + task=task_pattern, + reports=[ReportType.JSON], ): content = json.loads(report.content) output.append(content) - dest = Path(ctx.project_path) / "output" / "summary.json" + dest = Path(project_path) / "output" / "summary.json" dest.write_text(json.dumps(output, indent=4)) @@ -599,7 +697,9 @@ def validate_mutually_exclusive( """Return callback checking for mutually exclusive options.""" def _( - ctx: click.Context, param: dict[str, str], value: Optional[str] # noqa: ARG001 + ctx: click.Context, + param: dict[str, str], # noqa: ARG001 + value: Optional[str], ) -> Optional[str]: if value is not None and ctx.params.get(other) is not None: msg = f"{this!r} and {other!r} options are mutually exclusive." @@ -669,17 +769,20 @@ def _examples_clone( except ProjectFileNotFoundError as exc: logging.debug(traceback.format_exc()) logging.critical( - "Sorry but example is broken. (%s)", exc.__class__.__qualname__ + "Sorry but example is broken. (%s)", + exc.__class__.__qualname__, ) raise SystemExit(ExitCode.BROKEN_EXAMPLE) from exc rich.print( f"Found example {example.name!r}, {project.meta.author!r}, " - f"{example.get_sha256().hexdigest()[:8]!r}" + f"{example.get_sha256().hexdigest()[:8]!r}", ) destination_project_folder = _get_validated_destination( - destination, example, force_overwrite=force_overwrite + destination, + example, + force_overwrite=force_overwrite, ) try: example.clone(destination) @@ -696,7 +799,10 @@ def _examples_clone( def _get_validated_destination( - destination: Path, example: examples.Example, *, force_overwrite: bool + destination: Path, + example: examples.Example, + *, + force_overwrite: bool, ) -> Path: from cssfinder.enums import ExitCode diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 00d8fda..f24cfed 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -180,6 +180,16 @@ def load_project(cls, file_or_directory: str | Path) -> Self: msg = f"Unknown project format {project_path.suffix} of project {project_path}" raise FileNotFoundError(msg) + @staticmethod + def is_project_path(file_or_directory: Path) -> bool: + """Check if path points to CSSFinder project file or project directory.""" + try: + project_file_path(file_or_directory) + except FileNotFoundError: + return False + else: + return True + @classmethod def _load_json_project(cls, project_path: Path) -> Self: logging.debug("Resolved project path to %r", project_path.as_posix()) @@ -190,21 +200,21 @@ def _load_json_project(cls, project_path: Path) -> Self: raise ProjectFileNotFoundError(error_message) from exc try: - content = jsonref.loads(content) + decoded_content = jsonref.loads(content) except json.decoder.JSONDecodeError as exc: raise MalformedProjectFileError(exc.msg, exc.doc, exc.pos) from exc - if not isinstance(content, dict): + if not isinstance(decoded_content, dict): logging.critical("Content of cssfproject.json file is not a dictionary.") - raise InvalidCSSFProjectContentError(content) + raise InvalidCSSFProjectContentError(decoded_content) - project = cls(**content, project_path=project_path) - return project + return cls(**decoded_content, project_path=project_path) @classmethod def _load_py_cssfproject(cls, project_path: Path) -> Self: spec = importlib.util.spec_from_file_location( - project_path.name[:-3], project_path.as_posix() + project_path.name[:-3], + project_path.as_posix(), ) if spec is None or spec.loader is None: msg = f"Failed to load project file {project_path}" @@ -228,7 +238,6 @@ def _load_py_cssfproject(cls, project_path: Path) -> Self: f"CSSFProject object.\nFrom {project_path}." ) - assert isinstance(project_object, cls) return project_object def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: @@ -306,7 +315,8 @@ def project_directory(self) -> Path: """Path to directory containing `cssfproject.json` file.""" if self._project is None: raise NotBoundToProjectError( - self, "Access to 'project_directory' property." + self, + "Access to 'project_directory' property.", ) return self.project.project_directory @@ -315,7 +325,8 @@ def project_output_directory(self) -> Path: """Path to output directory for this project.""" if self._project is None: raise NotBoundToProjectError( - self, "Access to 'project_output_directory' property." + self, + "Access to 'project_output_directory' property.", ) return self.project.project_output_directory @@ -332,7 +343,7 @@ class NotBoundToProjectError(Exception): def __init__(self, ob: Any, context_msg: str) -> None: super().__init__( f"Attempted to use unbound object {ob} in context requiring it to be " - f"bound. ({context_msg})" + f"bound. ({context_msg})", ) @@ -385,7 +396,8 @@ def task_output_directory(self) -> Path: """Path to output directory of task.""" if self._task_name is None: raise NotBoundToTaskError( - self, "Access to 'task_output_directory' property." + self, + "Access to 'task_output_directory' property.", ) return self.project.project_output_directory / self.task_name @@ -518,14 +530,18 @@ def bind( ) -> None: """Evaluate dynamic path expressions.""" super().bind(project, task_name, task) - assert isinstance(self.state, State) + if not isinstance(self.state, State): + msg = "State field must be of State type." + raise TypeError(msg) self.state.bind(project, task_name, task) self.get_resources().bind(project, task_name, task) def get_state(self) -> State: """Return initial state information.""" - assert isinstance(self.state, State) + if not isinstance(self.state, State): + msg = "State field must be of State type." + raise TypeError(msg) return self.state @@ -726,7 +742,7 @@ def bind( project=project, task_name=task_name, task=task, - ) + ), ) .expanduser() .resolve() @@ -743,7 +759,7 @@ def bind( project=project, task_name=task_name, task=task, - ) + ), ) .expanduser() .resolve() diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py index 7434e8b..0145b57 100644 --- a/cssfinder/interactive.py +++ b/cssfinder/interactive.py @@ -114,7 +114,11 @@ def _load_default_name_from_git() -> str: default_name = getpass.getuser() try: - retval = subprocess.run(["git", "config", "user.name"], capture_output=True) + retval = subprocess.run( + ["git", "config", "user.name"], # noqa: S603, S607 + capture_output=True, + check=False, + ) if retval.returncode == 0: default_name = retval.stdout.decode("utf-8").strip() @@ -128,7 +132,11 @@ def _load_default_email_from_git() -> EmailStr: default_email = EmailStr("unknown@unknown.com") try: - retval = subprocess.run(["git", "config", "user.email"], capture_output=True) + retval = subprocess.run( + ["git", "config", "user.email"], # noqa: S603, S607 + capture_output=True, + check=False, + ) if retval.returncode == 0: default_email = EmailStr(retval.stdout.decode("utf-8").strip()) @@ -176,7 +184,7 @@ def get_project_fields_with_pytermgui( message = f"[210 bold]{e}" -def _get_project_fields_with_pytermgui( # noqa: PLR0913 +def _get_project_fields_with_pytermgui( default_author_name: str, default_author_email: str, default_project_name: str, @@ -282,6 +290,9 @@ def to_task(self) -> Task: def add_task_gilbert( project: CSSFProject, spec: GilbertTaskSpec, + *, + no_interactive: bool, + override_existing: bool, ) -> None: """Add task to project and save it in place.""" while True: @@ -290,10 +301,16 @@ def add_task_gilbert( break except (ValueError, TypeError, ValidationError, KeyError): + if no_interactive: + raise spec = get_gilbert_task_fields_with_pytermgui(spec) - if spec.name in project.tasks and ( - input("Task already exists, override? (y/n) ").casefold() != "Y".casefold() + if ( + override_existing is False + and spec.name in project.tasks + and ( + input("Task already exists, override? (y/n) ").casefold() != "Y".casefold() + ) ): print("Aborted.") raise SystemExit(1) @@ -321,7 +338,8 @@ def _style_and_break_lines(self) -> list[str]: def get_gilbert_task_fields_with_pytermgui( - spec: GilbertTaskSpec, message: Optional[str] = None + spec: GilbertTaskSpec, + message: Optional[str] = None, ) -> GilbertTaskSpec: """Create temporary TUI prompt for entering task configuration.""" is_interrupted: bool = True diff --git a/docs/Changelog.md b/docs/Changelog.md new file mode 100644 index 0000000..fdb94e7 --- /dev/null +++ b/docs/Changelog.md @@ -0,0 +1 @@ +{% include 'CHANGELOG.md' %} diff --git a/docs/LICENSE.md b/docs/LICENSE.md new file mode 100644 index 0000000..1f9b5b8 --- /dev/null +++ b/docs/LICENSE.md @@ -0,0 +1,3 @@ +# License + +{% include 'LICENSE.md' %} diff --git a/docs/README.md b/docs/README.md new file mode 100644 index 0000000..b968934 --- /dev/null +++ b/docs/README.md @@ -0,0 +1 @@ +{% include 'README.md' %} diff --git a/docs/css/extra.css b/docs/css/extra.css new file mode 100644 index 0000000..0a56e5c --- /dev/null +++ b/docs/css/extra.css @@ -0,0 +1,3 @@ +.mermaid { + text-align: center; +} diff --git a/docs/generate_reference_pages.py b/docs/generate_reference_pages.py new file mode 100644 index 0000000..66eab70 --- /dev/null +++ b/docs/generate_reference_pages.py @@ -0,0 +1,35 @@ +"""Generate the code reference pages and navigation.""" + +from __future__ import annotations + +from pathlib import Path + +import mkdocs_gen_files + +nav = mkdocs_gen_files.Nav() # type: ignore + +for path in sorted(Path("cssfinder").rglob("*.py")): + module_path = path.relative_to(".").with_suffix("") + doc_path = path.relative_to(".").with_suffix(".md") + full_doc_path = Path("reference", doc_path) + + parts = tuple(module_path.parts) + + if "examples" in module_path.as_posix(): + continue + + if parts[-1] == "__init__": + parts = parts[:-1] + elif parts[-1] == "__main__": + continue + + nav[parts] = doc_path.as_posix() + + with mkdocs_gen_files.open(full_doc_path, "w") as fd: + ident = ".".join(parts) + fd.write(f"::: {ident}") + + mkdocs_gen_files.set_edit_path(full_doc_path, path) + +with mkdocs_gen_files.open("reference/SUMMARY.md", "w") as nav_file: # + nav_file.writelines(nav.build_literate_nav()) # diff --git a/docs/images/logo.png b/docs/images/logo.png new file mode 100644 index 0000000000000000000000000000000000000000..007c38d25e4af4b266d20afc6079a9c38d2fdda2 GIT binary patch literal 176074 zcmafbc|6o#`0tr97)u$HHH^LN5-MSY%3jtKA!Xl6l4ZtyNwzFAm6Rg; 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index 0000000..e405e08 --- /dev/null +++ b/docs/macros/main.py @@ -0,0 +1,26 @@ +from __future__ import annotations + +import os + +from mkdocs_macros.plugin import MacrosPlugin + + +def define_env(env: MacrosPlugin) -> None: + """This is the hook for defining variables, macros and filters. + + - variables: the dictionary that contains the environment variables + - macro: a decorator function, to declare a macro. + + """ + + @env.macro + def include_file(filename, start_line=0, end_line=None): # type: ignore[no-untyped-def] + """Include a file, optionally indicating start_line and end_line (start counting + from 0) The path is relative to the top directory of the documentation + project. + """ + full_filename = os.path.join(env.project_dir, filename) + with open(full_filename) as f: + lines = f.readlines() + line_range = lines[start_line:end_line] + return "".join(line_range) diff --git a/docs/ruff.toml b/docs/ruff.toml new file mode 100644 index 0000000..79344dc --- /dev/null +++ b/docs/ruff.toml @@ -0,0 +1,6 @@ +[lint] +ignore = [ + "S101", # Assertions are OK in test code. + "N802", # Project names are used as test names thus causing conflicts with this rule. + "INP001", # Ignore implicit namespaces. +] diff --git a/docs/usage/00_installation_guide.md b/docs/usage/00_installation_guide.md new file mode 100644 index 0000000..96025dd --- /dev/null +++ b/docs/usage/00_installation_guide.md @@ -0,0 +1 @@ +# Installation Guide diff --git a/docs/usage/01_quick_start.md b/docs/usage/01_quick_start.md new file mode 100644 index 0000000..7e22f2f --- /dev/null +++ b/docs/usage/01_quick_start.md @@ -0,0 +1,325 @@ +# Quick Start Guide + +!!! tip "`cssfinder` installation" + + This guide will help you get started with the `cssfinder` library. Before you + begin, make sure you have `cssfinder` installed. If you haven't installed it + yet, you can do so by following the instructions on the + [official website](https://github.com/Argmaster/cssfinder#installation). + +## Example #1 + +!!! warning "Prerequisites" + + This example relies on `cssfinder_backend_numpy`, please install it before continuing, + to avoid problems with running the example. + +=== "Linux - bash" + + ```bash + pip install cssfinder[numpy] + ``` + +=== "Windows - powershell" + + ```powershell + cssfinder examples list + ``` + +### Clone project + +CSSFinder comes with a set of examples which can be used to get familiar with +the library. To list all available examples, use following command: + +=== "Linux - bash" + + ```bash + cssfinder examples list + ``` + +=== "Windows - powershell" + + ```powershell + cssfinder examples list + ``` + +Output should look similar to this: + +![image](https://github.com/Argmaster/CSSFinder/assets/56170852/4c7fee71-8dae-4808-8e89-f10f45ed5363) + +We will use `5qubits_json` example in this tutorial. To clone this example to +current working directory, use following command: + +=== "Linux - bash" + + ```bash + cssfinder clone-example 5qubits_json + ``` + +=== "Windows - powershell" + + ```powershell + cssfinder clone-example 5qubits_json + ``` + +Command output on Linux should look similar to this: + +```log +Found example 'e5qubits_json', 'Krzysztof Wiśniewski; Marcin Wieśniak', 'c317ef12' +Cloned example to '/home/argmaster/dev/repos/cssfinder' +``` + +As result, you should find that `5qubits_json` directory have been created in +your current working directory. This directory contains project configuration +files which describe tasks to execute. Configuration also specifies how tasks +should be run. + +Let's check it by listing content of `5qubits_json` directory: + +=== "Linux - bash" + + ```bash + ls -la + ``` + + Ouput should look similar to this: + + ```log + total 16 + drwxrwxr-x 4 argmaster argmaster 4096 Apr 15 20:47 . + drwxrwxr-x 14 argmaster argmaster 4096 Apr 15 20:47 .. + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 20:47 5qubits_json + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 20:47 log + ``` + +=== "Windows - powershell" + + ```powershell + ls + ``` + + Ouput should look similar to this: + + ```log + total 16 + drwxrwxr-x 4 argmaster argmaster 4096 Apr 15 20:47 . + drwxrwxr-x 14 argmaster argmaster 4096 Apr 15 20:47 .. + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 20:47 5qubits_json + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 20:47 log + ``` + +### Inspect project + +To check contents of the you can use following command: + +=== "Linux - bash" + + ```bash + cssfinder project list-tasks -l ./5qubits_json/ + ``` + +=== "Windows - powershell" + + ```bash + cssfinder project list-tasks -l ./5qubits_json/ + ``` + +Output should look similar to this: + +```log +main mode=FSnQd backend=numpy +test_fsnqd_5qubits mode=FSnQd backend=numpy +``` + +Output shows that there are two tasks defined within the project. You can get +more information about tasks using following command: + +=== "Linux - bash" + + ```bash + cssfinder project inspect-tasks ./5qubits_json/ main + ``` + +=== "Windows - powershell" + + ```bash + cssfinder project inspect-tasks ./5qubits_json/ main + ``` + +Output should look similar to this: + +```json +{ + "main": { + "gilbert": { + "mode": "FSnQd", + "backend": { + "name": "numpy", + "precision": "single" + }, + "state": { + "file": "/home/argmaster/dev/repos/cssfinder/guide/5qubits_json/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 2000, + "max_corrections": 1000 + }, + "resources": { + "symmetries": null, + "projection": null + } + } + } +} +``` + +`"main"` is a task utilizing gilbert algorithm. It uses `numpy` backend with +`single` precision floating point numbers (32-bit). Path to matrix file is +expands to +`"/home/argmaster/dev/repos/cssfinder/guide/5qubits_json/5qubits_in.mtx"` on PC +of the author of this tutorial. You should see path to `5qubits_in.mtx` file in +your output too, likely preceded by different path. + +### Run tasks + +Now we can proceed with running tasks defined within the project. That can be +achieved with following command: + +=== "Linux - bash" + + ```bash + cssfinder project run-tasks ./5qubits_json/ -m main + ``` + +=== "Windows - powershell" + + ```bash + cssfinder project run-tasks ./5qubits_json/ -m main + ``` + +This command will run task called `"main"`, which may take something in between +of few seconds and few minutes, depending on your hardware. On AMD Ryzen 9 +7950X it takes approximately 30 seconds. + +After the task is finished, we can check it output directory was created: + +=== "Linux - bash" + + ```bash + ls -la ./5qubits_json/ + ``` + + As you can see `output` directory was indeed created: + + ``` + total 20 + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 4 argmaster argmaster 4096 Apr 15 20:47 .. + -rw-rw-r-- 1 argmaster argmaster 1192 Apr 15 20:47 5qubits_in.mtx + -rw-rw-r-- 1 argmaster argmaster 1819 Apr 15 20:47 cssfproject.json + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 output + ``` + +=== "Windows - powershell" + + ```bash + ls ./5qubits_json/ + ``` + + As you can see `output` directory was indeed created: + + ``` + total 20 + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 4 argmaster argmaster 4096 Apr 15 20:47 .. + -rw-rw-r-- 1 argmaster argmaster 1192 Apr 15 20:47 5qubits_in.mtx + -rw-rw-r-- 1 argmaster argmaster 1819 Apr 15 20:47 cssfproject.json + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 output + ``` + +Now we can check contents of the `output` directory: + +=== "Linux - bash" + + ```bash + ls -la ./5qubits_json/output/ + ``` + + Within `output` directory you should find `main` directory (name will match + name of the task): + + ```log + total 12 + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 .. + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 22:20 main + ``` + +=== "Windows - powershell" + + ```bash + ls ./5qubits_json/output/ + ``` + + Within `output` directory you should find `main` directory (name will match + name of the task): + + ```log + total 12 + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 .. + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 22:20 main + ``` + +Let's now inspect contents of the `main` directory: + +=== "Linux - bash" + + ```bash + ls -la ./5qubits_json/output/main + ``` + + Within `main` directory you should find `corrections.json` file and `state.mtx` + files. + + ```log + total 92 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 .. + -rw-rw-r-- 1 argmaster argmaster 34334 Apr 15 22:21 corrections.json + -rwxrwxr-x 1 argmaster argmaster 48176 Apr 15 22:21 state.mtx + ``` + +=== "Windows - powershell" + + ```bash + ls ./5qubits_json/output/main + ``` + + Within `main` directory you should find `corrections.json` file and `state.mtx` + files. + + ```log + total 92 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 15 22:20 . + drwxrwxr-x 3 argmaster argmaster 4096 Apr 15 22:20 .. + -rw-rw-r-- 1 argmaster argmaster 34334 Apr 15 22:21 corrections.json + -rwxrwxr-x 1 argmaster argmaster 48176 Apr 15 22:21 state.mtx + ``` + +Unfortunately contents of `corrections.json` and `state.mtx` files are too +large to be included in this tutorial. + +Now depending on you needs you can proceed with interpretation of those files +with use of different software or use CSSFinder to generate report for you. + +## Report generation + +!!! warning "Continuation to Example #1" + + This section will be natural continuation to `Example #1` section and will + assume that reader have successfully followed instructions from there. diff --git a/mkdocs.yaml b/mkdocs.yaml new file mode 100644 index 0000000..560e448 --- /dev/null +++ b/mkdocs.yaml @@ -0,0 +1,123 @@ +site_name: CSSFinder Documentation +theme: + language: en + + logo: images/logo_white.png + favicon: images/logo.png + + name: material + + palette: + - scheme: default + primary: green + accent: green + toggle: + icon: material/weather-night + name: Switch to dark mode + + - scheme: slate + primary: green + accent: green + toggle: + icon: material/weather-sunny + name: Switch to light mode + + features: + - content.action.edit + - navigation.instant + - navigation.tracking + - navigation.sections + - navigation.top + - toc.follow + - search.suggest + - search.highlight + - search.share + - content.code.copy + - content.tabs.link + + icon: + repo: fontawesome/brands/github + +use_directory_urls: false +repo_url: https://github.com/Argmaster/cssfinder +repo_name: Argmaster/cssfinder +edit_uri: edit/main/docs/ + +# https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/ +markdown_extensions: + - pymdownx.tasklist: + custom_checkbox: true + - md_in_html + - toc: + permalink: true + permalink_title: Anchor link to this section for reference + # https://squidfunk.github.io/mkdocs-material/reference/code-blocks + - pymdownx.highlight: + anchor_linenums: true + line_spans: __span + pygments_lang_class: true + - pymdownx.inlinehilite + - pymdownx.snippets + - pymdownx.superfences: + custom_fences: + - name: mermaid + class: mermaid + format: !!python/name:pymdownx.superfences.fence_code_format + - admonition + - pymdownx.details + - pymdownx.tabbed: + alternate_style: true + +plugins: + - search: + lang: en + # https://squidfunk.github.io/mkdocs-material/setup/building-for-offline-usage/ + - offline + # https://mkdocs-macros-plugin.readthedocs.io/en/latest/ + - macros: + include_dir: . + module_name: "./docs/macros/main" + # https://mkdocstrings.github.io/ + - mkdocstrings: + handlers: + # https://mkdocstrings.github.io/python/ + python: + # https://mkdocstrings.github.io/python/usage/configuration/docstrings/ + options: + # https://mkdocstrings.github.io/python/usage/configuration/general/ + docstring_style: numpy + show_bases: true + allow_inspection: true + heading_level: 2 + show_root_heading: true + show_root_full_path: false + show_root_members_full_path: false + members_order: source + show_root_toc_entry: true + show_symbol_type_heading: true + show_symbol_type_toc: true + filters: + - "!^_" + - "^__" + show_signature: true + separate_signature: true + show_signature_annotations: true + group_by_category: true + # https://oprypin.github.io/mkdocs-gen-files/ + - gen-files: + scripts: + - docs/generate_reference_pages.py + # https://pypi.org/project/mkdocs-literate-nav/ + - literate-nav: + nav_file: SUMMARY.md + +extra_css: + - css/extra.css + +extra_javascript: + - js/extra.js + +extra: + version: + # https://squidfunk.github.io/mkdocs-material/setup/setting-up-versioning/ + provider: mike diff --git a/pyproject.toml b/pyproject.toml index 3e93316..30b7014 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -75,11 +75,11 @@ cssf = "cssfinder.cli:main" [tool.poe.tasks] release = { script = "scripts.release:main" } install-hooks = [ - { cmd = "poetry install --sync --no-ansi" }, + { cmd = "poetry install --sync --with=docs --no-ansi" }, { cmd = "poetry run pre-commit install --install-hooks --overwrite" }, ] run-hooks = [ - { cmd = "poetry install --sync --no-ansi" }, + { cmd = "poetry install --sync --with=docs --no-ansi" }, { cmd = "pre-commit run --all-files -v" }, ] build = [ @@ -90,7 +90,7 @@ gen-numpy-impl = { script = "scripts.gen_numpy_impl:main" } test-system = { cmd = "pytest test/test_system -v --cov" } test-reports = { cmd = "pytest test/test_reports -v --cov" } type-check = [ - { cmd = "poetry install --sync --no-ansi" }, + { cmd = "poetry install --sync --with=docs --no-ansi" }, { cmd = "mypy cssfinder test scripts" }, ] @@ -260,492 +260,45 @@ error_summary = true show_absolute_path = true [tool.ruff] -extend-select = [ - "A001", - "A002", - "A003", - "ANN001", - "ANN002", - "ANN003", - "ANN201", - "ANN202", - "ANN204", - "ANN205", - "ANN206", - "ARG001", - "ARG002", - "ARG003", - "ARG004", - "ARG005", - "B002", - "B003", - "B004", - "B005", - "B006", - "B007", - "B008", - "B009", - "B010", - "B011", - "B012", - "B013", - "B014", - "B015", - "B016", - "B017", - "B018", - "B019", - "B020", - "B021", - "B022", - "B023", - "B024", - "B025", - "B026", - "B027", - "B029", - "B032", - "B904", - "B905", - "BLE001", - "C400", - "C401", - "C402", - "C403", - "C404", - "C405", - "C406", - "C408", - "C409", - "C410", - "C411", - "C413", - "C414", - "C415", - "C416", - "C417", - "C901", - "COM818", - "COM819", - "D100", - "D101", - "D102", - "D103", - "D104", - "D105", - "D106", - # "D107", - "D200", - "D201", - "D202", - # "D203", - "D204", - # "D205", - "D206", - "D207", - "D208", - "D209", - "D210", - "D211", - "D212", - # "D213", - "D214", - "D215", - "D300", - "D301", - "D400", - "D401", - "D402", - "D403", - "D404", - "D405", - "D406", - "D407", - "D408", - "D409", - "D410", - "D411", - "D412", - "D413", - "D414", - "D415", - "D416", - "D417", - "D418", - "D419", - "DJ001", - "DJ008", - "DJ013", - "DTZ001", - "DTZ002", - "DTZ003", - "DTZ004", - "DTZ005", - "DTZ006", - "DTZ007", - "DTZ011", - "DTZ012", - "E101", - "E401", - "E402", - "E501", - "E701", - "E702", - "E703", - "E711", - "E712", - "E713", - "E714", - "E721", - "E722", - "E731", - "E741", - "E742", - "E743", - "E902", - "E999", - "EM101", - "EM102", - "EM103", - "ERA001", - "EXE001", - "EXE002", - "EXE003", - "EXE004", - "EXE005", - "F401", - "F402", - "F403", - "F404", - "F405", - "F406", - "F407", - "F501", - "F502", - "F503", - "F504", - "F505", - "F506", - "F507", - "F508", - "F509", - "F521", - "F522", - "F523", - "F524", - "F525", - "F541", - "F601", - "F602", - "F621", - "F622", - "F631", - "F632", - "F633", - "F634", - "F701", - "F702", - "F704", - "F706", - "F707", - "F722", - "F811", - "F821", - "F822", - "F823", - "F841", - "F842", - "F901", - "FBT001", - "FBT002", - "FBT003", - "G001", - "G002", - "G003", - "G004", - "G010", - "G101", - "G201", - "G202", - "I001", - "I002", - "ICN001", - "INP001", - "ISC001", - "ISC002", - "ISC003", - "N801", - "N802", - "N803", - "N804", - "N805", - "N806", - "N807", - "N811", - "N812", - "N813", - "N814", - "N815", - "N816", - "N817", - "N818", - "N999", - "NPY001", - "NPY002", - "PD002", - "PD003", - "PD004", - "PD007", - "PD008", - "PD009", - "PD010", - "PD011", - "PD012", - "PD013", - "PD015", - "PD901", - "PGH001", - "PGH002", - "PGH003", - "PGH004", - "PIE790", - "PIE794", - "PIE796", - "PIE800", - "PIE804", - "PIE807", - "PIE810", - "PLC041", - "PLC0414", - "PLC300", - "PLC3002", - "PLE010", - "PLE0100", - "PLE0101", - "PLE011", - "PLE0117", - "PLE0118", - "PLE060", - "PLE0604", - "PLE0605", - "PLE114", - "PLE1142", - "PLE120", - "PLE1205", - "PLE1206", - "PLE130", - "PLE1307", - "PLE131", - "PLE1310", - "PLE250", - "PLE2502", - "PLR013", - "PLR0133", - "PLR020", - "PLR0206", - "PLR040", - "PLR0402", - "PLR091", - "PLR0911", - "PLR0912", - "PLR0913", - "PLR0915", - "PLR170", - "PLR1701", - "PLR172", - "PLR1722", - "PLR200", - "PLR2004", - "PLW012", - "PLW0120", - "PLW060", - "PLW0602", - "PLW290", - "PLW2901", - "PT001", - "PT002", - "PT003", - "PT004", - "PT005", - "PT006", - "PT007", - "PT008", - "PT009", - "PT010", - "PT011", - "PT012", - "PT013", - "PT015", - "PT016", - "PT017", - "PT018", - "PT019", - "PT020", - "PT021", - "PT022", - "PT023", - "PT024", - "PT025", - "PT026", - "PTH100", - "PTH101", - "PTH102", - "PTH103", - "PTH104", - "PTH105", - "PTH106", - "PTH107", - "PTH108", - "PTH109", - "PTH110", - "PTH111", - "PTH112", - "PTH113", - "PTH114", - "PTH115", - "PTH116", - "PTH117", - "PTH118", - "PTH119", - "PTH120", - "PTH121", - "PTH122", - "PTH123", - "PTH124", - "PYI001", - "PYI007", - "PYI008", - "Q000", - "Q001", - "Q002", - "Q003", - "RET501", - "RET502", - "RET503", - # "RET504", - "RET505", - "RET506", - "RET507", - "RET508", - "RSE102", - "RUF001", - "RUF002", - "RUF003", - # "RUF004", - "RUF005", - "RUF006", - "RUF100", - "S102", - "S103", - "S104", - "S105", - "S106", - "S107", - "S108", - "S110", - "S112", - "S113", - "S324", - "S501", - "S506", - "S508", - "S509", - "S608", - "S612", - "S701", - "SIM101", - "SIM102", - "SIM103", - "SIM105", - "SIM107", - "SIM108", - "SIM109", - "SIM110", - "SIM112", - "SIM114", - "SIM115", - "SIM116", - "SIM117", - "SIM118", - "SIM201", - "SIM202", - "SIM208", - "SIM210", - "SIM211", - "SIM212", - "SIM220", - "SIM221", - "SIM222", - "SIM223", - "SIM300", - "SIM401", - "SLF001", - "T100", - "T203", - "TCH001", - "TCH002", - "TCH003", - "TCH004", - "TCH005", - "TID251", - "TID252", - "TRY002", - "TRY003", - "TRY004", - "TRY200", - "TRY201", - "TRY300", - "TRY301", - "TRY400", - "TRY401", - "UP001", - "UP003", - "UP004", - "UP005", - # "UP006", - # "UP007", # breaks compatibility with Python <3.10 - "UP008", - "UP009", - "UP010", - "UP011", - "UP012", - "UP013", - "UP014", - "UP015", - "UP017", - "UP018", - "UP019", - "UP020", - "UP021", - "UP022", - "UP023", - "UP024", - "UP025", - "UP026", - "UP027", - "UP028", - "UP029", - "UP030", - "UP031", - "UP032", - "UP033", - "UP034", - "UP035", - "UP036", - "UP037", - "W292", - "W505", - "W605", - "YTT101", - "YTT102", - "YTT103", - "YTT201", - "YTT202", - "YTT203", - "YTT204", - "YTT301", - "YTT302", - "YTT303", -] show-fixes = true target-version = "py38" +src = ["src", "test"] + +[tool.ruff.lint] +select = ["ALL"] +ignore = [ + "ANN401", + "ANN101", + "ANN102", + "D203", + "D205", + "D213", + "UP007", + "UP006", + "TCH001", + "D105", # Adding docstrings in all magic methods doesn't make sense, as usually they are just boilerplate to support operators. + "FIX002", + "D107", # Adding docstring to __init__ doesn't make sense when class already has its docstring. + "T201", # print() function is extensively used to interact with user. +] + +[tool.ruff.lint.pylint] +max-args = 8 + +[tool.ruff.lint.pyupgrade] +# Preserve types, even if a file imports `from __future__ import annotations`. +keep-runtime-typing = true + +[tool.ruff.lint.isort] +required-imports = ["from __future__ import annotations"] + +[tool.ruff.lint.flake8-tidy-imports] +# Disallow all relative imports. +ban-relative-imports = "all" + +[tool.ruff.lint.flake8-type-checking] +runtime-evaluated-base-classes = [ + "pydantic.BaseModel", + "FrozenGeneralModel", + "BaseModel", +] From 001a672fbd1c25f3934fcccfeb96d3d4bd601fe5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Apr 2024 23:10:53 +0200 Subject: [PATCH 212/227] Bump pillow from 9.4.0 to 10.3.0 (#91) --- poetry.lock | 164 +++++++++++++++++++++++++--------------------------- 1 file changed, 80 insertions(+), 84 deletions(-) diff --git a/poetry.lock b/poetry.lock index f616ac8..c342224 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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42.0.4.
    Commits

