Pop-Genomics-Workshop2019

Content for MAPNET Workshop in analysis of low-coverage population genomic data

Links

• https://github.com/LynchLab/MAPGD
• Singularity
  • https://www.sylabs.io/docs/
  • https://singularity-hub.org/
  • https://singularityhub.github.io/
• Vagrant Box https://app.vagrantup.com/sylabs/boxes/singularity-3.0-ubuntu-bionic64
• Jupyter https://www.datacamp.com/community/tutorials/tutorial-jupyter-notebook

MBIE TPP REPO

https://github.com/PlantandFoodResearch/MBIE_TPP_Populations

Reproducing the Conda Environment

• run this under Linux.
• assuming you have installed miniconda

conda env create -f environment.yml