Skip to content

fix typo and missing line #6

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
dmnkbckr wants to merge 4 commits into
base: master
Choose a base branch
from
Open

fix typo and missing line #6

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
746a588
fix typo and missing line
dmnkbckr May 12, 2023
0e997a9
append sys path
dmnkbckr May 12, 2023
f76d4f2
remove sys
dmnkbckr May 12, 2023
479a22b
typo
dmnkbckr May 12, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion dataset/default.py
View file
Open in desktop
Copy link

@Anne-Andresen Anne-Andresen Jul 11, 2023

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

minor typo no ?

Before: self.root_dir, nifti_file_name) for nifti_file_name in nifti_file_names if nifti_file_names.endswith('.nii')]

After: self.root_dir, nifti_file_name) for nifti_file_name in nifti_file_names if nifti_file_name.endswith('.nii')]

Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ def __init__(self, root_dir: str):
def get_data_files(self):
nifti_file_names = os.listdir(self.root_dir)
folder_names = [os.path.join(
self.root_dir, nifti_file_name) for nifti_file_name in nifti_file_names if nifti_file_names.endsiwth('.nii')]
self.root_dir, nifti_file_name) for nifti_file_name in nifti_file_names if nifti_file_names.endswith('.nii')]
return folder_names

def __len__(self):
Expand Down
1 change: 1 addition & 0 deletions train/get_dataset.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -45,4 +45,5 @@ def get_dataset(cfg):
val_dataset = DEFAULTDataset(
root_dir=cfg.dataset.root_dir)
sampler = None
return train_dataset, val_dataset, sampler
raise ValueError(f'{cfg.dataset.name} Dataset is not available')
2 changes: 2 additions & 0 deletions train/train_vqgan.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
"Adapted from https://github.com/SongweiGe/TATS"

import os
import sys
sys.path.append('/Users/dmnk/Documents/GitHub/segmentation_diffusion/medicaldiffusion')
import pytorch_lightning as pl
from pytorch_lightning.callbacks import ModelCheckpoint
from torch.utils.data import DataLoader
Expand Down