    [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=cryptography&package-manager=pip&previous-version=41.0.3&new-version=42.0.4)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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    Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 71 ++++++++++++++++++++++++++++++----------------------- 1 file changed, 40 insertions(+), 31 deletions(-) diff --git a/poetry.lock b/poetry.lock index 64e6e4d..37ddb76 100644 --- a/poetry.lock +++ b/poetry.lock @@ -630,47 +630,56 @@ files = [ [[package]] name = "cryptography" -version = "41.0.3" +version = "42.0.4" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." optional = false python-versions = ">=3.7" files = [ - {file = "cryptography-41.0.3-cp37-abi3-macosx_10_12_universal2.whl", hash = "sha256:652627a055cb52a84f8c448185922241dd5217443ca194d5739b44612c5e6507"}, - {file = "cryptography-41.0.3-cp37-abi3-macosx_10_12_x86_64.whl", hash = "sha256:8f09daa483aedea50d249ef98ed500569841d6498aa9c9f4b0531b9964658922"}, - {file = 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"pytest-benchmark", "pytest-cov", "pytest-xdist"] +test = ["certifi", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-xdist"] test-randomorder = ["pytest-randomly"] [[package]] From ef2708ce7c850066e194bfdcf76159db391b0c85 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Apr 2024 23:11:31 +0200 Subject: [PATCH 215/227] Bump click from 8.1.3 to 8.1.7 (#95) From 5dbb888d4d5902ca5b97ede2b732b0c5301786ce Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 01:45:14 +0200 Subject: [PATCH 216/227] Remove isort from pre-commit config --- .pre-commit-config.yaml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 81bfd79..a77a72c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -34,17 +34,6 @@ repos: hooks: - id: prettier - - repo: https://github.com/timothycrosley/isort - rev: "5.12.0" - hooks: - - id: isort - - - repo: https://github.com/timothycrosley/isort - rev: "5.12.0" - hooks: - - id: isort - args: [-a, "from __future__ import annotations", cssfinder] - - repo: https://github.com/ambv/black rev: "23.3.0" hooks: From 9a7627a02ae97c165ce156666bb201171034f5fe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 01:45:33 +0200 Subject: [PATCH 217/227] Add project guide and extend project command line --- README.md | 208 +-------- cssfinder/api.py | 2 +- cssfinder/cli.py | 154 ++++++- cssfinder/cssfproject.py | 36 +- cssfinder/examples/5qubits_py/cssfproject.py | 3 +- cssfinder/interactive.py | 13 +- cssfinder/jinja2_tools.py | 13 + cssfinder/reports/html.py | 8 +- .../templates/python_base_project.pyjinja2 | 62 +++ docs/development/00_setup.md | 42 ++ docs/development/01_code_quality.md | 84 ++++ docs/development/02_packaging.md | 36 ++ docs/development/03_profiling.md | 13 + docs/usage/00_installation_guide.md | 168 ++++++++ docs/usage/02_project_guide.md | 395 ++++++++++++++++++ 15 files changed, 994 insertions(+), 243 deletions(-) create mode 100644 cssfinder/jinja2_tools.py create mode 100644 cssfinder/templates/python_base_project.pyjinja2 create mode 100644 docs/development/00_setup.md create mode 100644 docs/development/01_code_quality.md create mode 100644 docs/development/02_packaging.md create mode 100644 docs/development/03_profiling.md create mode 100644 docs/usage/02_project_guide.md diff --git a/README.md b/README.md index 9dafc7d..e967fd4 100644 --- a/README.md +++ b/README.md @@ -67,33 +67,8 @@ pip install cssfinder[numpy] pip install cssfinder[rust] ``` -You don't need both, one will be perfectly fine. Alternatively, you may find -`cssfinder-backend-numpy` and `cssfinder-backend-rust` on PyPI and install them -manually, with exact same effect. Backends are dynamically detected from all -locations from where Python can import modules, thus any valid way of making -backend code reachable for interpreter will work. - -### Development version - -To install development version of CSSFinder, you can use `pip` in terminal: - -``` -pip install git+https://github.com/Argmaster/pygerber -``` - -### For windows users - -CSSFinder can export PDF reports (and other formats too), but it uses -`weasyprint` for that and `weasyprint` relies on `GTK3`. Unfortunately it is -quite hard to get `GTK3` going on windows and `weasyprint` requires it to work. -Therefore you must handle installation yourself. -[Here](https://doc.courtbouillon.org/weasyprint/stable/first_steps.html#windows) -you can find official guidelines from `weasyprint`. -[This repository](https://github.com/tschoonj/GTK-for-Windows-Runtime-Environment-Installer) -may also help. Alternatively you can use WSL to install and run CSSFinder, as -its seamless to do that. - -Its worth mentioning that other formats are not affected by this issue. +For more detailed description of installation process visit CSSFinder +[online documentation](https://argmaster.github.io/cssfinder/latest/usage/00_installation_guide.md). ## Quick start guide @@ -131,179 +106,6 @@ main - CSSFinder is a script for finding closest separ ## Development -This project uses `Python` programming language and requires at least python -`3.8` for development and distribution. Development dependencies -[`poetry`](https://pypi.org/project/poetry/) for managing dependencies and -distribution building. It is necessary to perform any operations in development -environment. - -To install poetry globally (preferred way) use `pip` in terminal: - -``` -pip install poetry -``` - -Then use - -``` -poetry shell -``` - -to spawn new shell with virtual environment activated. Virtual environment will -be indicated by terminal prompt prefix `(cssfinder-py3.10)`, version indicated -in prefix depends on used version of Python interpreter. It is not necessary to -use Python 3.10, however at least 3.8 is required. - -Within shell with active virtual environment use: - -``` -poetry install --sync -``` - -To install all dependencies. Every time you perform a `git pull` or change a -branch, you should call this command to make sure you have the correct versions -of dependencies. - -Last line should contain something like: - -``` -Installing the current project: cssfinder (0.1.0) -``` - -If no error messages are shown, You are good to go. - -## Packaging - -A Python Wheel is a built package format for Python that can be easily -installed and distributed, containing all the files necessary to install a -module and can be installed with pip with all dependencies automatically -installed too. - -To create wheel of cssfinder use `poe` task in terminal: - -``` -poe build -``` - -![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) - -This will create `dist/` directory with `cssfinder-0.7.0` or alike inside. - -Wheel file can be installed with - -``` -pip install ./dist/cssfinder-0.7.0 -``` - -What you expect is - -``` -Successfully installed cssfinder-0.7.0 -``` - -or rather something like - -``` -Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.7.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 -``` - -But `cssfinder-0.7.0` should be included in this list. - -## Code quality - -To ensure that all code follow same style guidelines and code quality rules, -multiple static analysis tools are used. For simplicity, all of them are -configured as `pre-commit` ([learn about pre-commit](https://pre-commit.com/)) -hooks. Most of them however are listed as development dependencies. - -- `autocopyright`: This hook automatically adds copyright headers to files. It - is used to ensure that all files in the repository have a consistent - copyright notice. - -- `autoflake`: This hook automatically removes unused imports from Python code. - It is used to help keep code clean and maintainable by removing unnecessary - code. - -- `docformatter`: This hook automatically formats docstrings in Python code. It - is used to ensure that docstrings are consistent and easy to read. - -- `prettier`: This hook automatically formats code in a variety of languages, - including JavaScript, HTML, CSS, and Markdown. It is used to ensure that code - is consistently formatted and easy to read. - -- `isort`: This hook automatically sorts Python imports. It is used to ensure - that imports are organized in a consistent and readable way. - -- `black`: This hook automatically formats Python code. It is used to ensure - that code is consistently formatted and easy to read. - -- `check-merge-conflict`: This hook checks for merge conflicts. It is used to - ensure that code changes do not conflict with other changes in the - repository. - -- `check-case-conflict`: This hook checks for case conflicts in file names. It - is used to ensure that file names are consistent and do not cause issues on - case-sensitive file systems. - -- `trailing-whitespace`: This hook checks for trailing whitespace in files. It - is used to ensure that files do not contain unnecessary whitespace. - -- `end-of-file-fixer`: This hook adds a newline to the end of files if one is - missing. It is used to ensure that files end with a newline character. - -- `debug-statements`: This hook checks for the presence of debugging statements - (e.g., print statements) in code. It is used to ensure that code changes do - not contain unnecessary debugging code. - -- `check-added-large-files`: This hook checks for large files that have been - added to the repository. It is used to ensure that large files are not - accidentally committed to the repository. - -- `check-toml`: This hook checks for syntax errors in TOML files. It is used to - ensure that TOML files are well-formed. - -- `mixed-line-ending`: This hook checks for mixed line endings (e.g., a mix of - Windows and Unix line endings) in text files. It is used to ensure that text - files have consistent line endings. - -To run all checks, you must install hooks first with poe - -``` -poe install-hooks -``` - -After you have once used this command, you wont have to use it in this -environment. Then you can use - -``` -poe run-hooks -``` - -To run checks and automatic fixing. Not all issues can be automatically fixed, -some of them will require your intervention. - -Successful hooks run should leave no Failed tasks: - -![run_hooks_output](https://user-images.githubusercontent.com/56170852/223247968-8333e9ee-c0f0-4cce-afe1-a8e7917d9b0a.png) - -Example of failed task: - -![failed_task](https://user-images.githubusercontent.com/56170852/223249222-113a1269-fb3c-4d2c-b2ba-3d26e8ac090a.png) - -Those hooks will be run also while you try to commit anything. If any tasks -fails, no commit will be created, instead you will be expected to fix errors -and add stage fixes. Then you may retry running `git commit`. - -## Profiling - -To run simple profiling, You can use following command: - -``` -python -mcProfile -o "#examples_profile_5qubits_prof.prof" "assets/profiling/5qubits_prof/cssfproject.py" -``` - -Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): - -``` -snakeviz "#examples_profile_5qubits_prof.prof" -``` +For development guidelines please visit +[Development](https://argmaster.github.io/cssfinder/latest/development/00_setup.md) +in CSSFinder online documentation. diff --git a/cssfinder/api.py b/cssfinder/api.py index f4037be..fd7f5ea 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -240,7 +240,7 @@ def create_gilbert( """ state_config = config.get_state() - initial_state = asset_io.load_state(state_config.file) + initial_state = asset_io.load_state(state_config.expanded_file) if state_config.is_predefined_dimensions(): depth = state_config.get_depth() diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 73af16f..67a3a7d 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -28,11 +28,12 @@ import traceback from dataclasses import dataclass from pathlib import Path -from typing import TYPE_CHECKING, Callable, Optional +from typing import TYPE_CHECKING, Callable, Optional, TypeVar import click import cssfinder +from cssfinder.cssfproject import project_file_path if TYPE_CHECKING: from cssfinder import examples @@ -214,23 +215,96 @@ def _print_tree( ) -@main.command("create-new-project") +@main.command("create-new-json-project") @click.option("--author", default=None, help="Author metadata field value.") @click.option("--email", default=None, help="Email metadata field value.") @click.option("--name", default=None, help="Name metadata field value.") @click.option("--description", default=None, help="Description metadata field value.") @click.option("--project-version", default=None, help="Version metadata field value.") -def _project_new( +@click.option( + "--no-interactive", + is_flag=True, + default=False, + help="Make prompt not interactive at all.", +) +@click.option( + "--override-existing", + is_flag=True, + default=False, + help="Override existing project if exists.", +) +def _create_new_json_project( author: Optional[str], email: Optional[str], name: Optional[str], description: Optional[str], project_version: Optional[str], + *, + no_interactive: bool, + override_existing: bool, ) -> None: - """Create new project.""" + """Create new JSON based project directory `` in current working directory.""" from cssfinder.interactive import create_new_project - create_new_project(author, email, name, description, project_version) + project = create_new_project( + author, + email, + name, + description, + project_version, + no_interactive=no_interactive, + override_existing=override_existing, + ) + + serialized = project.json(indent=4, ensure_ascii=False) + project.project_file.write_text(serialized) + + +@main.command("create-new-python-project") +@click.option("--author", default=None, help="Author metadata field value.") +@click.option("--email", default=None, help="Email metadata field value.") +@click.option("--name", default=None, help="Name metadata field value.") +@click.option("--description", default=None, help="Description metadata field value.") +@click.option("--project-version", default=None, help="Version metadata field value.") +@click.option( + "--no-interactive", + is_flag=True, + default=False, + help="Make prompt not interactive at all.", +) +@click.option( + "--override-existing", + is_flag=True, + default=False, + help="Override existing project if exists.", +) +def _create_new_python_project( + author: Optional[str], + email: Optional[str], + name: Optional[str], + description: Optional[str], + project_version: Optional[str], + *, + no_interactive: bool, + override_existing: bool, +) -> None: + """Create new Python based project directory `` in current working + directory. + """ + from cssfinder.interactive import create_new_project + + project = create_new_project( + author, + email, + name, + description, + project_version, + no_interactive=no_interactive, + override_existing=override_existing, + ) + + serialized = project.to_python_project_template() + project.project_file.with_suffix(".py").write_text(serialized) @main.group("project") @@ -238,10 +312,6 @@ def _project() -> None: """Group of commands for interaction with projects.""" -def _add_project_path_argument(function: Callable) -> Callable: - return click.argument("project_path", type=_project_path_validator)(function) - - def _project_path_validator(param: str) -> Path: """Check if provided path is a valid project path.""" from cssfinder.cssfproject import CSSFProject @@ -252,11 +322,33 @@ def _project_path_validator(param: str) -> Path: msg = "Provided path is not a valid project path." raise click.BadParameter(msg) - return project_path + return project_file_path(project_path) + + +def _json_project_path_validator(param: str) -> Path: + """Check if provided path is a valid project path.""" + path = _project_path_validator(param) + if path.suffix != ".json": + msg = "Provided path is not a valid JSON project path." + raise click.BadParameter(msg) + return path + + +CallableT = TypeVar("CallableT", bound=Callable) + + +def _add_project_path_argument( + param_name: str = "project_path", + validator: Callable[[str], Path] = _project_path_validator, +) -> Callable[[CallableT], CallableT]: + def _(function: CallableT) -> CallableT: + return click.argument(param_name, type=validator)(function) + + return _ @_project.command("inspect") -@_add_project_path_argument +@_add_project_path_argument() def _inspect(project_path: Path) -> None: """Load project from PROJECT_PATH and display its contents. @@ -273,7 +365,7 @@ def _inspect(project_path: Path) -> None: @_project.command("list-tasks") -@_add_project_path_argument +@_add_project_path_argument() @click.option("--long", "-l", is_flag=True, default=False, help="Show more details.") def _list_tasks(project_path: Path, *, long: bool) -> None: """Load project from PROJECT_PATH and list names of all tasks defined.""" @@ -296,7 +388,7 @@ def _list_tasks(project_path: Path, *, long: bool) -> None: @_project.command("inspect-tasks") -@_add_project_path_argument +@_add_project_path_argument() @click.argument("task_pattern") @click.pass_obj def _inspect_tasks(ctx: Ctx, project_path: Path, task_pattern: str) -> None: @@ -325,7 +417,7 @@ def _inspect_tasks(ctx: Ctx, project_path: Path, task_pattern: str) -> None: @_project.command("inspect-output") -@_add_project_path_argument +@_add_project_path_argument() @click.argument("task_pattern") def _inspect_output(project_path: Path, task_pattern: str) -> None: """Load project from PROJECT_PATH and display output of task specified by @@ -350,7 +442,7 @@ def _inspect_output(project_path: Path, task_pattern: str) -> None: @_project.command("add-gilbert-task") -@_add_project_path_argument +@_add_project_path_argument() @click.option("--name", default=None, help="Name for the task.") @click.option("--mode", default=None, help="Algorithm mode.") @click.option( @@ -477,7 +569,7 @@ def _add_gilbert_task( # noqa: PLR0913 @_project.command("run-tasks") -@_add_project_path_argument +@_add_project_path_argument() @click.option( "--match", "-m", @@ -555,7 +647,7 @@ def _run_tasks( @_project.command("create-task-report") -@_add_project_path_argument +@_add_project_path_argument() @click.argument( "task", ) @@ -644,7 +736,7 @@ def _log_exit(code: int) -> None: @_project.command("create-json-summary") -@_add_project_path_argument +@_add_project_path_argument() @click.argument("task_pattern") def _create_json_summary(project_path: Path, task_pattern: str) -> None: """Load and display project.""" @@ -667,6 +759,32 @@ def _create_json_summary(project_path: Path, task_pattern: str) -> None: dest.write_text(json.dumps(output, indent=4)) +@_project.command("to-python") +@_add_project_path_argument("json_project_path", _json_project_path_validator) +@click.option("--override-existing", is_flag=True, default=False) +def _to_python(json_project_path: Path, *, override_existing: bool) -> None: + """Load project from JSON_PROJECT_PATH and convert it to Python based project.""" + from cssfinder.cssfproject import CSSFProject + + project = CSSFProject.load_project(json_project_path) + project_file_path = project.project_file.with_suffix(".py") + + if ( + not override_existing + and project_file_path.exists() + and ( + input("`cssfinder.py` already exists, override? (y/n) ").casefold() + != "Y".casefold() + ) + ): + print("Aborted.") + raise SystemExit(1) + + project_file_path.write_text( + project.to_python_project_template(), + ) + + @main.command("list-backends") def _list_backends() -> None: """List available backends.""" diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index f24cfed..e655fa6 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -38,6 +38,7 @@ from cssfinder.base_model import CommonBaseModel from cssfinder.enums import CaseInsensitiveEnum +from cssfinder.jinja2_tools import get_cssfinder_jinja2_environment if TYPE_CHECKING: from typing_extensions import Self @@ -252,6 +253,16 @@ def select_tasks(self, patterns: list[str] | None = None) -> list[Task]: return [self.tasks[k] for k in keys] + def to_python_project_template(self) -> str: + """Convert contents of this project into Python project file.""" + return ( + get_cssfinder_jinja2_environment() + .get_template( + "python_base_project.pyjinja2", + ) + .render(project=self) + ) + class InvalidCSSFProjectContentError(ValueError): """Raised by load_from() when file content is not a dictionary.""" @@ -634,13 +645,6 @@ def bind( if task_name is None or task is None: return - self.file = ( - Path(self.file.format(project=project, task_name=task_name, task=task)) - .expanduser() - .resolve() - .as_posix() - ) - def is_predefined_dimensions(self) -> bool: """Return True when both dimensions are available.""" return self.depth is not None and self.quantity is not None @@ -661,6 +665,24 @@ def get_quantity(self) -> int: raise NoDimensionsError(msg) return self.quantity + @property + def expanded_file(self) -> str: + """Return expanded path to file.""" + if self._project is None: + raise NotBoundToProjectError(self, "Access to 'expanded_file' property.") + return ( + Path( + self.file.format( + project=self.project, + task_name=self.task_name, + task=self.task, + ), + ) + .expanduser() + .resolve() + .as_posix() + ) + class NoDimensionsError(ValueError): """Raised when system dimensions were requested but are not specified in config.""" diff --git a/cssfinder/examples/5qubits_py/cssfproject.py b/cssfinder/examples/5qubits_py/cssfproject.py index bdd6a28..f0f4fff 100644 --- a/cssfinder/examples/5qubits_py/cssfproject.py +++ b/cssfinder/examples/5qubits_py/cssfproject.py @@ -32,8 +32,6 @@ from pathlib import Path -from pydantic import EmailStr - from cssfinder.api import run_project from cssfinder.cssfproject import ( AlgoMode, @@ -47,6 +45,7 @@ State, Task, ) +from pydantic import EmailStr TASKS = [ Task( diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py index 0145b57..51f0fc8 100644 --- a/cssfinder/interactive.py +++ b/cssfinder/interactive.py @@ -52,7 +52,10 @@ def create_new_project( default_name: Optional[str] = None, default_description: Optional[str] = None, default_version_string: Optional[str] = None, -) -> None: + *, + no_interactive: bool, + override_existing: bool, +) -> CSSFProject: """Create new project directory and cssfinder.json file.""" all_set = ( default_author is not None @@ -68,7 +71,7 @@ def create_new_project( description = default_description or " " version_string = default_version_string or "1.0.0" - if all_set: + if all_set or no_interactive: meta = Meta( author=author, email=EmailStr(email), @@ -86,7 +89,7 @@ def create_new_project( ) project_file_path = Path.cwd() / meta.name / "cssfproject.json" - if project_file_path.exists(): + if (not override_existing) and project_file_path.exists(): if ( input("Project already exists, override? (y/n) ").casefold() == "Y".casefold() @@ -99,13 +102,11 @@ def create_new_project( project_file_path.parent.mkdir(0o777, parents=True, exist_ok=True) project_file_path.touch(0o777, exist_ok=True) - project = CSSFProject( + return CSSFProject( meta=meta, tasks=[], project_path=project_file_path.as_posix(), ) - serialized = project.json(indent=4, ensure_ascii=False) - project_file_path.write_text(serialized) def _load_default_name_from_git() -> str: diff --git a/cssfinder/jinja2_tools.py b/cssfinder/jinja2_tools.py new file mode 100644 index 0000000..1ae434a --- /dev/null +++ b/cssfinder/jinja2_tools.py @@ -0,0 +1,13 @@ +"""Tools related to Jinja2 template engine.""" + +from __future__ import annotations + +import jinja2 + + +def get_cssfinder_jinja2_environment() -> jinja2.Environment: + """Get Jinja2 environment with default settings.""" + return jinja2.Environment( + loader=jinja2.PackageLoader("cssfinder"), + autoescape=jinja2.select_autoescape(), + ) diff --git a/cssfinder/reports/html.py b/cssfinder/reports/html.py index 7264d5a..7f8a55f 100644 --- a/cssfinder/reports/html.py +++ b/cssfinder/reports/html.py @@ -24,8 +24,7 @@ from typing import TYPE_CHECKING -import jinja2 - +from cssfinder.jinja2_tools import get_cssfinder_jinja2_environment from cssfinder.reports.renderer import Renderer, Report, ReportType if TYPE_CHECKING: @@ -39,10 +38,7 @@ class HTMLRenderer(Renderer): def __init__(self, props: SlopeProperties, plots: list[Plot], task: Task) -> None: super().__init__(props, plots, task) - self.env = jinja2.Environment( - loader=jinja2.PackageLoader("cssfinder"), - autoescape=jinja2.select_autoescape(), - ) + self.env = get_cssfinder_jinja2_environment() def render(self) -> Report: """Generate report content.""" diff --git a/cssfinder/templates/python_base_project.pyjinja2 b/cssfinder/templates/python_base_project.pyjinja2 new file mode 100644 index 0000000..68e5161 --- /dev/null +++ b/cssfinder/templates/python_base_project.pyjinja2 @@ -0,0 +1,62 @@ +"""Contains example of dynamically generated configuration. + +In fact, what this script does, it simply uses cssfinder as library to perform +calculations. This approach allows us to determine list of tasks without typical +limitations of static files. + +""" + +from __future__ import annotations + +from pathlib import Path + +from cssfinder.api import run_project +from cssfinder.cssfproject import ( + AlgoMode, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, +) +from pydantic import EmailStr + +TASKS = { + {%- for name, task in project.tasks.items() %} + "{{ name }}": Task( + gilbert=GilbertCfg( + mode=AlgoMode.{{ task.gilbert.mode.value }}, + backend=BackendCfg( + name="{{ task.gilbert.backend.name }}", + precision=Precision.{{ task.gilbert.backend.precision.value }}, + ), + state=State(file=Path("{{ task.gilbert.state.file }}")), + runtime=RuntimeCfg( + visibility={{ task.gilbert.runtime.visibility }}, + max_epochs={{ task.gilbert.runtime.max_epochs }}, + iters_per_epoch={{ task.gilbert.runtime.iters_per_epoch }}, + max_corrections={{ task.gilbert.runtime.max_corrections }}, + ), + ), + ), + {%- endfor %} +} + +__project__ = CSSFProject( + meta=Meta( + author="{{ project.meta.author }}", + email=EmailStr("{{ project.meta.email }}"), + name="{{ project.meta.name }}", + description="{{ project.meta.description }}", + version=SemVerStr("{{ project.meta.version }}"), + ), + tasks=TASKS, + project_path=__file__, +) + +if __name__ == "__main__": + run_project(__project__) diff --git a/docs/development/00_setup.md b/docs/development/00_setup.md new file mode 100644 index 0000000..0c86017 --- /dev/null +++ b/docs/development/00_setup.md @@ -0,0 +1,42 @@ +# Setup + +This project uses `Python` programming language and requires at least python +`3.8` for development and distribution. Development dependencies +[`poetry`](https://pypi.org/project/poetry/) for managing dependencies and +distribution building. It is necessary to perform any operations in development +environment. + +To install poetry globally (preferred way) use `pip` in terminal: + +``` +pip install poetry +``` + +Then use + +``` +poetry shell +``` + +to spawn new shell with virtual environment activated. Virtual environment will +be indicated by terminal prompt prefix `(cssfinder-py3.10)`, version indicated +in prefix depends on used version of Python interpreter. It is not necessary to +use Python 3.10, however at least 3.8 is required. + +Within shell with active virtual environment use: + +``` +poetry install --sync +``` + +To install all dependencies. Every time you perform a `git pull` or change a +branch, you should call this command to make sure you have the correct versions +of dependencies. + +Last line should contain something like: + +``` +Installing the current project: cssfinder (0.1.0) +``` + +If no error messages are shown, You are good to go. diff --git a/docs/development/01_code_quality.md b/docs/development/01_code_quality.md new file mode 100644 index 0000000..ffbf7bd --- /dev/null +++ b/docs/development/01_code_quality.md @@ -0,0 +1,84 @@ +# Code quality + +To ensure that all code follow same style guidelines and code quality rules, +multiple static analysis tools are used. For simplicity, all of them are +configured as `pre-commit` ([learn about pre-commit](https://pre-commit.com/)) +hooks. Most of them however are listed as development dependencies. + +- `autocopyright`: This hook automatically adds copyright headers to files. It + is used to ensure that all files in the repository have a consistent + copyright notice. + +- `autoflake`: This hook automatically removes unused imports from Python code. + It is used to help keep code clean and maintainable by removing unnecessary + code. + +- `docformatter`: This hook automatically formats docstrings in Python code. It + is used to ensure that docstrings are consistent and easy to read. + +- `prettier`: This hook automatically formats code in a variety of languages, + including JavaScript, HTML, CSS, and Markdown. It is used to ensure that code + is consistently formatted and easy to read. + +- `isort`: This hook automatically sorts Python imports. It is used to ensure + that imports are organized in a consistent and readable way. + +- `black`: This hook automatically formats Python code. It is used to ensure + that code is consistently formatted and easy to read. + +- `check-merge-conflict`: This hook checks for merge conflicts. It is used to + ensure that code changes do not conflict with other changes in the + repository. + +- `check-case-conflict`: This hook checks for case conflicts in file names. It + is used to ensure that file names are consistent and do not cause issues on + case-sensitive file systems. + +- `trailing-whitespace`: This hook checks for trailing whitespace in files. It + is used to ensure that files do not contain unnecessary whitespace. + +- `end-of-file-fixer`: This hook adds a newline to the end of files if one is + missing. It is used to ensure that files end with a newline character. + +- `debug-statements`: This hook checks for the presence of debugging statements + (e.g., print statements) in code. It is used to ensure that code changes do + not contain unnecessary debugging code. + +- `check-added-large-files`: This hook checks for large files that have been + added to the repository. It is used to ensure that large files are not + accidentally committed to the repository. + +- `check-toml`: This hook checks for syntax errors in TOML files. It is used to + ensure that TOML files are well-formed. + +- `mixed-line-ending`: This hook checks for mixed line endings (e.g., a mix of + Windows and Unix line endings) in text files. It is used to ensure that text + files have consistent line endings. + +To run all checks, you must install hooks first with poe + +``` +poe install-hooks +``` + +After you have once used this command, you wont have to use it in this +environment. Then you can use + +``` +poe run-hooks +``` + +To run checks and automatic fixing. Not all issues can be automatically fixed, +some of them will require your intervention. + +Successful hooks run should leave no Failed tasks: + +![run_hooks_output](https://user-images.githubusercontent.com/56170852/223247968-8333e9ee-c0f0-4cce-afe1-a8e7917d9b0a.png) + +Example of failed task: + +![failed_task](https://user-images.githubusercontent.com/56170852/223249222-113a1269-fb3c-4d2c-b2ba-3d26e8ac090a.png) + +Those hooks will be run also while you try to commit anything. If any tasks +fails, no commit will be created, instead you will be expected to fix errors +and add stage fixes. Then you may retry running `git commit`. diff --git a/docs/development/02_packaging.md b/docs/development/02_packaging.md new file mode 100644 index 0000000..2974abd --- /dev/null +++ b/docs/development/02_packaging.md @@ -0,0 +1,36 @@ +# Packaging + +A Python Wheel is a built package format for Python that can be easily +installed and distributed, containing all the files necessary to install a +module and can be installed with pip with all dependencies automatically +installed too. + +To create wheel of cssfinder use `poe` task in terminal: + +``` +poe build +``` + +![poe_build](https://user-images.githubusercontent.com/56170852/223251363-61fc4d00-68ad-429c-9fbb-8ab7f4712451.png) + +This will create `dist/` directory with `cssfinder-0.7.0` or alike inside. + +Wheel file can be installed with + +``` +pip install ./dist/cssfinder-0.7.0 +``` + +What you expect is + +``` +Successfully installed cssfinder-0.7.0 +``` + +or rather something like + +``` +Successfully installed click-8.1.3 contourpy-1.0.7 cssfinder-0.7.0 cycler-0.11.0 dnspython-2.3.0 email-validator-1.3.1 fonttools-4.39.0 idna-3.4 jsonref-1.1.0 kiwisolver-1.4.4 llvmlite-0.39.1 markdown-it-py-2.2.0 matplotlib-3.7.1 mdurl-0.1.2 numba-0.56.4 numpy-1.23.5 packaging-23.0 pandas-1.5.3 pendulum-2.1.2 pillow-9.4.0 pydantic-1.10.5 pygments-2.14.