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Deep-MI / FastSurfer Public

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Upgrade WhipperSnapPy from 1.3 to 2.1, simplify and streamline integration#795

Merged

m-reuter merged 7 commits intoDeep-MI:devDeep-MI/FastSurfer:devfrom

ClePol:whippersnappy_bumpClePol/FastSurfer:whippersnappy_bumpCopy head branch name to clipboard

Mar 9, 2026

Conversation Commits7 (7)Checks Files changed

Merged

Upgrade WhipperSnapPy from 1.3 to 2.1, simplify and streamline integration#795
m-reuter merged 7 commits intoDeep-MI:devfrom
ClePol:whippersnappy_bump

Commits

Commits on Mar 9, 2026

Here's a summary of all changes made to bump whippersnappy from 1.3 to 2.1:
dkuegler
committed
Added a validation check (lines 767-801 in run_fastsurfer.sh) that:
dkuegler
committed
Decouple the generation of the thickness image and the freesurfer surface and overlay files.
dkuegler
committed
Fix ruff warnings
dkuegler
committed
Address github co-pilot suggestions
dkuegler
committed
- Fix CC Anterior to Posterior Order
dkuegler
committed
Restore threads argument for HypVINN.run_prediction.main
dkuegler
committed

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