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This is to avoid having to insert all statements in Protege, and to be able to see the differences between the asserted and inferred axioms after running the reasoner.

I may have overlooked something but from what i saw the only changes with the Chap 4 OWL file was to remove the inferred Coccus subclasses (diff below is comparing files in Turtle format):

$ diff ../bacteria_chap3.ttl ../bacteria_chap4.ttl 
201c201,202
<                                     ] .
---
>                                     ] ;
>                 rdfs:subClassOf :Coccus .
231c232,233
<                                    ] .
---
>                                    ] ;
>                rdfs:subClassOf :Coccus .

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