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.7.1 pytzdata-2020.1 rich-13.3.2 scipy-1.10.1 six-1.16.0 typing-extensions-4.5.0 +``` + +But `cssfinder-0.7.0` should be included in this list. diff --git a/docs/development/03_profiling.md b/docs/development/03_profiling.md new file mode 100644 index 0000000..5164727 --- /dev/null +++ b/docs/development/03_profiling.md @@ -0,0 +1,13 @@ +# Profiling + +To run simple profiling, You can use following command: + +``` +python -mcProfile -o "#examples_profile_5qubits_prof.prof" "assets/profiling/5qubits_prof/cssfproject.py" +``` + +Then You can view output using [snakeviz](https://pypi.org/project/snakeviz/): + +``` +snakeviz "#examples_profile_5qubits_prof.prof" +``` diff --git a/docs/usage/00_installation_guide.md b/docs/usage/00_installation_guide.md index 96025dd..b2cc778 100644 --- a/docs/usage/00_installation_guide.md +++ b/docs/usage/00_installation_guide.md @@ -1 +1,169 @@ # Installation Guide + +Make sure you have Python installed. CSSFinder is compatible with Python 3.8 up +to 3.11. Python release files can be found on the official +[Python website](https://www.python.org/downloads/). + +!!! tip "Add Python to Path" + + Make sure to select `Add Python to PATH` during installation of Python interpreter. + After installation is complete, to check if Python was correctly added to system + Path, open a new terminal and run following command: + + ```bash + python --version + ``` + + Output should look similar to this: + + ```bash + Python 3.X.Y + ``` + + Where `3.X.Y` is the version of Python you have installed. + +## Global installation (quick) + +=== "Linux" + + To install CSSFinder globally, run following command: + + ```bash + pip install cssfinder + ``` + + !!! tip + + On some Linux distributions, especially older ones, you may need to use `pip3` + instead of `pip`. + +=== "Windows" + + To install CSSFinder globally, run following command: + + ```powershell + pip install cssfinder + ``` + +## Virtual environment installation (recommended) + +=== "Linux" + + To create a new virtual environment, `venv` module must be available for your Python + interpreter. Some of linux distributions may require to install additional package + to make this module available. + + After `venv` module is available, create a new virtual environment by running: + + ```bash + python -m venv cssfinder-env + ``` + + !!! tip + + On some Linux distributions, especially older ones, you may need to use `python3` + instead of `python`. + + Activate the virtual environment: + + ```bash + source cssfinder-env/bin/activate + ``` + + Install CSSFinder: + + ```bash + pip install cssfinder + ``` + +=== "Windows" + + To create a new virtual environment, run following command: + + ```powershell + python -m venv cssfinder-env + ``` + + Activate the virtual environment: + + ```powershell + .\cssfinder-env\scripts\activate + ``` + + Install CSSFinder: + + ```powershell + pip install cssfinder + ``` + + !!! warning "PDF export on Windows" + + CSSFinder can export PDF reports (and other formats too), but it uses + `weasyprint` for that and `weasyprint` relies on `GTK3`. Unfortunately it is + quite hard to get `GTK3` going on windows and `weasyprint` requires it to work. + Therefore you must handle installation yourself. + [Here](https://doc.courtbouillon.org/weasyprint/stable/first_steps.html#windows) + you can find official guidelines from `weasyprint`. + [This repository](https://github.com/tschoonj/GTK-for-Windows-Runtime-Environment-Installer) + may also help. Alternatively you can use WSL to install and run CSSFinder, as + its seamless to do that. + + Its worth mentioning that other formats are not affected by this issue. + +With virtual environment approach you will have to activate it every time you +open new terminal and want to use CSSFinder, as packages installed are not +available outside of virtual environment. This approach allows you to avoid +conflicts with other software. + +## Backend installation + +`cssfinder` package itself does not contain implementations of algorithms. +Those are shipped in packages called backends. Currently `cssfinder` supports +two backend packages: `cssfinder-backend-numpy` and `cssfinder-backend-rust`. +Those can be installed both as extras of `cssfinder` package and as standalone +modules. Both approaches yield the same result. + +=== "Linux" + + To install CSSFinder backends, run following commands: + + ```bash + pip install cssfinder[numpy] + pip install cssfinder[rust] + ``` + +=== "Windows" + + To install CSSFinder backends, run following commands: + + ```powershell + pip install cssfinder[numpy] + pip install cssfinder[rust] + ``` + +You don't need both `cssfinder[numpy]` and `cssfinder[rust]`, one will be +perfectly fine for most use cases. You can specify backend to use in project +settings. Unfortunately if you want to run task which was configured to use +backend X and you don't have backend X installed, task will fail. + +If you are unsure which one to choose, install both. This will spare you from +unexpected failures caused by missing backend. + +As an alternative to installing `cssfinder` extras (`cssfinder[numpy]` and +`cssfinder[rust]`) you may install `cssfinder-backend-numpy` and +`cssfinder-backend-rust` packages, which are exactly the same. + +Backends are dynamically detected from all locations from where Python can +import modules, thus any valid way of making backend code reachable for +interpreter will work. + +### Development version + +To install development version of CSSFinder, following command: + +``` +pip install git+https://github.com/Argmaster/pygerber +``` + +This will install latest semi-stable version of CSSFinder from GitHub +repository. diff --git a/docs/usage/02_project_guide.md b/docs/usage/02_project_guide.md new file mode 100644 index 0000000..183d288 --- /dev/null +++ b/docs/usage/02_project_guide.md @@ -0,0 +1,395 @@ +# Project Guide + +## Introduction + +In CSSFinder, computations are described in special `cssfproject.*` files +within dedicated directories. Such directory with all files within it is called +a `project`. Project must contain either `cssfproject.json` or `cssfproject.py` +file which describe list of tasks which can be executed with cssfinder. + +`JSON` file is purely declarative, but with special `$ref` substitution +support, while python scripts (`cssfproject.py`) allow for dynamic behaviors. + +Tasks are smallest possible unit of work which can be scheduled for execution +by CSSFinder. They can be automatically executed in parallel with automatic +queues to speed up calculations. + +## Project file + +=== "JSON" + + Example of project based on `cssfproject.json` is shipped with cssfinder and can be + cloned with: + + ```bash + cssfinder clone-example 5qubits_json + ``` + + Afterwards you can either open `./5qubits_json/cssfproject.json` file in your favorite + editor or use following command to print it to the console: + + ```bash + cssfinder project inspect ./5qubits_json/ + ``` + + Here is the output: + + ```json + { + "version": "1.0.0", + "meta": { + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", + "email": "argmaster.world@gmail.com", + "name": "5qubits", + "description": "Example of project configuration for 'Full separability of an n-quDit state' mode.", + "version": "1.0.0" + }, + "tasks": { + "main": { + "gilbert": { + "mode": "FSnQd", + "backend": { + "name": "numpy", + "precision": "single" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 2000, + "max_corrections": 1000 + }, + "state": { + "file": "{project.project_directory}/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "resources": { + "symmetries": null, + "projection": null + } + } + }, + "test_fsnqd_5qubits": { + "gilbert": { + "mode": { + "$ref": "#/tasks/main/gilbert/mode" + }, + "backend": { + "$ref": "#/tasks/main/gilbert/backend" + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 10, + "iters_per_epoch": 1000, + "max_corrections": 100 + }, + "state": { + "$ref": "#/tasks/main/gilbert/state" + }, + "resources": { + "$ref": "#/tasks/main/gilbert/resources" + } + } + } + } + } + ``` + +=== "Python" + + Example of project based on `cssfproject.py` is shipped with cssfinder and can be + cloned with: + + ```bash + cssfinder clone-example 5qubits_py + ``` + + Afterwards you can either open `./5qubits_json/cssfproject.py` file in your favorite + editor or use `cat` to display it in console: + + ```bash + cat ./5qubits_py/cssfproject.py + ``` + + Here is the output: + + ```python + from __future__ import annotations + + from pathlib import Path + + from pydantic import EmailStr + + from cssfinder.api import run_project + from cssfinder.cssfproject import ( + AlgoMode, + BackendCfg, + CSSFProject, + GilbertCfg, + Meta, + Precision, + RuntimeCfg, + SemVerStr, + State, + Task, + ) + + TASKS = [ + Task( + gilbert=GilbertCfg( + mode=AlgoMode.FSnQd, + backend=BackendCfg( + name="numpy", + precision=Precision.SINGLE, + ), + state=State(file=path.as_posix()), + runtime=RuntimeCfg( + visibility=0.4, + max_epochs=1000, + iters_per_epoch=1000, + max_corrections=1000, + ), + ), + ) + for path in Path(__file__).parent.glob("*_in.mtx") + ] + + __project__ = CSSFProject( + meta=Meta( + author="Krzysztof Wiśniewski; Marcin Wieśniak", + email=EmailStr("argmaster.world@gmail.com"), + name="5qubits", + description="Example of project configuration for 'Full separability of an " + "n-quDit state' mode.", + version=SemVerStr("1.0.0"), + ), + tasks=TASKS, + project_path=__file__, + ) + + if __name__ == "__main__": + run_project(__project__) + ``` + + CSSFinder can also evaluate Python project file and output equivalent JSON: + + ```bash + cssfinder project inspect ./5qubits_json/ + ``` + + Output should be similar to: + + ```json + { + "meta": { + "author": "Krzysztof Wiśniewski; Marcin Wieśniak", + "email": "argmaster.world@gmail.com", + "name": "5qubits", + "description": "Example of project configuration for 'Full separability of an n-quDit state' mode.", + "version": "1.0.0" + }, + "tasks": { + "0": { + "gilbert": { + "mode": "FSnQd", + "backend": { + "name": "numpy", + "precision": "single" + }, + "state": { + "file": "/home/argmaster/dev/repos/cssfinder/guide/5qubits_py/5qubits_in.mtx", + "depth": null, + "quantity": null + }, + "runtime": { + "visibility": 0.4, + "max_epochs": 1000, + "iters_per_epoch": 1000, + "max_corrections": 1000 + }, + "resources": { + "symmetries": null, + "projection": null + } + } + } + } + } + ``` + +## Project from scratch + +=== "JSON - `cssfproject.json`" + + To create new project from scratch you can use following command: + + ```bash + cssfinder create-new-json-project --no-interactive + ``` + + This will create new directory `new_project` with `cssfproject.json` file + inside. You can edit this file with your favorite editor or use `cssfinder` + commands to add task configuration (described in next section). + + `cssfinder create-new-json-project` command accepts options matching metadata fields + like `--author`, `--email` etc. Additionally you can omit `--no-interactive` flag + to be asked for metadata interactively with text user interface. + For more information about this command use: + + ```bash + cssfinder create-new-json-project --help + ``` + + Let's inspect the created project: + + === "Linux" + + ```bash + ls -la ./new_project/ + ``` + + Output should be similar to: + + ```log + total 16 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 16 01:05 . + drwxrwxr-x 7 argmaster argmaster 4096 Apr 16 00:38 .. + -rwxrwxr-x 1 argmaster argmaster 215 Apr 16 01:16 cssfproject.json + ``` + + === "Windows" + + ```bash + ls ./new_project/ + ``` + + Output should be similar to: + + ```log + total 16 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 16 01:05 . + drwxrwxr-x 7 argmaster argmaster 4096 Apr 16 00:38 .. + -rwxrwxr-x 1 argmaster argmaster 215 Apr 16 01:16 cssfproject.json + ``` + +=== "Python - `cssfproject.py`" + + To create new project from scratch you can use following command: + + ```cmd + cssfinder create-new-python-project --no-interactive + ``` + + This will create new directory `new_project` with `cssfproject.py` file + inside. You can edit this file with your favorite editor. CSSFinder does not + provide a way to edit Python project files as there are barely any rules for how + those files should be structured. + + `cssfinder create-new-python-project` command accepts options matching metadata fields + like `--author`, `--email` etc. Additionally you can omit `--no-interactive` flag + to be asked for metadata interactively with text user interface. + For more information about this command use: + + ```bash + cssfinder create-new-python-project --help + ``` + + Let's inspect the created project: + + === "Linux" + + ```bash + ls -la ./new_project/ + ``` + + Output should be similar to: + + ```log + total 16 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 16 01:05 . + drwxrwxr-x 7 argmaster argmaster 4096 Apr 16 00:38 .. + -rwxrwxr-x 1 argmaster argmaster 215 Apr 16 01:16 cssfproject.py + ``` + + === "Windows" + + ```bash + ls ./new_project/ + ``` + + Output should be similar to: + + ```log + total 16 + drwxrwxr-x 2 argmaster argmaster 4096 Apr 16 01:05 . + drwxrwxr-x 7 argmaster argmaster 4096 Apr 16 00:38 .. + -rwxrwxr-x 1 argmaster argmaster 215 Apr 16 01:16 cssfproject.py + ``` + +!!! warning "Project file precedence" + + If both `cssfproject.json` and `cssfproject.py` files are present in the same + directory, `cssfproject.json` will be used and `cssfproject.py` will be ignored. + There is no particular reason to prefer one over the other, but some loading order + must be established, so `cssfproject.json` was chosen to be first. + +## Adding tasks (JSON only) + +``` +%%MatrixMarket matrix array real symmetric +%Created with the Wolfram Language : www.wolfram.com +8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 +``` + +## JSON to Python conversion + +CSSFinder can convert JSON project file to Python project file. To do this use: + +```bash +cssfinder project to-python ./5qubits_json/ +``` + +If project is already a Python project using this command will fail. Because of +loading order, if project contains both `cssfproject.json` and +`cssfproject.py`, `cssfproject.json` will be loaded first and `cssfproject.py` +will be ignored. Therefore project containing both is not considered a Python +project and won't trigger +`'JSON_PROJECT_PATH': Provided path is not a valid JSON project path.` error. +However, it will complain about `cssfproject.py` being present in the +directory. From 3aa561c3c73aa27470f3a42ae6c8d61686005c5a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 22:55:30 +0200 Subject: [PATCH 218/227] Add missing parts of Project Guide and Quick Start Guide --- README.md | 18 ++- cssfinder/api.py | 7 ++ cssfinder/cli.py | 5 +- docs/usage/01_quick_start.md | 36 ++++++ docs/usage/02_project_guide.md | 193 ++++++++++++++++++++++++++------- 5 files changed, 211 insertions(+), 48 deletions(-) diff --git a/README.md b/README.md index e967fd4..4a0d551 100644 --- a/README.md +++ b/README.md @@ -47,6 +47,11 @@ algorithm were created: Development of those two implementations allowed us to better understand limits of what can and what can not become faster. +## Documentation + +CSSFinder online documentation can be found +[here](https://argmaster.github.io/CSSFinder/latest/). + ## Installation To install CSSFinder from PyPI, use `pip` in terminal: @@ -68,12 +73,12 @@ pip install cssfinder[rust] ``` For more detailed description of installation process visit CSSFinder -[online documentation](https://argmaster.github.io/cssfinder/latest/usage/00_installation_guide.md). +[online documentation](https://argmaster.github.io/CSSFinder/latest/usage/00_installation_guide.md). ## Quick start guide For quick start guide please visit -[Quick Start Guide](https://argmaster.github.io/cssfinder/latest/usage/01_quick_start.md) +[Quick Start Guide](https://argmaster.github.io/CSSFinder/latest/usage/01_quick_start.md) in CSSFinder online documentation. ## Command line interface @@ -87,9 +92,11 @@ cssfinder show-command-tree Output should look similar to this: ```log + ...cssfinder show-command-tree main - CSSFinder is a script for finding closest separable states. ├── clone-example - Clone one of examples to specific location. -├── create-new-project - Create new project. +├── create-new-json-project - Create new JSON based project directory `` in current working directory. +├── create-new-python-project - Create new Python based project directory `` in current working ├── list-backends - List available backends. ├── list-examples - Show list of all available example projects. ├── project - Group of commands for interaction with projects. @@ -100,12 +107,13 @@ main - CSSFinder is a script for finding closest separ │ ├── inspect-output - Load project from PROJECT_PATH and display output of task specified by │ ├── inspect-tasks - Load project from PROJECT_PATH and inspect configuration of tasks specified by │ ├── list-tasks - Load project from PROJECT_PATH and list names of all tasks defined. -│ └── run-tasks - Run tasks from the project. +│ ├── run-tasks - Run tasks from the project. +│ └── to-python - Load project from JSON_PROJECT_PATH and convert it to Python based project. └── show-command-tree - Show the command tree of your CLI. ``` ## Development For development guidelines please visit -[Development](https://argmaster.github.io/cssfinder/latest/development/00_setup.md) +[Development](https://argmaster.github.io/CSSFinder/latest/development/00_setup.md) in CSSFinder online documentation. diff --git a/cssfinder/api.py b/cssfinder/api.py index fd7f5ea..a26c384 100644 --- a/cssfinder/api.py +++ b/cssfinder/api.py @@ -214,6 +214,13 @@ def run_gilbert( logging.warning("Task %r