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Protocol Export from protocol developer #350

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30 changes: 30 additions & 0 deletions fibsem/ui/FibsemMillingStageEditorWidget.py
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Original file line number Diff line number Diff line change
Expand Up @@ -60,6 +60,7 @@
)
from fibsem.ui.napari.utilities import is_position_inside_layer
from fibsem.utils import format_value
from fibsem.ui.utils import open_save_file_dialog

MILLING_SETTINGS_GUI_CONFIG = {
"patterning_mode": {
Expand Down Expand Up @@ -1237,18 +1238,47 @@ def _create_widgets(self):
self.checkbox_sync_positions.setObjectName("checkbox-sync-positions")
self.checkbox_sync_positions.setChecked(True)

# export button
self.pushButton_export = QPushButton("Export as Base Protocol")
self.pushButton_export.clicked.connect(self.export_base_protocol)

self.grid_layout = QGridLayout()
self.grid_layout.addWidget(self.label_selected_lamella, 0, 0)
self.grid_layout.addWidget(self.comboBox_selected_lamella, 0, 1)
self.grid_layout.addWidget(self.label_selected_milling, 1, 0)
self.grid_layout.addWidget(self.comboBox_selected_milling, 1, 1)
self.grid_layout.addWidget(self.checkbox_sync_positions, 2, 0, 1, 2)
self.grid_layout.addWidget(self.pushButton_export, 3,0,1,2)

# main layout
self.main_layout = QVBoxLayout(self)
self.main_layout.addWidget(self.milling_stage_editor)
self.main_layout.addLayout(self.grid_layout)

def export_base_protocol(self):

""" Copies the milling pattern parameters for the current lamella protocol selected
in the protocol editor and saves them in a less verbose version of the output protocol,
similar to the default protocol, which captures only the most essential information. This
can then be used as a template for other lamellae or experiments
"""

selected_lamella: Lamella = self.comboBox_selected_lamella.currentData()
current_milling_dict = copy.deepcopy(selected_lamella.protocol)

path = open_save_file_dialog(
msg="Export Base protocol",
path=cfg.PROTOCOL_PATH,
_filter="*yaml",
parent=self,
)
if path == '':
return

self.protocol.save_base_protocol(path,current_milling_dict)



def _initialise_widgets(self):
if self.experiment is not None:
for pos in self.experiment.positions:
Expand Down