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1 change: 0 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -9,4 +9,3 @@ docs/.vitepress/dist
docs/.vitepress/cache
docs/components
.DS_Store
/.vitepress
191 changes: 25 additions & 166 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,162 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog).

## [v1.3.1](https://github.com/alan-wu/flatmapvuer/compare/v1.3.0...v1.3.1)

### Commits

- Update map-utilties to version 1.3.0. [`013c45b`](https://github.com/alan-wu/flatmapvuer/commit/013c45b2de7d401dc9937b4b550b10071f820ba5)

## [v1.3.0](https://github.com/alan-wu/flatmapvuer/compare/v1.2.0...v1.3.0) - 2024-07-10

### Merged

- Display connectivity info without obstructing current map view [`#175`](https://github.com/alan-wu/flatmapvuer/pull/175)
- Revert "Fix PubMed URL issue" [`#177`](https://github.com/alan-wu/flatmapvuer/pull/177)
- Fix PubMed URL issue [`#176`](https://github.com/alan-wu/flatmapvuer/pull/176)
- Utilities package [`#174`](https://github.com/alan-wu/flatmapvuer/pull/174)

### Commits

- Replace local components by map-utilities package [`e59cf6e`](https://github.com/alan-wu/flatmapvuer/commit/e59cf6e284a99d3abae12248e6da6b7a4b1cbe33)
- Update code for upcoming toolbar component [`94e38f4`](https://github.com/alan-wu/flatmapvuer/commit/94e38f47c48226f759b24c59f53ea119cce61331)
- Update code for upcoming treecontrols component [`ab31662`](https://github.com/alan-wu/flatmapvuer/commit/ab316621cfeeee234eeaf5a7b54de039f4a09bd6)

## [v1.2.0](https://github.com/alan-wu/flatmapvuer/compare/v1.1.1...v1.2.0) - 2024-06-24

### Merged

- Update to how modes are selected [`#170`](https://github.com/alan-wu/flatmapvuer/pull/170)
- Switch to latest version of flatmap-viewer [`#173`](https://github.com/alan-wu/flatmapvuer/pull/173)
- Update marker icon for help mode [`#6`](https://github.com/alan-wu/flatmapvuer/pull/6)

### Commits

- Switch the mode selector to a title/subtitle style [`13f1ff7`](https://github.com/alan-wu/flatmapvuer/commit/13f1ff79eb903ce2103d9d289b95dd4f161d1009)
- Switch network discover mode to 'neuron connections' mode and add help text [`2d4f050`](https://github.com/alan-wu/flatmapvuer/commit/2d4f050ca1011c1272d1515e8be5993fbba5d8ca)
- Maintain viewing modes order. [`bb1dc6a`](https://github.com/alan-wu/flatmapvuer/commit/bb1dc6ae5609869935e46c4fd235d9c2badfb1ea)

## [v1.1.1](https://github.com/alan-wu/flatmapvuer/compare/v1.1.0...v1.1.1) - 2024-06-06

### Merged

- UI updates for FC map pathway container [`#171`](https://github.com/alan-wu/flatmapvuer/pull/171)
- Now can handle single and double nodes at all times [`#169`](https://github.com/alan-wu/flatmapvuer/pull/169)

### Commits

- Add a fix to cypress testing. [`aa8de18`](https://github.com/alan-wu/flatmapvuer/commit/aa8de189572cb34ba584f99cc895926b79ed7d22)
- Make improvements on TreeControls UI [`72fe2ee`](https://github.com/alan-wu/flatmapvuer/commit/72fe2ee54f6b257d870d3ff7bf4dbe336c2e98dd)
- Update cypress testing. [`266c29c`](https://github.com/alan-wu/flatmapvuer/commit/266c29c28d2c25665f49267f7953abb6fcf46daa)