finished.", config.task_name) + if is_rich: + rich.print(Panel.fit(f"[blue]Task {config.task_name} finished.")) + else: + print("-----------------------") + print(f"| Task {config.task_name} finished |") + print("-----------------------") + def create_gilbert( config: GilbertCfg, diff --git a/cssfinder/cli.py b/cssfinder/cli.py index 67a3a7d..47b9289 100644 --- a/cssfinder/cli.py +++ b/cssfinder/cli.py @@ -563,8 +563,8 @@ def _add_gilbert_task( # noqa: PLR0913 projection, derive, ), - no_interactive, - override_existing, + no_interactive=no_interactive, + override_existing=override_existing, ) @@ -680,7 +680,6 @@ def _run_tasks( default=False, help="Automatically open report in web browser.", ) -@click.pass_obj def _create_task_report( project_path: Path, task: str, diff --git a/docs/usage/01_quick_start.md b/docs/usage/01_quick_start.md index 7e22f2f..4abfdf5 100644 --- a/docs/usage/01_quick_start.md +++ b/docs/usage/01_quick_start.md @@ -323,3 +323,39 @@ with use of different software or use CSSFinder to generate report for you. This section will be natural continuation to `Example #1` section and will assume that reader have successfully followed instructions from there. + +CSSFinder provides a way to generate summary reports showing results of tasks +which were run. Those reports can be generated in HTML, PDF and JSON formats. +HTML and PDF are primarily intended for human consumption, while JSON is more +suitable for machine processing. + +=== "Linux - bash" + + To generate report in PDF format and automatically open it, use following command: + + ```bash + cssfinder project create-task-report ./5qubits_json/ task_0 --pdf --open + ``` + + After running this command, you should see report in your default PDF viewer. + +=== "Windows - powershell" + + To generate report in HTML format and automatically open it, use following command: + + ```bash + cssfinder project create-task-report ./5qubits_json/ task_0 --html --open + ``` + + !!! warning "PDF reports on Windows" + + Getting PDF reports to work on Windows can be troublesome. Please check out + [Installation Guide](https://argmaster.github.io/CSSFinder/latest/usage/00_installation_guide.html) + Windows installation for more information. + + After running this command, you should see report in your default HTML viewer. + +Example report looks like this: + +![image](https://github.com/Argmaster/CSSFinder/assets/56170852/5984b903-241a-447e-b9bf-8772ca3d2f02) +![image](https://github.com/Argmaster/CSSFinder/assets/56170852/b84dc7f1-271b-4272-a048-93970edff1f1) diff --git a/docs/usage/02_project_guide.md b/docs/usage/02_project_guide.md index 183d288..a9cbdf0 100644 --- a/docs/usage/02_project_guide.md +++ b/docs/usage/02_project_guide.md @@ -335,54 +335,167 @@ queues to speed up calculations. ## Adding tasks (JSON only) +!!! warning + + This section is a continuation to the previous one. If you haven't created a + project yet, please refer to the previous section. + + Current working directory should contain `new_project` project directory. + +!!! warning + + This section is only applicable to `cssfproject.json` projects. + +Main purpose of a project is to be a container for "tasks". Each task is just a +dictionary containing configuration for CSSFinder, describing what to do, with +what algorithm, what data to use and possibly some additional parameters +describing how PC resources should be used. They can be added either manually, +by editing `cssfproject.json` file, or by using `cssfinder` commands. + +We will continue with task utilizing Gilbert algorithm, as it is currently only +one implemented. To run this algorithm we need to provide a state matrix in +form of a file. + +To create `state.mtx` file you can use following command: + +=== "Linux" + + ```bash + echo '"%%MatrixMarket matrix array real symmetric + %Created with the Wolfram Language : www.wolfram.com + 8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + ' > ./new_project/state.mtx + ``` + +=== "Windows" + + ```powershell + echo '%%MatrixMarket matrix array real symmetric + %Created with the Wolfram Language : www.wolfram.com + 8 8 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + -2.5000000000000000E-01 + -2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 2.5000000000000000E-01 + 0.0000000000000000E+00 + 0.0000000000000000E+00 + ' > ./new_project/state.mtx + ``` + +Although you can also copy-paste the matrix into a file with any text editor. + +After creating matrix file, we can add task to the project. Following command +should do exactly that: + +```bash +cssfinder project add-gilbert-task ./new_project/ --no-interactive --state "{project.project_directory}/state.mtx" +``` + +Now we can check if task was correctly added by using following command: + +```bash +cssfinder project list-tasks -l ./new_project/ ``` -%%MatrixMarket matrix array real symmetric -%Created with the Wolfram Language : www.wolfram.com -8 8 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - -2.5000000000000000E-01 - 0.0000000000000000E+00 - -2.5000000000000000E-01 - -2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 2.5000000000000000E-01 - 0.0000000000000000E+00 - 0.0000000000000000E+00 + +Here is the output: + +```log +task_0 mode=FSnQd backend=numpy_jit ``` +Now we can run this task to make sure it works: + +```bash +cssfinder project run-tasks ./new_project/ -m task_0 +``` + +Here is the expected output: + +```log +╭──────────────────────╮ +│ Task task_0 started. │ +╰──────────────────────╯ +╭───────────────────────╮ +│ Task task_0 finished. │ +╰───────────────────────╯ +``` + +Now you can utilize the output data to, for example, create HTML report. See +[Quick Start Guide - Report Generation](https://argmaster.github.io/CSSFinder/latest/usage/01_quick_start.html#report-generation) +for more information. + ## JSON to Python conversion CSSFinder can convert JSON project file to Python project file. To do this use: ```bash -cssfinder project to-python ./5qubits_json/ +cssfinder project to-python ./new_project/ ``` If project is already a Python project using this command will fail. Because of From 372a3e8691356fdd1a17928b80b71444e0dfa84c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:14:19 +0200 Subject: [PATCH 219/227] Fix type issue in _load_py_cssfproject --- cssfinder/cssfproject.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index e655fa6..39b9150 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -224,7 +224,7 @@ def _load_py_cssfproject(cls, project_path: Path) -> Self: project_module = importlib.util.module_from_spec(spec) spec.loader.exec_module(project_module) - project_object = getattr(project_module, "__project__", None) + project_object: CSSFProject = getattr(project_module, "__project__", None) if project_object is None: msg = ( From 6bc4cd2d8c478b3ab3c3eff3d96b8e56e7819c24 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:36:54 +0200 Subject: [PATCH 220/227] Batch fix ruff issues --- cssfinder/algorithm/backend/base.py | 5 +-- cssfinder/algorithm/backend/loader.py | 5 +-- cssfinder/algorithm/gilbert.py | 5 +-- cssfinder/examples/__init__.py | 4 +-- .../examples/benchmark_32x32/cssfproject.py | 5 ++- .../examples/benchmark_64x64/cssfproject.py | 5 ++- cssfinder/interactive.py | 4 +-- cssfinder/io/gilbert_io.py | 7 ++-- cssfinder/io/matrix.py | 20 +++++++---- cssfinder/log.py | 2 +- cssfinder/reports/manager.py | 10 ++++-- cssfinder/reports/math.py | 4 +-- cssfinder/reports/plotting.py | 4 ++- cssfinder/reports/renderer.py | 6 ++-- pyproject.toml | 4 ++- scripts/release.py | 33 +++++++++++-------- scripts/ruff.toml | 5 +++ test/conftest.py | 5 +-- test/ruff.toml | 4 +++ test/test_reports/base.py | 4 ++- test/test_reports/test_pdf.py | 1 - test/test_system/base.py | 14 ++++---- test/test_system/test_sbipa.py | 3 +- 23 files changed, 99 insertions(+), 60 deletions(-) create mode 100644 scripts/ruff.toml create mode 100644 test/ruff.toml diff --git a/cssfinder/algorithm/backend/base.py b/cssfinder/algorithm/backend/base.py index 2ae226b..c616daf 100644 --- a/cssfinder/algorithm/backend/base.py +++ b/cssfinder/algorithm/backend/base.py @@ -43,7 +43,7 @@ class BackendBase: author: ClassVar[str] = "" description: ClassVar[str] = "" - def __init__( # noqa: PLR0913 + def __init__( self, initial: npt.NDArray[np.complex128], depth: int, @@ -61,7 +61,8 @@ def __init__( # noqa: PLR0913 self.is_debug = is_debug def set_symmetries( - self, symmetries: list[list[npt.NDArray[np.complex128]]] + self, + symmetries: list[list[npt.NDArray[np.complex128]]], ) -> None: """Set symmetries to use during calculations. diff --git a/cssfinder/algorithm/backend/loader.py b/cssfinder/algorithm/backend/loader.py index c047671..58b1e40 100644 --- a/cssfinder/algorithm/backend/loader.py +++ b/cssfinder/algorithm/backend/loader.py @@ -46,7 +46,8 @@ class Loader: """Backend loader class.""" BACKEND_NAME_REGEX: ClassVar[re.Pattern] = re.compile( - r"cssfinder(_|-)backend(_|-)[a-z0-9_\-]+", re.IGNORECASE + r"cssfinder(_|-)backend(_|-)[a-z0-9_\-]+", + re.IGNORECASE, ) def __init__(self) -> None: @@ -169,7 +170,7 @@ def get_rich_table(self) -> Table: f"{cls.__module__}.{cls.__qualname__}", getattr(cls, "description", ""), ) - except (TypeError, ValueError): + except (TypeError, ValueError): # noqa: PERF203 logging.warning("Failed to display information about backed %r", value) return table diff --git a/cssfinder/algorithm/gilbert.py b/cssfinder/algorithm/gilbert.py index 47136ed..d69cd25 100644 --- a/cssfinder/algorithm/gilbert.py +++ b/cssfinder/algorithm/gilbert.py @@ -39,7 +39,7 @@ class Gilbert: """Class interface of gilbert algorithm.""" - def __init__( + def __init__( # noqa: PLR0913 self, *, initial: npt.NDArray[np.complex128], @@ -72,7 +72,8 @@ def __init__( ) def set_symmetries( - self, symmetries: list[list[npt.NDArray[np.complex128]]] + self, + symmetries: list[list[npt.NDArray[np.complex128]]], ) -> None: """Set symmetries to use during calculations. diff --git a/cssfinder/examples/__init__.py b/cssfinder/examples/__init__.py index 212fedf..b348f15 100644 --- a/cssfinder/examples/__init__.py +++ b/cssfinder/examples/__init__.py @@ -51,7 +51,7 @@ class Example(Enum): benchmark_32x32 = "benchmark_32x32" benchmark_64x64 = "benchmark_64x64" - def get_sha256(self) -> hashlib._Hash: # noqa: SLF001 + def get_sha256(self) -> hashlib._Hash: """Calculate and return SHA-256 of example project file.""" source = self.get_project().project_file content = source.read_bytes() @@ -93,7 +93,7 @@ def get_info_table(cls) -> Table: f"{len(project.tasks)}", project.meta.description, ) - except FileNotFoundError: + except FileNotFoundError: # noqa: PERF203 table.add_row( entry.value, "---", diff --git a/cssfinder/examples/benchmark_32x32/cssfproject.py b/cssfinder/examples/benchmark_32x32/cssfproject.py index fc6557a..e4bc750 100644 --- a/cssfinder/examples/benchmark_32x32/cssfproject.py +++ b/cssfinder/examples/benchmark_32x32/cssfproject.py @@ -32,8 +32,6 @@ from pathlib import Path -from pydantic import EmailStr - from cssfinder.api import run_project from cssfinder.cssfproject import ( AlgoMode, @@ -47,6 +45,7 @@ State, Task, ) +from pydantic import EmailStr TASKS = {} @@ -61,7 +60,7 @@ precision=precision, ), state=State( - file=(Path(__file__).parent / "5qubits_in.mtx").as_posix() + file=(Path(__file__).parent / "5qubits_in.mtx").as_posix(), ), runtime=RuntimeCfg( visibility=0.4, diff --git a/cssfinder/examples/benchmark_64x64/cssfproject.py b/cssfinder/examples/benchmark_64x64/cssfproject.py index f09982d..60052cd 100644 --- a/cssfinder/examples/benchmark_64x64/cssfproject.py +++ b/cssfinder/examples/benchmark_64x64/cssfproject.py @@ -32,8 +32,6 @@ from pathlib import Path -from pydantic import EmailStr - from cssfinder.api import run_project from cssfinder.cssfproject import ( AlgoMode, @@ -48,6 +46,7 @@ State, Task, ) +from pydantic import EmailStr PROJECT_DIR = Path(__file__).parent PROJECT_SYMMETRIES = PROJECT_DIR / "symmetries" @@ -85,7 +84,7 @@ p.as_posix() for p in PROJECT_SYMMETRIES.glob("sym_sym_2_*.mtx") ], - ] + ], ), ), ) diff --git a/cssfinder/interactive.py b/cssfinder/interactive.py index 51f0fc8..2ed0041 100644 --- a/cssfinder/interactive.py +++ b/cssfinder/interactive.py @@ -116,7 +116,7 @@ def _load_default_name_from_git() -> str: try: retval = subprocess.run( - ["git", "config", "user.name"], # noqa: S603, S607 + ["git", "config", "user.name"], capture_output=True, check=False, ) @@ -134,7 +134,7 @@ def _load_default_email_from_git() -> EmailStr: try: retval = subprocess.run( - ["git", "config", "user.email"], # noqa: S603, S607 + ["git", "config", "user.email"], capture_output=True, check=False, ) diff --git a/cssfinder/io/gilbert_io.py b/cssfinder/io/gilbert_io.py index 4664a09..b82f0d0 100644 --- a/cssfinder/io/gilbert_io.py +++ b/cssfinder/io/gilbert_io.py @@ -43,7 +43,8 @@ class GilbertIO: """Loader of Gilbert algorithm assets.""" def __init__( - self, matrix_format: MatrixFormat = MatrixFormat.MATRIX_MARKET + self, + matrix_format: MatrixFormat = MatrixFormat.MATRIX_MARKET, ) -> None: self.loader = MatrixIO.new(matrix_format) @@ -63,7 +64,9 @@ def load_state(self, source: str | Path) -> npt.NDArray[np.complex128]: """ mtx = self.loader.load(source).astype(np.complex128) logging.info( - "Loaded matrix from %r of shape %r", Path(source).as_posix(), mtx.shape + "Loaded matrix from %r of shape %r", + Path(source).as_posix(), + mtx.shape, ) # We are expecting loaded ndarray to be a square matrix, all other numbers of diff --git a/cssfinder/io/matrix.py b/cssfinder/io/matrix.py index a4e414e..489c9d4 100644 --- a/cssfinder/io/matrix.py +++ b/cssfinder/io/matrix.py @@ -70,7 +70,8 @@ def new(cls, matrix_format: MatrixFormat) -> MatrixIO: return io def load( - self, src: str | Path | IO[bytes] + self, + src: str | Path | IO[bytes], ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: """Load matrix from file as numpy array.""" if isinstance(src, (str, Path)): @@ -81,7 +82,8 @@ def load( @abstractmethod def _load( - self, src: IO[bytes] + self, + src: IO[bytes], ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: ... @@ -101,7 +103,9 @@ def dump( @abstractmethod def _dump( - self, data: npt.NDArray[np.int64 | np.float64 | np.complex128], dest: IO[bytes] + self, + data: npt.NDArray[np.int64 | np.float64 | np.complex128], + dest: IO[bytes], ) -> None: ... @@ -112,14 +116,18 @@ class MatrixMarketIO(MatrixIO): matrix_format: ClassVar[MatrixFormat] = MatrixFormat.MATRIX_MARKET def _load( - self, dest: IO[bytes] + self, + dest: IO[bytes], ) -> npt.NDArray[np.int64 | np.float64 | np.complex128]: mtx = scipy.io.mmread(dest) - assert mtx is not None + if mtx is None: + raise TypeError return np.array(mtx) def _dump( - self, data: npt.NDArray[np.int64 | np.float64 | np.complex128], dest: IO[bytes] + self, + data: npt.NDArray[np.int64 | np.float64 | np.complex128], + dest: IO[bytes], ) -> None: scipy.io.mmwrite( dest, diff --git a/cssfinder/log.py b/cssfinder/log.py index aed910f..84104af 100755 --- a/cssfinder/log.py +++ b/cssfinder/log.py @@ -116,7 +116,7 @@ class MarkupStripFormatter(logging.Formatter): """ - def format(self, record: LogRecord) -> str: # noqa: A003 + def format(self, record: LogRecord) -> str: """Return the formatted string of a log record after stripping all formatting tags. diff --git a/cssfinder/reports/manager.py b/cssfinder/reports/manager.py index 8d8a2db..72a2a03 100644 --- a/cssfinder/reports/manager.py +++ b/cssfinder/reports/manager.py @@ -79,7 +79,11 @@ def prepare(self) -> PreparedReportManager: plots["iterations"] = plotter.plot_iteration() return PreparedReportManager( - self.project, plotter.slope_props, plots, self.task, corrections + self.project, + plotter.slope_props, + plots, + self.task, + corrections, ) @@ -97,7 +101,9 @@ class PreparedReportManager: @classmethod def register_renderer( - cls, renderer_cls: Type[Renderer], report_type: ReportType + cls, + renderer_cls: Type[Renderer], + report_type: ReportType, ) -> None: """Register renderer for report type.""" cls.RENDERERS[report_type] = renderer_cls diff --git a/cssfinder/reports/math.py b/cssfinder/reports/math.py index 23106f2..1fe0e2c 100644 --- a/cssfinder/reports/math.py +++ b/cssfinder/reports/math.py @@ -247,7 +247,6 @@ def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: The optimum correction value for the input array of values. """ - values = values upper_half = values[len(values) // 2 :] optimum = upper_half[-1] - 1e-6 @@ -262,8 +261,7 @@ def find_correction_optimum(values: npt.NDArray[np.float64]) -> np.float64: @lru_cache(16) def _r_indexes(length: int) -> npt.NDArray[np.float64]: indexes = np.arange(length) - difference = np.mean(np.square(indexes)) - np.square(np.mean(indexes)) - return difference # type: ignore[no-any-return] + return np.mean(np.square(indexes)) - np.square(np.mean(indexes)) # type: ignore[no-any-return] @lru_cache(16) diff --git a/cssfinder/reports/plotting.py b/cssfinder/reports/plotting.py index 714fc89..8c27d90 100644 --- a/cssfinder/reports/plotting.py +++ b/cssfinder/reports/plotting.py @@ -86,7 +86,9 @@ def plot_corrections(self, axes: Optional[plt.Axes] = None) -> Plot: axes = plt.subplot() axes.plot( - self.corrections[["index"]], self.corrections[["value"]], label="correction" + self.corrections[["index"]], + self.corrections[["value"]], + label="correction", ) axes.hlines( [self.slope_props.optimum], diff --git a/cssfinder/reports/renderer.py b/cssfinder/reports/renderer.py index a1a95fe..6cffa1e 100644 --- a/cssfinder/reports/renderer.py +++ b/cssfinder/reports/renderer.py @@ -93,7 +93,7 @@ def meta(self) -> OrderedDict: "Email": self.task.project.meta.email, "Description": self.task.project.meta.description, "Version": self.task.project.meta.version, - } + }, ) @property @@ -107,7 +107,7 @@ def math_props(self) -> OrderedDict: "Offset (optimum)": f"{self.props.optimum:.3f}", "Trend (aa1)": f"{self.props.aa1:.3f}", "Exp Offset (bb1)": f"{self.props.bb1:.3f}", - } + }, ) @@ -150,5 +150,5 @@ class DefaultDestinationNotSpecifiedError(Exception): def __init__(self, report_type: ReportType) -> None: super().