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1. Enso-Atlas Enso-Atlas Public

   Universal on-premise pathology AI platform: plug in any foundation model, dataset, or cancer task hassle free.

   Python 38 4

2. wgs-analysis-pipeline wgs-analysis-pipeline Public

   Whole genome sequencing analysis pipeline and tools

   Shell 15 2

3. yc-aixbio-hackathon yc-aixbio-hackathon Public

   Winning project at Y Combinator Bio/AI Hackathon: Tri-modal LUAD clinical decision support system; H&E pathology + RNA transcriptomics + clinical data fusion for treatment sequencing, clinical tria…

   Python 2 2

4. Trialscope-AI Trialscope-AI Public

   Calhacks 12.0 Regeneron Grand Prize recipient - Clinical Trial Intelligence Platform

   Python 3

5. denovo-protein-design denovo-protein-design Public

   A two-step computational pipeline for the de novo design of novel protein binders and their structural validation. The pipeline leverages deep learning-based generative models for design, and class…

   Jupyter Notebook 1

6. CompBio-at-Berkeley-Projects/Fa25-Project4-CNV-Cancer-RNAseq-analysis CompBio-at-Berkeley-Projects/Fa25-Project4-CNV-Cancer-RNAseq-analysis Public

   Build a lightweight, reproducible pipeline + dashboard (using tools like inferCNV) to infer, compare, and visualize CNV patterns from public scRNA-seq cancer datasets, separating malignant from nor…

   Python