## [v1.1.0](https://github.com/alan-wu/flatmapvuer/compare/v1.1.0-beta.3...v1.1.0) - 2024-05-29

### Merged

- Remove origins from highlight in network explorer mode: [`#144`](https://github.com/alan-wu/flatmapvuer/pull/144)
- Toolbar icon style [`#168`](https://github.com/alan-wu/flatmapvuer/pull/168)
- fix toolbar when Drawn By specified [`#167`](https://github.com/alan-wu/flatmapvuer/pull/167)
- New draw feature for Annotator [`#142`](https://github.com/alan-wu/flatmapvuer/pull/142)
- Refactor [`#14`](https://github.com/alan-wu/flatmapvuer/pull/14)
- Add features alert [`#161`](https://github.com/alan-wu/flatmapvuer/pull/161)
- Supports the old help mode without help dialog. [`#166`](https://github.com/alan-wu/flatmapvuer/pull/166)
- Flatmap improvements - help text visible [`#165`](https://github.com/alan-wu/flatmapvuer/pull/165)

### Commits

- Update package-lock.json. [`4300265`](https://github.com/alan-wu/flatmapvuer/commit/4300265d0b175e003d937c225765466219d1663a)
- Remove console message. [`eeaa6cc`](https://github.com/alan-wu/flatmapvuer/commit/eeaa6cc0f309b880fef4d66c01abd14eb804f1c0)
- move dialog display control into draw tool component [`aafa7a8`](https://github.com/alan-wu/flatmapvuer/commit/aafa7a87e4cdbf5dc576f09534f6b21fc4f1eb93)

## [v1.1.0-beta.3](https://github.com/alan-wu/flatmapvuer/compare/v1.0.2...v1.1.0-beta.3) - 2024-05-22

### Merged

- Highlight on species [`#127`](https://github.com/alan-wu/flatmapvuer/pull/127)
- Add relation between drawn features [`#13`](https://github.com/alan-wu/flatmapvuer/pull/13)
- Refactor annotator code [`#12`](https://github.com/alan-wu/flatmapvuer/pull/12)
- Send item details when adding an annotation. [`#11`](https://github.com/alan-wu/flatmapvuer/pull/11)
- A tidy up and pass more connection information to the annotation service [`#10`](https://github.com/alan-wu/flatmapvuer/pull/10)
- Annotator further development [`#8`](https://github.com/alan-wu/flatmapvuer/pull/8)
- Viewer changes merged [`#7`](https://github.com/alan-wu/flatmapvuer/pull/7)
- pull requirements [`#6`](https://github.com/alan-wu/flatmapvuer/pull/6)
- pull latest changes [`#4`](https://github.com/alan-wu/flatmapvuer/pull/4)
- Merge new changes [`#3`](https://github.com/alan-wu/flatmapvuer/pull/3)
- Vue3 migration [`#2`](https://github.com/alan-wu/flatmapvuer/pull/2)

### Commits

- Merged in annotationn changes. [`7b8cfcb`](https://github.com/alan-wu/flatmapvuer/commit/7b8cfcb0ba742711936d353759c86c2f7fa35887)
- Merged in upstream changes. [`eeba37c`](https://github.com/alan-wu/flatmapvuer/commit/eeba37cb1c7c7efc3589c09fb6a2d1538debf023)
- merged in upstream changes. [`77ddcf7`](https://github.com/alan-wu/flatmapvuer/commit/77ddcf73569a72613bd45de90bafbc5b74641ba6)

## [v1.0.2](https://github.com/alan-wu/flatmapvuer/compare/v1.0.1...v1.0.2) - 2024-05-15

### Merged

- Bugfix - Help Mode Tooltips [`#164`](https://github.com/alan-wu/flatmapvuer/pull/164)
- Add pathways checkbox events for data tracking [`#163`](https://github.com/alan-wu/flatmapvuer/pull/163)

### Commits

- Fix featured dataset tooltip and help mode [`883e6c5`](https://github.com/alan-wu/flatmapvuer/commit/883e6c5acf243abda7f0da047a80ff7af3677f95)
- Open drawer to show tooltips inside when help mode is activated [`82b1ce6`](https://github.com/alan-wu/flatmapvuer/commit/82b1ce6405e6e6dac31f0e959010b06c7aa2f268)
- Add open pubmed button click event [`782145d`](https://github.com/alan-wu/flatmapvuer/commit/782145d4641f173c992c36792eacf960b2456e3c)

