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202 Commits
Indigo
Indigo
 
 
USC
USC
 
 
epimap
epimap
 
 
shulha
shulha
 
 
simulation
simulation
 
 
.gitignore
.gitignore
 
 
README.md
README.md
 
 
check-analysis-time.R
check-analysis-time.R
 
 
fix-colnames.R
fix-colnames.R
 
 
run-all.sh
run-all.sh
 
 
step1-fullCoverage.R
step1-fullCoverage.R
 
 
step1-fullCoverage.sh
step1-fullCoverage.sh
 
 
step2-makeModels.R
step2-makeModels.R
 
 
step2-makeModels.sh
step2-makeModels.sh
 
 
step3-analyzeChr.R
step3-analyzeChr.R
 
 
step3-analyzeChr.sh
step3-analyzeChr.sh
 
 
step4-mergeResults.sh
step4-mergeResults.sh
 
 
step5-derfinderReport.sh
step5-derfinderReport.sh
 
 
step6-regionMatrix.R
step6-regionMatrix.R
 
 
step6-regionMatrix.sh
step6-regionMatrix.sh
 
 
step6b-regionMatrix-merge.R
step6b-regionMatrix-merge.R
 
 

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dbFinder repo

JHPCE location: /dcl01/lieber/ajaffe/derRuns/derChIP

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dbFinder code

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derfinder chipseq

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