__init__( f"Default destination for report object of type {report_type.name!r} " - "was not specified." + "was not specified.", ) diff --git a/pyproject.toml b/pyproject.toml index 30b7014..6572560 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -279,7 +279,9 @@ ignore = [ "D105", # Adding docstrings in all magic methods doesn't make sense, as usually they are just boilerplate to support operators. "FIX002", "D107", # Adding docstring to __init__ doesn't make sense when class already has its docstring. - "T201", # print() function is extensively used to interact with user. + "T201", # print() function is extensively used to interact with user. + "S603", # `subprocess` call: check for execution of untrusted input. + "S607", # Starting a process with a partial executable path. ] [tool.ruff.lint.pylint] diff --git a/scripts/release.py b/scripts/release.py index 24d69cc..2299823 100644 --- a/scripts/release.py +++ b/scripts/release.py @@ -50,23 +50,27 @@ def create(version: str) -> None: VERSION - valid SemVer version string, eg. 1.3.2, without 'v' prefix. """ - retval = subprocess.run(["git", "branch", "--show-current"], capture_output=True) + retval = subprocess.run( + ["git", "branch", "--show-current"], + capture_output=True, + check=False, + ) print(retval.stdout.decode("utf-8")) is_dev = retval.stdout.decode("utf-8").startswith("dev") - retval = subprocess.run(["git", "status"], capture_output=True) + retval = subprocess.run(["git", "status"], capture_output=True, check=False) print(retval.stdout.decode("utf-8")) is_dirty = "Changes not staged for commit" in retval.stdout.decode("utf-8") if is_dirty: - subprocess.run(["git", "add", "-A"]) - subprocess.run(["git", "stash"]) + subprocess.run(["git", "add", "-A"], check=False) + subprocess.run(["git", "stash"], check=False) if not is_dev: - subprocess.run(["git", "switch", "dev"]) + subprocess.run(["git", "switch", "dev"], check=False) - subprocess.run(["git", "pull"]) - subprocess.run(["git", "switch", "-c", f"release/{version}"]) + subprocess.run(["git", "pull"], check=False) + subprocess.run(["git", "switch", "-c", f"release/{version}"], check=False) replace_version( PYPROJECT_PATH, r"version\s*=\s*\"(.*?)\"\n", @@ -83,14 +87,17 @@ def create(version: str) -> None: f"cssfinder-{version}", count=0, ) - subprocess.run(["git", "add", "-A"]) - subprocess.run(["poetry", "run", "poe", "run-hooks"]) - subprocess.run(["git", "add", "-A"]) - subprocess.run(["git", "commit", "-m", f"Bump version to {version}"]) - subprocess.run(["git", "push", "--set-upstream", "origin", f"release/{version}"]) + subprocess.run(["git", "add", "-A"], check=False) + subprocess.run(["poetry", "run", "poe", "run-hooks"], check=False) + subprocess.run(["git", "add", "-A"], check=False) + subprocess.run(["git", "commit", "-m", f"Bump version to {version}"], check=False) + subprocess.run( + ["git", "push", "--set-upstream", "origin", f"release/{version}"], + check=False, + ) if is_dirty: - subprocess.run(["git", "stash", "pop"]) + subprocess.run(["git", "stash", "pop"], check=False) def replace_version(src: Path, regex: str, replacement: str, count: int = 1) -> None: diff --git a/scripts/ruff.toml b/scripts/ruff.toml new file mode 100644 index 0000000..aece8bd --- /dev/null +++ b/scripts/ruff.toml @@ -0,0 +1,5 @@ +[lint] +extend-ignore = [ + "S607", # Starting a process with a partial executable path. + "S603", # `subprocess` call: check for execution of untrusted input. +] diff --git a/test/conftest.py b/test/conftest.py index d30bde0..3819c97 100644 --- a/test/conftest.py +++ b/test/conftest.py @@ -43,12 +43,13 @@ def pytest_configure(config: pytest.Config) -> None: def pytest_collection_modifyitems( - config: pytest.Config, items: Iterable[pytest.Item] + config: pytest.Config, + items: Iterable[pytest.Item], ) -> None: """Modify list of tests.""" if config.getoption("--pdf-expect-fail"): skip_mark = pytest.mark.skip( - reason="Running only @pytest.mark.pdf_expect_fail (--pdf-expect-fail used)." + reason="Running only @pytest.mark.pdf_expect_fail (--pdf-expect-fail used).", ) for item in items: if "pdf_expect_fail" not in item.keywords: diff --git a/test/ruff.toml b/test/ruff.toml new file mode 100644 index 0000000..9614b6c --- /dev/null +++ b/test/ruff.toml @@ -0,0 +1,4 @@ +[lint] +extend-ignore = [ + "S101", # Allow asserts in test code. +] diff --git a/test/test_reports/base.py b/test/test_reports/base.py index c96128d..5a7b123 100644 --- a/test/test_reports/base.py +++ b/test/test_reports/base.py @@ -44,7 +44,9 @@ class ReportTestBase(SetupRunProjectMixin): def generate_report(self, report_type: ReportType) -> None: """Generate report.""" for report in create_report_from( - self.get_project_directory(), self.TEST_TASK_NAME, [report_type] + self.get_project_directory(), + self.TEST_TASK_NAME, + [report_type], ): report.save_default() diff --git a/test/test_reports/test_pdf.py b/test/test_reports/test_pdf.py index 9b6e5c7..870bde4 100644 --- a/test/test_reports/test_pdf.py +++ b/test/test_reports/test_pdf.py @@ -25,7 +25,6 @@ from test.test_reports.base import ReportTestBase import pytest - from cssfinder.reports.pdf import WEasyPrintNotAvailableError from cssfinder.reports.renderer import ReportType diff --git a/test/test_system/base.py b/test/test_system/base.py index 462527e..b7f266c 100644 --- a/test/test_system/base.py +++ b/test/test_system/base.py @@ -29,7 +29,6 @@ from typing import TYPE_CHECKING import numpy as np - from cssfinder.api import run_project_from from cssfinder.io.gilbert_io import GilbertIO @@ -78,17 +77,20 @@ def setup_class(cls) -> None: cls._temporary_directory = TemporaryDirectory() shutil.copytree( - cls.PROJECT_PATH.as_posix(), cls.get_project_directory().as_posix() + cls.PROJECT_PATH.as_posix(), + cls.get_project_directory().as_posix(), ) run_project_from( - cls.get_project_directory(), [cls.TEST_TASK_NAME], force_sequential=True + cls.get_project_directory(), + [cls.TEST_TASK_NAME], + force_sequential=True, ) gilbert_io = GilbertIO() cls.corrections = gilbert_io.load_corrections( - cls.get_output_directory() / "corrections.json" + cls.get_output_directory() / "corrections.json", ) cls.state = gilbert_io.load_state(cls.get_output_directory() / "state.mtx") @@ -108,10 +110,10 @@ class ModeTest(SetupRunProjectMixin): class MinMax: """Well named container for max and min values of floating range.""" - min: float # noqa: A003 # not needed in this scope + min: float # not needed in this scope """Minimal value of range.""" - max: float # noqa: A003 # not needed in this scope + max: float # not needed in this scope """Maximal value of range.""" EXPECTED_MINIMAL_NUMBER_OF_CORRECTIONS: int diff --git a/test/test_system/test_sbipa.py b/test/test_system/test_sbipa.py index 1eba9e5..03241dd 100644 --- a/test/test_system/test_sbipa.py +++ b/test/test_system/test_sbipa.py @@ -25,7 +25,6 @@ from test.test_system.base import ModeTest import pytest - from cssfinder.examples import Example @@ -44,7 +43,7 @@ class Test_SBiPa(ModeTest): # noqa: N801 # Underscore used for readability. class Test_SBiPa_WithProjection( # noqa: N801 # Underscore used for readability. - ModeTest + ModeTest, ): """Test behavior of SBiPa mode of Gilbert algorithm with projections.""" From 2528e1acd8786dd1562158a16cfaa7995b34c88e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:41:20 +0200 Subject: [PATCH 221/227] Add docs deploy action --- .github/workflows/build_n_deploy_docs.yaml | 53 ++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 .github/workflows/build_n_deploy_docs.yaml diff --git a/.github/workflows/build_n_deploy_docs.yaml b/.github/workflows/build_n_deploy_docs.yaml new file mode 100644 index 0000000..9e0e75b --- /dev/null +++ b/.github/workflows/build_n_deploy_docs.yaml @@ -0,0 +1,53 @@ +--- +name: Build & Deploy Docs + +on: + push: + tags: + - "v*" + + workflow_dispatch: + +concurrency: + group: ${{ github.action_path }}-${{ github.ref }}-build-n-deploy-docs + cancel-in-progress: false + +jobs: + run-build-n-deploy-docs: + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest] + python-version: ["3.8"] + + runs-on: ${{ matrix.os }} + + steps: + - name: Checkout code + uses: actions/checkout@v3.6.0 + with: + fetch-depth: 0 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4.7.0 + with: + python-version: ${{ matrix.python-version }} + architecture: "x64" + + - name: Install Poetry + run: pip install poetry==1.8.2 + + - name: Install dependencies + run: poetry install --with=docs --no-cache --sync + + - name: Install Mike + run: poetry run pip install mike + + - name: Configure Git + run: | + git config user.name github-actions + git config user.email argmaster.world@gmail.com + + - name: Run build & deploy documentation + run: | + poetry run mike deploy --push --update-aliases $(poetry version | awk '{ print $2 }') latest -F mkdocs.yaml From 74f2037dab343aee43abaa76abc1e80ab3308dc5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:41:53 +0200 Subject: [PATCH 222/227] Bump poetry version used by CI to 1.8.2 --- .github/workflows/code_quality.yaml | 2 +- .github/workflows/deploy_to_pypi.yaml | 2 +- .github/workflows/deploy_to_test_pypi.yaml | 2 +- .github/workflows/reports_tests.yaml | 2 +- .github/workflows/system_tests.yaml | 2 +- .github/workflows/type_check.yaml | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml index 9da8bf1..dd9e0db 100644 --- a/.github/workflows/code_quality.yaml +++ b/.github/workflows/code_quality.yaml @@ -55,7 +55,7 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies run: poetry install --no-cache --sync diff --git a/.github/workflows/deploy_to_pypi.yaml b/.github/workflows/deploy_to_pypi.yaml index bf29ef7..dd61eea 100644 --- a/.github/workflows/deploy_to_pypi.yaml +++ b/.github/workflows/deploy_to_pypi.yaml @@ -26,7 +26,7 @@ jobs: architecture: "x64" - name: Install Poetry 📜 - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies 🗄️ run: poetry install --no-cache --sync diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index a1203e2..0be419e 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -25,7 +25,7 @@ jobs: architecture: "x64" - name: Install Poetry 📜 - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies 🗄️ run: poetry install --no-cache --sync diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index 8127c84..a365085 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -55,7 +55,7 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies run: poetry install --no-cache --sync diff --git a/.github/workflows/system_tests.yaml b/.github/workflows/system_tests.yaml index 5161638..20c6478 100644 --- a/.github/workflows/system_tests.yaml +++ b/.github/workflows/system_tests.yaml @@ -55,7 +55,7 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies run: poetry install --no-cache --sync diff --git a/.github/workflows/type_check.yaml b/.github/workflows/type_check.yaml index 768bd4a..fa2d05f 100644 --- a/.github/workflows/type_check.yaml +++ b/.github/workflows/type_check.yaml @@ -55,7 +55,7 @@ jobs: architecture: "x64" - name: Install Poetry - run: pip install poetry==1.4.0 + run: pip install poetry==1.8.2 - name: Install dependencies run: poetry install --no-cache --sync From 9c196ed0106a17e704493041306e5b8bcad294fa Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:42:19 +0200 Subject: [PATCH 223/227] Remove tagging on dev releases --- .github/workflows/deploy_to_test_pypi.yaml | 7 ------- 1 file changed, 7 deletions(-) diff --git a/.github/workflows/deploy_to_test_pypi.yaml b/.github/workflows/deploy_to_test_pypi.yaml index 0be419e..6285de2 100644 --- a/.github/workflows/deploy_to_test_pypi.yaml +++ b/.github/workflows/deploy_to_test_pypi.yaml @@ -44,13 +44,6 @@ jobs: run: | echo "version=$(poetry version | awk '{ print $2 }')" >> $GITHUB_OUTPUT - - name: Create development 🔨 Tag 🏷️ - id: tag-version - uses: mathieudutour/github-tag-action@v6.1 - with: - custom_tag: ${{ steps.project-version.outputs.version }} - github_token: ${{ secrets.REPO_ACCESS_TOKEN }} - - name: Publish distribution 📦 to Test PyPI # Executed always uses: pypa/gh-action-pypi-publish@release/v1 From 2587354411cbae200daa39f638fbd0dcb8d3e847 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:45:45 +0200 Subject: [PATCH 224/227] Fix mypy issues in _load_py_cssfproject --- cssfinder/cssfproject.py | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/cssfinder/cssfproject.py b/cssfinder/cssfproject.py index 39b9150..2d4a10c 100644 --- a/cssfinder/cssfproject.py +++ b/cssfinder/cssfproject.py @@ -224,7 +224,7 @@ def _load_py_cssfproject(cls, project_path: Path) -> Self: project_module = importlib.util.module_from_spec(spec) spec.loader.exec_module(project_module) - project_object: CSSFProject = getattr(project_module, "__project__", None) + project_object = getattr(project_module, "__project__", None) if project_object is None: msg = ( @@ -233,6 +233,14 @@ def _load_py_cssfproject(cls, project_path: Path) -> Self: ) raise ImportError(msg) + if not isinstance(project_object, cls): + msg = ( + f"Expected CSSFProject object in '__project__' field in {project_path}." + ) + raise TypeError( + msg, + ) + if not isinstance(project_object, cls): msg = ( "Incorrect object in '__project__' field, should contain " From 8ac549c98c019ab916e325f7d26d4378a080ef0d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Tue, 16 Apr 2024 23:59:28 +0200 Subject: [PATCH 225/227] Disable report tests on MacOS - flaky test --- .github/workflows/reports_tests.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/reports_tests.yaml b/.github/workflows/reports_tests.yaml index a365085..0238ad0 100644 --- a/.github/workflows/reports_tests.yaml +++ b/.github/workflows/reports_tests.yaml @@ -39,7 +39,7 @@ jobs: strategy: fail-fast: false matrix: - os: [ubuntu-latest, windows-latest, macOS-latest] + os: [ubuntu-latest, windows-latest] python-version: ["3.8", "3.9", "3.10"] runs-on: ${{ matrix.os }} From 95c95e46b5907a21816b40f07b82c5ac42cf6fc3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 17 Apr 2024 00:46:09 +0200 Subject: [PATCH 226/227] Bump version to 0.8.0 --- cssfinder/__init__.py | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/cssfinder/__init__.py b/cssfinder/__init__.py index df00772..a58a9b3 100644 --- a/cssfinder/__init__.py +++ b/cssfinder/__init__.py @@ -26,4 +26,4 @@ from __future__ import annotations -__version__ = "0.7.0" +__version__ = "0.8.0" diff --git a/pyproject.toml b/pyproject.toml index 6572560..ebde7bf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] # ANCHOR: tool.poetry name = "cssfinder" -version = "0.7.0" +version = "0.8.0" description = "Tool for Hilbert-Schmidt distance calculation with Gilbert algorithm." authors = [ "Krzysztof Wiśniewski ", From f8309fe692aa611e1273a1de84f4d674299bb04a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Krzysztof=20Wi=C5=9Bniewski?= Date: Wed, 17 Apr 2024 00:51:37 +0200 Subject: [PATCH 227/227] Update CHANGELOG.md --- CHANGELOG.md | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6711e2a..a969eae 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,14 @@ NOTE: CSSFinder follows the [semver](https://semver.org/) versioning standard. +### 0.8.0 - April 17, 2024 + +- Added documentation with MkDocs. Documentation contains multiple guides for + new users and full autogenerated package reference. +- Changed command line interface. Now `cssfinder project` commands no longer + auto-detect project as current working directory. +- Added JSON report format. + ### 0.7.0 - May 19, 2023 - Added G3PaE3qD mode support.
    Changelog

