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New cap mesh and renal capsule scaffold #268

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New cap mesh and renal capsule scaffold #268

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@oneway1225 oneway1225 commented Nov 22, 2024 •
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Add cap mesh that generates cap(s) at either ends of a tube network.
Works by adding "(" and ")" at the ends of a network layout structure, e.g. (1-2) creates a default tube network with caps at both ends.

Also includes renal capsule scaffold.

@oneway1225 oneway1225 marked this pull request as ready for review January 8, 2025 21:21
@oneway1225 oneway1225 changed the title New cap mesh New cap mesh and renal capsule scaffold Jan 8, 2025
oneway1225 added 15 commits June 16, 2025 09:29
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oneway1225 commented Jul 21, 2025

Screenshot 2025-07-21 111014 Screenshot 2025-07-21 111030 Screenshot 2025-07-21 111047 Screenshot 2025-07-22 085634

Whole body scaffold with caps at the top of the head, hands and feet (Figs. 1 - 3).
Renal capsule scaffold (Fig. 4).

@oneway1225
Refactor isCap and isPatch code in networkmesh
bb89342
@oneway1225
Fix issue with cap transition elements
aafbb7c
@oneway1225
Merge branch 'main' into cap-mesh
bf07185 
# Conflicts:
#	src/scaffoldmaker/scaffolds.py
@oneway1225
Fix issue with unit test for renal capsule scaffold
15f497a
@oneway1225
Refactor node layouts in eft_utils
9d0f2fb
@oneway1225
Add annotations to the kidney scaffold
6717a25
@oneway1225
Rename Renal Capsule scaffold to Kidney scaffold
b6067f8
@oneway1225
Update parameters for kidney dimensions
826cd0b
@oneway1225
Add left and right kidneys
594b161
@oneway1225
Update annotations for left and right kidneys
3538c76
@oneway1225
Update unit test
13e131e
@oneway1225
Add point markers
4a030e9
@oneway1225
Remove redundant function in networkmesh
0d4cb0a
@oneway1225
Fix wrong option names
32cd4ab
@oneway1225
Add a function for bending the kidney mesh
ff5deae
@oneway1225
Remove kidney spacing option in the 1D layout
5ee3103
@oneway1225
Remove unused options in 1D layout
fe7b034
@oneway1225
Fix kidney orientation
84fc3f8
@oneway1225
Change number of elements through shell to cortex
55ab34a
@oneway1225
Update unit test
38ec23c
@oneway1225
Merge branch 'main' into cap-mesh
491ef87
@oneway1225
Clean up code and method descriptions
ea241f3
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oneway1225 commented Nov 18, 2025

kidney scaffoldmaker1 kidney scaffoldmaker2
  • Added a new bend function.
  • 1D kidney network layout is set to a private scaffold type. The network layout edit will be only used within the 3D kidney scaffold and be used for adjusting the dimensions of the kidney.

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