EuracBiomedicalResearch · jorainer · Nov 20, 2025
diff --git a/R/README.md b/R/README.md
@@ -7,3 +7,11 @@ function to install them.
   function to install the R libraries.
 - R libraries to install should be added to *txt* file(s), one line per R
   package.
+
+## Sets of R packages
+
+- [packages-general.txt](packages-general.txt): general, uncategorized, R
+  packages.
+- [packages-stats.txt](packages-stats.txt): general statistics-related packages.
+- [packages-metabolomics.txt](packages-metabolomics.txt): R packages for Mass
+  Spectrometry and metabolomics data analysis.
diff --git a/R/general.txt → R/packages-general.txt b/R/general.txt → R/packages-general.txt
diff --git a/R/packages-metabolomics.txt b/R/packages-metabolomics.txt
@@ -0,0 +1,23 @@
+## R packages for metabolomics and MS in general
+## General infrastructure
+Spectra
+MsExperiment
+MsCoreUtils
+MetaboCoreUtils
+CompoundDb
+QFeatures
+MsQuality
+MsDataHub
+SpectriPy
+SpectraQL
+## Data backends
+MsBackendSql
+MsBackendMgf
+MsBackendMsp
+MsBackendMetaboLights
+MsBackendMassbank
+## Data analysis
+xcms
+MsFeatures
+MetaboAnnotation
+Rdisop
diff --git a/R/stats.txt → R/packages-stats.txt b/R/stats.txt → R/packages-stats.txt
@@ -5,3 +5,4 @@ robust
 robustbase
 multcomp
 survey
+limma
-Original file line number
+Diff line change
@@ Expand Up / @@ -5,3 +5,4 @@ robust @@
     robustbase
     multcomp
     survey
+    limma