PhysioNet Quarter Century

Plot figures

1. Prepare data

• Export user and publication data from PhysioNet.
• Export citation data from Dimensions: https://www.dimensions.ai/
• Copy data to the data folder

2. Run notebooks

Plot figures using the Python Notbooks:

• https://github.com/MIT-LCP/physionet-25-years/blob/main/notebooks/figure_1_timeline.ipynb
• https://github.com/MIT-LCP/physionet-25-years/blob/main/notebooks/figure_2_projects.ipynb
• https://github.com/MIT-LCP/physionet-25-years/blob/main/notebooks/figure_3_worldmap.ipynb
• https://github.com/MIT-LCP/physionet-25-years/blob/main/notebooks/figure_4_users.ipynb
• https://github.com/MIT-LCP/physionet-25-years/blob/main/notebooks/figure_5_citations.ipynb

twentyfiveyears package

Some code in this repository (for example, scripts in the /scripts/ folder), require the twentyfiveyears package to be installed.

Install it with:

pip install -e .

Scripts can then be run with:

python scripts/yourscript.py