EHR Pipeline Overview

Repositories

The application consists of multiple repositories that work together to complete a single 'pipeline run':

• The ehr-pipeline-documentation repository holds centralized documentation and is where GitHub Issues are tracked during development and maintanance.
• The ccc-omop-file-processor repository provides APIs to validate, standardize, and load files into BigQuery
• The ccc-omop-analyzer repository provides APIs to execute OHDSI analytics packages against OMOP datasets in BigQuery
• The ccc-orchestrator repository provides functionality to automate the execution of a pipeline run

User guides

• A comprehensive user guide can be found on the wiki page.
• A file processor quick start guide is available describing the basic setup and usage of the file processor endpoints.
• The file processor api documentation details each endpoint in the file processor API.

Project Management

All major tasks will be be tracked as GH Issues and will be managed in the associated GH Project punchlist/kanban board.