    Sourced from cryptography's changelog.

    42.0.4 - 2024-02-20

    
* Fixed a null-pointer-dereference and segfault that could occur when
creating
a PKCS#12 bundle. Credit to **Alexander-Programming** for reporting the
  issue. **CVE-2024-26130**
* Fixed ASN.1 encoding for PKCS7/SMIME signed messages. The fields
``SMIMECapabilities``
and ``SignatureAlgorithmIdentifier`` should now be correctly encoded
according to the
  definitions in :rfc:`2633` :rfc:`3370`.

    .. _v42-0-3:
    

    42.0.3 - 2024-02-15

    • Fixed an initialization issue that caused key loading failures for some users.

    .. _v42-0-2:

    42.0.2 - 2024-01-30

    
* Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL
3.2.1.
* Fixed an issue that prevented the use of Python buffer protocol
objects in
  ``sign`` and ``verify`` methods on asymmetric keys.
* Fixed an issue with incorrect keyword-argument naming with
``EllipticCurvePrivateKey``

:meth:`~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.exchange`,
  ``X25519PrivateKey``

:meth:`~cryptography.hazmat.primitives.asymmetric.x25519.X25519PrivateKey.exchange`,
  ``X448PrivateKey``

:meth:`~cryptography.hazmat.primitives.asymmetric.x448.X448PrivateKey.exchange`,
  and ``DHPrivateKey``

:meth:`~cryptography.hazmat.primitives.asymmetric.dh.DHPrivateKey.exchange`.

    .. _v42-0-1:
    

    42.0.1 - 2024-01-24

    • Fixed an issue with incorrect keyword-argument naming with EllipticCurvePrivateKey :meth:~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.sign.
    • Resolved compatibility issue with loading certain RSA public keys in :func:~cryptography.hazmat.primitives.serialization.load_pem_public_key.

    .. _v42-0-0:

    42.0.0 - 2024-01-22

    
</tr></table>

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