AureusSpeedTracker

Semi-automated analysis of the kinetics and dynamics of peptidoglycan synthases of S. aureus

Built in Python 3.9

Requirements

Setup instructions:

1. Install Anaconda3

2. Clone or Download as zip this project

3. Open anaconda3 prompt terminal inside AureusSpeedTracker directory

4. Create a new environment (optional)

conda create -n env_name python=3.9

5. Activate environment (optional)

conda activate env_name

6. Install requirements from file

conda install --file requirements.txt

Usage instructions:

1. Open Terminal inside AureusSpeedTracker directory

2. Activate environment (only if you created a new environment!)

conda activate env_name

3. Use SPT_tool

python ChooseMethodWindow.py

###NOTE:

.npy files may not load properly if they were built with older library versions

Using a virtual environment is not necessary but strongly advised