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Preprocessing correction #113

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Preprocessing correction #113

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2 changes: 1 addition & 1 deletion mmv_im2im/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
__email__ = "jianxuchen.ai@gmail.com"
# Do not edit this string manually, always use bumpversion
# Details in CONTRIBUTING.md
__version__ = "0.6.1"
__version__ = "0.5.7"


def get_module_version():
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3 changes: 3 additions & 0 deletions mmv_im2im/map_extractor.py
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Expand Up @@ -135,6 +135,7 @@ def process_one_image(

if self.pre_process is not None:
x = self.pre_process(x)
x = x[0]

# choose different inference function for different types of models
# the input here is assumed to be a tensor
Expand Down Expand Up @@ -257,6 +258,8 @@ def process_one_image(
def run_inference(self):

self.setup_model()
self.setup_data_processing()

if "pred_slice2vol" in self.model_cfg.net:

if self.model_cfg.net["pred_slice2vol"] is not None:
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"

[project]
name = "mmv_im2im"
version = "0.6.1"
version = "0.5.7"
authors = [
{ name="Jianxu Chen", email="jianxuchen.ai@gmail.com" },
]
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4 changes: 2 additions & 2 deletions setup.cfg
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@@ -1,5 +1,5 @@
[bumpversion]
current_version = 0.6.1
current_version = 0.5.7
commit = True
tag = True

Expand All @@ -14,4 +14,4 @@ replace = version = "{new_version}"
[flake8]
exclude = docs/, .git/, __pycache__/, build/, dist/, .venv/, .tox/, *.egg-info/
ignore = E203, E402, W291, W503, W293, W292, E501
max-line-length = 88
max-line-length = 88