## [v1.0.1](https://github.com/alan-wu/flatmapvuer/compare/v1.0.0...v1.0.1) - 2024-05-02

### Merged

- Add species switch in component testing [`#150`](https://github.com/alan-wu/flatmapvuer/pull/150)

### Commits

- Update changelogs. [`164211a`](https://github.com/alan-wu/flatmapvuer/commit/164211aafed94962d79666caabe8e7df15726912)
- Update test for species switch [`5cba70e`](https://github.com/alan-wu/flatmapvuer/commit/5cba70e6310fe5339017b8140c91d16e3b883b79)
- Fix a typo. [`6feeab9`](https://github.com/alan-wu/flatmapvuer/commit/6feeab9a33e1ba2a4960a1a344442fa864a7c582)

## [v1.0.0](https://github.com/alan-wu/flatmapvuer/compare/v0.5.9...v1.0.0) - 2024-04-24

### Merged

- Fix popup close error [`#160`](https://github.com/alan-wu/flatmapvuer/pull/160)
- Fix tooltip arrow on top position [`#159`](https://github.com/alan-wu/flatmapvuer/pull/159)
- Fix api docs demo for pinia [`#158`](https://github.com/alan-wu/flatmapvuer/pull/158)
- Fix popup showing on switching viewingMode [`#157`](https://github.com/alan-wu/flatmapvuer/pull/157)
- Popup UI Updates [`#156`](https://github.com/alan-wu/flatmapvuer/pull/156)
- Fix tooltip arrows UI for corner positions [Bugfix] [UI] [`#153`](https://github.com/alan-wu/flatmapvuer/pull/153)
- Update vitepress config with alias to resolve dir [`#148`](https://github.com/alan-wu/flatmapvuer/pull/148)
- Update flatmapvuer. [`#147`](https://github.com/alan-wu/flatmapvuer/pull/147)
- Add pinia in Cypress component test [`#4`](https://github.com/alan-wu/flatmapvuer/pull/4)
- Annotation authentication [`#143`](https://github.com/alan-wu/flatmapvuer/pull/143)
- Fix a bug causing annotation to not open the editing dialog. [`#9`](https://github.com/alan-wu/flatmapvuer/pull/9)
- Update docs content [`#146`](https://github.com/alan-wu/flatmapvuer/pull/146)
- Cleanup unused npm packages [`#137`](https://github.com/alan-wu/flatmapvuer/pull/137)
- Make flatmap query helper functions more robust [`#141`](https://github.com/alan-wu/flatmapvuer/pull/141)
- Change Flight Path Option [`#140`](https://github.com/alan-wu/flatmapvuer/pull/140)
- Feature/3d fc map [`#139`](https://github.com/alan-wu/flatmapvuer/pull/139)
- Hotfix - el-radio props incorrectly changed [`#136`](https://github.com/alan-wu/flatmapvuer/pull/136)
- Cypress testing Vue 3 [`#134`](https://github.com/alan-wu/flatmapvuer/pull/134)
- Update test and dependencies. [`#4`](https://github.com/alan-wu/flatmapvuer/pull/4)
- APIs Documentation [`#133`](https://github.com/alan-wu/flatmapvuer/pull/133)
- Update species selectbox style for hidden contents [`#135`](https://github.com/alan-wu/flatmapvuer/pull/135)
- Fix svg being slighlty to big for its container [`#132`](https://github.com/alan-wu/flatmapvuer/pull/132)
- Featured marker fix [`#128`](https://github.com/alan-wu/flatmapvuer/pull/128)
- Add missing interface [`#131`](https://github.com/alan-wu/flatmapvuer/pull/131)
- Add a property to disable UI elements [`#130`](https://github.com/alan-wu/flatmapvuer/pull/130)
- Vue3 migration [`#126`](https://github.com/alan-wu/flatmapvuer/pull/126)
- Remove warning [`#3`](https://github.com/alan-wu/flatmapvuer/pull/3)
- fetch vue3 migration changes [`#1`](https://github.com/alan-wu/flatmapvuer/pull/1)
- Allow html in "what's new": [`#125`](https://github.com/alan-wu/flatmapvuer/pull/125)
- Featured marker legend name fix [`#124`](https://github.com/alan-wu/flatmapvuer/pull/124)

