Dependencies Update

[JairMathAI]

The project is currently configured to work with the latest versions of its dependencies. Although the current version of PyTorch is 2.8.0, the most recent version of MONAI (1.5.0) provides official support only up to PyTorch 2.6.0.

This discrepancy causes a conflict during installation, preventing pip's dependency resolver from successfully completing the process. A workaround was discovered: after the initial installation, PyTorch can be manually upgraded to the latest version, along with the corresponding CUDA 12.8 drivers. Despite a support warning from MONAI, all project modules function as expected.

Both Lightning and BioIO are also operating on their latest versions. This solution should address the installation challenges faced by our collaborators, as the manual upgrade path for PyTorch does not break the overall package dependencies.

[codecov-commenter]

Codecov Report

❌ Patch coverage is 0% with 502 lines in your changes missing coverage. Please review.
✅ Project coverage is 3.44%. Comparing base (ba85ae2) to head (255baca).
⚠️ Report is 15 commits behind head on main.

Files with missing lines	Patch %	Lines
mmv_im2im/utils/utils.py	0.00%	215 Missing ⚠️
mmv_im2im/utils/fractal_layers.py	0.00%	86 Missing ⚠️
mmv_im2im/utils/topological_loss.py	0.00%	80 Missing ⚠️
mmv_im2im/utils/elbo_loss.py	0.00%	73 Missing ⚠️
mmv_im2im/utils/connectivity_loss.py	0.00%	34 Missing ⚠️
mmv_im2im/proj_tester.py	0.00%	11 Missing ⚠️
mmv_im2im/proj_trainer.py	0.00%	3 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff            @@
##            main    #111      +/-   ##
========================================
- Coverage   4.40%   3.44%   -0.96%     
========================================
  Files         36      41       +5     
  Lines       2815    3510     +695     
  Branches       0     489     +489     
========================================
- Hits         124     121       -3     
- Misses      2691    3389     +698     

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