The folder called "BaselineFitting" contains the BM code used to fit the model to baseline data, along with the common functions found in "CommonFunctions".
The folder called "MBR_rain_slash_modelfitting" (MBR_Seasonal_Model) contains functions for fitting the oncho model to seasonal rainfall data.
The folders called "Interventions" and "Interventions_HeteroABRBumped" contain code for running all of the interventions described in the paper.
The folder called "Resurgence_Modeling" contains code for simulating and estimating elimination and recrudescence probabilities post-stoppage of MDA.
The folder "PlotFunctions" contains code to generate figures.