### Commits

- Add missing files [`219c3fe`](https://github.com/alan-wu/flatmapvuer/commit/219c3fe91fce576bc6314bd328f2ffaa89d89e3f)
- Remove vuese/cli for npm security vulnerabilities [`bc46469`](https://github.com/alan-wu/flatmapvuer/commit/bc4646969051d750dc02a19c3226c067aea8b809)
- Fix an issue with package-lock.json. [`1d9b9e5`](https://github.com/alan-wu/flatmapvuer/commit/1d9b9e57fc2765fd718ccaa6ac4ecae1aad43b72)

## [v0.5.9](https://github.com/alan-wu/flatmapvuer/compare/v0.5.8...v0.5.9) - 2023-12-08
## [v0.5.9](https://github.com/alan-wu/flatmapvuer/compare/v0.5.9-beta.0...v0.5.9)

### Merged

Expand All @@ -175,6 +20,14 @@ Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog).
- Reset version. [`5f10239`](https://github.com/alan-wu/flatmapvuer/commit/5f10239a05f33b9d6bb1b6c71d02605c0d1c0c58)
- Merge in changes. [`76ee249`](https://github.com/alan-wu/flatmapvuer/commit/76ee249280969445f48af38e9dfe8677d45faa00)

## [v0.5.9-beta.0](https://github.com/alan-wu/flatmapvuer/compare/v0.5.8...v0.5.9-beta.0) - 2023-11-09

### Commits

- Add initial UI for annotation viewing/submitting dialog. [`b5d3263`](https://github.com/alan-wu/flatmapvuer/commit/b5d326303f83bba7c1c7f468aecee49d092e0b4d)
- Restructure Tooltip component. Add in Annotational Tool component [`974f07e`](https://github.com/alan-wu/flatmapvuer/commit/974f07e6b242d11f3fb33469f0ae59246a5647e7)
- Improve annotation UI based on feedbacks. [`c631c7a`](https://github.com/alan-wu/flatmapvuer/commit/c631c7a98e8b5baf070b02c3a7bdfbfcf999bd80)

## [v0.5.8](https://github.com/alan-wu/flatmapvuer/compare/v0.5.7...v0.5.8) - 2023-11-07

### Merged
Expand Down Expand Up @@ -259,18 +112,13 @@ Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog).

## [v0.4.6](https://github.com/alan-wu/flatmapvuer/compare/0.4.6-fixes-2...v0.4.6) - 2023-06-01

## [0.4.6-fixes-2](https://github.com/alan-wu/flatmapvuer/compare/0.4.6-fixes-1...0.4.6-fixes-2) - 2023-06-05

### Commits

- Search will display the label and location of the highest score result. [`c3b2e47`](https://github.com/alan-wu/flatmapvuer/commit/c3b2e471ed3bb6eb61c078c903814f40d57ca3fa)

## [0.4.6-fixes-1](https://github.com/alan-wu/flatmapvuer/compare/v0.4.6-fixes-0...0.4.6-fixes-1) - 2023-06-02
## [0.4.6-fixes-2](https://github.com/alan-wu/flatmapvuer/compare/v0.4.6-fixes-0...0.4.6-fixes-2) - 2023-06-05

