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fix attribute error for Slicer 5.6.2 - 5.8.1 #44

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fix attribute error for Slicer 5.6.2 - 5.8.1 #44

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33 changes: 17 additions & 16 deletions CochleaSeg/CochleaSeg.py
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Original file line number Diff line number Diff line change
Expand Up @@ -300,23 +300,24 @@ def run(self, inputVolumeNode, inputFiducialNode, cochleaSide, customisedOutputP
resTransPathOld = os.path.join(self.vsc.vtVars['outputPath'] ,"TransformParameters.0.txt")
resTransRgPath=resTransPathOld[0:-6]+'_Rg_Pars.txt'
resTransNRgPath=resTransPathOld[0:-6]+'_NRg_Pars.txt'


node_name = inputVolumeNode.GetName()

resOldDefPath = os.path.join(self.vsc.vtVars['outputPath'] , "deformationField"+self.vsc.vtVars['imgType'])
resDefRgPath = os.path.join(self.vsc.vtVars['outputPath'] , inputVolumeNode.GetName()+"_Rg_dFld"+self.vsc.vtVars['imgType'])
resDefNRgPath = os.path.join(self.vsc.vtVars['outputPath'] , inputVolumeNode.GetName()+"_NRg_dFld"+self.vsc.vtVars['imgType'])

inputImgName = os.path.basename(os.path.splitext(inputVolumeNode.GetStorageNode().GetFileName())[0])
segNodeName = inputVolumeNode.GetName() + "_S.Seg"

stPtNodeName = inputVolumeNode.GetName() + "_StPts"
svPtNodeName = inputVolumeNode.GetName() + "_SvPts"
stLtPtNodeName = inputVolumeNode.GetName() + "_StLtPts"
stOcPtNodeName = inputVolumeNode.GetName() + "_StOcPts"
avPtNodeName = inputVolumeNode.GetName() + "_avPts"

transRgNodeName = inputVolumeNode.GetName() + "_Rg_Transform"
transNRgNodeName = inputVolumeNode.GetName() + "_NRg_Transform"

resDefRgPath = os.path.join(self.vsc.vtVars['outputPath'] , node_name+"_Rg_dFld"+self.vsc.vtVars['imgType'])
resDefNRgPath = os.path.join(self.vsc.vtVars['outputPath'] , node_name+"_NRg_dFld"+self.vsc.vtVars['imgType'])

segNodeName = node_name + "_S.Seg"

stPtNodeName = node_name + "_StPts"
svPtNodeName = node_name + "_SvPts"
stLtPtNodeName = node_name + "_StLtPts"
stOcPtNodeName = node_name + "_StOcPts"
avPtNodeName = node_name + "_avPts"

transRgNodeName = node_name + "_Rg_Transform"
transNRgNodeName = node_name + "_NRg_Transform"

self.vsc.removeOtputsFolderContents()
# check if the model is found
if not os.path.isfile(modelPath):
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