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CHANGED: CI triggers, release and docs #88

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Merged
josenimo merged 2 commits into from
Oct 20, 2025
Merged

CHANGED: CI triggers, release and docs #88

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CHANGED: CI triggers, release and docs
josenimo Oct 20, 2025
f84d5ca
chore: version bump
josenimo Oct 20, 2025
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6 changes: 4 additions & 2 deletions .github/workflows/docs.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,10 @@ name: docs

on:
push:
tags:
- "v*"
branches:
- main
paths:
- 'docs/**'
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Copilot AI Oct 20, 2025

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[nitpick] If your docs build depends on MkDocs or top-level config files, consider including them in the path filter so changes to configuration also trigger the docs workflow (e.g., mkdocs.yml, README.md).

Suggested change
- 'docs/**'
- 'docs/**'
- 'mkdocs.yml'
- 'README.md'

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jobs:
build-docs:
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7 changes: 3 additions & 4 deletions .github/workflows/publish.yml
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Original file line number Diff line number Diff line change
@@ -1,9 +1,8 @@
name: Publish to pypi

on:
push:
tags:
- "v*"
release:
types: [published]

jobs:
publish:
Expand All @@ -17,7 +16,7 @@ jobs:
with:
python-version-file: "pyproject.toml"

- name: Install the latest version of uv
- name: Install uv
uses: astral-sh/setup-uv@v6
with:
enable-cache: true
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16 changes: 8 additions & 8 deletions .github/workflows/test.yml
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Expand Up @@ -13,7 +13,7 @@ jobs:
strategy:
fail-fast: false
matrix:
os: [windows-latest, macos-latest, ubuntu-latest ]
os: [windows-latest, macos-latest, ubuntu-latest]
python: ["3.11", "3.12", "3.13"]

env:
Expand All @@ -39,13 +39,13 @@ jobs:
DISPLAY: :42
run: uv run pytest --cov --color=yes --cov-report=xml

# - name: Upload coverage to Codecov
# uses: codecov/codecov-action@v5
# with:
# name: coverage
# verbose: true
# env:
# CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v5
with:
name: coverage
verbose: true
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
Comment on lines +47 to +48
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Copilot AI Oct 20, 2025

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[nitpick] Prefer passing the Codecov token via the action's input rather than as an environment variable to align with the action interface and reduce exposure to child steps. Example: add with: token: ${{ secrets.CODECOV_TOKEN }} and drop the env block.

Suggested change
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
token: ${{ secrets.CODECOV_TOKEN }}

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- name: Build Wheel
run: "uv build"
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2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[project]
name = "openDVP"
version = "0.7.3"
version = "0.7.4"
description = "open-sourced Deep Visual Proteomics toolkit"
readme = "README.md"
requires-python = ">=3.11, <3.14"
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2 changes: 1 addition & 1 deletion uv.lock
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