### Commits

- Version 0.4.6-fixes-1 [`e8b60c3`](https://github.com/alan-wu/flatmapvuer/commit/e8b60c3e9bf381f4af68bd95612cdd20ea3132d0)
- Rename mapboxgl in css rules to maplibregl. [`9040cc9`](https://github.com/alan-wu/flatmapvuer/commit/9040cc96d32bb076c14c05af52f79a7137cd2651)
- Search will display the label and location of the highest score result. [`c3b2e47`](https://github.com/alan-wu/flatmapvuer/commit/c3b2e471ed3bb6eb61c078c903814f40d57ca3fa)

## [v0.4.6-fixes-0](https://github.com/alan-wu/flatmapvuer/compare/v0.4.5...v0.4.6-fixes-0) - 2023-06-01

Expand Down Expand Up @@ -326,8 +174,8 @@ Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog).
### Commits

- Create a new vue component for the selection controls. [`aed5e35`](https://github.com/alan-wu/flatmapvuer/commit/aed5e3598d4d1fc8d6dd34a0cb7541066d155751)
- Add dynamic system legends. [`9c86414`](https://github.com/alan-wu/flatmapvuer/commit/9c8641476d61830f5f5141f3fe29c1a4c04b316f)
- update flatmap-viewer to 2.2.13 [`f8e0dc8`](https://github.com/alan-wu/flatmapvuer/commit/f8e0dc8473b37935dc24b9765569ed5c9d26604d)
- Update flatmap-viewer. [`33c53dc`](https://github.com/alan-wu/flatmapvuer/commit/33c53dc53989823f934235e6ebbfe2a8bd1652a9)

## [v0.3.15](https://github.com/alan-wu/flatmapvuer/compare/v0.3.12...v0.3.15) - 2023-02-27

Expand All @@ -347,18 +195,29 @@ Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog).

## [v0.3.12](https://github.com/alan-wu/flatmapvuer/compare/v0.3.12-fixes-0...v0.3.12) - 2023-01-20

## [v0.3.12-fixes-0](https://github.com/alan-wu/flatmapvuer/compare/v0.3.10...v0.3.12-fixes-0) - 2023-01-20
## [v0.3.12-fixes-0](https://github.com/alan-wu/flatmapvuer/compare/v0.3.11...v0.3.12-fixes-0) - 2023-01-20

### Merged

- Permalink update [`#90`](https://github.com/alan-wu/flatmapvuer/pull/90)
- Now search on model for pubmed ids [`#85`](https://github.com/alan-wu/flatmapvuer/pull/85)

### Commits

- Flatmapvuer now uses uuid to fetch the map when saved in state. [`af447d3`](https://github.com/alan-wu/flatmapvuer/commit/af447d3e73bb8324d636b4831d7527d821704a60)
- Improve initialisation of the multi flatmap. [`c00e258`](https://github.com/alan-wu/flatmapvuer/commit/c00e2584f02e0e9d4fbb8507a5ebbabd0f2f9655)
- Fix an issue with reactivity by assigning value directly into an object. [`f87757b`](https://github.com/alan-wu/flatmapvuer/commit/f87757b32f0566eb8d6355055d60cb4ff724b597)

## [v0.3.11](https://github.com/alan-wu/flatmapvuer/compare/v0.3.10...v0.3.11) - 2022-12-16

### Merged

- Now search on model for pubmed ids [`#85`](https://github.com/alan-wu/flatmapvuer/pull/85)

### Commits

- Cut down pubmedviewer, organise tooltip proccessing [`dde4b8b`](https://github.com/alan-wu/flatmapvuer/commit/dde4b8b62808475dac4e4cc2ecbbcc72c48d1196)
- Increment version number to 0.3.11. [`a7509fd`](https://github.com/alan-wu/flatmapvuer/commit/a7509fdbd4f6914f4362f2e526362ca8248b1a5e)
- Remove older unused watch on the pubmedvuer [`a74efe6`](https://github.com/alan-wu/flatmapvuer/commit/a74efe6ea54380d36afdaeede339584697701d5b)

## [v0.3.10](https://github.com/alan-wu/flatmapvuer/compare/0.3.9...v0.3.10) - 2022-12-13

Expand Down
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